Query 018713
Match_columns 351
No_of_seqs 249 out of 3297
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:25:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2524 Predicted transcriptio 99.8 8.4E-18 1.8E-22 148.6 12.9 125 199-343 168-292 (294)
2 KOG1764 5'-AMP-activated prote 99.7 1.7E-16 3.7E-21 153.0 20.0 234 36-348 58-292 (381)
3 COG2524 Predicted transcriptio 99.7 1.2E-16 2.5E-21 141.4 13.3 122 42-265 170-291 (294)
4 COG3448 CBS-domain-containing 99.7 6.1E-16 1.3E-20 139.2 12.7 136 36-265 237-372 (382)
5 COG3448 CBS-domain-containing 99.6 9.1E-16 2E-20 138.1 11.4 133 200-344 242-374 (382)
6 COG3620 Predicted transcriptio 99.6 2.5E-15 5.4E-20 123.8 11.8 140 184-344 47-186 (187)
7 cd04641 CBS_pair_28 The CBS do 99.6 3.1E-14 6.7E-19 115.1 13.4 116 216-339 2-119 (120)
8 cd04603 CBS_pair_KefB_assoc Th 99.6 3.8E-14 8.3E-19 113.1 12.8 108 217-339 3-110 (111)
9 cd04618 CBS_pair_5 The CBS dom 99.6 3.2E-14 6.9E-19 111.5 11.7 95 216-339 2-97 (98)
10 cd04619 CBS_pair_6 The CBS dom 99.6 6.3E-14 1.4E-18 112.3 13.0 111 217-339 3-113 (114)
11 KOG1764 5'-AMP-activated prote 99.6 9.6E-14 2.1E-18 134.0 16.6 200 55-345 162-362 (381)
12 PRK15094 magnesium/cobalt effl 99.6 4.3E-14 9.4E-19 132.2 13.5 129 198-343 62-190 (292)
13 cd04617 CBS_pair_4 The CBS dom 99.6 7E-14 1.5E-18 112.8 13.0 112 216-339 2-117 (118)
14 PRK14869 putative manganese-de 99.6 6.4E-15 1.4E-19 149.8 7.8 271 44-339 68-390 (546)
15 TIGR03520 GldE gliding motilit 99.5 7.9E-14 1.7E-18 136.5 14.6 126 199-343 187-312 (408)
16 cd04607 CBS_pair_NTP_transfera 99.5 2.2E-13 4.7E-18 108.7 13.6 109 217-339 4-112 (113)
17 COG3620 Predicted transcriptio 99.5 1.3E-13 2.9E-18 113.6 12.2 121 43-265 64-184 (187)
18 PRK11543 gutQ D-arabinose 5-ph 99.5 1.5E-13 3.3E-18 130.6 14.5 123 202-340 196-318 (321)
19 PRK10892 D-arabinose 5-phospha 99.5 2.1E-13 4.5E-18 130.0 14.9 124 201-340 200-323 (326)
20 cd04593 CBS_pair_EriC_assoc_ba 99.5 3.4E-13 7.3E-18 108.0 13.6 111 216-339 2-114 (115)
21 cd04627 CBS_pair_14 The CBS do 99.5 2.6E-13 5.7E-18 110.1 13.1 118 216-339 2-122 (123)
22 cd04600 CBS_pair_HPP_assoc Thi 99.5 2.6E-13 5.7E-18 109.9 13.0 118 215-339 2-123 (124)
23 cd04624 CBS_pair_11 The CBS do 99.5 5.2E-13 1.1E-17 106.2 13.9 110 216-339 2-111 (112)
24 COG2905 Predicted signal-trans 99.5 7E-14 1.5E-18 136.1 10.2 157 12-268 115-273 (610)
25 PRK15094 magnesium/cobalt effl 99.5 1.1E-12 2.4E-17 122.8 17.9 164 41-310 64-227 (292)
26 cd04639 CBS_pair_26 The CBS do 99.5 4.1E-13 8.8E-18 106.6 12.6 109 216-339 2-110 (111)
27 cd04605 CBS_pair_MET2_assoc Th 99.5 7.9E-13 1.7E-17 104.7 14.1 108 215-339 2-109 (110)
28 cd04630 CBS_pair_17 The CBS do 99.5 6E-13 1.3E-17 106.4 13.4 112 216-339 2-113 (114)
29 cd04623 CBS_pair_10 The CBS do 99.5 7.8E-13 1.7E-17 105.0 13.9 111 216-339 2-112 (113)
30 cd04801 CBS_pair_M50_like This 99.5 3.6E-13 7.9E-18 107.6 11.8 110 216-339 2-113 (114)
31 cd04615 CBS_pair_2 The CBS dom 99.5 6.8E-13 1.5E-17 105.6 13.2 110 217-339 3-112 (113)
32 cd04642 CBS_pair_29 The CBS do 99.5 5.4E-13 1.2E-17 108.8 12.7 117 216-339 2-125 (126)
33 cd04626 CBS_pair_13 The CBS do 99.5 7.1E-13 1.5E-17 105.3 13.0 109 216-339 2-110 (111)
34 cd04608 CBS_pair_PALP_assoc Th 99.5 2.3E-13 5E-18 111.2 10.2 114 215-341 2-124 (124)
35 TIGR03520 GldE gliding motilit 99.5 1.1E-12 2.4E-17 128.4 16.8 164 40-312 187-350 (408)
36 cd04619 CBS_pair_6 The CBS dom 99.5 1.1E-12 2.4E-17 105.1 13.9 112 56-262 2-113 (114)
37 COG2905 Predicted signal-trans 99.5 3.4E-13 7.4E-18 131.4 12.8 128 200-346 146-274 (610)
38 PRK07807 inosine 5-monophospha 99.5 2.5E-12 5.5E-17 127.5 19.2 170 37-327 82-251 (479)
39 cd04618 CBS_pair_5 The CBS dom 99.5 4.7E-13 1E-17 104.9 11.2 96 56-262 2-97 (98)
40 cd04596 CBS_pair_DRTGG_assoc T 99.5 7E-13 1.5E-17 105.0 12.1 105 216-339 3-107 (108)
41 cd04604 CBS_pair_KpsF_GutQ_ass 99.5 9.9E-13 2.2E-17 104.6 13.0 112 215-339 2-113 (114)
42 cd04803 CBS_pair_15 The CBS do 99.5 8.9E-13 1.9E-17 106.4 12.8 117 216-339 2-121 (122)
43 cd04617 CBS_pair_4 The CBS dom 99.5 1.2E-12 2.6E-17 105.5 13.4 114 56-262 2-117 (118)
44 cd04643 CBS_pair_30 The CBS do 99.5 1E-12 2.2E-17 105.0 12.8 114 216-339 2-115 (116)
45 cd04631 CBS_pair_18 The CBS do 99.5 7.9E-13 1.7E-17 107.2 12.1 118 216-339 2-124 (125)
46 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 1.7E-12 3.6E-17 102.2 13.5 104 216-339 2-105 (106)
47 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 2E-12 4.3E-17 102.0 13.7 106 216-339 3-108 (109)
48 cd04603 CBS_pair_KefB_assoc Th 99.5 9.9E-13 2.2E-17 104.9 12.0 109 56-262 2-110 (111)
49 cd04614 CBS_pair_1 The CBS dom 99.5 1.2E-12 2.6E-17 102.0 12.1 94 216-339 2-95 (96)
50 cd04620 CBS_pair_7 The CBS dom 99.5 1.9E-12 4E-17 103.5 13.3 110 216-339 2-114 (115)
51 cd04641 CBS_pair_28 The CBS do 99.4 1.1E-12 2.3E-17 106.0 11.8 119 56-263 2-120 (120)
52 cd04629 CBS_pair_16 The CBS do 99.4 9.8E-13 2.1E-17 104.8 11.4 112 216-339 2-113 (114)
53 PRK11573 hypothetical protein; 99.4 2.1E-12 4.5E-17 126.5 15.8 131 199-344 183-313 (413)
54 PRK01862 putative voltage-gate 99.4 1.1E-12 2.4E-17 134.2 14.4 128 200-343 444-572 (574)
55 cd04636 CBS_pair_23 The CBS do 99.4 1.7E-12 3.7E-17 106.7 12.9 116 216-339 2-131 (132)
56 cd04590 CBS_pair_CorC_HlyC_ass 99.4 2.4E-12 5.2E-17 102.1 13.3 109 216-339 2-110 (111)
57 cd04621 CBS_pair_8 The CBS dom 99.4 2.3E-12 5E-17 106.9 13.7 116 216-339 2-134 (135)
58 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 2.3E-12 5.1E-17 102.4 13.2 112 216-339 2-113 (114)
59 cd04800 CBS_pair_CAP-ED_DUF294 99.4 2.9E-12 6.3E-17 101.6 13.2 109 216-339 2-110 (111)
60 cd04632 CBS_pair_19 The CBS do 99.4 2.5E-12 5.3E-17 105.0 13.0 118 216-339 2-127 (128)
61 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 3.3E-12 7.3E-17 101.1 13.5 109 216-339 2-110 (111)
62 TIGR00400 mgtE Mg2+ transporte 99.4 8.4E-13 1.8E-17 131.0 11.9 173 41-341 128-305 (449)
63 cd04608 CBS_pair_PALP_assoc Th 99.4 1.3E-12 2.8E-17 106.7 10.9 114 55-264 2-124 (124)
64 PRK07807 inosine 5-monophospha 99.4 1.5E-12 3.2E-17 129.2 13.1 122 201-345 87-208 (479)
65 cd04589 CBS_pair_CAP-ED_DUF294 99.4 4.5E-12 9.7E-17 100.7 13.5 110 216-340 2-111 (111)
66 cd04586 CBS_pair_BON_assoc Thi 99.4 1.7E-12 3.7E-17 107.2 11.4 117 215-339 2-134 (135)
67 cd04588 CBS_pair_CAP-ED_DUF294 99.4 4.6E-12 9.9E-17 100.3 13.3 108 216-339 2-109 (110)
68 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 3.7E-12 8.1E-17 100.8 12.8 109 216-339 2-110 (111)
69 cd04595 CBS_pair_DHH_polyA_Pol 99.4 5.4E-12 1.2E-16 100.0 13.5 108 215-339 2-109 (110)
70 TIGR00400 mgtE Mg2+ transporte 99.4 2.8E-12 6.1E-17 127.2 14.4 123 199-344 127-254 (449)
71 cd04587 CBS_pair_CAP-ED_DUF294 99.4 3.8E-12 8.2E-17 101.2 12.5 111 216-339 2-112 (113)
72 cd04585 CBS_pair_ACT_assoc2 Th 99.4 5.3E-12 1.1E-16 101.5 13.4 116 216-339 2-121 (122)
73 COG4109 Predicted transcriptio 99.4 2E-12 4.3E-17 119.4 11.9 119 203-342 188-306 (432)
74 cd04630 CBS_pair_17 The CBS do 99.4 6.3E-12 1.4E-16 100.5 13.6 112 56-262 2-113 (114)
75 PRK10892 D-arabinose 5-phospha 99.4 2.5E-12 5.3E-17 122.6 13.0 124 42-263 200-323 (326)
76 cd04640 CBS_pair_27 The CBS do 99.4 4.3E-12 9.4E-17 103.5 12.6 112 216-339 2-125 (126)
77 cd04801 CBS_pair_M50_like This 99.4 4.2E-12 9.1E-17 101.4 12.1 111 56-262 2-113 (114)
78 cd04600 CBS_pair_HPP_assoc Thi 99.4 6.2E-12 1.3E-16 101.8 13.2 122 55-262 2-123 (124)
79 cd04622 CBS_pair_9 The CBS dom 99.4 6.2E-12 1.3E-16 100.0 12.9 110 216-339 2-112 (113)
80 cd04639 CBS_pair_26 The CBS do 99.4 7.8E-12 1.7E-16 99.1 13.4 109 56-262 2-110 (111)
81 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 2.3E-11 5.1E-16 120.6 19.6 124 38-267 82-205 (475)
82 cd04635 CBS_pair_22 The CBS do 99.4 4.6E-12 1E-16 102.2 12.0 117 216-339 2-121 (122)
83 cd04625 CBS_pair_12 The CBS do 99.4 9.2E-12 2E-16 98.9 13.2 109 217-339 3-111 (112)
84 cd04606 CBS_pair_Mg_transporte 99.4 4.4E-12 9.5E-17 100.5 11.0 103 220-341 2-109 (109)
85 cd04593 CBS_pair_EriC_assoc_ba 99.4 1.1E-11 2.4E-16 99.1 13.3 112 56-262 2-114 (115)
86 cd04802 CBS_pair_3 The CBS dom 99.4 1.3E-11 2.8E-16 98.1 13.6 110 216-339 2-111 (112)
87 PRK01862 putative voltage-gate 99.4 6.3E-12 1.4E-16 128.6 14.8 131 38-266 441-572 (574)
88 cd04623 CBS_pair_10 The CBS do 99.4 1.5E-11 3.2E-16 97.5 13.8 112 55-262 1-112 (113)
89 cd04615 CBS_pair_2 The CBS dom 99.4 1.4E-11 3.1E-16 97.9 13.6 111 56-262 2-112 (113)
90 cd04596 CBS_pair_DRTGG_assoc T 99.4 1.2E-11 2.6E-16 97.8 13.0 105 56-262 3-107 (108)
91 TIGR00393 kpsF KpsF/GutQ famil 99.4 5.6E-12 1.2E-16 116.7 12.7 113 203-333 155-268 (268)
92 cd04599 CBS_pair_GGDEF_assoc2 99.4 1E-11 2.2E-16 97.3 12.4 102 216-338 2-103 (105)
93 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 1.2E-11 2.6E-16 98.3 12.7 112 55-262 1-113 (114)
94 PRK11543 gutQ D-arabinose 5-ph 99.4 6E-12 1.3E-16 119.7 12.9 123 43-263 196-318 (321)
95 cd04602 CBS_pair_IMPDH_2 This 99.4 1.2E-11 2.5E-16 99.0 12.6 107 216-339 3-113 (114)
96 cd04609 CBS_pair_PALP_assoc2 T 99.4 1.1E-11 2.3E-16 97.9 12.2 108 216-339 2-109 (110)
97 cd04803 CBS_pair_15 The CBS do 99.4 2.1E-11 4.5E-16 98.4 13.8 120 56-262 2-121 (122)
98 cd02205 CBS_pair The CBS domai 99.4 2.3E-11 4.9E-16 95.5 13.6 111 216-339 2-112 (113)
99 cd04631 CBS_pair_18 The CBS do 99.4 1.7E-11 3.7E-16 99.4 13.1 124 56-263 2-125 (125)
100 cd04629 CBS_pair_16 The CBS do 99.4 1.5E-11 3.2E-16 97.9 12.5 112 56-262 2-113 (114)
101 cd04633 CBS_pair_20 The CBS do 99.4 1.2E-11 2.6E-16 99.7 12.1 115 216-339 2-120 (121)
102 cd04643 CBS_pair_30 The CBS do 99.4 1.4E-11 2.9E-16 98.5 12.3 114 56-262 2-115 (116)
103 cd04642 CBS_pair_29 The CBS do 99.4 1.3E-11 2.9E-16 100.5 12.4 124 56-262 2-125 (126)
104 cd04586 CBS_pair_BON_assoc Thi 99.3 1.4E-11 3E-16 101.7 12.5 133 55-262 2-134 (135)
105 cd04584 CBS_pair_ACT_assoc Thi 99.3 1.9E-11 4.1E-16 98.4 12.9 116 216-339 2-120 (121)
106 cd04627 CBS_pair_14 The CBS do 99.3 1.7E-11 3.7E-16 99.4 12.8 120 56-261 2-121 (123)
107 cd04605 CBS_pair_MET2_assoc Th 99.3 3E-11 6.6E-16 95.6 13.9 108 55-262 2-109 (110)
108 PRK05567 inosine 5'-monophosph 99.3 4E-11 8.7E-16 120.0 18.0 177 46-340 89-265 (486)
109 cd04637 CBS_pair_24 The CBS do 99.3 1.4E-11 3.1E-16 99.5 12.2 116 216-339 2-121 (122)
110 cd04620 CBS_pair_7 The CBS dom 99.3 2.7E-11 5.9E-16 96.7 13.7 110 56-262 2-114 (115)
111 cd04607 CBS_pair_NTP_transfera 99.3 3E-11 6.5E-16 96.3 13.9 109 57-262 4-112 (113)
112 cd04601 CBS_pair_IMPDH This cd 99.3 1.1E-11 2.4E-16 97.9 11.2 106 216-339 3-109 (110)
113 cd04588 CBS_pair_CAP-ED_DUF294 99.3 3.4E-11 7.5E-16 95.3 13.9 108 56-262 2-109 (110)
114 cd04636 CBS_pair_23 The CBS do 99.3 2.4E-11 5.1E-16 99.9 13.3 131 56-263 2-132 (132)
115 cd04610 CBS_pair_ParBc_assoc T 99.3 1.9E-11 4E-16 96.2 12.1 105 215-339 2-106 (107)
116 PRK11573 hypothetical protein; 99.3 3.8E-11 8.2E-16 117.7 16.9 167 40-310 183-349 (413)
117 cd04614 CBS_pair_1 The CBS dom 99.3 1.7E-11 3.7E-16 95.4 11.7 94 56-262 2-95 (96)
118 cd04594 CBS_pair_EriC_assoc_ar 99.3 2E-11 4.4E-16 96.0 12.2 100 218-339 4-103 (104)
119 cd04632 CBS_pair_19 The CBS do 99.3 3.4E-11 7.4E-16 98.2 13.7 125 56-262 2-127 (128)
120 COG0517 FOG: CBS domain [Gener 99.3 3E-11 6.4E-16 96.5 13.1 109 215-338 7-117 (117)
121 cd04589 CBS_pair_CAP-ED_DUF294 99.3 3.8E-11 8.3E-16 95.2 13.5 110 56-263 2-111 (111)
122 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.4E-11 3E-16 122.2 13.3 120 202-345 87-206 (475)
123 PRK07107 inosine 5-monophospha 99.3 1.1E-11 2.5E-16 123.6 12.7 122 204-341 95-219 (502)
124 cd04621 CBS_pair_8 The CBS dom 99.3 3.1E-11 6.7E-16 100.1 13.3 133 56-262 2-134 (135)
125 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 4.5E-11 9.7E-16 94.6 13.6 109 56-262 2-110 (111)
126 cd04587 CBS_pair_CAP-ED_DUF294 99.3 3.5E-11 7.6E-16 95.6 12.9 111 56-262 2-112 (113)
127 COG1253 TlyC Hemolysins and re 99.3 3.4E-11 7.4E-16 118.9 15.5 137 190-343 193-329 (429)
128 cd04624 CBS_pair_11 The CBS do 99.3 5.6E-11 1.2E-15 94.4 14.0 110 56-262 2-111 (112)
129 cd04800 CBS_pair_CAP-ED_DUF294 99.3 4.6E-11 9.9E-16 94.7 13.3 109 56-262 2-110 (111)
130 cd04595 CBS_pair_DHH_polyA_Pol 99.3 4.8E-11 1E-15 94.5 13.4 108 55-262 2-109 (110)
131 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 3.9E-11 8.5E-16 95.4 12.8 111 56-262 3-113 (114)
132 cd04635 CBS_pair_22 The CBS do 99.3 3.3E-11 7.1E-16 97.2 12.5 120 56-262 2-121 (122)
133 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 5.5E-11 1.2E-15 93.7 13.5 106 56-262 3-108 (109)
134 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 4.7E-11 1E-15 93.8 12.9 104 56-262 2-105 (106)
135 cd04640 CBS_pair_27 The CBS do 99.3 3.8E-11 8.3E-16 97.9 12.7 119 56-262 2-125 (126)
136 cd04622 CBS_pair_9 The CBS dom 99.3 6.5E-11 1.4E-15 94.0 13.5 111 56-262 2-112 (113)
137 cd04591 CBS_pair_EriC_assoc_eu 99.3 3.6E-11 7.9E-16 95.1 11.9 100 216-339 3-104 (105)
138 cd04606 CBS_pair_Mg_transporte 99.3 4.3E-11 9.3E-16 94.8 12.2 102 60-263 2-108 (109)
139 cd04802 CBS_pair_3 The CBS dom 99.3 8.3E-11 1.8E-15 93.3 13.5 111 55-262 1-111 (112)
140 cd04599 CBS_pair_GGDEF_assoc2 99.3 6.4E-11 1.4E-15 92.8 12.6 102 56-261 2-103 (105)
141 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 9.5E-11 2.1E-15 92.7 13.6 109 56-262 2-110 (111)
142 cd04590 CBS_pair_CorC_HlyC_ass 99.3 9.8E-11 2.1E-15 92.8 13.6 109 56-262 2-110 (111)
143 TIGR01137 cysta_beta cystathio 99.3 5.1E-11 1.1E-15 118.7 14.8 122 200-341 332-453 (454)
144 cd04610 CBS_pair_ParBc_assoc T 99.3 8.2E-11 1.8E-15 92.5 13.0 105 55-262 2-106 (107)
145 cd04626 CBS_pair_13 The CBS do 99.3 7.1E-11 1.5E-15 93.7 12.6 109 56-262 2-110 (111)
146 cd04638 CBS_pair_25 The CBS do 99.3 8.4E-11 1.8E-15 92.5 12.9 104 216-339 2-105 (106)
147 TIGR01302 IMP_dehydrog inosine 99.3 3E-11 6.6E-16 119.7 12.7 120 204-343 81-202 (450)
148 PRK07107 inosine 5-monophospha 99.3 3.7E-11 8.1E-16 119.9 12.7 113 57-264 107-219 (502)
149 PLN02274 inosine-5'-monophosph 99.3 5.9E-11 1.3E-15 118.7 14.1 113 215-344 108-224 (505)
150 TIGR01137 cysta_beta cystathio 99.3 6.6E-11 1.4E-15 117.8 14.2 127 36-264 327-453 (454)
151 cd04625 CBS_pair_12 The CBS do 99.3 1.3E-10 2.8E-15 92.3 13.2 110 56-262 2-111 (112)
152 cd04634 CBS_pair_21 The CBS do 99.3 8.8E-11 1.9E-15 98.2 12.7 115 216-339 2-142 (143)
153 cd04585 CBS_pair_ACT_assoc2 Th 99.3 1E-10 2.2E-15 93.9 12.4 120 56-262 2-121 (122)
154 PRK05567 inosine 5'-monophosph 99.3 6.4E-11 1.4E-15 118.6 13.7 119 204-343 88-206 (486)
155 cd04598 CBS_pair_GGDEF_assoc T 99.3 1.1E-10 2.4E-15 93.7 12.5 113 216-339 2-118 (119)
156 cd04602 CBS_pair_IMPDH_2 This 99.2 1.4E-10 3E-15 92.7 12.6 109 56-262 3-113 (114)
157 cd04609 CBS_pair_PALP_assoc2 T 99.2 1.7E-10 3.6E-15 91.0 12.6 109 56-263 2-110 (110)
158 cd04637 CBS_pair_24 The CBS do 99.2 1.7E-10 3.7E-15 93.1 13.0 121 56-263 2-122 (122)
159 PLN02274 inosine-5'-monophosph 99.2 1.2E-10 2.5E-15 116.6 14.4 116 55-266 108-223 (505)
160 cd04601 CBS_pair_IMPDH This cd 99.2 1.5E-10 3.2E-15 91.4 12.2 107 55-262 2-109 (110)
161 cd04633 CBS_pair_20 The CBS do 99.2 1.1E-10 2.5E-15 93.9 11.7 119 56-262 2-120 (121)
162 cd02205 CBS_pair The CBS domai 99.2 3.4E-10 7.4E-15 88.7 13.9 111 56-262 2-112 (113)
163 COG0517 FOG: CBS domain [Gener 99.2 2.9E-10 6.2E-15 90.8 13.0 108 55-260 7-116 (117)
164 PTZ00314 inosine-5'-monophosph 99.2 9.3E-11 2E-15 117.2 12.2 118 205-343 98-219 (495)
165 cd04584 CBS_pair_ACT_assoc Thi 99.2 4.4E-10 9.6E-15 90.3 13.5 119 56-262 2-120 (121)
166 PTZ00314 inosine-5'-monophosph 99.2 7.4E-10 1.6E-14 110.7 16.9 114 55-264 104-217 (495)
167 COG4536 CorB Putative Mg2+ and 99.2 8.7E-11 1.9E-15 109.7 9.3 129 200-343 197-325 (423)
168 PRK14869 putative manganese-de 99.2 3.2E-10 7E-15 115.4 14.5 131 203-343 68-305 (546)
169 TIGR01302 IMP_dehydrog inosine 99.2 4.8E-10 1E-14 111.2 14.9 121 45-265 81-201 (450)
170 COG4109 Predicted transcriptio 99.2 2.4E-10 5.2E-15 105.8 11.6 119 44-265 188-306 (432)
171 COG1253 TlyC Hemolysins and re 99.2 1E-09 2.3E-14 108.3 16.6 166 40-311 202-367 (429)
172 cd04594 CBS_pair_EriC_assoc_ar 99.2 5.1E-10 1.1E-14 87.9 11.7 100 58-262 4-103 (104)
173 cd04634 CBS_pair_21 The CBS do 99.1 9.9E-10 2.2E-14 91.8 13.2 140 56-262 2-142 (143)
174 TIGR00393 kpsF KpsF/GutQ famil 99.1 4.2E-10 9E-15 104.2 11.4 113 44-256 155-268 (268)
175 COG2239 MgtE Mg/Co/Ni transpor 99.1 3.8E-10 8.2E-15 110.6 11.6 123 198-343 127-254 (451)
176 cd04638 CBS_pair_25 The CBS do 99.1 1.6E-09 3.4E-14 85.2 12.9 104 56-262 2-105 (106)
177 cd04598 CBS_pair_GGDEF_assoc T 99.1 1.6E-09 3.5E-14 86.9 12.3 113 56-262 2-118 (119)
178 cd04592 CBS_pair_EriC_assoc_eu 99.1 1.2E-09 2.7E-14 90.4 11.8 106 216-323 2-117 (133)
179 cd04591 CBS_pair_EriC_assoc_eu 99.1 1.1E-09 2.4E-14 86.6 10.0 100 56-262 3-104 (105)
180 COG4535 CorC Putative Mg2+ and 99.0 7E-10 1.5E-14 97.5 7.4 127 200-343 64-190 (293)
181 cd04592 CBS_pair_EriC_assoc_eu 99.0 4.6E-09 9.9E-14 87.0 11.6 48 56-111 2-49 (133)
182 COG4536 CorB Putative Mg2+ and 99.0 1.1E-08 2.5E-13 95.7 13.6 166 40-310 196-361 (423)
183 PF00571 CBS: CBS domain CBS d 98.9 6E-09 1.3E-13 72.8 7.6 56 205-265 1-56 (57)
184 PF00571 CBS: CBS domain CBS d 98.8 9.6E-09 2.1E-13 71.7 6.4 53 288-342 4-56 (57)
185 COG4535 CorC Putative Mg2+ and 98.8 3.6E-08 7.8E-13 86.9 10.7 166 39-310 62-227 (293)
186 COG2239 MgtE Mg/Co/Ni transpor 98.8 4.2E-08 9E-13 96.4 11.6 117 46-267 134-255 (451)
187 TIGR01186 proV glycine betaine 98.7 3.1E-07 6.8E-12 88.6 14.7 109 217-344 252-360 (363)
188 KOG2550 IMP dehydrogenase/GMP 98.5 1.8E-07 3.9E-12 88.4 7.5 109 216-341 117-227 (503)
189 PRK10070 glycine betaine trans 98.5 1.2E-06 2.5E-11 85.7 13.2 124 203-346 274-397 (400)
190 TIGR01186 proV glycine betaine 98.4 5.6E-06 1.2E-10 80.0 14.9 107 58-266 253-359 (363)
191 KOG0474 Cl- channel CLC-7 and 98.3 1.6E-06 3.4E-11 86.1 7.7 133 202-340 581-745 (762)
192 PRK10070 glycine betaine trans 98.3 1.2E-05 2.5E-10 78.7 13.3 107 59-267 289-395 (400)
193 KOG0474 Cl- channel CLC-7 and 98.2 5E-06 1.1E-10 82.6 9.2 186 22-264 561-746 (762)
194 KOG2550 IMP dehydrogenase/GMP 98.2 3.7E-06 7.9E-11 79.8 7.6 113 54-264 115-227 (503)
195 KOG0475 Cl- channel CLC-3 and 97.9 0.00011 2.4E-09 73.5 11.7 135 205-342 545-695 (696)
196 cd04597 CBS_pair_DRTGG_assoc2 97.9 3.1E-05 6.6E-10 61.9 6.6 55 203-262 58-112 (113)
197 smart00116 CBS Domain in cysta 97.8 6.8E-05 1.5E-09 48.8 6.3 47 294-341 2-48 (49)
198 cd04597 CBS_pair_DRTGG_assoc2 97.8 4.3E-05 9.3E-10 61.1 5.9 55 279-339 58-112 (113)
199 smart00116 CBS Domain in cysta 97.8 0.0001 2.2E-09 48.0 6.1 47 217-264 2-48 (49)
200 COG4175 ProV ABC-type proline/ 97.5 0.00023 4.9E-09 66.3 6.9 131 181-344 255-385 (386)
201 KOG0475 Cl- channel CLC-3 and 97.4 0.0013 2.9E-08 65.9 11.0 137 56-264 557-694 (696)
202 TIGR03415 ABC_choXWV_ATP choli 96.9 0.0059 1.3E-07 59.5 9.9 111 200-343 271-381 (382)
203 KOG0476 Cl- channel CLC-2 and 95.3 0.11 2.3E-06 53.7 9.6 61 202-266 587-648 (931)
204 KOG0476 Cl- channel CLC-2 and 94.7 0.36 7.9E-06 50.0 11.3 63 42-113 586-648 (931)
205 KOG2118 Predicted membrane pro 93.8 0.099 2.1E-06 52.7 5.4 138 189-342 190-328 (498)
206 COG4175 ProV ABC-type proline/ 93.7 0.28 6.1E-06 46.2 7.6 49 215-265 335-383 (386)
207 COG1125 OpuBA ABC-type proline 91.1 0.37 8.1E-06 44.1 4.9 88 2-109 218-307 (309)
208 COG1125 OpuBA ABC-type proline 90.6 0.73 1.6E-05 42.2 6.3 63 200-263 246-308 (309)
209 TIGR03415 ABC_choXWV_ATP choli 86.0 1.8 3.8E-05 42.3 6.2 47 216-265 334-380 (382)
210 KOG2118 Predicted membrane pro 82.3 2.2 4.7E-05 43.2 5.1 130 38-265 198-328 (498)
211 PRK11388 DNA-binding transcrip 58.9 35 0.00075 35.7 7.7 100 226-334 61-163 (638)
212 PF05198 IF3_N: Translation in 36.3 61 0.0013 23.8 3.8 25 317-342 14-38 (76)
213 PF11112 PyocinActivator: Pyoc 28.5 2E+02 0.0044 21.1 5.5 46 63-115 27-72 (76)
214 PF14044 NETI: NETI protein 22.1 1E+02 0.0022 21.3 2.6 22 59-80 3-24 (57)
215 PF14827 Cache_3: Sensory doma 21.0 97 0.0021 24.3 2.8 18 316-334 92-109 (116)
216 COG2216 KdpB High-affinity K+ 20.9 1.3E+02 0.0029 30.6 4.2 37 301-339 413-449 (681)
No 1
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.76 E-value=8.4e-18 Score=148.57 Aligned_cols=125 Identities=25% Similarity=0.429 Sum_probs=115.9
Q ss_pred CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278 (351)
Q Consensus 199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~ 278 (351)
..+..+|+++|+ ++++++.+++++.|+..+|.+++++..||+|++ +++|++|.+|+..+++++. .+
T Consensus 168 siPk~~V~~~~s----~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g~--------~~ 233 (294)
T COG2524 168 SIPKEKVKNLMS----KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANGN--------LD 233 (294)
T ss_pred ecCcchhhhhcc----CCceEecCCccHHHHHHHHHHcCccCCceecCC--ceEEEEEHHHHHHHHHcCC--------cc
Confidence 366789999999 669999999999999999999999999999985 9999999999999998873 46
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.++++ +|. ++++++++|+.+.||+++|..+++.+|.|+|. +|+++|+||.+||+..+..
T Consensus 234 ~kV~~----~M~-k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 234 AKVSD----YMR-KNVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIAG 292 (294)
T ss_pred ccHHH----Hhc-cCCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhhc
Confidence 78999 797 99999999999999999999999999999998 8999999999999998754
No 2
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.74 E-value=1.7e-16 Score=153.02 Aligned_cols=234 Identities=23% Similarity=0.329 Sum_probs=185.7
Q ss_pred HHHHHhcc-CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHh
Q 018713 36 TLTAAFAR-IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET 114 (351)
Q Consensus 36 ~~~~~~~~-~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~ 114 (351)
.+..++.. .++..++. .++++.++...++.+|+..+..+.+++.||+|.+. .++.|++++.|++..+...
T Consensus 58 ~~~~~~~~~~~~~~~p~--~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~-------~~~~g~~~~~d~i~~~~~~ 128 (381)
T KOG1764|consen 58 TLSKFMKSHTCYDLLPT--SSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKK-------QQFVGMLTITDFITVLLRY 128 (381)
T ss_pred HHHHHHhccCcccccCC--cceeEEeeCCCcHHHHHHHHHhhceeeeccccCcc-------ceeEEEEEHHHHHHHHHHh
Confidence 44455444 44444443 58899999999999999999999999999999774 3899999999999877666
Q ss_pred hHHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHh
Q 018713 115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVI 194 (351)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 194 (351)
.... ...+....+
T Consensus 129 ~~~~-------------------------------------------------------------------~~~~~~~~~ 141 (381)
T KOG1764|consen 129 YKSK-------------------------------------------------------------------SSLDNIEVL 141 (381)
T ss_pred hccC-------------------------------------------------------------------CcHHHHhhh
Confidence 4320 011111222
Q ss_pred hhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhh
Q 018713 195 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD 274 (351)
Q Consensus 195 ~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~ 274 (351)
.........++..+.....++++..+.+..++.++...+.+++++++||.|.+.+.+..++|+..|++++.......++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~ 221 (381)
T KOG1764|consen 142 EDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLP 221 (381)
T ss_pred hhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccH
Confidence 22233444555555554444666999999999999999999999999999955679999999999999998776544467
Q ss_pred hhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCccccc
Q 018713 275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 348 (351)
Q Consensus 275 ~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~~~~ 348 (351)
.+...++.+++++.+ ..+..+..++++.+|+++|..++++.+||||. .|+.+|+++..|++....+..+..
T Consensus 222 ~~l~~s~~dl~ig~~--~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-~g~~v~~~s~~Dv~~l~~~~~~~~ 292 (381)
T KOG1764|consen 222 SLLSKSLSDLGIGTW--SNIASISEDTPVIEALKIMSERRISALPVVDE-NGKKVGNYSRFDVIHLAREGTYNN 292 (381)
T ss_pred HHhhCCHHHhCcchh--hhheeecCCCcHHHHHHHHHhcCcCcceEEcC-CCceecceehhhhhhhhhcCccCc
Confidence 788999999998744 57999999999999999999999999999999 888899999999999998887654
No 3
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.71 E-value=1.2e-16 Score=141.38 Aligned_cols=122 Identities=18% Similarity=0.308 Sum_probs=106.7
Q ss_pred ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA 121 (351)
Q Consensus 42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~ 121 (351)
.+.++.++|. ++++++.+++|+.+|.+.|.+++++++||+|.+ +++|+++..||...+.+
T Consensus 170 Pk~~V~~~~s---~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d---------k~vGiit~~dI~~aia~-------- 229 (294)
T COG2524 170 PKEKVKNLMS---KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD---------KIVGIITLSDIAKAIAN-------- 229 (294)
T ss_pred Ccchhhhhcc---CCceEecCCccHHHHHHHHHHcCccCCceecCC---------ceEEEEEHHHHHHHHHc--------
Confidence 4555666665 899999999999999999999999999999976 89999999998843311
Q ss_pred hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713 122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK 201 (351)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~ 201 (351)
...
T Consensus 230 -----------------------------------------------------------------------------g~~ 232 (294)
T COG2524 230 -----------------------------------------------------------------------------GNL 232 (294)
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 134
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
..+|+++|+ ++++++..++.+.+|+++|.++++.++.|+|. +|+++|+||++||+..+.
T Consensus 233 ~~kV~~~M~----k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 233 DAKVSDYMR----KNVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIA 291 (294)
T ss_pred cccHHHHhc----cCCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhh
Confidence 578999999 55999999999999999999999999999998 489999999999998874
No 4
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.67 E-value=6.1e-16 Score=139.22 Aligned_cols=136 Identities=20% Similarity=0.357 Sum_probs=116.5
Q ss_pred HHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713 36 TLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (351)
Q Consensus 36 ~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~ 115 (351)
.+...+.+.++.++|+ ++++++++++|+.+|.+.|.+|+++.+||+|++. +++|+|+..|+....
T Consensus 237 a~~R~~~~LtcadIMS---rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~--------rl~GiVt~~dl~~~a---- 301 (382)
T COG3448 237 ALRRRMGELTCADIMS---RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHR--------RLVGIVTQRDLLKHA---- 301 (382)
T ss_pred HHHHHhccccHHHhcC---ccceecCCcCChHHHHHHHHHcCccccccccccc--------ceeeeeeHHHHhhcc----
Confidence 4556677899999997 8999999999999999999999999999999875 899999999988321
Q ss_pred HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhh
Q 018713 116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL 195 (351)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ 195 (351)
.+..++.++
T Consensus 302 -----------------------------------------------------------------------~~~p~qrlr 310 (382)
T COG3448 302 -----------------------------------------------------------------------RPSPFQRLR 310 (382)
T ss_pred -----------------------------------------------------------------------CcchHHHhh
Confidence 011222222
Q ss_pred hcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 196 ~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
.....+++.+|+ .++.++.++++..+.+-.+.+.+.|++||+|.+ |+++|||||+|++..+.
T Consensus 311 ---~~~~~~vk~imt----~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~-g~lvGIvsQtDliaal~ 372 (382)
T COG3448 311 ---FLRPPTVKGIMT----TPVVTVRPDTPAVELVPRLADEGLHALPVLDAA-GKLVGIVSQTDLIAALY 372 (382)
T ss_pred ---ccCCCccccccc----CcceeecCCCcHHHHHHHhhcCCcceeeEEcCC-CcEEEEeeHHHHHHHHH
Confidence 356688999999 669999999999999999999999999999994 99999999999998874
No 5
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.65 E-value=9.1e-16 Score=138.11 Aligned_cols=133 Identities=20% Similarity=0.361 Sum_probs=113.9
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
....+..+||+++ ++++++++++.+|.++|++++++.+||+|+ +.+++|+|+++|+++...-.. ...++.+...
T Consensus 242 ~~~LtcadIMSrd----Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-~~rl~GiVt~~dl~~~a~~~p-~qrlr~~~~~ 315 (382)
T COG3448 242 MGELTCADIMSRD----VVTVSTDTSIDHARKLLQEHRIKALPVLDE-HRRLVGIVTQRDLLKHARPSP-FQRLRFLRPP 315 (382)
T ss_pred hccccHHHhcCcc----ceecCCcCChHHHHHHHHHcCccccccccc-ccceeeeeeHHHHhhccCcch-HHHhhccCCC
Confidence 4456889999955 999999999999999999999999999999 489999999999987553211 1123334566
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
+++. +|+ .++.++.++++..+.+-+|.+.+.|++||+|+ .|+++||||.+|++..+...
T Consensus 316 ~vk~----imt-~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 316 TVKG----IMT-TPVVTVRPDTPAVELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred cccc----ccc-CcceeecCCCcHHHHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHHHH
Confidence 7777 696 89999999999999999999999999999999 99999999999999887543
No 6
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.64 E-value=2.5e-15 Score=123.78 Aligned_cols=140 Identities=23% Similarity=0.352 Sum_probs=118.0
Q ss_pred hhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713 184 DRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (351)
Q Consensus 184 ~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~ 263 (351)
-++.+.+++.+.+.. ....+++.+|+ .|++.+++++++.++.++|.+++++.+||++++ +++|-||..+|.+.
T Consensus 47 lSt~k~Il~aL~e~e-~~~ita~~iM~----spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~--k~VGsItE~~iv~~ 119 (187)
T COG3620 47 LSTVKRILEALEEAE-KTRITAKTIMH----SPVVSVSPDDSISDVVNLMRDKGISQLPVIEED--KVVGSITENDIVRA 119 (187)
T ss_pred HHHHHHHHHHHHHhh-cceEeHhhhcc----CCeeEECchhhHHHHHHHHHHcCCccCceeeCC--eeeeeecHHHHHHH
Confidence 345677777776533 35678999999 779999999999999999999999999999874 99999999999999
Q ss_pred hhcCCCCchhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 264 LEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 264 l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
+.++. +.+....+.+ +|. .++++|++++++..+.++|..++ ++.|+++ |+++|+||+.||++++.+
T Consensus 120 ~le~~-----e~i~~~~vr~----vM~-e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e~--G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 120 LLEGM-----ESIRSLRVRE----VMG-EPFPTVSPDESLNVISQLLEEHP--AVLVVEN--GKVVGIITKADIMKLLAG 185 (187)
T ss_pred Hhccc-----cchhhhhHHH----Hhc-CCCCcCCCCCCHHHHHHHHhhCC--eEEEEeC--CceEEEEeHHHHHHHHhc
Confidence 86542 2345667788 696 99999999999999999988775 5778865 999999999999999876
Q ss_pred c
Q 018713 344 P 344 (351)
Q Consensus 344 ~ 344 (351)
.
T Consensus 186 ~ 186 (187)
T COG3620 186 T 186 (187)
T ss_pred c
Confidence 4
No 7
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=3.1e-14 Score=115.10 Aligned_cols=116 Identities=16% Similarity=0.253 Sum_probs=92.4
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc-c-ccCccCCCC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD-L-GLPFMSSDE 293 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~-L-~~~~m~~~~ 293 (351)
++.++++++++.++++.|.+++++++||+|+ +|+++|+++..|++.+...+.. .. ...++.+ + ..+.|. .+
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~-~~----~~~~~~~~~~~~~~~~-~~ 74 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAY-NN----LDLTVGEALERRSQDF-EG 74 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCcc-cc----ccCCHHHHHhhcccCC-CC
Confidence 5788999999999999999999999999988 4899999999999977643321 00 0111111 0 000233 56
Q ss_pred ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..|+++
T Consensus 75 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~ 119 (120)
T cd04641 75 VRTCSPDDCLRTIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQ 119 (120)
T ss_pred CeEEcCCCcHHHHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhc
Confidence 789999999999999999999999999998 799999999999875
No 8
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=3.8e-14 Score=113.11 Aligned_cols=108 Identities=11% Similarity=0.222 Sum_probs=92.9
Q ss_pred cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceE
Q 018713 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (351)
Q Consensus 217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~ 296 (351)
+.++++++++.++++.|.+++.+.+||+|+ +++++|+|+..|+.+...+. ....++.+ +|. .++.+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~--------~~~~~v~~----~~~-~~~~~ 68 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGPND--------YETLKVCE----VYI-VPVPI 68 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhcccc--------ccccChhh----eee-cCCcE
Confidence 678999999999999999889999999998 48999999999997743111 12345777 475 77889
Q ss_pred EcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 297 V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+.+++++.+++++|.+++.+.+||+|+ +|+++|+||.+|+++
T Consensus 69 v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~ 110 (111)
T cd04603 69 VYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR 110 (111)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence 999999999999999999999999998 899999999999985
No 9
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=3.2e-14 Score=111.52 Aligned_cols=95 Identities=15% Similarity=0.222 Sum_probs=85.0
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.++.+.|.+++++.+||+|+++|+++|++|..|+.+.+ . ++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~---------------------------~-~~ 53 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL---------------------------R-LV 53 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe---------------------------e-eE
Confidence 3788999999999999999999999999986337899999999996533 1 56
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCC-CeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~-g~liGiIt~~DIl~ 339 (351)
++.+++++.+|+++|.+++++++||+|+ + |+++|+||.+|++.
T Consensus 54 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~ 97 (98)
T cd04618 54 SIHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILK 97 (98)
T ss_pred EeCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhc
Confidence 8999999999999999999999999998 6 89999999999874
No 10
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=6.3e-14 Score=112.33 Aligned_cols=111 Identities=19% Similarity=0.422 Sum_probs=95.2
Q ss_pred cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceE
Q 018713 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (351)
Q Consensus 217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~ 296 (351)
+.++++++++.++++.|.+.+...+||+|+ +|+++|+++..|+++.+...... ....++.+ +|. .++++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~~-----~~~~~v~~----~~~-~~~~~ 71 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGGP-----GCTAPVEN----VMT-RAVVS 71 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCCC-----cccCCHHH----Hhc-CCCee
Confidence 678999999999999999999999999998 48999999999998866431110 13456777 475 78889
Q ss_pred EcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 297 V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+.+++++.++++.|.+++.+++||+|+ +|+++|+|+.+|+++
T Consensus 72 v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 72 CRPGDLLHDVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK 113 (114)
T ss_pred ECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence 999999999999999999999999997 789999999999875
No 11
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.56 E-value=9.6e-14 Score=133.98 Aligned_cols=200 Identities=18% Similarity=0.297 Sum_probs=150.8
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
++++++.+..++.++...+.+++++++||+|.+.+ .++.+++..-|+.++.......
T Consensus 162 ~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~-------~v~~ilt~~rIl~~l~~~~~~~---------------- 218 (381)
T KOG1764|consen 162 PPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETG-------EVLYILTQRRILKFLWLNGRLL---------------- 218 (381)
T ss_pred CCceeecCcHHHHHHHHHHHhCCccceeeeccccc-------ceeeehhHHHHHHHHHHhhccc----------------
Confidence 44499999999999999999999999999996543 8999999999997765543211
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
. + ..+...++.|.-... |
T Consensus 219 ----------------------------------------------------~--~-------~~~l~~s~~dl~ig~-~ 236 (381)
T KOG1764|consen 219 ----------------------------------------------------P--L-------PSLLSKSLSDLGIGT-W 236 (381)
T ss_pred ----------------------------------------------------c--c-------HHHhhCCHHHhCcch-h
Confidence 0 0 001122333322211 3
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhh-ccCcccccccCccCCCC
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII-ASQPISDLGLPFMSSDE 293 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l-~~~~v~~L~~~~m~~~~ 293 (351)
..+..+..++++.+|++.|...+++.+||+|. +|+.+|+++..|+.....++. +..+... ........+ .....
T Consensus 237 ~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-~g~~v~~~s~~Dv~~l~~~~~-~~~~~~~~l~~~~~~~~---~~~~~ 311 (381)
T KOG1764|consen 237 SNIASISEDTPVIEALKIMSERRISALPVVDE-NGKKVGNYSRFDVIHLAREGT-YNNLDLSCLSEALSHRP---IRFEG 311 (381)
T ss_pred hhheeecCCCcHHHHHHHHHhcCcCcceEEcC-CCceecceehhhhhhhhhcCc-cCccchhHHHHHhhhcc---cccCc
Confidence 45889999999999999999999999999998 478899999999987776543 2221111 011111111 12256
Q ss_pred ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345 (351)
Q Consensus 294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~ 345 (351)
+++|+++.++.+++..|..+++|+++|||+ +|.++|+||..||+.++....
T Consensus 312 vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~-~~~l~GvvSLsDil~~l~~~p 362 (381)
T KOG1764|consen 312 VVTCRPTSTLAEVIDKLVAHRVHRLWVVDE-DGVLVGVISLSDILSYLVLTP 362 (381)
T ss_pred cEEEeecchHHHHHHHHHhcCceEEEEEcC-CCcEEEEeeHHHHHHHHHhCc
Confidence 899999999999999999999999999999 999999999999999987664
No 12
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.56 E-value=4.3e-14 Score=132.25 Aligned_cols=129 Identities=12% Similarity=0.224 Sum_probs=109.2
Q ss_pred CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhc
Q 018713 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA 277 (351)
Q Consensus 198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~ 277 (351)
-.+...+|+++|++. .++.++++++++.++++.+.+++++++||++++.++++|+|+.+|++..+.... .
T Consensus 62 l~l~~~~V~diMtpr--~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~--------~ 131 (292)
T PRK15094 62 MDIADQRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA--------E 131 (292)
T ss_pred hccCCCEEeEEccch--HHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC--------C
Confidence 348889999999954 569999999999999999999999999999863368999999999987653211 1
Q ss_pred cCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 278 ~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
...+.+ +| ++++++++++++.++++.|.+++.+.+||+|+ .|.++|+||.+||++.+.+
T Consensus 132 ~~~l~~----l~--r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 132 AFSMDK----VL--RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG 190 (292)
T ss_pred cCCHHH----Hc--CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhC
Confidence 223566 46 45668999999999999999999999999998 8999999999999998865
No 13
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=7e-14 Score=112.78 Aligned_cols=112 Identities=18% Similarity=0.369 Sum_probs=94.2
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCC-CCc
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DEV 294 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~-~~v 294 (351)
++.++++++++.++++.|..++...+||+|++ ++++|+|+..|+++....... +...++.+ +|.. +++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~------~~~~~~~~----~~~~~~~~ 70 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGAD------LQKVPVGV----IMTRMPNI 70 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCC------ccCCCHHH----HhCCCCCc
Confidence 57889999999999999998999999999984 799999999999887753221 12345666 4642 368
Q ss_pred eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCC---CeEEEEEeHHHHHH
Q 018713 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQ---KKIVGNVSIRDIRH 339 (351)
Q Consensus 295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~---g~liGiIt~~DIl~ 339 (351)
+++++++++.+++++|.+++.+++||+|+ + |+++|+||.+||++
T Consensus 71 ~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 71 TTTTPEESVLEAAKKLIEHQVDSLPVVEK-VDEGLEVIGRITKTNITK 117 (118)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEeeEEeC-CCccceEEEEEEhhheec
Confidence 89999999999999999999999999998 5 69999999999875
No 14
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.55 E-value=6.4e-15 Score=149.78 Aligned_cols=271 Identities=15% Similarity=0.196 Sum_probs=166.8
Q ss_pred CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHH---h-
Q 018713 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA---A- 119 (351)
Q Consensus 44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~---~- 119 (351)
.++.++|. ++++++++++++.+|++.|.+++++.+||+|+++ +++|+|+..||..++....+.. .
T Consensus 68 ~~V~dim~---~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g--------~l~Givt~~di~~~~~~~~~~~~~~~~ 136 (546)
T PRK14869 68 PQVRDLEI---DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEG--------KLLGLVSLSDLARAYMDILDPEILSKS 136 (546)
T ss_pred CcHHHhcC---CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCC--------EEEEEEEHHHHHHHHHhhcchhhhhhc
Confidence 67788886 6899999999999999999999999999999753 8999999999998776643210 0
Q ss_pred ------------hhhcccccc---------cccccc----ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccC
Q 018713 120 ------------AAFSVGTAT---------AAGVGT----GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKG 174 (351)
Q Consensus 120 ------------~~~~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (351)
.++..+... .+.+.. +.+.+...+..|.+...+...+.+++.+..++||..+...
T Consensus 137 ~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~ 216 (546)
T PRK14869 137 PTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSED 216 (546)
T ss_pred CCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHH
Confidence 000000000 000000 0011111223344444444444445444457777654221
Q ss_pred CC---CCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhh-ccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCC
Q 018713 175 AG---KDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIK-SYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD 250 (351)
Q Consensus 175 ~~---~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~-~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~ 250 (351)
.. .+...+.=.+..|.++... ......+|.++|+ .+ +.++++++++.++.+.|.+++++++||+|+ +|+
T Consensus 217 v~~la~~~~i~ii~t~~dt~~t~~--~l~~~~~V~~iM~~~~----~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-~g~ 289 (546)
T PRK14869 217 VLELAKENGVTVISTPYDTFTTAR--LINQSIPVSYIMTTED----LVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-DGK 289 (546)
T ss_pred HHHHHHhCCCeEEEecccHHHHHH--HhhcCCCHHHhccCCC----cEEECCCCcHHHHHHHHHhcCCCceEEEcC-CCC
Confidence 00 0000011112233443333 2344679999998 55 899999999999999999999999999998 489
Q ss_pred EEEEEeHHHHHHHhhc------CCCCch-hhh---------hccCcccccccCccCCCCceEE---cCCCcHHHHHHHHH
Q 018713 251 IKNYITQSAVVQGLEG------CKGRDW-FDI---------IASQPISDLGLPFMSSDEVITI---QSNELILEAFKRMK 311 (351)
Q Consensus 251 liGiIt~~dil~~l~~------~~~~~~-l~~---------l~~~~v~~L~~~~m~~~~v~~V---~~~~~l~~al~~m~ 311 (351)
++|+||..|+++.... +..... ... +...++++ +++ ..++.+ +...+...+.++|.
T Consensus 290 lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~----~~~-~~pi~~~~~~~gst~tiv~~~~~ 364 (546)
T PRK14869 290 VVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIIDHHRLGD----IQT-SNPIFFRNEPVGSTSTIVARMYR 364 (546)
T ss_pred EEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEecCCccCC----CCC-CCCcEEEeeeeeeHHHHHHHHHH
Confidence 9999999999886532 110000 000 11123333 344 333333 33566678888899
Q ss_pred hcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 312 DNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 312 ~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++++...|++.. .-+.|+++-++.++
T Consensus 365 ~~~i~~~~~ia~--~ll~gIlsDT~~f~ 390 (546)
T PRK14869 365 ENGIEPSPEIAG--LLLAAILSDTLLFK 390 (546)
T ss_pred HcCCCCCHHHHH--HHHHHHHHHhcCcc
Confidence 999887777754 56778877766654
No 15
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.54 E-value=7.9e-14 Score=136.46 Aligned_cols=126 Identities=11% Similarity=0.200 Sum_probs=109.4
Q ss_pred CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278 (351)
Q Consensus 199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~ 278 (351)
.+...+|+++|++. .++.+++.++++.++++.+.+++++++||++++.++++|+|+.+|++.++... .
T Consensus 187 ~l~~~~v~diMtpr--~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~----------~ 254 (408)
T TIGR03520 187 SFGNTDTKQVMRPR--LDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK----------N 254 (408)
T ss_pred ccCCCEeeeeCCch--HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC----------C
Confidence 47889999999965 67999999999999999999999999999987446899999999998765321 1
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.++.+ +| +++.+|++++++.++++.|.+++.+.++|+|+ .|..+|+||.+||++.+.+
T Consensus 255 ~~l~~----~~--~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 255 FDWQS----LL--REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred CCHHH----Hc--CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhC
Confidence 23555 35 57789999999999999999999999999998 8999999999999998853
No 16
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=2.2e-13 Score=108.74 Aligned_cols=109 Identities=22% Similarity=0.352 Sum_probs=94.0
Q ss_pred cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceE
Q 018713 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (351)
Q Consensus 217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~ 296 (351)
+.++.+++++.++++.|.+.+.+.++|+|++ |+++|+++.+|+++.+.+... ...++.+ +|. .++.+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~-------~~~~v~~----~~~-~~~~~ 70 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLS-------LDDPVSE----VMN-RNPIT 70 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCC-------cCCCHHH----hhc-CCCEE
Confidence 6779999999999999998899999999884 899999999999877654321 2345777 475 77889
Q ss_pred EcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 297 V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+.+++++.++++.|.+++.+.+||+++ +|+++|+||.+||+.
T Consensus 71 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 112 (113)
T cd04607 71 AKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLLS 112 (113)
T ss_pred EcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence 999999999999999999999999997 799999999999863
No 17
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.53 E-value=1.3e-13 Score=113.60 Aligned_cols=121 Identities=26% Similarity=0.412 Sum_probs=102.6
Q ss_pred cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (351)
Q Consensus 43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~ 122 (351)
.+++..+|. +++++|+|++++.+|+++|..++++.+||++++ +++|-|+-.+|+..+++..
T Consensus 64 ~ita~~iM~---spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~---------k~VGsItE~~iv~~~le~~------- 124 (187)
T COG3620 64 RITAKTIMH---SPVVSVSPDDSISDVVNLMRDKGISQLPVIEED---------KVVGSITENDIVRALLEGM------- 124 (187)
T ss_pred eEeHhhhcc---CCeeEECchhhHHHHHHHHHHcCCccCceeeCC---------eeeeeecHHHHHHHHhccc-------
Confidence 467788887 899999999999999999999999999999875 8999999999996654432
Q ss_pred ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~ 202 (351)
+....
T Consensus 125 ---------------------------------------------------------------------------e~i~~ 129 (187)
T COG3620 125 ---------------------------------------------------------------------------ESIRS 129 (187)
T ss_pred ---------------------------------------------------------------------------cchhh
Confidence 11345
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
.+|.++|. .++.+++++.++..+-.++.. ...+.|++ +|+++||||+.|+++.+.
T Consensus 130 ~~vr~vM~----e~fP~Vs~~~~l~vI~~LL~~--~~AVlV~e--~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 130 LRVREVMG----EPFPTVSPDESLNVISQLLEE--HPAVLVVE--NGKVVGIITKADIMKLLA 184 (187)
T ss_pred hhHHHHhc----CCCCcCCCCCCHHHHHHHHhh--CCeEEEEe--CCceEEEEeHHHHHHHHh
Confidence 78999999 789999999999998888865 45778885 469999999999998874
No 18
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.53 E-value=1.5e-13 Score=130.60 Aligned_cols=123 Identities=20% Similarity=0.321 Sum_probs=105.8
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v 281 (351)
..+|+++|.++ .++.++++++++.++++.|.+++...+||+|+ +|+++|+|+..|+.+.+..... ...++
T Consensus 196 ~~~V~~im~~~--~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~~-------~~~~v 265 (321)
T PRK11543 196 LNKVHHLMRRD--DAIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGGA-------LTTPV 265 (321)
T ss_pred HhHHHHHhccC--CCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCCC-------cCCcH
Confidence 47899999932 23899999999999999999888899999998 4899999999999887643221 23457
Q ss_pred cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 018713 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 340 (351)
Q Consensus 282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~ 340 (351)
.+ +|. ++++++.+++++.++++.|.+++..++||+|+ +|+++|+||..||+++
T Consensus 266 ~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 266 NE----AMT-RGGTTLQAQSRAIDAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA 318 (321)
T ss_pred HH----hcC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence 77 586 78889999999999999999999999999997 7899999999999864
No 19
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.52 E-value=2.1e-13 Score=130.01 Aligned_cols=124 Identities=18% Similarity=0.269 Sum_probs=105.4
Q ss_pred CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCc
Q 018713 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (351)
Q Consensus 201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~ 280 (351)
...+|+++|.+. +++.++++++++.++++.|.+++...+||+|+ +|+++|+||..|+.+.+..+.. +...+
T Consensus 200 ~~~~V~dim~~~--~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~~~------~~~~~ 270 (326)
T PRK10892 200 LLLRVSDIMHTG--DEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMGID------LRQAS 270 (326)
T ss_pred ccCcHHHHhCCC--CCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcCCC------cccCC
Confidence 556899999941 26999999999999999999888888888887 4899999999999876643311 13457
Q ss_pred ccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 018713 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 340 (351)
Q Consensus 281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~ 340 (351)
+.+ +|. +++.++.+++++.+|++.|.+++++.+||+++ |+++|+||..||++.
T Consensus 271 v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 271 IAD----VMT-PGGIRVRPGILAVDALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred HHH----hcC-CCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 888 586 88999999999999999999999999999986 899999999999874
No 20
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.52 E-value=3.4e-13 Score=107.97 Aligned_cols=111 Identities=14% Similarity=0.277 Sum_probs=94.3
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++.+|+++.+.+.... ...++.+ +|. .+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~------~~~~~~~----~~~-~~~~ 69 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEAG------EPSAVDE----VAT-PPLL 69 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhccccc------ccccHHH----hcc-CCce
Confidence 3678899999999999999999999999998 48999999999998876532210 1233666 465 7889
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCC--CeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQ--KKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~--g~liGiIt~~DIl~ 339 (351)
++.+++++.++++.|.+++...+||+|+ + |+++|+||.+||++
T Consensus 70 ~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 70 TVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLL 114 (115)
T ss_pred EECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhc
Confidence 9999999999999999999999999998 6 79999999999975
No 21
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=2.6e-13 Score=110.12 Aligned_cols=118 Identities=22% Similarity=0.395 Sum_probs=92.2
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCc-hhhhhc--cCcccccccCccCCC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-WFDIIA--SQPISDLGLPFMSSD 292 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~-~l~~l~--~~~v~~L~~~~m~~~ 292 (351)
++.++.+++++.++++.|.+++++++||+|+++++++|+|+..|+++++..+.... ..+... ...+.+ +|. .
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~ 76 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLT----IGT-S 76 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcc----cCc-C
Confidence 47789999999999999998899999999873278999999999988764331100 000000 011112 354 7
Q ss_pred CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 293 ~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++.++++++++.+|++.|.+++.+++||+|+ +|+++|+||.+||..
T Consensus 77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~~ 122 (123)
T cd04627 77 DVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDVRL 122 (123)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhhc
Confidence 8889999999999999999999999999998 799999999999863
No 22
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=2.6e-13 Score=109.91 Aligned_cols=118 Identities=21% Similarity=0.343 Sum_probs=96.3
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhh----hccCcccccccCccC
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI----IASQPISDLGLPFMS 290 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~----l~~~~v~~L~~~~m~ 290 (351)
+++.++.+++++.++.+.|.+.+++++||++++ |+++|+++..++++.+........... ....++.+ +|.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~ 76 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD----IMS 76 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH----hcc
Confidence 458889999999999999999899999999884 899999999999877643221000000 12334666 575
Q ss_pred CCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 291 ~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
..++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..|++.
T Consensus 77 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~ 123 (124)
T cd04600 77 -PPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA 123 (124)
T ss_pred -CCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence 78899999999999999999999999999997 799999999999975
No 23
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=5.2e-13 Score=106.18 Aligned_cols=110 Identities=26% Similarity=0.449 Sum_probs=95.1
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.++++.|.+.+++++||+|++ ++++|+++..|+++.+.+... ...++.+ +|. .+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~-------~~~~v~~----~~~-~~~~ 68 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGID-------LDTPVSE----IMT-RDLV 68 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCC-------CccCHHH----hcc-CCCE
Confidence 46789999999999999998899999999984 899999999999887754321 2345667 475 7888
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++..++++.++++.|.+++...+||+++ +|+++|++|.+|+++
T Consensus 69 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~ 111 (112)
T cd04624 69 TVDPDEPVAEAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR 111 (112)
T ss_pred EECCCCcHHHHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence 9999999999999999999999999998 799999999999874
No 24
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.50 E-value=7e-14 Score=136.08 Aligned_cols=157 Identities=16% Similarity=0.245 Sum_probs=126.1
Q ss_pred cccchhhHHHHHhhhccC--CCChHHHHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCC
Q 018713 12 KLSSCDAYFEAIQSRKKL--PHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAP 89 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~ 89 (351)
+-++|..||..-..++.. .....+...+-|-.+.+.+++. .+.++|++.+|+.+|.+.|.++++.++.|++.++
T Consensus 115 ~n~~f~~ff~~~~akR~~~~~~~~~eq~~~e~~~trv~~~~~---~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~- 190 (610)
T COG2905 115 ENPEFADFFLRSLAKRLRDIADRLAEQGESEFILTRVGEVKT---LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSG- 190 (610)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhc---CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCC-
Confidence 356788999965554332 2223332224445566777776 6889999999999999999999999999998764
Q ss_pred CCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhccc
Q 018713 90 SSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGL 169 (351)
Q Consensus 90 ~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (351)
..+||||..|+...++..
T Consensus 191 -------~~~GIvT~~dl~~~v~~~------------------------------------------------------- 208 (610)
T COG2905 191 -------PLLGIVTRKDLRSRVIAD------------------------------------------------------- 208 (610)
T ss_pred -------CccceeehHHHHHHHHhc-------------------------------------------------------
Confidence 699999999988654432
Q ss_pred ccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCC
Q 018713 170 AAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP 249 (351)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g 249 (351)
......+|+++|+ .|++++++++.+.+|+-.|.+++++++||+++ |
T Consensus 209 ----------------------------g~~~~~~V~evmT----~p~~svd~~~~~feAml~m~r~~I~hl~V~e~--g 254 (610)
T COG2905 209 ----------------------------GRSKTQKVSEVMT----SPVISVDRGDFLFEAMLMMLRNRIKHLPVTED--G 254 (610)
T ss_pred ----------------------------CCCcccchhhhhc----cCceeecCcchHHHHHHHHHHhCCceeeeecC--C
Confidence 3355689999999 78999999999999999999999999999986 5
Q ss_pred CEEEEEeHHHHHHHhhcCC
Q 018713 250 DIKNYITQSAVVQGLEGCK 268 (351)
Q Consensus 250 ~liGiIt~~dil~~l~~~~ 268 (351)
+++|+||.+||++...++.
T Consensus 255 q~~Gilt~~dIl~l~s~~~ 273 (610)
T COG2905 255 QPLGILTLTDILRLFSQNS 273 (610)
T ss_pred eeeEEeeHHHHHHhhCCCc
Confidence 9999999999999987654
No 25
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.50 E-value=1.1e-12 Score=122.77 Aligned_cols=164 Identities=14% Similarity=0.184 Sum_probs=124.9
Q ss_pred hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (351)
Q Consensus 41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~ 120 (351)
|...++.++|. ++.+++++++++|+.++++.+.+++.+++||++++. ++++|+|+..|++.....
T Consensus 64 l~~~~V~diMt-pr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~-------d~iiGiv~~kDll~~~~~------- 128 (292)
T PRK15094 64 IADQRVRDIMI-PRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK-------DHIEGILMAKDLLPFMRS------- 128 (292)
T ss_pred cCCCEEeEEcc-chHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCC-------CcEEEEEEHHHHHhHhhc-------
Confidence 56679999997 556899999999999999999999999999998652 389999999998832100
Q ss_pred hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~ 200 (351)
. .
T Consensus 129 -----------------------------------------------------------------------------~-~ 130 (292)
T PRK15094 129 -----------------------------------------------------------------------------D-A 130 (292)
T ss_pred -----------------------------------------------------------------------------c-C
Confidence 0 0
Q ss_pred CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCc
Q 018713 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (351)
Q Consensus 201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~ 280 (351)
....+.++|. + +.++++++++.++++.|.+++.+.+||+|+. |.++|+||.+|+++.+.... .+..+......
T Consensus 131 ~~~~l~~l~r----~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei-~de~d~~~~~~ 203 (292)
T PRK15094 131 EAFSMDKVLR----Q-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEI-EDEYDEEDDID 203 (292)
T ss_pred CcCCHHHHcC----C-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCC-ccccccccccc
Confidence 1234677776 2 4589999999999999999999999999984 78999999999999986543 12211101112
Q ss_pred ccccccCccCCCCceEEcCCCcHHHHHHHH
Q 018713 281 ISDLGLPFMSSDEVITIQSNELILEAFKRM 310 (351)
Q Consensus 281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m 310 (351)
+..+ ...-+.|+..+++.+..+.+
T Consensus 204 i~~~------~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 204 FRQL------SRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred cEEe------CCCeEEEEeccCHHHHHHHh
Confidence 3331 24567899999999988776
No 26
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=4.1e-13 Score=106.61 Aligned_cols=109 Identities=16% Similarity=0.347 Sum_probs=94.4
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++.+++++.++++.|.+.+...+||+|+ +|+++|+++..++.+.+.+.. ...++.+ +|. .+++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~--------~~~~v~~----~~~-~~~~ 67 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGG--------PDAPVRG----VMR-RDFP 67 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcC--------CCCcHHH----Hhc-CCCc
Confidence 4678999999999999998888999999998 479999999999988775432 2245667 465 7888
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++.+++++.++++.|.+++...+||+++ +|+++|+||..|+.+
T Consensus 68 ~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~ 110 (111)
T cd04639 68 TVSPSATLDAVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGE 110 (111)
T ss_pred EECCCCcHHHHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhc
Confidence 9999999999999999999999999997 799999999999875
No 27
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=7.9e-13 Score=104.74 Aligned_cols=108 Identities=22% Similarity=0.452 Sum_probs=93.9
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v 294 (351)
+++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++..++++.+.... .++.+ +|. .++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~----------~~~~~----~~~-~~~ 65 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDK----------KSVED----IMT-RNV 65 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCc----------cCHHH----hcC-CCC
Confidence 457889999999999999999999999999984 89999999999987664321 23666 465 788
Q ss_pred eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
.++.+++++.++++.|.+++.+.+||+++ +|+++|+||..||++
T Consensus 66 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~ 109 (110)
T cd04605 66 ITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDISK 109 (110)
T ss_pred eEECCCCcHHHHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence 89999999999999999999999999998 899999999999965
No 28
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=6e-13 Score=106.43 Aligned_cols=112 Identities=16% Similarity=0.226 Sum_probs=94.1
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++.+++++.++++.|.+++++.+||+|++.++++|+++..|+++.+..... .....++.+ +|. .+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~-----~~~~~~v~~----~~~-~~~~ 71 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR-----DPDRVNVYE----IMT-KPLI 71 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC-----CCCccCHHH----Hhc-CCCe
Confidence 478899999999999999988999999998721799999999999886643211 012346777 475 7889
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++++++++.++++.|.+++.+.+||+|+ |+++|+|+..|++.
T Consensus 72 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 72 SVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred eECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 9999999999999999999999999987 89999999999875
No 29
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=7.8e-13 Score=104.97 Aligned_cols=111 Identities=23% Similarity=0.422 Sum_probs=94.5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++.+++++.++++.|.+++++++||+|++ ++++|+++..|+++.+...... ....++.+ +|. +++.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~-----~~~~~~~~----~~~-~~~~ 70 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGAS-----ALDTPVSE----IMT-RNVI 70 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCC-----ccccCHHH----hcC-CCcE
Confidence 46789999999999999999999999999984 7999999999999877543210 02346777 575 7889
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++.+++++.++++.|.+.+.+++||+++ |+++|+||.+||++
T Consensus 71 ~v~~~~~~~~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 71 TVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred EECCCCcHHHHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 9999999999999999999999999987 89999999999975
No 30
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=3.6e-13 Score=107.61 Aligned_cols=110 Identities=15% Similarity=0.210 Sum_probs=91.2
Q ss_pred CcEEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCC-CC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DE 293 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~-~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~-~~ 293 (351)
++.++++++++.++++.|.+++ .+.+||+|+ +|+++|+++..|+++...... ...++.+ +|.. .+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~--------~~~~v~~----~~~~~~~ 68 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQW--------AQTTVIQ----VMTPAAK 68 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhhc--------cccchhh----hhccccc
Confidence 4778999999999999997665 889999988 489999999999988764221 2345666 4541 23
Q ss_pred ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++++.+++++.++++.|.+++.+++||+|+ +|+++|+|+..||++
T Consensus 69 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 69 LVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred ceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 678999999999999999999999999997 789999999999875
No 31
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=6.8e-13 Score=105.64 Aligned_cols=110 Identities=23% Similarity=0.297 Sum_probs=94.0
Q ss_pred cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceE
Q 018713 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (351)
Q Consensus 217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~ 296 (351)
+.++.+++++.++++.|.+.+.+.+||+|++ ++++|+++..|+++...+... +...++.+ +|. .++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~------~~~~~i~~----~~~-~~~~~ 70 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEE------LKDAKVRE----VMN-SPVIT 70 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhh------hcCCcHHH----hcc-CCceE
Confidence 6788999999999999999999999999984 799999999999876533211 13446777 575 78899
Q ss_pred EcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 297 V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+..++++.++++.|.+++.+.+||+|+ +|+++|+|+..|+++
T Consensus 71 v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 71 IDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR 112 (113)
T ss_pred ECCCCcHHHHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence 999999999999999999999999998 889999999999864
No 32
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=5.4e-13 Score=108.85 Aligned_cols=117 Identities=16% Similarity=0.271 Sum_probs=92.1
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhh-----hc--cCcccccccCc
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI-----IA--SQPISDLGLPF 288 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~-----l~--~~~v~~L~~~~ 288 (351)
.+.++++++++.++++.|.++++..+||+|++ |+++|+++..|+++............. +. -....+ .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 76 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDG----V 76 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccc----c
Confidence 37789999999999999999999999999984 899999999999887643221000000 00 011112 2
Q ss_pred cCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 289 m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+. .++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||..||++
T Consensus 77 ~~-~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~ 125 (126)
T cd04642 77 KS-RPLITCTPSSTLKEVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS 125 (126)
T ss_pred cc-CCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence 43 77889999999999999999999999999998 799999999999975
No 33
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=7.1e-13 Score=105.30 Aligned_cols=109 Identities=22% Similarity=0.342 Sum_probs=93.2
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.++++.|.+++++.+||+|++ |+++|+++..|++.+...... ...++.+ +|. .++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~-------~~~~v~~----~~~-~~~~ 68 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESF-------LEKKVFN----IVS-QDVF 68 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhccc-------ccCcHHH----Hhc-CCcE
Confidence 47789999999999999999999999999884 899999999999876533210 2346777 475 7888
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++.+++++.++++.|.+++...+||+++ |+++|+||..||+.
T Consensus 69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 69 YVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred EEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 9999999999999999999999999987 89999999999874
No 34
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.48 E-value=2.3e-13 Score=111.16 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=94.9
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v 294 (351)
+++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++.+.+.... ...++.+ +|. +++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~------~~~~v~~----im~-~~~ 69 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQ------PSDPVSK----ALY-KQF 69 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccC------CCCcHHH----Hhh-ccc
Confidence 357889999999999999999999999999984 7999999999998766543210 3567888 586 889
Q ss_pred eEEcCCCcHHHHHHHHH---------hcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713 295 ITIQSNELILEAFKRMK---------DNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341 (351)
Q Consensus 295 ~~V~~~~~l~~al~~m~---------~~~~~~lpVvd~~~g~liGiIt~~DIl~~l 341 (351)
.++.+++++.++.++|. +.+...+||+++ +|+++|+||..||++++
T Consensus 70 ~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 70 KRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVTKIDLLSYI 124 (124)
T ss_pred eecCCCCCHHHHHhhcccCCceEEEecccccccccccc-ccceEEEEehhHhhhhC
Confidence 99999999999999653 335677888887 89999999999999764
No 35
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.48 E-value=1.1e-12 Score=128.38 Aligned_cols=164 Identities=12% Similarity=0.160 Sum_probs=127.7
Q ss_pred HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (351)
Q Consensus 40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~ 119 (351)
.|++++++++|. |+.++++++.++++.++++.|.+++++++||++++ .++++|+|+..|++.+.-
T Consensus 187 ~l~~~~v~diMt-pr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~-------~d~ivGiv~~kDll~~~~------- 251 (408)
T TIGR03520 187 SFGNTDTKQVMR-PRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET-------IDNITGVLYIKDLLPHLN------- 251 (408)
T ss_pred ccCCCEeeeeCC-chHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC-------CCceEEEEEHHHHHhHhc-------
Confidence 356899999997 66789999999999999999999999999999865 248999999999883210
Q ss_pred hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 199 (351)
.
T Consensus 252 ------------------------------------------------------------------------------~- 252 (408)
T TIGR03520 252 ------------------------------------------------------------------------------K- 252 (408)
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
...++.++|+ ++.++++++++.++++.|.+++.+.++|+|+. |...|+||.+|+++.+.... .+..+. ...
T Consensus 253 -~~~~l~~~~~-----~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei-~de~d~-~~~ 323 (408)
T TIGR03520 253 -KNFDWQSLLR-----EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDI-SDEFDD-EDL 323 (408)
T ss_pred -CCCCHHHHcC-----CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCC-CCcCCc-Ccc
Confidence 1124566765 47899999999999999999999999999985 88999999999999986432 122111 112
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHh
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKD 312 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~ 312 (351)
.+..+ . +..+.++..+++.++.+.|.-
T Consensus 324 ~i~~~-----~-~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 324 IYSKI-----D-DNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred ceEEe-----C-CCeEEEEeccCHHHHHHHhCC
Confidence 23331 1 556788999999999988743
No 36
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=1.1e-12 Score=105.10 Aligned_cols=112 Identities=17% Similarity=0.281 Sum_probs=93.7
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
.+.++++++++.+|++.|.+++...+||+|+++ +++|+++..|+...+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g--------~~~G~vt~~dl~~~~~~~--------------------- 52 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHG--------KLAGVLTKTDVVRQMGRC--------------------- 52 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCC--------CEEEEEehHHHHHHHhhc---------------------
Confidence 467899999999999999999999999998754 899999999987432110
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
.......++.++|. .
T Consensus 53 -------------------------------------------------------------~~~~~~~~v~~~~~----~ 67 (114)
T cd04619 53 -------------------------------------------------------------GGPGCTAPVENVMT----R 67 (114)
T ss_pred -------------------------------------------------------------CCCcccCCHHHHhc----C
Confidence 01123467889998 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++..++||+|++ |+++|+|+++|+++
T Consensus 68 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 68 AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 58999999999999999999999999999974 79999999999864
No 37
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.48 E-value=3.4e-13 Score=131.36 Aligned_cols=128 Identities=19% Similarity=0.332 Sum_probs=113.7
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc-CCCCchhhhhcc
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG-CKGRDWFDIIAS 278 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~-~~~~~~l~~l~~ 278 (351)
+..+.|.++++ .|++++++.+++.+|...|.+.|++.+.++++ ++...||||.+|+...... +.. ..
T Consensus 146 ~~~trv~~~~~----~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g~~-------~~ 213 (610)
T COG2905 146 FILTRVGEVKT----LPAVTVSPQASIQDAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADGRS-------KT 213 (610)
T ss_pred HHHHHHHHHhc----CCCcccCccCcHHHHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcCCC-------cc
Confidence 44467899999 67999999999999999999999999999988 4899999999999887643 322 46
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCccc
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 346 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~~ 346 (351)
.++++ +|+ .++++|+..+.+.+|+-+|.+++++++||+++ |+++|+||.+||+..+..+.+
T Consensus 214 ~~V~e----vmT-~p~~svd~~~~~feAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s~~~~ 274 (610)
T COG2905 214 QKVSE----VMT-SPVISVDRGDFLFEAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFSQNSI 274 (610)
T ss_pred cchhh----hhc-cCceeecCcchHHHHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhCCCce
Confidence 78999 697 99999999999999999999999999999987 999999999999999987654
No 38
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.48 E-value=2.5e-12 Score=127.54 Aligned_cols=170 Identities=14% Similarity=0.177 Sum_probs=128.5
Q ss_pred HHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhH
Q 018713 37 LTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAE 116 (351)
Q Consensus 37 ~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~ 116 (351)
....+...++.++|. ++++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..|+...
T Consensus 82 q~~~l~~VKv~~iMi---~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~g--------klvGIVT~rDL~~~------ 144 (479)
T PRK07807 82 VAEVVAWVKSRDLVF---DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEG--------RPVGVVTEADCAGV------ 144 (479)
T ss_pred HHHHHhhcccccccc---cCCeEECCCCCHHHHHHHHHhcCCceEEEECCCC--------eEEEEEeHHHHhcC------
Confidence 356678889988886 7889999999999999999999999999998653 89999998887410
Q ss_pred HHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhh
Q 018713 117 LAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQ 196 (351)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 196 (351)
T Consensus 145 -------------------------------------------------------------------------------- 144 (479)
T PRK07807 145 -------------------------------------------------------------------------------- 144 (479)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhh
Q 018713 197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII 276 (351)
Q Consensus 197 ~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l 276 (351)
....++.++|+ .++.++++++++.++++.|.+++++.+||+|++ ++++|+||++||++......... .+
T Consensus 145 ---~~~~~V~diMt----~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~~~~~--~~- 213 (479)
T PRK07807 145 ---DRFTQVRDVMS----TDLVTLPAGTDPREAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYTPAVD--AA- 213 (479)
T ss_pred ---ccCCCHHHhcc----CCceEECCCCcHHHHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCCchhh--hh-
Confidence 11246899999 569999999999999999999999999999984 79999999999999875432110 00
Q ss_pred ccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCe
Q 018713 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK 327 (351)
Q Consensus 277 ~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~ 327 (351)
....+.. ...+ .....+.+..|.+.+++. .++|-..|.
T Consensus 214 g~l~V~a----------av~~--~~~~~~~a~~Lv~aGvd~-i~~D~a~~~ 251 (479)
T PRK07807 214 GRLRVAA----------AVGI--NGDVAAKARALLEAGVDV-LVVDTAHGH 251 (479)
T ss_pred hccchHh----------hhcc--ChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence 0111122 1222 234667777888888885 466754454
No 39
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=4.7e-13 Score=104.85 Aligned_cols=96 Identities=21% Similarity=0.414 Sum_probs=83.1
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++|+.+|++.|.++++.++||+|++++ +++|+++..|+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~-------~~~Givt~~Dl~~~------------------------- 49 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQ-------QFVGMLTITDFILI------------------------- 49 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCC-------EEEEEEEHHHHhhh-------------------------
Confidence 5789999999999999999999999999987422 79999999887721
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
+.
T Consensus 50 -------------------------------------------------------------------------~~----- 51 (98)
T cd04618 50 -------------------------------------------------------------------------LR----- 51 (98)
T ss_pred -------------------------------------------------------------------------ee-----
Confidence 00
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
+.++.+++++.+|++.|.+++++++||+|+++|+++|+||.+|+++
T Consensus 52 -~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 -LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred -eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 4579999999999999999999999999873379999999999874
No 40
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=7e-13 Score=105.01 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=92.1
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.++++.|.+++.+.+||+|+ +|+++|+++..+++... ...++.+ +|. .++.
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~------------~~~~v~~----~~~-~~~~ 64 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKD------------PDTTIEK----VMT-KNPI 64 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhccc------------ccccHHH----Hhc-CCCe
Confidence 5788999999999999999988999999998 48999999999996432 1335667 465 7788
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++++++++.++++.|.+++.+.+||+++ +|+++|+||..|+++
T Consensus 65 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~ 107 (108)
T cd04596 65 TVNPKTSVASVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK 107 (108)
T ss_pred EECCCCCHHHHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence 9999999999999999999999999997 899999999999975
No 41
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.47 E-value=9.9e-13 Score=104.65 Aligned_cols=112 Identities=26% Similarity=0.400 Sum_probs=95.5
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v 294 (351)
.++.++++++++.++++.|.+.+.+.+||+|++ |+++|+++..++.+.+..... ....++.+ +|. .++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~------~~~~~v~~----~~~-~~~ 69 (114)
T cd04604 2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLD------ILTLPVAD----VMT-RNP 69 (114)
T ss_pred CcccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCc------cccCCHHH----hhc-cCC
Confidence 356788999999999999988888999999984 899999999999988754321 12346777 575 778
Q ss_pred eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
.++.+++++.++++.|.+++.+.+||+++ +|+++|+|+..||++
T Consensus 70 ~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~ 113 (114)
T cd04604 70 KTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR 113 (114)
T ss_pred eEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence 89999999999999999999999999997 799999999999975
No 42
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=8.9e-13 Score=106.45 Aligned_cols=117 Identities=22% Similarity=0.427 Sum_probs=95.7
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch---hhhhccCcccccccCccCCC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW---FDIIASQPISDLGLPFMSSD 292 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~---l~~l~~~~v~~L~~~~m~~~ 292 (351)
++.++.+++++.++++.|.+.+++.+||++++ |+++|+++..++++.+........ .......++.+ +|. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~-~ 75 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE----VMK-T 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----hhC-C
Confidence 47789999999999999999999999999984 899999999999887653221100 00112345666 465 7
Q ss_pred CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 293 ~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+++++.+++++.+++++|.+.+.+.+||+++ +|+++|+||..|+++
T Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~ 121 (122)
T cd04803 76 DVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLR 121 (122)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhc
Confidence 8889999999999999999999999999998 789999999999975
No 43
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=1.2e-12 Score=105.53 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=93.6
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.++++..+||+|+++ +++|+|+..|++......
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~--------~~~Givt~~dl~~~~~~~--------------------- 52 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDG--------DLVGVVSRKDLLKASIGG--------------------- 52 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC--------CEEEEEEHHHHHHHHHcC---------------------
Confidence 578999999999999999999999999998753 799999999988432110
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
......++.++|... .
T Consensus 53 --------------------------------------------------------------~~~~~~~~~~~~~~~--~ 68 (118)
T cd04617 53 --------------------------------------------------------------ADLQKVPVGVIMTRM--P 68 (118)
T ss_pred --------------------------------------------------------------CCccCCCHHHHhCCC--C
Confidence 112345678888732 2
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCC--CCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT--PDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~--g~liGiIt~~dil~ 262 (351)
++.++++++++.++++.|.+++++.+||+|+++ ++++|+||++|+++
T Consensus 69 ~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 69 NITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 588999999999999999999999999998742 68999999999864
No 44
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1e-12 Score=105.04 Aligned_cols=114 Identities=20% Similarity=0.331 Sum_probs=93.0
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.++++.|.+++++.+||+|+ +++++|+++..|+++++.+..... ...+...++.+ +|. .++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~-~~~~~~~~v~~----~~~-~~~~ 74 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLENLD-LERLVDLKVID----VMN-TDVP 74 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCchh-HHHHhCCcHHH----Hhc-CCCc
Confidence 3778999999999999999999999999997 479999999999998875432111 10112456777 475 7788
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++.+++++.++++.|.+++ .+||+|+ +|+++|+||..|+++
T Consensus 75 ~v~~~~~l~~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~ 115 (116)
T cd04643 75 VIIDDADIEEILHLLIDQP--FLPVVDD-DGIFIGIITRREILK 115 (116)
T ss_pred eecCCCCHHHHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhc
Confidence 9999999999999998765 5899998 899999999999975
No 45
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=7.9e-13 Score=107.23 Aligned_cols=118 Identities=25% Similarity=0.459 Sum_probs=95.8
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchh-----hhhccCcccccccCccC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF-----DIIASQPISDLGLPFMS 290 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l-----~~l~~~~v~~L~~~~m~ 290 (351)
++.++++++++.++++.|.+++.+.+||+|+++|+++|+|+..|+++++.+....... ......++.+ +|.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 77 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS----IMT 77 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH----Hhc
Confidence 4778999999999999999999999999987337999999999999877543211000 0112345666 465
Q ss_pred CCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 291 ~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++++++++++++.++++.|.+.+.+.+||+++ +|+++|+||..||++
T Consensus 78 -~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~ 124 (125)
T cd04631 78 -RNVITITPDDSIKDAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLK 124 (125)
T ss_pred -CCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhc
Confidence 78999999999999999999999999999997 799999999999986
No 46
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.46 E-value=1.7e-12 Score=102.15 Aligned_cols=104 Identities=18% Similarity=0.302 Sum_probs=89.9
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.++++.|.+++.+.+||+|+ +|+++|+++..|+++... .++.+ +|. +...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~-------------~~~~~----~~~-~~~~ 62 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG-------------GCCGD----HAE-PFKV 62 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc-------------cchhh----hcc-cCCE
Confidence 3678999999999999999888999999987 489999999999976431 13455 464 6677
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
.+.+++++.++++.|.+++...+||+|+ +|+++|+|+.+|+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 63 TVSVDDDLRIVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIAD 105 (106)
T ss_pred EECCCCCHHHHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 8999999999999999999999999998 789999999999875
No 47
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.46 E-value=2e-12 Score=102.03 Aligned_cols=106 Identities=13% Similarity=0.312 Sum_probs=92.2
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.++++.|.+++..++||+|++ ++++|+++..|++..... ..++.+ +|. ..+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~-----------~~~v~~----~~~-~~~~ 65 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE-----------AKSLED----IML-EDVF 65 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc-----------CCcHhH----hhc-CCce
Confidence 47789999999999999998899999999984 899999999999876521 234566 465 7888
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++++++++.++++.|.+++.+++||+++ +|+++|+||.+|+++
T Consensus 66 ~v~~~~~~~~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~ 108 (109)
T cd04583 66 TVQPDASLRDVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD 108 (109)
T ss_pred EECCCCcHHHHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence 9999999999999999999999999998 899999999999874
No 48
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=9.9e-13 Score=104.89 Aligned_cols=109 Identities=14% Similarity=0.247 Sum_probs=91.3
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.+++...+||+|+++ +++|+++..|+.... .
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~dl~~~~--~--------------------- 50 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEEN--------KVLGQVTLSDLLEIG--P--------------------- 50 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC--------CEEEEEEHHHHHhhc--c---------------------
Confidence 357899999999999999999999999998753 899999999987310 0
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
......++.++|. .
T Consensus 51 --------------------------------------------------------------~~~~~~~v~~~~~----~ 64 (111)
T cd04603 51 --------------------------------------------------------------NDYETLKVCEVYI----V 64 (111)
T ss_pred --------------------------------------------------------------ccccccChhheee----c
Confidence 0112346888887 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++.+++||+|++ |+++|+||.+|+++
T Consensus 65 ~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 65 PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 58899999999999999999999999999984 79999999999975
No 49
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=1.2e-12 Score=102.02 Aligned_cols=94 Identities=19% Similarity=0.384 Sum_probs=84.4
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++.+++++.++++.|.+++++.+||+|+ +|+++|+++..|+++.. .+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~----------------------------~~~ 52 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAKS----------------------------EVV 52 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcCC----------------------------CcE
Confidence 4778999999999999999899999999997 48999999999996421 256
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++.+++++.++++.|.+++.+++||+++ +|+++|+||.+||++
T Consensus 53 ~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~ 95 (96)
T cd04614 53 TATKRTTVSECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLK 95 (96)
T ss_pred EecCCCCHHHHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 8999999999999999999999999998 799999999999975
No 50
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=1.9e-12 Score=103.55 Aligned_cols=110 Identities=24% Similarity=0.387 Sum_probs=90.1
Q ss_pred CcEEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713 216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~-~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v 294 (351)
++.++++++++.++++.|.+++ ...++|+|+ |+++|+++..|+++.+..... ....++.+ +|. .++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~------~~~~~i~~----~~~-~~~ 68 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKD------LSDLPIGE----VMT-QPV 68 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCC------ccccCHHH----hcC-CCc
Confidence 3678899999999999998877 566777764 699999999999887643211 02346777 475 778
Q ss_pred eEEcCC--CcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 295 ITIQSN--ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 295 ~~V~~~--~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+++.++ +++.++++.|.+++.+.+||+|+ +|+++|+||.+|+++
T Consensus 69 ~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~ 114 (115)
T cd04620 69 VTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ 114 (115)
T ss_pred EEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence 888887 78999999999999999999998 899999999999975
No 51
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.1e-12 Score=106.02 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=89.9
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.++++.++||+|+++ +++|+++..|++....+.....
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~--------~~~Giv~~~dl~~~~~~~~~~~----------------- 56 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENG--------KVVDVYSRFDVINLAKEGAYNN----------------- 56 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCC--------eEEEEEeHHHHHHHHhcCcccc-----------------
Confidence 678999999999999999999999999998643 8999999999995432110000
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
...++.+. ....++|. .
T Consensus 57 --------------------------------------------------~~~~~~~~---------~~~~~~~~----~ 73 (120)
T cd04641 57 --------------------------------------------------LDLTVGEA---------LERRSQDF----E 73 (120)
T ss_pred --------------------------------------------------ccCCHHHH---------HhhcccCC----C
Confidence 00000000 01122343 4
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~ 263 (351)
++.++.+++++.++++.|.+++.+.+||+|++ |+++|+||++|++++
T Consensus 74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~~ 120 (120)
T cd04641 74 GVRTCSPDDCLRTIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQF 120 (120)
T ss_pred CCeEEcCCCcHHHHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhcC
Confidence 57899999999999999999999999999984 799999999999753
No 52
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=9.8e-13 Score=104.80 Aligned_cols=112 Identities=20% Similarity=0.329 Sum_probs=93.7
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+++..++++.+...... .....++.+ +|. .+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~----~~~~~~v~~----~~~-~~~~ 71 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYH----CDGVATVRD----IMT-TEVL 71 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhc----cCCCccHHH----Hhc-cCce
Confidence 46789999999999999988888999999984 7999999999998876432100 012345667 575 6788
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++.+++++.++++.|.+++.+.+||+|+ |+++|+||..||++
T Consensus 72 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 72 TVSPDDSIVDLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred EECCCCcHHHHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 9999999999999999999999999997 89999999999975
No 53
>PRK11573 hypothetical protein; Provisional
Probab=99.44 E-value=2.1e-12 Score=126.50 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=110.6
Q ss_pred CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278 (351)
Q Consensus 199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~ 278 (351)
.+...+|+++|+|. ..+..++.++++.++++.+.+++++++||++++.++++|+++.+|++..+.++... ..
T Consensus 183 ~l~~~~v~eiMtPr--~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~------~~ 254 (413)
T PRK11573 183 DLEKVTVDDIMVPR--NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEF------TK 254 (413)
T ss_pred ccCCCChhhcCCcc--ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcC------CH
Confidence 47889999999976 89999999999999999999999999999977556899999999998765432110 11
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
..+.+ ++ +++.+|++++++.++++.|++++.+-..|+|+ .|...|+||.+||++.+.+.
T Consensus 255 ~~l~~----~~--r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeivGe 313 (413)
T PRK11573 255 ENMLR----AA--DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVGD 313 (413)
T ss_pred HHHHh----hc--cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHhCC
Confidence 22334 23 68889999999999999999999998889999 99999999999999987643
No 54
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.44 E-value=1.1e-12 Score=134.16 Aligned_cols=128 Identities=12% Similarity=0.225 Sum_probs=107.8
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
....+++|+|+ +++.++++++++.++.+.|.+++.+.+||+|++ ++++|+|+.+|+.+.+..... ....
T Consensus 444 L~~~~V~dim~----~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~------~~~~ 512 (574)
T PRK01862 444 LRTTQMRELIQ----PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRD------TTDK 512 (574)
T ss_pred HhhCcHHHHhc----CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccc------cccc
Confidence 44578999999 458899999999999999999999999999984 899999999999886533211 0234
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCC-CeEEEEEeHHHHHHHhcC
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~-g~liGiIt~~DIl~~l~~ 343 (351)
++.+ +|. ++++++++++++.++++.|.+++.+.+||+|+++ ++++|+||.+|+++.+.+
T Consensus 513 ~v~d----im~-~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 513 TAAD----YAH-TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred hHHH----hcc-CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 6777 576 7888999999999999999999999999999722 589999999999998754
No 55
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.7e-12 Score=106.75 Aligned_cols=116 Identities=22% Similarity=0.420 Sum_probs=94.7
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch--------------hhhhccCcc
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--------------FDIIASQPI 281 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~--------------l~~l~~~~v 281 (351)
++.++++++++.++++.|.+.+.+++||+|++ ++++|+++..++++++........ ..++...++
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 47789999999999999998899999999984 899999999999987754321100 011122356
Q ss_pred cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
.+ +|. ++++.+.+++++.+++++|.+.+.+.+||+|+ |+++|+||..|+++
T Consensus 81 ~~----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 81 EE----IMT-KKVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred HH----hcc-CCceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 66 465 77889999999999999999999999999997 99999999999985
No 56
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.44 E-value=2.4e-12 Score=102.15 Aligned_cols=109 Identities=14% Similarity=0.248 Sum_probs=92.2
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.++++.|.+.+...+||+++++|+++|+++..++++...+... ..++.+ ++ .++.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~--------~~~~~~----~~--~~~~ 67 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE--------DLDLRD----LL--RPPL 67 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC--------cCCHHH----Hh--cCCe
Confidence 377899999999999999988899999998722799999999999987754221 134555 24 4678
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++.+++++.++++.|.+++.+++||+++ +|+++|+||..|+++
T Consensus 68 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 110 (111)
T cd04590 68 FVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE 110 (111)
T ss_pred ecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence 9999999999999999999999999998 899999999999874
No 57
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=2.3e-12 Score=106.88 Aligned_cols=116 Identities=25% Similarity=0.336 Sum_probs=94.8
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch-----------------hhhhcc
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-----------------FDIIAS 278 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~-----------------l~~l~~ 278 (351)
++.++++++++.++++.|.+++...+||+|+ +++++|+++..|+++.+........ ......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence 3678999999999999999999999999998 4899999999999987743211100 000123
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
.++.+ +|. .++..+.+++++.++++.|.+++.+.+||+++ |+++|+||.+||++
T Consensus 81 ~~v~~----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAED----IMT-EEIITVSPNDDVVDAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccHHH----hcC-CCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 46777 575 78889999999999999999999999999986 89999999999875
No 58
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.44 E-value=2.3e-12 Score=102.38 Aligned_cols=112 Identities=16% Similarity=0.285 Sum_probs=94.4
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.++++.|.+.++..+||+|++ ++++|+++..|+.+.+.+... ....++.+ +|. .++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~------~~~~~v~~----~~~-~~~~ 69 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSL------YDLVVASD----IMT-KPPV 69 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccc------cccEEHHH----hcc-CCCc
Confidence 47789999999999999998899999999984 799999999999887644321 01246777 475 7889
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++.+++++.++++.|.+.+.+.+||+++..|+++|+++..|++.
T Consensus 70 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 70 VVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred EEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999999999999999732488999999999875
No 59
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.43 E-value=2.9e-12 Score=101.63 Aligned_cols=109 Identities=20% Similarity=0.362 Sum_probs=92.5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.++.+.|.+++.+++||+|+ ++++|+++..++++.+...... ...++.+ +|. .+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~------~~~~i~~----~~~-~~~~ 68 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLD------PDTPVSE----VMT-APPI 68 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCC------ccCCHHH----HhC-CCCe
Confidence 4778999999999999999888999999986 5999999999998765432110 2345667 465 7888
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++++++++.++++.|.+++.+++||+++ |+++|+||.+||++
T Consensus 69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 69 TIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred EECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 9999999999999999999999999987 89999999999975
No 60
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.5e-12 Score=105.05 Aligned_cols=118 Identities=22% Similarity=0.363 Sum_probs=93.8
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch-------hhhhccCcccccccCc
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-------FDIIASQPISDLGLPF 288 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~-------l~~l~~~~v~~L~~~~ 288 (351)
++.++++++++.++++.|.+.+.+.+||+|++ ++++|++|..|+.+.+........ .......++.+ +
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 76 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD----A 76 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH----H
Confidence 36789999999999999999999999999984 899999999999876532110000 01112345667 5
Q ss_pred cCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeC-CCCeEEEEEeHHHHHH
Q 018713 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIRH 339 (351)
Q Consensus 289 m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~-~~g~liGiIt~~DIl~ 339 (351)
|. .+++++.+++++.++++.|.+++...+||++. ++|+++|+||.+||++
T Consensus 77 ~~-~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 77 MS-SPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred hc-CCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 75 78899999999999999999999999999842 2689999999999875
No 61
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.43 E-value=3.3e-12 Score=101.08 Aligned_cols=109 Identities=17% Similarity=0.331 Sum_probs=93.6
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++..|++++..+... ...++.+ +|. .+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~-------~~~~v~~----~~~-~~~~ 67 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPD-------LQTPVGE----VMS-SPLL 67 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCC-------CCcCHHH----hcC-CCce
Confidence 3678999999999999999888999999986 589999999999887754321 2345667 465 7888
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++++++++.++++.|.+.+.+.+||+|+ +|+++|+|+.+||++
T Consensus 68 ~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~ 110 (111)
T cd04611 68 TVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ 110 (111)
T ss_pred EECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence 9999999999999999999999999998 899999999999875
No 62
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.43 E-value=8.4e-13 Score=130.97 Aligned_cols=173 Identities=14% Similarity=0.200 Sum_probs=136.0
Q ss_pred hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHH-----cCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSE-----CNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (351)
Q Consensus 41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~-----~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~ 115 (351)
+...++.++|. .+++++++++|+.+|++.|.+ +++..+||+|+++ +++|+|+..|++.
T Consensus 128 ~~e~tvg~iMt---~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~--------~l~GvV~l~dLl~------ 190 (449)
T TIGR00400 128 YSDDSAGRIMT---IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESK--------HLKGVLSIRDLIL------ 190 (449)
T ss_pred CCcchHHHhCc---CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCC--------eEEEEEEHHHHhc------
Confidence 34567888886 689999999999999999976 5678899998653 8999999888761
Q ss_pred HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhh
Q 018713 116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL 195 (351)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ 195 (351)
T Consensus 191 -------------------------------------------------------------------------------- 190 (449)
T TIGR00400 191 -------------------------------------------------------------------------------- 190 (449)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhh
Q 018713 196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI 275 (351)
Q Consensus 196 ~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~ 275 (351)
.....+++++|+ +++.++++++++.++++.|.++++..+||+|++ |+++|+||.+|+++.+.+..
T Consensus 191 ---a~~~~~v~~im~----~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~~------- 255 (449)
T TIGR00400 191 ---AKPEEILSSIMR----SSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSEA------- 255 (449)
T ss_pred ---CCCCCcHHHHhC----CCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhhh-------
Confidence 012356899998 458899999999999999999999999999984 89999999999999885432
Q ss_pred hccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341 (351)
Q Consensus 276 l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l 341 (351)
.++ +|. ...++..+++.+.+++..|.+++..+++|. .+.|+++ ..++..+
T Consensus 256 -----~ed----~~~-~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~-----~~~~~~t-~~ii~~f 305 (449)
T TIGR00400 256 -----TED----FYM-IAAVKPLDDSYFDTSILVMAKNRIIWLLVL-----LVSSTFT-ATIISNY 305 (449)
T ss_pred -----HHH----HHH-hcCCCCCcchhhhchHHHHHHhccchHHHH-----HHHHHHH-HHHHHHH
Confidence 133 243 333344456788999999999999988875 2567777 6666554
No 63
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.43 E-value=1.3e-12 Score=106.73 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=93.1
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
.+++++++++|+.+|++.|.++++..+||+|+++ +++|+++..|++..+.+.
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~--------~~~Gii~~~dl~~~~~~~-------------------- 53 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESG--------KILGMVTLGNLLSSLSSG-------------------- 53 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC--------CEEEEEEHHHHHHHHHHh--------------------
Confidence 3678999999999999999999999999998753 799999999988433211
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
......++.++|.
T Consensus 54 ---------------------------------------------------------------~~~~~~~v~~im~---- 66 (124)
T cd04608 54 ---------------------------------------------------------------KVQPSDPVSKALY---- 66 (124)
T ss_pred ---------------------------------------------------------------ccCCCCcHHHHhh----
Confidence 1133468999999
Q ss_pred CCcEEecCCCCHHHHHHHHH---------hCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713 215 APFLPVATDDSMLSVLLLLS---------KYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~---------~~~~~~vpVvd~~~g~liGiIt~~dil~~l 264 (351)
+++.++.+++++.++.+++. ..+.+++||+++ +|+++|+||.+|+++++
T Consensus 67 ~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 67 KQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVTKIDLLSYI 124 (124)
T ss_pred ccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc-ccceEEEEehhHhhhhC
Confidence 56999999999999999653 335778888887 48999999999998763
No 64
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.42 E-value=1.5e-12 Score=129.24 Aligned_cols=122 Identities=17% Similarity=0.229 Sum_probs=105.8
Q ss_pred CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCc
Q 018713 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (351)
Q Consensus 201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~ 280 (351)
...++.++|. .++.++++++++.++++.|.+++++.+||+|+ +++++|+||.+|+... . ...+
T Consensus 87 ~~VKv~~iMi----~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~~~-----~-------~~~~ 149 (479)
T PRK07807 87 AWVKSRDLVF----DTPVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCAGV-----D-------RFTQ 149 (479)
T ss_pred hhcccccccc----cCCeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHhcC-----c-------cCCC
Confidence 3456678898 56999999999999999999999999999997 4899999999998422 0 1245
Q ss_pred ccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345 (351)
Q Consensus 281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~ 345 (351)
+.+ +|+ .+++++++++++.+|++.|.+++.+.+||+|+ +|+++|+||.+||++....+.
T Consensus 150 V~d----iMt-~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~~~~~ 208 (479)
T PRK07807 150 VRD----VMS-TDLVTLPAGTDPREAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRATIYTP 208 (479)
T ss_pred HHH----hcc-CCceEECCCCcHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhCCc
Confidence 778 586 89999999999999999999999999999998 899999999999999876653
No 65
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.42 E-value=4.5e-12 Score=100.67 Aligned_cols=110 Identities=17% Similarity=0.247 Sum_probs=92.9
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
+++++++++++.++++.|.+.+...++|+|+ ++++|+++..|+++.+.+... ....++.+ +|. .++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~------~~~~~i~~----~~~-~~~~ 68 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGL------PSSTPVGE----IAT-FPLI 68 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCC------CCCCCHHH----HhC-CCcE
Confidence 3678899999999999999888999999986 489999999999887643221 02445777 475 7889
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 340 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~ 340 (351)
.+++++++.++++.|.+++...+||+++ |+++|+||..|++++
T Consensus 69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~~ 111 (111)
T cd04589 69 TVDPDDFLFNALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLSF 111 (111)
T ss_pred EECCCCcHHHHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhcC
Confidence 9999999999999999999999999986 899999999999763
No 66
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=1.7e-12 Score=107.16 Aligned_cols=117 Identities=21% Similarity=0.409 Sum_probs=94.5
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCC---chhh-------------hhcc
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR---DWFD-------------IIAS 278 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~---~~l~-------------~l~~ 278 (351)
.++.++.+++++.++++.|.+++.+++||+|+ +++++|+++..|+++........ .+.. ....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 45788999999999999999999999999998 48999999999998765332100 0000 1123
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
.++.+ +|. .+++.+.+++++.++++.|.+++.+.+||+|. |+++|+||..|+++
T Consensus 81 ~~v~~----~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~--g~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVAD----VMT-RPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG--GRLVGIVSRADLLR 134 (135)
T ss_pred CCHHH----HhC-CCceEeCCCCcHHHHHHHHHHcCCCccCEecC--CEEEEEEEhHhhhc
Confidence 45666 475 78899999999999999999999999999984 89999999999875
No 67
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.42 E-value=4.6e-12 Score=100.34 Aligned_cols=108 Identities=19% Similarity=0.414 Sum_probs=93.1
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.++++.|.+.+++.+||+++ ++++|+++..|+++....+. ...++.+ +|. .++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~--------~~~~v~~----~~~-~~~~ 66 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGL--------ELAKVKD----VMT-KDVI 66 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccc--------cccCHHH----Hhc-CCce
Confidence 4778999999999999999999999999986 58999999999998764322 1245666 465 7889
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++++++++.++++.|.+.+.+.+||+++ +|+++|+|+..|+++
T Consensus 67 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 109 (110)
T cd04588 67 TIDEDEQLYDAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR 109 (110)
T ss_pred EECCCCCHHHHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence 9999999999999999999999999987 799999999999874
No 68
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.42 E-value=3.7e-12 Score=100.80 Aligned_cols=109 Identities=26% Similarity=0.409 Sum_probs=92.4
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++.+++++.++++.|.+.+...+||+|+ ++++|+++..|+.+....... ...++.+ +|. ++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~-------~~~~~~~----~~~-~~~~ 67 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGRE-------ATVLVGD----VMT-RDPV 67 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcc-------cccCHHH----hcc-CCCe
Confidence 4778999999999999999888999999987 589999999999876643211 1123455 465 7889
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++.+++++.++++.|.+++.+++||+++ +|+++|+||..||++
T Consensus 68 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 110 (111)
T cd04612 68 TASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR 110 (111)
T ss_pred EECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence 9999999999999999999999999997 899999999999975
No 69
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=5.4e-12 Score=100.03 Aligned_cols=108 Identities=26% Similarity=0.462 Sum_probs=92.8
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v 294 (351)
+++.+++.++++.++.+.|.+.+..++||+|+ ++++|+++..|+.+.+.... ...++.+ +|. +++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~--------~~~~~~~----~~~-~~~ 66 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL--------GHAPVKD----YMS-TDV 66 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc--------ccCcHHH----Hhc-CCC
Confidence 45788999999999999999888999999987 58999999999987663211 2346777 575 788
Q ss_pred eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+++.+++++.+++.+|.+++.+++||+++ |+++|+||..|+++
T Consensus 67 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvvt~~di~~ 109 (110)
T cd04595 67 VTVPPDTPLSEVQELMVEHDIGRVPVVED--GRLVGIVTRTDLLR 109 (110)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeeEEEeC--CEEEEEEEhHHhhc
Confidence 89999999999999999999999999985 89999999999874
No 70
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.41 E-value=2.8e-12 Score=127.24 Aligned_cols=123 Identities=14% Similarity=0.275 Sum_probs=105.9
Q ss_pred CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHh-----CCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchh
Q 018713 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSK-----YRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF 273 (351)
Q Consensus 199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~-----~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l 273 (351)
.+...+++++|+ .++.++++++++.++++.|.+ ++...+||+|+ +++++|+|+.+|++...
T Consensus 127 ~~~e~tvg~iMt----~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a~--------- 192 (449)
T TIGR00400 127 SYSDDSAGRIMT----IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLILAK--------- 192 (449)
T ss_pred CCCcchHHHhCc----CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhcCC---------
Confidence 478899999999 559999999999999999975 45678899987 47999999999986421
Q ss_pred hhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 274 ~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
...++++ +|. ++++++++++++.++++.|.+++...+||||+ +|+++|+||.+|+++.+.+.
T Consensus 193 ---~~~~v~~----im~-~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 193 ---PEEILSS----IMR-SSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred ---CCCcHHH----HhC-CCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHHhh
Confidence 2346777 586 77889999999999999999999999999998 89999999999999887654
No 71
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.41 E-value=3.8e-12 Score=101.20 Aligned_cols=111 Identities=17% Similarity=0.260 Sum_probs=92.6
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++.+++++.++++.|.+++.+.+||+++ ++++|+|+..|++..+.... ... ...++.+ +|. .++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~-~~~----~~~~v~~----i~~-~~~~ 69 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQG-LDP----ESTLVER----VMT-PNPV 69 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcC-CCc----CcCCHHH----hcC-CCCe
Confidence 4778999999999999999888999999986 58999999999986554321 100 1246777 475 7788
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++.+++++.++++.|.+++.+++||+++ +|+++|+||..|++.
T Consensus 70 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 70 CATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH 112 (113)
T ss_pred EEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence 9999999999999999999999999998 799999999999874
No 72
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.41 E-value=5.3e-12 Score=101.46 Aligned_cols=116 Identities=22% Similarity=0.387 Sum_probs=94.3
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchh-h---hhccCcccccccCccCC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF-D---IIASQPISDLGLPFMSS 291 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l-~---~l~~~~v~~L~~~~m~~ 291 (351)
++.++++++++.++++.|.+.+...+||+|+ |+++|+++..++.+........... + .....++.+ +|.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~- 74 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD----IMT- 74 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH----hcc-
Confidence 4678999999999999999989999999986 5999999999998876432110000 0 012345666 475
Q ss_pred CCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 292 ~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+++.++.+++++.++++.|.+++.+.+||+++ +|+++|+||..||++
T Consensus 75 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~ 121 (122)
T cd04585 75 RDPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR 121 (122)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence 78899999999999999999999999999997 899999999999985
No 73
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.41 E-value=2e-12 Score=119.37 Aligned_cols=119 Identities=19% Similarity=0.272 Sum_probs=108.6
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~ 282 (351)
..|.|+|+|. ....++.+++++.+..++-.+.+.+++||+|. ..+++|++|.+|+.... ...+++
T Consensus 188 ~~Vedi~~P~--~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~------------~~t~ie 252 (432)
T COG4109 188 ITVEDIMTPL--EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKK------------PSTTIE 252 (432)
T ss_pred eeHHHhcccc--ccceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCC------------CCccHH
Confidence 5899999977 88899999999999999999999999999998 58999999999986443 456788
Q ss_pred ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (351)
Q Consensus 283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~ 342 (351)
+ +|+ ++++++.+.+++..+.++|.-.++.-+||+|+ +.+++|+||++|+++.+.
T Consensus 253 K----VMt-knp~tv~~~tsVAsvaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~lq 306 (432)
T COG4109 253 K----VMT-KNPITVRAKTSVASVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred H----Hhc-cCCeeecccchHHHHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHHHH
Confidence 8 797 99999999999999999999999999999999 999999999999998764
No 74
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=6.3e-12 Score=100.45 Aligned_cols=112 Identities=20% Similarity=0.322 Sum_probs=93.2
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++.+++++.+|++.|.++++..+||+|++. ++++|+++..|++.++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------~~~~G~v~~~dl~~~~~~~~-------------------- 54 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRE-------SDAYGIVTMRDILKKVVAEG-------------------- 54 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCC-------CcEEEEEehHHHHHHHHhCC--------------------
Confidence 577899999999999999999999999998641 28999999999985432210
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
......++.++|. .
T Consensus 55 --------------------------------------------------------------~~~~~~~v~~~~~----~ 68 (114)
T cd04630 55 --------------------------------------------------------------RDPDRVNVYEIMT----K 68 (114)
T ss_pred --------------------------------------------------------------CCCCccCHHHHhc----C
Confidence 1123357889997 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++++++++.++++.|.+++.+.+||+|+ |+++|+|+..|+++
T Consensus 69 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 69 PLISVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 6999999999999999999999999999986 58999999999874
No 75
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.41 E-value=2.5e-12 Score=122.61 Aligned_cols=124 Identities=9% Similarity=0.114 Sum_probs=101.8
Q ss_pred ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA 121 (351)
Q Consensus 42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~ 121 (351)
..+++.++|.. .++++++++++|+.+|++.|.++++..+||+|+++ +++|+|+..|+...+. .
T Consensus 200 ~~~~V~dim~~-~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g--------~lvGivt~~Dl~~~~~-~------- 262 (326)
T PRK10892 200 LLLRVSDIMHT-GDEIPHVSKTASLRDALLEITRKNLGMTVICDDNM--------KIEGIFTDGDLRRVFD-M------- 262 (326)
T ss_pred ccCcHHHHhCC-CCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCC--------cEEEEEecHHHHHHHh-c-------
Confidence 56788999962 23899999999999999999999988888888653 8999999999873210 0
Q ss_pred hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713 122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK 201 (351)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~ 201 (351)
.....
T Consensus 263 ---------------------------------------------------------------------------~~~~~ 267 (326)
T PRK10892 263 ---------------------------------------------------------------------------GIDLR 267 (326)
T ss_pred ---------------------------------------------------------------------------CCCcc
Confidence 01123
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~ 263 (351)
..+|.++|+ .++.++.+++++.++++.|.+++++++||+++ ++++|+||++|++++
T Consensus 268 ~~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 268 QASIADVMT----PGGIRVRPGILAVDALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred cCCHHHhcC----CCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 467999999 56999999999999999999999999999985 589999999999764
No 76
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.3e-12 Score=103.52 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=88.5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH-----hhcCCCCchhhhhccCcccccccCccC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG-----LEGCKGRDWFDIIASQPISDLGLPFMS 290 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~-----l~~~~~~~~l~~l~~~~v~~L~~~~m~ 290 (351)
++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++..|+.+. ...+.. .....++.+ +|.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~-----~~~~~~v~~----im~ 71 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGI-----SRSELTVAD----VMT 71 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCC-----CchheEHHH----hcC
Confidence 37789999999999999998999999999974 799999999999852 211100 012345777 475
Q ss_pred CCCceE--E----cCCCcHHHHHHHHHhcCCCeeEEEeCCC-CeEEEEEeHHHHHH
Q 018713 291 SDEVIT--I----QSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRH 339 (351)
Q Consensus 291 ~~~v~~--V----~~~~~l~~al~~m~~~~~~~lpVvd~~~-g~liGiIt~~DIl~ 339 (351)
++... + .+++++.++++.|.+++.+.+||+|+ + |+++|+||.+||++
T Consensus 72 -~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-~~~~~~G~it~~di~~ 125 (126)
T cd04640 72 -PKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-EHHQIRGIISTSDIAR 125 (126)
T ss_pred -chhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-CCCEEEEEEeHHHHhh
Confidence 44333 3 36899999999999999999999998 6 79999999999975
No 77
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=4.2e-12 Score=101.42 Aligned_cols=111 Identities=20% Similarity=0.285 Sum_probs=89.7
Q ss_pred CcEEEcCCCCHHHHHHHHHHcC-ceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECN-ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~-i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
++.++++++++.+|++.|.+++ ...+||+|+++ +++|+|+..||+.....
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~dl~~~~~~--------------------- 52 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEG--------RYVGIISLADLRAIPTS--------------------- 52 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCC--------cEEEEEEHHHHHHHHHh---------------------
Confidence 5678999999999999998775 89999998743 79999999998842110
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
.....++.++|.+.
T Consensus 53 ----------------------------------------------------------------~~~~~~v~~~~~~~-- 66 (114)
T cd04801 53 ----------------------------------------------------------------QWAQTTVIQVMTPA-- 66 (114)
T ss_pred ----------------------------------------------------------------hccccchhhhhccc--
Confidence 01234677888633
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++.++.+++++.++++.|.+++.+++||+|+ +++++|+|+.+|+++
T Consensus 67 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 67 AKLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred ccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 34668999999999999999999999999987 379999999999864
No 78
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=6.2e-12 Score=101.77 Aligned_cols=122 Identities=21% Similarity=0.325 Sum_probs=96.2
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
++++++++++++.++++.|.++++..+||+++++ +++|+|+..|++.++......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~--------~~~Giv~~~~l~~~~~~~~~~----------------- 56 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDR--------RLVGIVTQRDLLRHARPDGRR----------------- 56 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCC--------CEEEEEEHHHHHhhhcccccc-----------------
Confidence 5788999999999999999999999999998743 899999999998543211000
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
.....+. ......++.++|.
T Consensus 57 ------------------------------------------------------~~~~~~~--~~~~~~~i~~~~~---- 76 (124)
T cd04600 57 ------------------------------------------------------PLRGRLR--GRDKPETVGDIMS---- 76 (124)
T ss_pred ------------------------------------------------------hhhhhhh--cccccccHHHhcc----
Confidence 0000000 1134457899998
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||..|+++
T Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~ 123 (124)
T cd04600 77 PPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA 123 (124)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence 55999999999999999999999999999997 489999999999874
No 79
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=6.2e-12 Score=99.97 Aligned_cols=110 Identities=21% Similarity=0.411 Sum_probs=91.7
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH-HhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-GLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~-~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v 294 (351)
++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..|++. .+..+.. ....++.+ +|. ..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~------~~~~~~~~----~~~-~~~ 68 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRD------PDTTTVGD----VMT-RGV 68 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCC------cccCCHHH----hcc-CCc
Confidence 4778999999999999999999999999986 69999999999873 3322211 01224777 475 788
Q ss_pred eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
.++.+++++.++++.|...+.+++||+++ +|+++|+|+..|+++
T Consensus 69 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 112 (113)
T cd04622 69 VTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR 112 (113)
T ss_pred cEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 89999999999999999999999999997 799999999999975
No 80
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=7.8e-12 Score=99.14 Aligned_cols=109 Identities=19% Similarity=0.259 Sum_probs=91.6
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.+.+...+||+++++ +++|+++..++..++...
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~--------~~~G~v~~~~l~~~~~~~--------------------- 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDG--------HLVGLLTRDDLIRALAEG--------------------- 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCC--------cEEEEeeHHHHHHHHHhc---------------------
Confidence 567899999999999999999999999998743 799999999987432111
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
....++.++|. .
T Consensus 53 ----------------------------------------------------------------~~~~~v~~~~~----~ 64 (111)
T cd04639 53 ----------------------------------------------------------------GPDAPVRGVMR----R 64 (111)
T ss_pred ----------------------------------------------------------------CCCCcHHHHhc----C
Confidence 12246788887 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++...+||++++ |+++|++|..|+.+
T Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 65 DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 58899999999999999999999999999873 79999999999864
No 81
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.39 E-value=2.3e-11 Score=120.57 Aligned_cols=124 Identities=17% Similarity=0.209 Sum_probs=105.5
Q ss_pred HHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHH
Q 018713 38 TAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAEL 117 (351)
Q Consensus 38 ~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~ 117 (351)
...+..+++.+++. ++++++.+++|+.+|++.|.++++..+||+|++ +++|+|+..|+..
T Consensus 82 ae~v~~VKv~eim~---~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~g---------klvGIVT~rDL~~-------- 141 (475)
T TIGR01303 82 KQTVAFVKSRDLVL---DTPITLAPHDTVSDAMALIHKRAHGAAVVILED---------RPVGLVTDSDLLG-------- 141 (475)
T ss_pred HHHHhhcchhhccc---cCCeEECCCCCHHHHHHHHHhcCCeEEEEEECC---------EEEEEEEHHHhhc--------
Confidence 34567788888876 678999999999999999999999999999853 7999999988641
Q ss_pred HhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhc
Q 018713 118 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE 197 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 197 (351)
T Consensus 142 -------------------------------------------------------------------------------- 141 (475)
T TIGR01303 142 -------------------------------------------------------------------------------- 141 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
.....++.++|+ .+++++++++++.+++++|.+++++.+||+|++ ++++|+||++||++.....
T Consensus 142 -~~~~~~V~dIMt----~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 142 -VDRFTQVRDIMS----TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT 205 (475)
T ss_pred -CCCCCCHHHHcc----CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC
Confidence 011256899999 569999999999999999999999999999974 7999999999999877543
No 82
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=4.6e-12 Score=102.25 Aligned_cols=117 Identities=21% Similarity=0.330 Sum_probs=93.8
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch---hhhhccCcccccccCccCCC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW---FDIIASQPISDLGLPFMSSD 292 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~---l~~l~~~~v~~L~~~~m~~~ 292 (351)
++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+++..|+++.......... .......++.+ +|. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~ 75 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK----IMS-T 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----Hhc-C
Confidence 4778999999999999999889999999987 4899999999999875321100000 00012345666 465 7
Q ss_pred CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 293 ~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+++.+..++++.+++..|.+++.+.+||+++ +|+++|++|..|+++
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~ 121 (122)
T cd04635 76 PVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLK 121 (122)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhc
Confidence 7889999999999999999999999999998 799999999999975
No 83
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=9.2e-12 Score=98.90 Aligned_cols=109 Identities=17% Similarity=0.331 Sum_probs=90.2
Q ss_pred cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceE
Q 018713 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (351)
Q Consensus 217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~ 296 (351)
+.++.+++++.++++.|.+++.+.++|.++ |+++|+++..|+++.+.+.. .. ....++.+ +|. .++.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~-~~----~~~~~v~~----~~~-~~~~~ 70 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHG-AG----VLDTTVRA----IMN-PEPIV 70 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcC-Cc----hhcCCHHH----HhC-CCCeE
Confidence 678999999999999998888877777654 69999999999998775321 00 12346777 475 67889
Q ss_pred EcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 297 V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+.+++++.+++++|.+++...+||+++ |+++|+||.+||+.
T Consensus 71 v~~~~~l~~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~ 111 (112)
T cd04625 71 ASPDDSIDEVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK 111 (112)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence 999999999999999999999999985 89999999999975
No 84
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=4.4e-12 Score=100.55 Aligned_cols=103 Identities=17% Similarity=0.340 Sum_probs=86.8
Q ss_pred ecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713 220 VATDDSMLSVLLLLSKYR-----LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (351)
Q Consensus 220 v~~~~sl~ea~~~m~~~~-----~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v 294 (351)
+.+++++.++++.|.+++ +..+||+|++ ++++|+++.+++++.- ...++.+ +|. .++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~------------~~~~v~~----~~~-~~~ 63 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD------------PDTPVSD----IMD-TDV 63 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC------------CcchHHH----HhC-CCC
Confidence 578899999999998766 4689999874 7999999999987521 1235666 465 778
Q ss_pred eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341 (351)
Q Consensus 295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l 341 (351)
..+.+++++.++++.|.+++.+.+||+|+ +|+++|+||..|+++.+
T Consensus 64 ~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 64 ISVSADDDQEEVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDVI 109 (109)
T ss_pred eEEcCCCCHHHHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhhC
Confidence 89999999999999999999999999997 79999999999998753
No 85
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.38 E-value=1.1e-11 Score=99.11 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=91.7
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++.+++++.+|++.|.+.++..+||+|+++ +++|+++..|+...+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~dl~~~~~~~--------------------- 52 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDG--------GVVGIITLPDLLRALEAD--------------------- 52 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCC--------CEEEEEEHHHHHHHHhcc---------------------
Confidence 356789999999999999999999999998753 899999999988432110
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
......++.++|. .
T Consensus 53 --------------------------------------------------------------~~~~~~~~~~~~~----~ 66 (115)
T cd04593 53 --------------------------------------------------------------EAGEPSAVDEVAT----P 66 (115)
T ss_pred --------------------------------------------------------------cccccccHHHhcc----C
Confidence 1112345778887 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~-~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++...+||+|++ +|+++|+||.+|+++
T Consensus 67 ~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 67 PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 58999999999999999999999999999873 268999999999975
No 86
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=1.3e-11 Score=98.06 Aligned_cols=110 Identities=23% Similarity=0.353 Sum_probs=92.1
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.++++.|.+.+.+.+||+|++ +++|+++..|+++.+...... ....++.+ +|. +++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~G~v~~~dl~~~~~~~~~~-----~~~~~~~~----~~~-~~~~ 69 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE--KPVGIITERDLVKKVVSRNLK-----PREVPVGE----VMS-TPLI 69 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEEHHHHHHHHhhccCC-----cccCCHHH----hcC-CCcE
Confidence 46789999999999999998889999999863 899999999999876432100 02345677 475 7888
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++.+++++.++++.|.+++.+.+||+|+ + +++|+|+..|++.
T Consensus 70 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~~ 111 (112)
T cd04802 70 TIDPNASLNEAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIVM 111 (112)
T ss_pred EECCCCCHHHHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhhc
Confidence 9999999999999999999999999997 4 9999999999874
No 87
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.38 E-value=6.3e-12 Score=128.60 Aligned_cols=131 Identities=13% Similarity=0.217 Sum_probs=108.7
Q ss_pred HHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHH
Q 018713 38 TAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAEL 117 (351)
Q Consensus 38 ~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~ 117 (351)
.+.+..++++++|. +++.++++++++.++++.|.+++...+||+|+++ +++|+|+..|+...+...
T Consensus 441 ~~~L~~~~V~dim~---~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g--------~lvGiVt~~dL~~~l~~~--- 506 (574)
T PRK01862 441 RERLRTTQMRELIQ---PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDG--------RFRGAVALKDITSDLLDK--- 506 (574)
T ss_pred hhHHhhCcHHHHhc---CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCC--------eEEEEEEHHHHHHHhhcc---
Confidence 35678899999997 5678899999999999999999999999999753 899999999987422110
Q ss_pred HhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhc
Q 018713 118 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE 197 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 197 (351)
T Consensus 507 -------------------------------------------------------------------------------- 506 (574)
T PRK01862 507 -------------------------------------------------------------------------------- 506 (574)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCC-CCEEEEEeHHHHHHHhhc
Q 018713 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT-PDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~-g~liGiIt~~dil~~l~~ 266 (351)
......++.++|+ .++.++++++++.++++.|.+++.+.+||+|+++ ++++|+||++|+++.+.+
T Consensus 507 ~~~~~~~v~dim~----~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 507 RDTTDKTAADYAH----TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred cccccchHHHhcc----CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 1122357889998 5588999999999999999999999999998742 479999999999998743
No 88
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1.5e-11 Score=97.55 Aligned_cols=112 Identities=24% Similarity=0.370 Sum_probs=92.9
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
++++++.+++++.++++.|.++++..+||+|+++ +++|+++..|++.++....
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~--------~~~Giv~~~~l~~~~~~~~------------------- 53 (113)
T cd04623 1 RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDGG--------RLVGIFSERDIVRKVALRG------------------- 53 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEECCCC--------CEEEEEehHHHHHHHhhcC-------------------
Confidence 3577899999999999999999999999998753 8999999999885432110
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
......++.++|.
T Consensus 54 ---------------------------------------------------------------~~~~~~~~~~~~~---- 66 (113)
T cd04623 54 ---------------------------------------------------------------ASALDTPVSEIMT---- 66 (113)
T ss_pred ---------------------------------------------------------------CCccccCHHHhcC----
Confidence 0112357888887
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++.++.+++++.++++.|.+.+.+.+||+++ |+++|+||.+|+++
T Consensus 67 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 67 RNVITVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 56899999999999999999999999999986 58999999999975
No 89
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=1.4e-11 Score=97.94 Aligned_cols=111 Identities=20% Similarity=0.409 Sum_probs=92.3
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++.+++++.+|++.|.++++..+||+|+++ +++|+++..|+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~--------~~~G~v~~~dl~~~~~~~--------------------- 52 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKK--------RLVGIITRYDVLSYALES--------------------- 52 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCC--------CEEEEEEHHHHHHhhhhh---------------------
Confidence 357889999999999999999999999998753 799999999987421110
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
..+...++.++|. .
T Consensus 53 --------------------------------------------------------------~~~~~~~i~~~~~----~ 66 (113)
T cd04615 53 --------------------------------------------------------------EELKDAKVREVMN----S 66 (113)
T ss_pred --------------------------------------------------------------hhhcCCcHHHhcc----C
Confidence 1133457888888 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++..|+++
T Consensus 67 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 67 PVITIDANDSIAKARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 58999999999999999999999999999884 79999999999864
No 90
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=1.2e-11 Score=97.84 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=90.2
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++++++++.+|++.|.+++...+||+|+++ +++|+++..++...
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~~l~~~------------------------- 49 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKN--------KVVGIVTSKDVAGK------------------------- 49 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCC--------eEEEEecHHHHhcc-------------------------
Confidence 578899999999999999999999999998643 89999998887610
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
....++.++|. .
T Consensus 50 ----------------------------------------------------------------~~~~~v~~~~~----~ 61 (108)
T cd04596 50 ----------------------------------------------------------------DPDTTIEKVMT----K 61 (108)
T ss_pred ----------------------------------------------------------------cccccHHHHhc----C
Confidence 11246788887 4
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++++++++.++++.|.+++.+.+||++++ |+++|++|..|+++
T Consensus 62 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 62 NPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 58899999999999999999999999999974 79999999999864
No 91
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.37 E-value=5.6e-12 Score=116.73 Aligned_cols=113 Identities=21% Similarity=0.350 Sum_probs=98.3
Q ss_pred CchHhhhhccCCCC-cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713 203 TTVRSIIKSYRWAP-FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (351)
Q Consensus 203 ~~V~dim~~~~~~~-~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v 281 (351)
.+|+++|. ++ +.++++++++.++++.|.+.+++.+||+|++ |+++|+++..|+++.+..... ...++
T Consensus 155 ~~v~~im~----~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~-------~~~~v 222 (268)
T TIGR00393 155 VKVKDLMQ----TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGS-------LKSEV 222 (268)
T ss_pred hhHHHHhC----CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCc-------ccCcH
Confidence 68999998 55 8899999999999999998899999999984 899999999999887643211 34568
Q ss_pred cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEe
Q 018713 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS 333 (351)
Q Consensus 282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt 333 (351)
.+ +|. ++++++.+++++.+|++.|.+++.+.+||+|+ +|+++|+|+
T Consensus 223 ~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~GvI~ 268 (268)
T TIGR00393 223 RD----FMT-LGPKTFKLDALLLEALEFLERRKITSLVVVDD-HNKVLGVLH 268 (268)
T ss_pred HH----hCC-CCCeEECCCCcHHHHHHHHHHcCCcEEEEECC-CCeEEEEEC
Confidence 88 575 78889999999999999999999999999998 889999985
No 92
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=1e-11 Score=97.32 Aligned_cols=102 Identities=26% Similarity=0.410 Sum_probs=88.6
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++.+++++.++++.|.+++.+.+||+|+ ++++|+++..++++.. ...++.+ +|. .++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~------------~~~~~~~----~~~-~~~~ 62 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAH------------PNRLVAD----AMT-REVV 62 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhccc------------ccCCHHH----Hcc-CCCE
Confidence 4678999999999999999888999999984 6999999999997642 1234566 475 7888
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl 338 (351)
++++++++.++++.|.+++...+||+|+ |+++|+||..|++
T Consensus 63 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~ 103 (105)
T cd04599 63 TISPEASLLEAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA 103 (105)
T ss_pred EECCCCCHHHHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence 9999999999999999999999999996 9999999999987
No 93
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.37 E-value=1.2e-11 Score=98.28 Aligned_cols=112 Identities=18% Similarity=0.315 Sum_probs=93.1
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
+++.++++++++.++++.|.++++..+||+|+++ +++|+++..|+..++...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~G~v~~~~l~~~~~~~-------------------- 52 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDG--------RLVGIVSLDDIREILFDP-------------------- 52 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCC--------CEEEEEEHHHHHHHHhcc--------------------
Confidence 3567899999999999999999999999998753 799999999987432100
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
......++.++|.
T Consensus 53 ---------------------------------------------------------------~~~~~~~v~~~~~---- 65 (114)
T cd04613 53 ---------------------------------------------------------------SLYDLVVASDIMT---- 65 (114)
T ss_pred ---------------------------------------------------------------cccccEEHHHhcc----
Confidence 1122367889998
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCCCEEEEEeHHHHHH
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQ 262 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~-~~g~liGiIt~~dil~ 262 (351)
.++.++.+++++.++++.|.+.+.+.+||+++ + ++++|+++..|++.
T Consensus 66 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~~Gvvt~~di~~ 113 (114)
T cd04613 66 KPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDP-GKLLGILSRSDLLS 113 (114)
T ss_pred CCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCC-CEEEEEEEhHHhhc
Confidence 55899999999999999999999999999986 4 68999999999864
No 94
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.37 E-value=6e-12 Score=119.67 Aligned_cols=123 Identities=12% Similarity=0.147 Sum_probs=102.6
Q ss_pred cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (351)
Q Consensus 43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~ 122 (351)
.++|.++|... +++.++++++|+.+|++.|.+++...+||+|+++ +++|+|+..|+..++..
T Consensus 196 ~~~V~~im~~~-~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g--------~~iG~vt~~dl~~~~~~--------- 257 (321)
T PRK11543 196 LNKVHHLMRRD-DAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQ--------QVQGVFTDGDLRRWLVG--------- 257 (321)
T ss_pred HhHHHHHhccC-CCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCC--------cEEEEecHHHHHHHHhC---------
Confidence 68999999721 2389999999999999999999999999999754 89999998887743210
Q ss_pred ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~ 202 (351)
.....
T Consensus 258 ---------------------------------------------------------------------------~~~~~ 262 (321)
T PRK11543 258 ---------------------------------------------------------------------------GGALT 262 (321)
T ss_pred ---------------------------------------------------------------------------CCCcC
Confidence 11123
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~ 263 (351)
.++.++|+ .++.++.+++++.++++.|.+++..++||+|++ |+++|+||+.|+++.
T Consensus 263 ~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~ 318 (321)
T PRK11543 263 TPVNEAMT----RGGTTLQAQSRAIDAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA 318 (321)
T ss_pred CcHHHhcC----CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence 56889998 558999999999999999999999999999974 799999999999754
No 95
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.36 E-value=1.2e-11 Score=99.01 Aligned_cols=107 Identities=18% Similarity=0.321 Sum_probs=88.5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE 293 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~ 293 (351)
++.++.+++++.++++.|.+++...+||+|++ +|+++|+++..|++.... ...++.+ +|. ..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-----------~~~~v~~----~~~-~~ 66 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-----------SETPLSE----VMT-PR 66 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-----------cCCCHHH----hcC-CC
Confidence 46789999999999999998889999999861 279999999999864321 1234666 464 56
Q ss_pred ceEEcC--CCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 294 VITIQS--NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 294 v~~V~~--~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
...+.. ++++.++++.|.+++...+||+++ +|+++|+||.+||++
T Consensus 67 ~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~ 113 (114)
T cd04602 67 EVLVVAPTGITLEEANEILRESKKGKLPIVND-DGELVALVTRSDLKK 113 (114)
T ss_pred ceEEECCCCCCHHHHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence 667766 999999999999999999999997 899999999999875
No 96
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.36 E-value=1.1e-11 Score=97.87 Aligned_cols=108 Identities=20% Similarity=0.330 Sum_probs=89.3
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++.+++++.++.+.|.+++.+.+||+|+ ++++|+++..|+.+.+.+.... ...++.+ +|. +++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~------~~~~~~~----~~~-~~~~ 68 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAK------FSLPVRE----VMG-EPLP 68 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccc------cCcCHHH----Hhc-CCCc
Confidence 4678999999999999999999999999986 5899999999999887543210 1345666 465 7788
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++++++++.+++++|.+ .. .+||+++ +|+++|+||.+||++
T Consensus 69 ~v~~~~~l~~~~~~~~~-~~-~~~vv~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04609 69 TVDPDAPIEELSELLDR-GN-VAVVVDE-GGKFVGIITRADLLK 109 (110)
T ss_pred eeCCCCcHHHHHHHHHh-CC-ceeEEec-CCeEEEEEeHHHhhc
Confidence 99999999999999988 33 4788987 899999999999975
No 97
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=2.1e-11 Score=98.39 Aligned_cols=120 Identities=18% Similarity=0.328 Sum_probs=94.8
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++.+++++.+|++.|.+.++..+||+++++ +++|+++..+++..+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~--------~~~G~v~~~~l~~~~~~~~~~~----------------- 56 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDG--------KLVGLLTQRDLLRAALSSLSDN----------------- 56 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCC--------CEEEEEEHHHHHHHhccccccc-----------------
Confidence 577899999999999999999999999998743 8999999999985432110000
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
.... . ......++.++|. .
T Consensus 57 ---------------------------------------------------~~~~---~---~~~~~~~v~~~~~----~ 75 (122)
T cd04803 57 ---------------------------------------------------GEES---L---TKERDVPVAEVMK----T 75 (122)
T ss_pred ---------------------------------------------------cccc---c---ccccCcCHHHhhC----C
Confidence 0000 0 1123467889997 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+.+.+.+||++++ |+++|++|..|+++
T Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 76 DVLTVTPDTPLREAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 58999999999999999999999999999984 79999999999975
No 98
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.36 E-value=2.3e-11 Score=95.48 Aligned_cols=111 Identities=22% Similarity=0.390 Sum_probs=93.1
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++.+++++.++++.|.+++.+.+||++++ ++++|+++..|+++.+...... ....+.+ +|. .++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~------~~~~~~~----~~~-~~~~ 69 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLD------PLVTVGD----VMT-RDVV 69 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCC------ccccHHH----Hhc-CCce
Confidence 36788999999999999999889999999984 7999999999999887543211 0111344 464 7888
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++.+++++.++++.|.+.+.+.+||+|+ +|+++|+|+..|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 112 (113)
T cd02205 70 TVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILR 112 (113)
T ss_pred ecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhc
Confidence 9999999999999999999999999998 899999999999875
No 99
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.7e-11 Score=99.36 Aligned_cols=124 Identities=18% Similarity=0.297 Sum_probs=95.7
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.+++++.++.+|++.|.+++...+||+|++. ++++|+|+..|+..++.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~-------~~~~G~v~~~dl~~~~~~~~~~~~~--------------- 59 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGT-------GKLVGIITATDILKYLGGGEKFNKI--------------- 59 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCC-------CEEEEEEEHHHHHHHhhccchhccc---------------
Confidence 567899999999999999999999999998752 2899999999998654322110000
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
. ... .......++.++|. .
T Consensus 60 ----------------------------------------~---------~~~--------~~~~~~~~~~~~~~----~ 78 (125)
T cd04631 60 ----------------------------------------K---------TGN--------GLEAINEPVRSIMT----R 78 (125)
T ss_pred ----------------------------------------c---------ccc--------cchhhhcCHHHHhc----C
Confidence 0 000 01123357888887 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~ 263 (351)
++.++++++++.++++.|.+.+.+.+||++++ |+++|+||..|++++
T Consensus 79 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~~ 125 (125)
T cd04631 79 NVITITPDDSIKDAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLKA 125 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhcC
Confidence 59999999999999999999999999999873 799999999999753
No 100
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.5e-11 Score=97.93 Aligned_cols=112 Identities=21% Similarity=0.350 Sum_probs=92.6
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.+++...+||+++++ +++|+++..+++..+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--------~~~G~v~~~~l~~~~~~~~~------------------- 54 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNG--------NLVGFLSEQDCLKQLLESSY------------------- 54 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCC--------eEEEEeehHHHHHHhhhhhh-------------------
Confidence 567899999999999999999999999998753 89999999998854322100
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
......++.++|. .
T Consensus 55 --------------------------------------------------------------~~~~~~~v~~~~~----~ 68 (114)
T cd04629 55 --------------------------------------------------------------HCDGVATVRDIMT----T 68 (114)
T ss_pred --------------------------------------------------------------ccCCCccHHHHhc----c
Confidence 0022356888887 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus 69 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 69 EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CceEECCCCcHHHHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 5889999999999999999999999999986 58999999999975
No 101
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.2e-11 Score=99.65 Aligned_cols=115 Identities=30% Similarity=0.464 Sum_probs=93.2
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch----hhhhccCcccccccCccCC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW----FDIIASQPISDLGLPFMSS 291 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~----l~~l~~~~v~~L~~~~m~~ 291 (351)
++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..++++.+........ ...+...++.+ +|.
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~- 74 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD----IMT- 74 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH----Hcc-
Confidence 4778999999999999999889999999986 599999999999877643211000 00112345666 475
Q ss_pred CCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 292 ~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
.++.++.+++++.+++.+|.+.+.+.+||+|+ |+++|+|+..|+++
T Consensus 75 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 75 RPVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred CCceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 78889999999999999999999999999997 89999999999975
No 102
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.4e-11 Score=98.47 Aligned_cols=114 Identities=17% Similarity=0.283 Sum_probs=90.4
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.++++..+||+|+++ +++|+++..|++.++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~--------~~~Giv~~~dl~~~~~~~~~------------------- 54 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEG--------KYVGTISLTDILWKLKGLEN------------------- 54 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCC--------cEEEEEeHHHHHHHhhccCc-------------------
Confidence 467899999999999999999999999998643 89999999999854321100
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
.+. ......++.++|. .
T Consensus 55 ----------------------------------------------------~~~-------~~~~~~~v~~~~~----~ 71 (116)
T cd04643 55 ----------------------------------------------------LDL-------ERLVDLKVIDVMN----T 71 (116)
T ss_pred ----------------------------------------------------hhH-------HHHhCCcHHHHhc----C
Confidence 000 0012357889998 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+.+ .+||+|+ +|+++|++|..|+++
T Consensus 72 ~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~ 115 (116)
T cd04643 72 DVPVIIDDADIEEILHLLIDQP--FLPVVDD-DGIFIGIITRREILK 115 (116)
T ss_pred CCceecCCCCHHHHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhc
Confidence 5899999999999999998754 5999987 479999999999875
No 103
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.3e-11 Score=100.53 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=89.9
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.++++..+||+|+++ +++|+++..|++...........
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~--------~~~Giv~~~dl~~~~~~~~~~~~---------------- 57 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKG--------KLIGNISASDLKGLLLSPDDLLL---------------- 57 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCC--------cEEEEEEHHHhhhhhcCcchhhc----------------
Confidence 577899999999999999999999999998753 89999999999854321100000
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
.+ ...+. .+. .......+.|. .
T Consensus 58 -------------~~------------------------------------~~~~~-~~~----~~~~~~~~~~~----~ 79 (126)
T cd04642 58 -------------YR------------------------------------TITFK-ELS----EKFTDSDGVKS----R 79 (126)
T ss_pred -------------cc------------------------------------chhhh-hhh----hhccccccccc----C
Confidence 00 00000 000 00011223444 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++++++++.++++.|.+++.+++||+|++ ++++|+||..|+++
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 68899999999999999999999999999984 79999999999864
No 104
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=1.4e-11 Score=101.72 Aligned_cols=133 Identities=20% Similarity=0.363 Sum_probs=95.6
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
+++.++++++++.+|++.|.+++..++||+|+++ +++|+++..|+.............+.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~--------~~~Gvi~~~dl~~~~~~~~~~~~~~~------------ 61 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDG--------RLVGIVSEGDLLRRAELGTERRRARW------------ 61 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCC--------CEEEEeeHHHHHHHhcccCcchhhhH------------
Confidence 5678999999999999999999999999998653 79999999999854322210000000
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
. .+. ....+..... ......++.++|.
T Consensus 62 ----------~---------~~~---------------------------~~~~~~~~~~---~~~~~~~v~~~~~---- 88 (135)
T cd04586 62 ----------L---------DLL---------------------------AGAEELAAAF---VRSHGRKVADVMT---- 88 (135)
T ss_pred ----------H---------HHh---------------------------cchHHHHHHH---HHhcCCCHHHHhC----
Confidence 0 000 0000000000 0123457899998
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++.++.+++++.++++.|.+.+.+++||+| + |+++|+||+.|+++
T Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~ 134 (135)
T cd04586 89 RPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR 134 (135)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence 5689999999999999999999999999999 4 69999999999875
No 105
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.35 E-value=1.9e-11 Score=98.39 Aligned_cols=116 Identities=19% Similarity=0.361 Sum_probs=93.3
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchh---hhhccCcccccccCccCCC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF---DIIASQPISDLGLPFMSSD 292 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l---~~l~~~~v~~L~~~~m~~~ 292 (351)
++.++++++++.++++.|.+.+..++||+|++ ++++|+++..++.+........... ......++.+ +|. .
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~-~ 75 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE----IMT-K 75 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----Hhh-C
Confidence 47789999999999999998889999999984 8999999999998765321100000 0112345666 465 7
Q ss_pred CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 293 ~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+++++..++++.++++.|.+++.+.+||+++ |+++|+++..||++
T Consensus 76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 76 DVITVHPLDTVEEAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 8889999999999999999999999999986 89999999999875
No 106
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.7e-11 Score=99.39 Aligned_cols=120 Identities=15% Similarity=0.222 Sum_probs=90.1
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++++++++.+|++.|.++++.++||+|++. ++++|+|+..|++.++........
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~-------~~~~Giv~~~dl~~~~~~~~~~~~---------------- 58 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEES-------GEVIGILSQRRLVEFLWENARSFP---------------- 58 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCC-------CcEEEEEEHHHHHHHHHHhHHhcc----------------
Confidence 567899999999999999999999999999751 279999999999865432211000
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
..+.. . .....+.++|. .
T Consensus 59 ---------------------------------------------------~~~~~---~----~~~~~~~~~~~----~ 76 (123)
T cd04627 59 ---------------------------------------------------GLDPL---Y----PIPLRDLTIGT----S 76 (123)
T ss_pred ---------------------------------------------------chhhh---h----hhhhhhcccCc----C
Confidence 00000 0 00012234565 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil 261 (351)
++.++++++++.+|++.|.+++.+++||+|++ ++++|+||.+|+.
T Consensus 77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 77 DVISINGDQPLIDALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 68899999999999999999999999999984 7999999999984
No 107
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=3e-11 Score=95.58 Aligned_cols=108 Identities=22% Similarity=0.331 Sum_probs=91.0
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
++++++.+++++.+|++.|.+++...+||+|+++ +++|+++..+++..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~~l~~~~~~--------------------- 52 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDG--------RLVGIVTSWDISKAVAR--------------------- 52 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCC--------cEEEEEeHHHHHHHHhh---------------------
Confidence 5788999999999999999999999999998653 89999999888732100
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
...++.++|.
T Consensus 53 ------------------------------------------------------------------~~~~~~~~~~---- 62 (110)
T cd04605 53 ------------------------------------------------------------------DKKSVEDIMT---- 62 (110)
T ss_pred ------------------------------------------------------------------CccCHHHhcC----
Confidence 0123777777
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++.++.+++++.++++.|.+++.+.+||++++ |+++|+||+.|+++
T Consensus 63 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~ 109 (110)
T cd04605 63 RNVITATPDEPIDVAARKMERHNISALPVVDAE-NRVIGIITSEDISK 109 (110)
T ss_pred CCCeEECCCCcHHHHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence 558899999999999999999999999999984 89999999999864
No 108
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.35 E-value=4e-11 Score=120.05 Aligned_cols=177 Identities=15% Similarity=0.198 Sum_probs=128.1
Q ss_pred cccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccc
Q 018713 46 VLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVG 125 (351)
Q Consensus 46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~ 125 (351)
+.+++. ++++++++++++.+|++.|.++++..+||+|+++ +++|+|+..|+...
T Consensus 89 ~~dim~---~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g--------~lvGiVt~~DL~~~--------------- 142 (486)
T PRK05567 89 SESGVV---TDPVTVTPDTTLAEALALMARYGISGVPVVDENG--------KLVGIITNRDVRFE--------------- 142 (486)
T ss_pred hhhccc---CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCC--------EEEEEEEHHHhhhc---------------
Confidence 455554 7899999999999999999999999999999643 89999999887620
Q ss_pred cccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCch
Q 018713 126 TATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTV 205 (351)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V 205 (351)
. ....++
T Consensus 143 ------------------------------------------------------------------------~-~~~~~V 149 (486)
T PRK05567 143 ------------------------------------------------------------------------T-DLSQPV 149 (486)
T ss_pred ------------------------------------------------------------------------c-cCCCcH
Confidence 0 112468
Q ss_pred HhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccc
Q 018713 206 RSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLG 285 (351)
Q Consensus 206 ~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~ 285 (351)
.++|++ .+++++.+++++.++++.|.+++++.+||+|++ |+++|+||.+|+++.+..... ....-..|
T Consensus 150 ~dim~~---~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a-------~~d~~g~l- 217 (486)
T PRK05567 150 SEVMTK---ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNA-------CKDEQGRL- 217 (486)
T ss_pred HHHcCC---CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCc-------ccccCCCE-
Confidence 888871 358899999999999999999999999999984 899999999999987632110 00001111
Q ss_pred cCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 018713 286 LPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 340 (351)
Q Consensus 286 ~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~ 340 (351)
+- ...+.+++ .-.+..+.|.+.+++ ++++|.+.|+..++++.-+.++.
T Consensus 218 ---~V-~aai~~~~--~~~e~a~~L~~agvd-vivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 218 ---RV-GAAVGVGA--DNEERAEALVEAGVD-VLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred ---EE-EeecccCc--chHHHHHHHHHhCCC-EEEEECCCCcchhHHHHHHHHHh
Confidence 00 11222223 227777888899998 55777545777777765555443
No 109
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.4e-11 Score=99.46 Aligned_cols=116 Identities=18% Similarity=0.315 Sum_probs=93.7
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch--hhh--hccCcccccccCccCC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--FDI--IASQPISDLGLPFMSS 291 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~--l~~--l~~~~v~~L~~~~m~~ 291 (351)
++.++++++++.++++.|.+++++.+||+|+ |+++|+++..++.+.+........ ..+ ....++.+ +|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~- 74 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ----IMT- 74 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH----hhc-
Confidence 4778999999999999999999999999986 589999999999886642110000 000 01235666 465
Q ss_pred CCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 292 ~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
.+++++.+++++.++++.|.+++...+||+++ +|+++|+++..|+++
T Consensus 75 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~ 121 (122)
T cd04637 75 RDPITVSPDTPVDEASKLLLENSISCLPVVDE-NGQLIGIITWKDLLK 121 (122)
T ss_pred CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhh
Confidence 78899999999999999999999999999998 799999999999985
No 110
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=2.7e-11 Score=96.72 Aligned_cols=110 Identities=16% Similarity=0.345 Sum_probs=88.2
Q ss_pred CcEEEcCCCCHHHHHHHHHHcC-ceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECN-ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~-i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
++.++++++++.+|++.|.+++ ...+||.+++ +++|+++..|++..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~dl~~~~~~~-------------------- 52 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKG---------RLLGIFTERDIVRLTAIG-------------------- 52 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCC---------cEEEEEeHHHHHHHHhcC--------------------
Confidence 4668999999999999998888 6677777742 799999999988432110
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
......++.++|.
T Consensus 53 ---------------------------------------------------------------~~~~~~~i~~~~~---- 65 (115)
T cd04620 53 ---------------------------------------------------------------KDLSDLPIGEVMT---- 65 (115)
T ss_pred ---------------------------------------------------------------CCccccCHHHhcC----
Confidence 1122356788887
Q ss_pred CCcEEecCC--CCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 215 APFLPVATD--DSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 215 ~~~~~v~~~--~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++.++.++ +++.++++.|.+++.+.+||+|++ |+++|+||++|+++
T Consensus 66 ~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 66 QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred CCcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 558888887 789999999999999999999984 89999999999975
No 111
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=3e-11 Score=96.25 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=91.0
Q ss_pred cEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccccc
Q 018713 57 VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGT 136 (351)
Q Consensus 57 ~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (351)
.+++++++++.+|++.|.+++...+||+|+++ +++|+++..|++..+..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~--------~~~G~v~~~dl~~~~~~----------------------- 52 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENG--------RLLGTVTDGDIRRALLK----------------------- 52 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCC--------CEEEEEEcHHHHHHHhc-----------------------
Confidence 46799999999999999999999999998753 79999999888743211
Q ss_pred ccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCC
Q 018713 137 VGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAP 216 (351)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~ 216 (351)
......++.++|. .+
T Consensus 53 -------------------------------------------------------------~~~~~~~v~~~~~----~~ 67 (113)
T cd04607 53 -------------------------------------------------------------GLSLDDPVSEVMN----RN 67 (113)
T ss_pred -------------------------------------------------------------CCCcCCCHHHhhc----CC
Confidence 1112356888887 55
Q ss_pred cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
+.++.+++++.++++.|.+++.+.+||++++ |+++|+||.+|++.
T Consensus 68 ~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 112 (113)
T cd04607 68 PITAKVGSSREEILALMRERSIRHLPILDEE-GRVVGLATLDDLLS 112 (113)
T ss_pred CEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence 8899999999999999999999999999974 79999999999863
No 112
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.34 E-value=1.1e-11 Score=97.92 Aligned_cols=106 Identities=20% Similarity=0.434 Sum_probs=88.8
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++.+++++.++++.|.+++...+||+|++ |+++|+++..+++.... ...++.+ +|. ..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-----------~~~~v~~----~~~-~~~~ 65 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-----------LDKPVSE----VMT-PENL 65 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-----------CCCCHHH----hcc-cCce
Confidence 47789999999999999998899999999984 89999999999854321 1345667 465 5555
Q ss_pred EEcC-CCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQS-NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~-~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
.+.. ++++.++++.|.+.+.+.+||+++ +|+++|+||.+|+++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~ 109 (110)
T cd04601 66 LTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK 109 (110)
T ss_pred EEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence 6666 999999999999999999999997 899999999999875
No 113
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.34 E-value=3.4e-11 Score=95.25 Aligned_cols=108 Identities=17% Similarity=0.334 Sum_probs=91.0
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.++++..+||+++ + +++|+++..|++.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~--------~~~G~v~~~~l~~~~~----------------------- 49 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-G--------KLVGIVTLSDIAHAIA----------------------- 49 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-C--------EEEEEEEHHHHHHHHh-----------------------
Confidence 5778999999999999999999999999987 3 8999999999884310
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
......++.++|. .
T Consensus 50 --------------------------------------------------------------~~~~~~~v~~~~~----~ 63 (110)
T cd04588 50 --------------------------------------------------------------RGLELAKVKDVMT----K 63 (110)
T ss_pred --------------------------------------------------------------ccccccCHHHHhc----C
Confidence 0011256778887 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++++++++.++++.|.+.+.+.+||++++ |+++|+|+..|+++
T Consensus 64 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 64 DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred CceEECCCCCHHHHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 68999999999999999999999999999884 79999999999864
No 114
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=2.4e-11 Score=99.88 Aligned_cols=131 Identities=22% Similarity=0.325 Sum_probs=95.5
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++.+++++.+|++.|.+++..++||+|+++ +++|+++..+|+.++......... +
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~--------~~~G~i~~~~l~~~~~~~~~~~~~--------~------ 59 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEG--------RVVGIVSEGDLIRKIYKGKGLFYV--------T------ 59 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCC--------CEEEEEeHHHHHHHHhccCCcccc--------c------
Confidence 567899999999999999999999999998753 899999999998654322100000 0
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
.+ ...... ..+..+ .....++.++|. .
T Consensus 60 ----~~------------------------------------~~~~~~---~~~~~~------~~~~~~v~~~~~----~ 86 (132)
T cd04636 60 ----LL------------------------------------YSVIFL---DESKIK------KLLGKKVEEIMT----K 86 (132)
T ss_pred ----cc------------------------------------cccccc---chHHHH------HHcCCCHHHhcc----C
Confidence 00 000000 011111 123347899998 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~ 263 (351)
++..+.+++++.++++.|.+.+.+.+||+|+ |+++|++|+.|++++
T Consensus 87 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~~ 132 (132)
T cd04636 87 KVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIRS 132 (132)
T ss_pred CceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhcC
Confidence 5889999999999999999999999999986 589999999999753
No 115
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=1.9e-11 Score=96.21 Aligned_cols=105 Identities=16% Similarity=0.353 Sum_probs=90.1
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v 294 (351)
+++.+++.+.++.++++.|.+.+...+||+|+ ++++|+++..|++..- ...++.+ +|. .++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~------------~~~~~~~----~~~-~~~ 62 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD------------PDETVEE----IMS-KDL 62 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC------------ccccHHH----hCC-CCC
Confidence 45788999999999999998888889999985 5899999999997421 1235667 465 778
Q ss_pred eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
.++.+++++.++++.|.+++.+.+||+++ +|+++|+|+..||++
T Consensus 63 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~ 106 (107)
T cd04610 63 VVAVPEMDIMDAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIR 106 (107)
T ss_pred eEECCCCCHHHHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhc
Confidence 89999999999999999999999999998 899999999999975
No 116
>PRK11573 hypothetical protein; Provisional
Probab=99.34 E-value=3.8e-11 Score=117.70 Aligned_cols=167 Identities=10% Similarity=0.126 Sum_probs=126.5
Q ss_pred HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (351)
Q Consensus 40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~ 119 (351)
.|++.++.++|. |+.++++++.++++.++++.+.+++.+++||++++ .++++|++...|++......
T Consensus 183 ~l~~~~v~eiMt-Pr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~-------~D~IiGiv~~kDll~~~~~~----- 249 (413)
T PRK11573 183 DLEKVTVDDIMV-PRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS-------LDDAISMLRVREAYRLMTEK----- 249 (413)
T ss_pred ccCCCChhhcCC-ccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC-------CCceEEEEEHHHHHHHhhcc-----
Confidence 467899999996 88999999999999999999999999999999865 34899999999998421100
Q ss_pred hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 199 (351)
..
T Consensus 250 ------------------------------------------------------------------------------~~ 251 (413)
T PRK11573 250 ------------------------------------------------------------------------------KE 251 (413)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 00
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
.....+.+++ +++..|++++++.++++.|.+++.+-+.|+|+. |...|+||.+|+++.+.... .+..+.....
T Consensus 252 ~~~~~l~~~~-----r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei-~de~d~~~~~ 324 (413)
T PRK11573 252 FTKENMLRAA-----DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDF-TTSMSPTLAE 324 (413)
T ss_pred CCHHHHHhhc-----cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCC-CcccCccccc
Confidence 1111233443 357899999999999999999999999999995 88999999999999987543 1222110111
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHH
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRM 310 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m 310 (351)
.+..+ ....+.|+..+++.++-+.+
T Consensus 325 ~i~~~------~~~~~~v~G~~~l~d~~~~l 349 (413)
T PRK11573 325 EVTPQ------NDGSVIIDGTANVREINKAF 349 (413)
T ss_pred ceEEe------cCCEEEEEeeeEHHHHHHHh
Confidence 23331 24567889999999998876
No 117
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=1.7e-11 Score=95.43 Aligned_cols=94 Identities=18% Similarity=0.343 Sum_probs=82.4
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++.+++++.+|++.|.++++..+||+|+++ +++|+++..|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~--------~~~Giv~~~dl~~~------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDG--------KLSGIITERDLIAK------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCC--------CEEEEEEHHHHhcC-------------------------
Confidence 577899999999999999999999999998653 89999999887710
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
.
T Consensus 49 -------------------------------------------------------------------------------~ 49 (96)
T cd04614 49 -------------------------------------------------------------------------------S 49 (96)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.+.++.+++++.++++.|.+++.+++||++++ |+++|+||++|+++
T Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~ 95 (96)
T cd04614 50 EVVTATKRTTVSECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLK 95 (96)
T ss_pred CcEEecCCCCHHHHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 15678999999999999999999999999984 79999999999874
No 118
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.34 E-value=2e-11 Score=96.03 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=86.5
Q ss_pred EEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceEE
Q 018713 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITI 297 (351)
Q Consensus 218 ~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~V 297 (351)
+++++++++.++++.|.+.+.+.+||+|+ ++++|+++..|+.+.. ..++.+ +|. ....++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~-------------~~~~~~----~~~-~~~~~v 63 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT-------------YGDVVD----YIV-RGIPYV 63 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc-------------ccchhh----hhh-cCCcEE
Confidence 56899999999999999999999999986 5899999999997532 123555 465 677899
Q ss_pred cCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 298 QSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 298 ~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++++++.++++.|.+++...+||+++ |+++|+||..|+++
T Consensus 64 ~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~ 103 (104)
T cd04594 64 RLTSTAEEAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD 103 (104)
T ss_pred cCCCCHHHHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence 99999999999999999999999985 89999999999875
No 119
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=3.4e-11 Score=98.24 Aligned_cols=125 Identities=20% Similarity=0.311 Sum_probs=94.3
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.+.+...+||+|+++ +++|+++..|+..++.........
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~--------~~~G~it~~dl~~~~~~~~~~~~~--------------- 58 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNG--------KLTGIVTRHDIVDFVVRDRDKART--------------- 58 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCC--------cEEEEEEHHHHHHHHhhhhhhcch---------------
Confidence 567899999999999999999999999999753 899999999998543222100000
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
... -.........++.++|. .
T Consensus 59 ----------------------------------------------------~~~---~~~~~~~~~~~~~~~~~----~ 79 (128)
T cd04632 59 ----------------------------------------------------GDR---SGEKERMLDLPVYDAMS----S 79 (128)
T ss_pred ----------------------------------------------------hhh---hhhhhhhccCcHHHHhc----C
Confidence 000 00001123457889998 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~-~~g~liGiIt~~dil~ 262 (351)
+++++++++++.++++.|.+.+.+.+||+++ ++++++|+||++|+++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 6999999999999999999999999999853 2479999999999875
No 120
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.33 E-value=3e-11 Score=96.53 Aligned_cols=109 Identities=27% Similarity=0.497 Sum_probs=94.6
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v 294 (351)
..+.++.++.++.++...|.++++..+||++.+ +++|++|.+|+++.+..... ...++.+ +|. .++
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~--~l~Giit~~di~~~~~~~~~-------~~~~v~~----v~~-~~~ 72 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDG--KLVGIITERDILRALAAGGK-------RLLPVKE----VMT-KPV 72 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC--EEEEEEEHHHHHHHHhccCC-------ccccHHH----hcc-CCc
Confidence 458899999999999999999999999999863 79999999999999865532 1114666 575 789
Q ss_pred eEEcCCCcHHHHHHHHHh-cCCCeeEEEeCCCC-eEEEEEeHHHHH
Q 018713 295 ITIQSNELILEAFKRMKD-NNIGGIPVVEGQQK-KIVGNVSIRDIR 338 (351)
Q Consensus 295 ~~V~~~~~l~~al~~m~~-~~~~~lpVvd~~~g-~liGiIt~~DIl 338 (351)
+++.+++++.++++.|.+ ++.+.+||+++ ++ +++|++|..|++
T Consensus 73 ~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di~ 117 (117)
T COG0517 73 VTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDIL 117 (117)
T ss_pred EEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHcC
Confidence 999999999999999999 79999999998 75 999999999973
No 121
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.33 E-value=3.8e-11 Score=95.23 Aligned_cols=110 Identities=25% Similarity=0.311 Sum_probs=91.4
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.+++...+||+|+ + +++|+++..|++..+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~--------~~~G~v~~~~l~~~~~~~--------------------- 51 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-D--------PRLGIVTRTDLLDAVLLD--------------------- 51 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-C--------eEEEEEEHHHHHHHHHcC---------------------
Confidence 4678999999999999999999999999987 3 799999998887422100
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
......++.++|. .
T Consensus 52 --------------------------------------------------------------~~~~~~~i~~~~~----~ 65 (111)
T cd04589 52 --------------------------------------------------------------GLPSSTPVGEIAT----F 65 (111)
T ss_pred --------------------------------------------------------------CCCCCCCHHHHhC----C
Confidence 1123467888998 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~ 263 (351)
++..+++++++.++++.|.+++.+.+||+++ ++++|+||..|++++
T Consensus 66 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~~ 111 (111)
T cd04589 66 PLITVDPDDFLFNALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLSF 111 (111)
T ss_pred CcEEECCCCcHHHHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhcC
Confidence 5889999999999999999999999999985 589999999999753
No 122
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.33 E-value=1.4e-11 Score=122.20 Aligned_cols=120 Identities=14% Similarity=0.187 Sum_probs=103.4
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v 281 (351)
..++.++|. ++++++.+++++.++++.|.+++++.+||+|+ ++++|+||.+|+... . ...++
T Consensus 87 ~VKv~eim~----~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~-----~-------~~~~V 148 (475)
T TIGR01303 87 FVKSRDLVL----DTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGV-----D-------RFTQV 148 (475)
T ss_pred hcchhhccc----cCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcC-----C-------CCCCH
Confidence 466778888 55899999999999999999999999999885 489999999998421 0 12468
Q ss_pred cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345 (351)
Q Consensus 282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~ 345 (351)
.+ +|+ .+++++++++++.+++++|.+++++.+||+|+ +|+++|+||.+||++....+.
T Consensus 149 ~d----IMt-~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~~~~ 206 (475)
T TIGR01303 149 RD----IMS-TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATIYTP 206 (475)
T ss_pred HH----Hcc-CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhCCc
Confidence 88 586 88999999999999999999999999999997 899999999999999776653
No 123
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.33 E-value=1.1e-11 Score=123.57 Aligned_cols=122 Identities=18% Similarity=0.237 Sum_probs=99.2
Q ss_pred chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (351)
Q Consensus 204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v 281 (351)
.|+++|.... ..+.++++++++.++++.|.++++..+||+|++ +++++|+||..|+.... . ....++
T Consensus 95 kVk~~~~g~i-~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--~--------~~~~~V 163 (502)
T PRK07107 95 RVKNYKAGFV-VSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--M--------SLDTKV 163 (502)
T ss_pred HHHHHhcCCc-CCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--c--------CCCCCH
Confidence 4555554110 124689999999999999999999999999862 37999999999985321 0 135678
Q ss_pred cccccCccCC-CCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713 282 SDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341 (351)
Q Consensus 282 ~~L~~~~m~~-~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l 341 (351)
++ +|+. ++++++++++++.+|+++|.++++..+||+|+ +|+++|+||.+||++..
T Consensus 164 ~d----IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 164 KD----FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSHK 219 (502)
T ss_pred HH----HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhcc
Confidence 88 5862 27889999999999999999999999999998 89999999999999864
No 124
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=3.1e-11 Score=100.08 Aligned_cols=133 Identities=11% Similarity=0.227 Sum_probs=94.6
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++++++++.+|++.|.+++...+||+|+++ +++|+++..|++.+.........
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~--------~~~Giv~~~dl~~~~~~~~~~~~---------------- 57 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNG--------KPVGVITYRDLAFAEFEDNERGL---------------- 57 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCC--------CEEEEEeHHHHHHHhhccccccc----------------
Confidence 456799999999999999999999999998753 89999999999865432110000
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
+.. +...+ . ...+..... ......++.++|. .
T Consensus 58 --------------~~~--~~~~~------------~-------------~~~~~~~~~---~~~~~~~v~~~~~----~ 89 (135)
T cd04621 58 --------------PKK--SIKMK------------R-------------KAGQKRYRY---VKEVPLVAEDIMT----E 89 (135)
T ss_pred --------------chh--hhhhh------------h-------------hcccccccc---cccccccHHHhcC----C
Confidence 000 00000 0 000000000 1123457999998 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++..+.+++++.++++.|.+++.+.+||+++ |+++|+||++|+++
T Consensus 90 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 90 EIITVSPNDDVVDAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 6889999999999999999999999999986 58999999999875
No 125
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.32 E-value=4.5e-11 Score=94.55 Aligned_cols=109 Identities=23% Similarity=0.362 Sum_probs=91.4
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++++++++.+|++.|.+++...+||++++ +++|+++..|+..+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~---------~~~G~v~~~~l~~~~~~~--------------------- 51 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDG---------RPLGIVTERDILRLLASG--------------------- 51 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCC---------EEEEEEeHHHHHHHHhcC---------------------
Confidence 56789999999999999999999999999862 899999999988432110
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
.....++.++|. .
T Consensus 52 ---------------------------------------------------------------~~~~~~v~~~~~----~ 64 (111)
T cd04611 52 ---------------------------------------------------------------PDLQTPVGEVMS----S 64 (111)
T ss_pred ---------------------------------------------------------------CCCCcCHHHhcC----C
Confidence 013456888887 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++++++++.++++.|.+.+.+.+||+|++ |+++|+|+.+|+++
T Consensus 65 ~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 65 PLLTVPADTSLYDARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CceEECCCCCHHHHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 58899999999999999999999999999984 79999999999864
No 126
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.32 E-value=3.5e-11 Score=95.60 Aligned_cols=111 Identities=18% Similarity=0.299 Sum_probs=91.4
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++.+++++.++++.|.+++...+||+++ + +++|+++..|++..+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~--------~~~G~v~~~dl~~~~~~~--------------------- 51 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-N--------KLVGIFTSKDIALRVVAQ--------------------- 51 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-C--------EEEEEEEhHHHHHHHHhc---------------------
Confidence 5678999999999999999999999999986 3 899999999987432211
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
.......++.++|. .
T Consensus 52 -------------------------------------------------------------~~~~~~~~v~~i~~----~ 66 (113)
T cd04587 52 -------------------------------------------------------------GLDPESTLVERVMT----P 66 (113)
T ss_pred -------------------------------------------------------------CCCcCcCCHHHhcC----C
Confidence 00011257888987 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++.+++||+++ +++++|+||..|++.
T Consensus 67 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 67 NPVCATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH 112 (113)
T ss_pred CCeEEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence 5889999999999999999999999999997 379999999999863
No 127
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.32 E-value=3.4e-11 Score=118.85 Aligned_cols=137 Identities=12% Similarity=0.197 Sum_probs=114.0
Q ss_pred HHHHhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCC
Q 018713 190 FYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (351)
Q Consensus 190 ~~~~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~ 269 (351)
....+.+--.+.+.+|+++|+|. .++..++.+.++.++.+.+.+++++|+||++++.+.++|+++.+|++........
T Consensus 193 E~~mi~~v~~l~~~~v~eiMtPR--~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~ 270 (429)
T COG1253 193 EREMINNVLDLDDRTVREIMTPR--TDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS 270 (429)
T ss_pred HHHHHHHHhccCCcEeeeEeeec--ccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc
Confidence 33334333458889999999976 8999999999999999999999999999999545789999999999998865431
Q ss_pred CchhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 270 RDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 270 ~~~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
. ..... .+ .+++.|++++++.++++.|++++.+-..|+|+ .|...|+||.+||++.+.+
T Consensus 271 -~-------~~~~~----~~--~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-yG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 271 -D-------LDLRV----LV--RPPLFVPETLSLSDLLEEFREERTHMAIVVDE-YGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred -c-------cchhh----cc--cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-CCCeEEEeEHHHHHHHHhC
Confidence 0 11111 12 48889999999999999999999998889999 9999999999999999876
No 128
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=5.6e-11 Score=94.35 Aligned_cols=110 Identities=26% Similarity=0.360 Sum_probs=91.9
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++++++++.+|++.|.++++..+||+|+++ +++|+++..|++.++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~--------~~~G~v~~~~l~~~~~~~--------------------- 52 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDE--------RPIGIVTERDIVRAVAAG--------------------- 52 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCC--------CEEEEeeHHHHHHHHhcc---------------------
Confidence 467899999999999999999999999998753 899999999987443111
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
.....++.++|. .
T Consensus 53 ---------------------------------------------------------------~~~~~~v~~~~~----~ 65 (112)
T cd04624 53 ---------------------------------------------------------------IDLDTPVSEIMT----R 65 (112)
T ss_pred ---------------------------------------------------------------CCCccCHHHhcc----C
Confidence 112346788887 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++...+||++++ |++.|++|..|+++
T Consensus 66 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 66 DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred CCEEECCCCcHHHHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 58899999999999999999899999999984 79999999999864
No 129
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.32 E-value=4.6e-11 Score=94.70 Aligned_cols=109 Identities=21% Similarity=0.349 Sum_probs=91.2
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++++++++.+|++.|.++++..+||+|+ + +++|+++..++...+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~--------~~~G~v~~~~l~~~~~~~--------------------- 51 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-G--------RLVGIVTDRDLRNRVVAE--------------------- 51 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-C--------EEEEEEEhHHHHHHHhcc---------------------
Confidence 5778999999999999999999999999986 2 899999999988432110
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
......++.++|. .
T Consensus 52 --------------------------------------------------------------~~~~~~~i~~~~~----~ 65 (111)
T cd04800 52 --------------------------------------------------------------GLDPDTPVSEVMT----A 65 (111)
T ss_pred --------------------------------------------------------------CCCccCCHHHHhC----C
Confidence 1122356888887 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++++++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus 66 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 66 PPITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 5899999999999999999999999999986 58999999999874
No 130
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=4.8e-11 Score=94.51 Aligned_cols=108 Identities=18% Similarity=0.288 Sum_probs=91.5
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
+++++++.+.++.+|++.|.+++...+||+|+ + +++|+++..|+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~--------~~~G~v~~~dl~~~~~---------------------- 50 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-G--------RVVGIISRRDVEKALR---------------------- 50 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-C--------EEEEEEEHHHHHHHHh----------------------
Confidence 46789999999999999999999999999987 3 7999999998773210
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
......++.++|.
T Consensus 51 ---------------------------------------------------------------~~~~~~~~~~~~~---- 63 (110)
T cd04595 51 ---------------------------------------------------------------HGLGHAPVKDYMS---- 63 (110)
T ss_pred ---------------------------------------------------------------cccccCcHHHHhc----
Confidence 0013457888888
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++.++.+++++.++++.|.+++.+.+||+++ |+++|+||+.|+++
T Consensus 64 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvvt~~di~~ 109 (110)
T cd04595 64 TDVVTVPPDTPLSEVQELMVEHDIGRVPVVED--GRLVGIVTRTDLLR 109 (110)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeeEEEeC--CEEEEEEEhHHhhc
Confidence 55889999999999999999999999999983 69999999999864
No 131
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.31 E-value=3.9e-11 Score=95.37 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=91.6
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++.+++++.++++.|.+.+.+.+||+|+++ +++|+++..++...+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~--------~~~G~v~~~~i~~~~~~~--------------------- 53 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDG--------RLVGIFTDGDLRRALEKG--------------------- 53 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCC--------CEEEEechHHHHHHHhcc---------------------
Confidence 456789999999999999988999999998753 899999988877432111
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
......++.++|. .
T Consensus 54 --------------------------------------------------------------~~~~~~~v~~~~~----~ 67 (114)
T cd04604 54 --------------------------------------------------------------LDILTLPVADVMT----R 67 (114)
T ss_pred --------------------------------------------------------------CccccCCHHHhhc----c
Confidence 1122347889998 4
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++++++++.++++.|.+++.+.+||++++ ++++|+|+..|+++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 68 NPKTIDPDALAAEALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 58899999999999999999999999999974 79999999999975
No 132
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=3.3e-11 Score=97.21 Aligned_cols=120 Identities=17% Similarity=0.285 Sum_probs=93.3
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.++++..+||+|+++ +++|+++..|++..........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~~l~~~~~~~~~~~----------------- 56 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAG--------ELIGIITRRDIIRAGSVRTSVE----------------- 56 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCC--------cEEEEEEcHHHHhhcccccccc-----------------
Confidence 578899999999999999999999999998643 8999999999884210000000
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
..... ......++.++|. .
T Consensus 57 ---------------------------------------------------~~~~~------~~~~~~~~~~~~~----~ 75 (122)
T cd04635 57 ---------------------------------------------------DQQRT------QTKASPTVEKIMS----T 75 (122)
T ss_pred ---------------------------------------------------chhhh------hhhccCcHHHHhc----C
Confidence 00000 0023456888887 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++.+.+||++++ |+++|++|..|+++
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 76 PVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 58999999999999999999999999999984 89999999999875
No 133
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.31 E-value=5.5e-11 Score=93.70 Aligned_cols=106 Identities=25% Similarity=0.354 Sum_probs=89.9
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++++++++.+|++.|.++++..+||+|+++ +++|+++..|++...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~--------~~~G~v~~~dl~~~~------------------------ 50 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDN--------KLLGIVSLESLEQAY------------------------ 50 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCC--------cEEEEEEHHHHHHHh------------------------
Confidence 567899999999999999999999999998753 799999998887321
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
....++.++|. .
T Consensus 51 ----------------------------------------------------------------~~~~~v~~~~~----~ 62 (109)
T cd04583 51 ----------------------------------------------------------------KEAKSLEDIML----E 62 (109)
T ss_pred ----------------------------------------------------------------hcCCcHhHhhc----C
Confidence 01135677887 4
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.+.++++++++.++++.|.+++.+++||++++ |+++|++|.+|+++
T Consensus 63 ~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 63 DVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred CceEECCCCcHHHHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 58899999999999999999999999999974 79999999999864
No 134
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.31 E-value=4.7e-11 Score=93.81 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=87.8
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.+++...+||+|+++ +++|+++..|++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g--------~~~Giv~~~dl~~~------------------------- 48 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADG--------QPLGFVTRREAARA------------------------- 48 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCC--------CEEEEEeHHHHHHh-------------------------
Confidence 467899999999999999999999999998643 89999999888721
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
...++.++|. .
T Consensus 49 -----------------------------------------------------------------~~~~~~~~~~----~ 59 (106)
T cd04582 49 -----------------------------------------------------------------SGGCCGDHAE----P 59 (106)
T ss_pred -----------------------------------------------------------------cccchhhhcc----c
Confidence 0023567776 4
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++..+.+++++.++++.|.+++...+||+|++ ++++|+|+.+++++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~ 105 (106)
T cd04582 60 FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD 105 (106)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 47789999999999999999999999999984 79999999999865
No 135
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=3.8e-11 Score=97.90 Aligned_cols=119 Identities=16% Similarity=0.194 Sum_probs=88.6
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++.+++++.+|++.|.+++...+||+|+++ +++|+++..|+.......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~--------~~~Giv~~~dl~~~~~~~--------------------- 52 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDD--------NFIGVITAVDLLGEEPIK--------------------- 52 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCC--------cEEEEEEHHHHhhChhhH---------------------
Confidence 467899999999999999999999999998653 799999999988311000
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhc-CCCCcCchHhhhhccCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE-EPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~-~~~~~~~V~dim~~~~~ 214 (351)
.+... ......++.++|.+.
T Consensus 53 ---------------------------------------------------------~~~~~~~~~~~~~v~~im~~~-- 73 (126)
T cd04640 53 ---------------------------------------------------------RIQEGGISRSELTVADVMTPK-- 73 (126)
T ss_pred ---------------------------------------------------------HHHHcCCCchheEHHHhcCch--
Confidence 00000 112345688999733
Q ss_pred CCcEEe----cCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 215 APFLPV----ATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 215 ~~~~~v----~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.....+ .+++++.++++.|.+++.+.+||+|++.|+++|+||.+|+++
T Consensus 74 ~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 74 EDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 111223 368899999999999999999999873268999999999864
No 136
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=6.5e-11 Score=94.04 Aligned_cols=111 Identities=20% Similarity=0.365 Sum_probs=91.1
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++.+++++.+|++.|.+++...+||+|+ + +++|+++..|++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~--------~~~G~i~~~~l~~~~~~~--------------------- 51 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-D--------RLVGIVTDRDIVVRAVAE--------------------- 51 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-C--------EEEEEEEhHHHHHHHhhc---------------------
Confidence 5778999999999999999999999999987 2 899999999986321110
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
.......++.++|. .
T Consensus 52 -------------------------------------------------------------~~~~~~~~~~~~~~----~ 66 (113)
T cd04622 52 -------------------------------------------------------------GRDPDTTTVGDVMT----R 66 (113)
T ss_pred -------------------------------------------------------------cCCcccCCHHHhcc----C
Confidence 01112235888888 4
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.+.++.+++++.++++.|...+.+++||++++ |+++|+++..|+++
T Consensus 67 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 67 GVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred CccEECCCCCHHHHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 58899999999999999999999999999874 79999999999864
No 137
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.30 E-value=3.6e-11 Score=95.11 Aligned_cols=100 Identities=16% Similarity=0.333 Sum_probs=87.0
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE 293 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~ 293 (351)
....+.+++++.++.+.+.+.+...+||+|++ +|+++|+|+.+|+.+.... +|. .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------~m~-~~ 60 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------YID-PS 60 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------hcc-CC
Confidence 35678999999999999999888899999872 2789999999999776632 154 67
Q ss_pred ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+.++++++++.++++.|.+++.+++||++ +|+++|+||..|+++
T Consensus 61 ~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 61 PFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK 104 (105)
T ss_pred CceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence 88999999999999999999999999996 499999999999975
No 138
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=4.3e-11 Score=94.80 Aligned_cols=102 Identities=25% Similarity=0.359 Sum_probs=85.3
Q ss_pred EcCCCCHHHHHHHHHHcC-----ceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 60 IMADTTIPDAVKILSECN-----ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 60 v~~~~sl~~al~~m~~~~-----i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
+++++++.++++.|.+++ +..+||+|+++ +++|+++..+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~--------~~~G~v~~~~l~~~------------------------ 49 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEG--------RLLGVVSLRDLLLA------------------------ 49 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCC--------CEEEEEEHHHHhcC------------------------
Confidence 578899999999999877 57899998653 89999998777610
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
....++.++|.
T Consensus 50 -----------------------------------------------------------------~~~~~v~~~~~---- 60 (109)
T cd04606 50 -----------------------------------------------------------------DPDTPVSDIMD---- 60 (109)
T ss_pred -----------------------------------------------------------------CCcchHHHHhC----
Confidence 01245778887
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~ 263 (351)
.++..+.+++++.++++.|..++.+.+||+|++ ++++|+||..|+++.
T Consensus 61 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~ 108 (109)
T cd04606 61 TDVISVSADDDQEEVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV 108 (109)
T ss_pred CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence 458899999999999999999999999999874 799999999999865
No 139
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=8.3e-11 Score=93.34 Aligned_cols=111 Identities=20% Similarity=0.353 Sum_probs=91.8
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
+++.++++++++.+|++.|.+++...+||+|++ +++|+++..|++.++....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~dl~~~~~~~~------------------- 52 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDNE---------KPVGIITERDLVKKVVSRN------------------- 52 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEECC---------EEEEEEEHHHHHHHHhhcc-------------------
Confidence 357789999999999999999999999999863 7999999999885432110
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
......++.++|.
T Consensus 53 ---------------------------------------------------------------~~~~~~~~~~~~~---- 65 (112)
T cd04802 53 ---------------------------------------------------------------LKPREVPVGEVMS---- 65 (112)
T ss_pred ---------------------------------------------------------------CCcccCCHHHhcC----
Confidence 0112356888887
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++.++.+++++.++++.|.+++.+.+||+|++ +++|+|+.+|+++
T Consensus 66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~ 111 (112)
T cd04802 66 TPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM 111 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence 558899999999999999999999999999873 8999999999864
No 140
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=6.4e-11 Score=92.80 Aligned_cols=102 Identities=15% Similarity=0.279 Sum_probs=87.4
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.++++.|.++++..+||+|++ +++|+++..+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~---------~~~Giv~~~~l~~~------------------------- 47 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDG---------KLVGIITSRDVRRA------------------------- 47 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECC---------EEEEEEehHHhhcc-------------------------
Confidence 56789999999999999999999999999742 89999999887720
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
....++.++|. .
T Consensus 48 ----------------------------------------------------------------~~~~~~~~~~~----~ 59 (105)
T cd04599 48 ----------------------------------------------------------------HPNRLVADAMT----R 59 (105)
T ss_pred ----------------------------------------------------------------cccCCHHHHcc----C
Confidence 11235778887 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil 261 (351)
++.++++++++.++++.|.+++...+||+|+ |+++|+||..|++
T Consensus 60 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~ 103 (105)
T cd04599 60 EVVTISPEASLLEAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA 103 (105)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence 5889999999999999999999999999986 5999999999986
No 141
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.29 E-value=9.5e-11 Score=92.67 Aligned_cols=109 Identities=15% Similarity=0.257 Sum_probs=90.5
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.+.++..+||+|+ + +++|+++..|+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~--------~~~G~v~~~dl~~~~~~---------------------- 50 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-G--------RLVGIVTLADIRRVPAE---------------------- 50 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-C--------eEEEEEEHHHHHHHHhc----------------------
Confidence 5678999999999999999999999999987 3 89999999998732100
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
......++.++|. .
T Consensus 51 --------------------------------------------------------------~~~~~~~~~~~~~----~ 64 (111)
T cd04612 51 --------------------------------------------------------------GREATVLVGDVMT----R 64 (111)
T ss_pred --------------------------------------------------------------CcccccCHHHhcc----C
Confidence 0011135677787 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..|+++
T Consensus 65 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 110 (111)
T cd04612 65 DPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR 110 (111)
T ss_pred CCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence 6999999999999999999999999999988 379999999999865
No 142
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.29 E-value=9.8e-11 Score=92.78 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=88.5
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.++++..+||++++. ++++|+++..+++......
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~-------~~~~G~v~~~~l~~~~~~~--------------------- 53 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDL-------DNIIGVVHVKDLLRALAEG--------------------- 53 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCC-------ceEEEEEEHHHHHHHHHcC---------------------
Confidence 578899999999999999999999999998751 2799999999988432100
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
....++.+++.
T Consensus 54 ----------------------------------------------------------------~~~~~~~~~~~----- 64 (111)
T cd04590 54 ----------------------------------------------------------------EEDLDLRDLLR----- 64 (111)
T ss_pred ----------------------------------------------------------------CCcCCHHHHhc-----
Confidence 00134555543
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++.+.+||+++ +|+++|+||++|+++
T Consensus 65 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 110 (111)
T cd04590 65 PPLFVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE 110 (111)
T ss_pred CCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence 3778999999999999999999999999998 479999999999864
No 143
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.29 E-value=5.1e-11 Score=118.65 Aligned_cols=122 Identities=20% Similarity=0.322 Sum_probs=101.0
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
+...+++++|. +++.++.+++++.++++.|.+++++.+||+|++ ++++|+|+..|+++.+...... ...
T Consensus 332 l~~~~v~~im~----~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~------~~~ 400 (454)
T TIGR01137 332 LKNATVKDLHL----PAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKAN------PDD 400 (454)
T ss_pred hccCCHHHhCc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCC------cCC
Confidence 45678999998 559999999999999999998899999999984 7999999999999876542210 234
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l 341 (351)
++.+ +|. .++.++++++++.++++.|.+++ .+||++ +|+++|+||.+||++.+
T Consensus 401 ~v~~----im~-~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 401 AVSK----VMS-KKFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CHHH----hcC-CCCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence 6777 576 78889999999999999998764 355655 69999999999999876
No 144
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=8.2e-11 Score=92.48 Aligned_cols=105 Identities=18% Similarity=0.327 Sum_probs=89.3
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
+++++++.++++.++++.|.+++...+||+|+ + +++|+++..|++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~--------~~~g~v~~~~l~~~------------------------ 48 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-G--------KVVGIVSARDLLGK------------------------ 48 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-C--------EEEEEEEHHHhhcc------------------------
Confidence 46788999999999999999888889999986 2 89999998887710
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
....++.++|.
T Consensus 49 -----------------------------------------------------------------~~~~~~~~~~~---- 59 (107)
T cd04610 49 -----------------------------------------------------------------DPDETVEEIMS---- 59 (107)
T ss_pred -----------------------------------------------------------------CccccHHHhCC----
Confidence 11235778887
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++.++.+++++.++++.|.+++.+++||++++ |+++|+++..|+++
T Consensus 60 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 60 KDLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred CCCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 558889999999999999999999999999984 89999999999874
No 145
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=7.1e-11 Score=93.67 Aligned_cols=109 Identities=17% Similarity=0.293 Sum_probs=90.7
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++..+++++++.+|++.|.++++..+||+|+++ +++|+++..|+..+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~--------~~~G~v~~~dl~~~~~~---------------------- 51 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEE--------KLKGVVTFTDILDLDLF---------------------- 51 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCC--------CEEEEEehHHhHHHHhh----------------------
Confidence 567899999999999999999999999998743 89999999998743110
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
......++.++|. .
T Consensus 52 --------------------------------------------------------------~~~~~~~v~~~~~----~ 65 (111)
T cd04626 52 --------------------------------------------------------------ESFLEKKVFNIVS----Q 65 (111)
T ss_pred --------------------------------------------------------------cccccCcHHHHhc----C
Confidence 0012346788887 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++.+.+||+++ |+++|+||..|++.
T Consensus 66 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 66 DVFYVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 6889999999999999999999999999986 58999999999863
No 146
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=8.4e-11 Score=92.54 Aligned_cols=104 Identities=27% Similarity=0.437 Sum_probs=88.3
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++.+++++.+++..|.+.+...+||++++ ++++|+++..+++... ...++.+ +|. .++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~------------~~~~~~~----~~~-~~~~ 63 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNP------------EEEQLAL----LMT-RDPP 63 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhcc------------ccchHHH----Hhc-CCCc
Confidence 36788999999999999998889999999984 7999999999996421 1123455 464 6788
Q ss_pred EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
++..++++.+++..|.+++.+.+||+|+ |+++|+||..|+++
T Consensus 64 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 64 TVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred eECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 8999999999999999999999999996 79999999999875
No 147
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.28 E-value=3e-11 Score=119.74 Aligned_cols=120 Identities=23% Similarity=0.394 Sum_probs=101.5
Q ss_pred chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCC--CCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT--PDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (351)
Q Consensus 204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~--g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v 281 (351)
..++.|. .++.++++++++.++++.|.+++++++||+|++. ++++|+|+.+|++.... ...++
T Consensus 81 ~~~~~~~----~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-----------~~~~V 145 (450)
T TIGR01302 81 RAENGII----SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD-----------KGKPV 145 (450)
T ss_pred cccCcee----cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-----------CCCCH
Confidence 3455676 4589999999999999999999999999998732 68999999999964321 23467
Q ss_pred cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.+ +|...+++++++++++.++++.|.+++.+.+||+|+ +|+++|+||.+||++.+..
T Consensus 146 ~d----vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~~~ 202 (450)
T TIGR01302 146 SE----VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRRKF 202 (450)
T ss_pred HH----hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhcccC
Confidence 77 574238899999999999999999999999999998 9999999999999998653
No 148
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.27 E-value=3.7e-11 Score=119.93 Aligned_cols=113 Identities=12% Similarity=0.193 Sum_probs=94.6
Q ss_pred cEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccccc
Q 018713 57 VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGT 136 (351)
Q Consensus 57 ~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (351)
..++++++|+.+|++.|.++++..+||+|++.. .++++|+|+..||...
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~-----~gkLvGIVT~~DLr~~-------------------------- 155 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTA-----HGKLLGIVTSRDYRIS-------------------------- 155 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCc-----CCEEEEEEEcHHhhcc--------------------------
Confidence 358999999999999999999999999986210 1289999998887510
Q ss_pred ccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCC
Q 018713 137 VGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAP 216 (351)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~ 216 (351)
......+|.++|++. .+
T Consensus 156 -------------------------------------------------------------~~~~~~~V~dIMt~~--~~ 172 (502)
T PRK07107 156 -------------------------------------------------------------RMSLDTKVKDFMTPF--EK 172 (502)
T ss_pred -------------------------------------------------------------ccCCCCCHHHHhCCC--CC
Confidence 012346799999953 46
Q ss_pred cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (351)
Q Consensus 217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l 264 (351)
++++.+++++.+|++.|.+++++.+||+|+ +++++|+||.+|+++..
T Consensus 173 ~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 173 LVTANEGTTLKEANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSHK 219 (502)
T ss_pred eEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhcc
Confidence 889999999999999999999999999997 47999999999998865
No 149
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.27 E-value=5.9e-11 Score=118.71 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=97.9
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCC
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 292 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~ 292 (351)
.+++++++++++.++++.|.+++++.+||+|++ +++++|+||.+|+.... . ...++.+ +|+ +
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~----~-------~~~~V~e----IMt-~ 171 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN----D-------RETKLSE----VMT-S 171 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc----c-------cCCcHHH----Hhc-c
Confidence 458999999999999999999999999999862 26999999999995322 1 3457888 575 4
Q ss_pred C--ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 293 E--VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 293 ~--v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
+ ++++.+++++.++++.|.+++.+.+||+|+ +++++|+||.+||++.+...
T Consensus 172 ~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~~~p 224 (505)
T PLN02274 172 DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVKGYP 224 (505)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhCc
Confidence 5 789999999999999999999999999998 89999999999999988653
No 150
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.26 E-value=6.6e-11 Score=117.83 Aligned_cols=127 Identities=16% Similarity=0.231 Sum_probs=102.8
Q ss_pred HHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713 36 TLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (351)
Q Consensus 36 ~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~ 115 (351)
.+.+.|.++++.++|. +++.++.+++++.+|++.|.++++..+||+|+++ +++|+|+..|++..+...
T Consensus 327 ~~~~~l~~~~v~~im~---~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~- 394 (454)
T TIGR01137 327 TVFDVLKNATVKDLHL---PAPVTVHPTETVGDAIEILREYGFDQLPVVTEAG--------KVLGSVTLRELLSALFAG- 394 (454)
T ss_pred cHHHHhccCCHHHhCc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC--------eEEEEEEHHHHHHHHhcc-
Confidence 3556799999999996 6799999999999999999999999999998653 799999999988533211
Q ss_pred HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhh
Q 018713 116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL 195 (351)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ 195 (351)
T Consensus 395 -------------------------------------------------------------------------------- 394 (454)
T TIGR01137 395 -------------------------------------------------------------------------------- 394 (454)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713 196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (351)
Q Consensus 196 ~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l 264 (351)
......++.++|. .++.++++++++.++++.|.+++ .+|+++ +++++|+||++|+++++
T Consensus 395 --~~~~~~~v~~im~----~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 395 --KANPDDAVSKVMS----KKFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred --CCCcCCCHHHhcC----CCCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence 1122347889998 55889999999999999998753 345554 36999999999999875
No 151
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=1.3e-10 Score=92.26 Aligned_cols=110 Identities=20% Similarity=0.321 Sum_probs=88.6
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
.+.++.+++++.+|++.|.+++...++|.+++ +++|+++..|+..++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~dl~~~~~~~~-------------------- 52 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERG---------ELVGLLTFREVLQAMAQHG-------------------- 52 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCC---------EEEEEEEHHHHHHHHHhcC--------------------
Confidence 45689999999999999998888777776542 8999999999885432110
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
......++.++|. .
T Consensus 53 --------------------------------------------------------------~~~~~~~v~~~~~----~ 66 (112)
T cd04625 53 --------------------------------------------------------------AGVLDTTVRAIMN----P 66 (112)
T ss_pred --------------------------------------------------------------CchhcCCHHHHhC----C
Confidence 0112356889997 4
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++..++||+++ |+++|+||.+|+++
T Consensus 67 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~ 111 (112)
T cd04625 67 EPIVASPDDSIDEVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK 111 (112)
T ss_pred CCeEECCCCCHHHHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence 5889999999999999999999999999984 58999999999975
No 152
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=8.8e-11 Score=98.18 Aligned_cols=115 Identities=23% Similarity=0.352 Sum_probs=92.7
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCC-Cch----------------------
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG-RDW---------------------- 272 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~-~~~---------------------- 272 (351)
++.++++++++.++++.|.+.+++.+||+|+ ++++|+++..|+++++..... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET 79 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence 4778999999999999999999999999986 589999999999887643220 000
Q ss_pred ---hhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 273 ---FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 273 ---l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
.+.....++.+ +|. .++.++.+++++.+++..|.+++.+.+||+++ |+++|+|+..|+++
T Consensus 80 ~~~~~~~~~~~v~~----~~~-~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 80 KRALTDAGKMKVRD----IMT-KKVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHhcCCHHH----HcC-CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 00012334555 465 78899999999999999999999999999987 89999999999874
No 153
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.26 E-value=1e-10 Score=93.94 Aligned_cols=120 Identities=21% Similarity=0.291 Sum_probs=93.9
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++.+++++.+|++.|.++++..+||+|+ + +++|+++..++..+........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~--------~~~G~i~~~~l~~~~~~~~~~~----------------- 55 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-G--------KLVGIVTDRDLKLASPSKATTL----------------- 55 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-C--------eEEEEEeHHHHHHhhhcccccc-----------------
Confidence 5678999999999999999999999999987 2 8999999999985432110000
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
...+.. ......++.++|. .
T Consensus 56 --------------------------------------------------~~~~~~------~~~~~~~~~~~~~----~ 75 (122)
T cd04585 56 --------------------------------------------------DIWELY------YLLSKIKVSDIMT----R 75 (122)
T ss_pred --------------------------------------------------cchhhh------hhhcccCHHHhcc----C
Confidence 000000 0023457888888 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.+++..|.+++.+.+||+++ +|+++|+||..|+++
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~ 121 (122)
T cd04585 76 DPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR 121 (122)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence 5899999999999999999999999999987 479999999999975
No 154
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.26 E-value=6.4e-11 Score=118.61 Aligned_cols=119 Identities=22% Similarity=0.411 Sum_probs=102.6
Q ss_pred chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD 283 (351)
Q Consensus 204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~ 283 (351)
.++++|. .++.++++++++.++++.|.+++++++||+|+ +++++|+|+.+|+.... . ...++.+
T Consensus 88 ~~~dim~----~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~~~~----~-------~~~~V~d 151 (486)
T PRK05567 88 RSESGVV----TDPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVRFET----D-------LSQPVSE 151 (486)
T ss_pred hhhhccc----CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhhhcc----c-------CCCcHHH
Confidence 4678888 56999999999999999999999999999998 48999999999995421 1 2346777
Q ss_pred cccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 284 L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
+|..++++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||.+||++.+..
T Consensus 152 ----im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~~~ 206 (486)
T PRK05567 152 ----VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAEEF 206 (486)
T ss_pred ----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhhhC
Confidence 474367899999999999999999999999999998 8999999999999987643
No 155
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=1.1e-10 Score=93.69 Aligned_cols=113 Identities=15% Similarity=0.246 Sum_probs=90.1
Q ss_pred CcEEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713 216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~-~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v 294 (351)
++.++++++++.++++.|...+ ++.+||+|+ |+++|+++..|+++.+..... .+.....++.+ +|. .++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~---~~~~~~~~v~~----~~~-~~~ 71 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYG---RALYGKKPVSE----VMD-PDP 71 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhh---HHHHcCCcHHH----hcC-CCc
Confidence 3667899999999999998776 889999987 689999999999876643110 00112446777 575 788
Q ss_pred eEEcCCCcHHHHHHHHHhcCCC---eeEEEeCCCCeEEEEEeHHHHHH
Q 018713 295 ITIQSNELILEAFKRMKDNNIG---GIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 295 ~~V~~~~~l~~al~~m~~~~~~---~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+++.+++++.+++..|.+++.. ..+|+++ +|+++|+||..|+++
T Consensus 72 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 72 LIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred EEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 9999999999999999988753 3468887 799999999999875
No 156
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.25 E-value=1.4e-10 Score=92.68 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=87.4
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++.+++++.+|++.|.++++..+||+|+... .++++|+++..|++..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~-----~~~~~G~v~~~dl~~~------------------------- 52 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKS-----GGKLLGIVTSRDIDFL------------------------- 52 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCc-----CCEEEEEEEhHHhhhh-------------------------
Confidence 5678999999999999999999999999986210 1289999998887611
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
. ....++.++|. .
T Consensus 53 --------------------------------------------------------------~-~~~~~v~~~~~----~ 65 (114)
T cd04602 53 --------------------------------------------------------------T-DSETPLSEVMT----P 65 (114)
T ss_pred --------------------------------------------------------------h-ccCCCHHHhcC----C
Confidence 0 01245788887 3
Q ss_pred CcEEecC--CCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVAT--DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~--~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
+..++.. ++++.++++.|.+++.+.+||++++ |+++|+||++|+++
T Consensus 66 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 66 REVLVVAPTGITLEEANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 3666655 9999999999999999999999874 79999999999864
No 157
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.24 E-value=1.7e-10 Score=91.00 Aligned_cols=109 Identities=20% Similarity=0.311 Sum_probs=87.6
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.++++..+||+++ + +++|+++..|+..++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~--------~~~G~v~~~dl~~~~~~~--------------------- 51 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-G--------RVVGSIDESDLLDALIEG--------------------- 51 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-C--------eeEEEEeHHHHHHHHhcc---------------------
Confidence 5678999999999999999999999999986 3 799999999988543211
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
......++.++|. .
T Consensus 52 --------------------------------------------------------------~~~~~~~~~~~~~----~ 65 (110)
T cd04609 52 --------------------------------------------------------------KAKFSLPVREVMG----E 65 (110)
T ss_pred --------------------------------------------------------------ccccCcCHHHHhc----C
Confidence 0011356788887 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~ 263 (351)
++.++++++++.++++.|.+ . ..+||+++ +|+++|+||++|++++
T Consensus 66 ~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~-~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 66 PLPTVDPDAPIEELSELLDR-G-NVAVVVDE-GGKFVGIITRADLLKY 110 (110)
T ss_pred CCceeCCCCcHHHHHHHHHh-C-CceeEEec-CCeEEEEEeHHHhhcC
Confidence 58899999999999999987 3 34788887 4799999999999754
No 158
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.7e-10 Score=93.06 Aligned_cols=121 Identities=13% Similarity=0.188 Sum_probs=93.7
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.+|++.|.++++..+||+|+ + +++|+++..++...+.........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~--------~~~G~v~~~~l~~~~~~~~~~~~~--------------- 57 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-N--------ELVGVISDRDYLKAISPFLGTAGE--------------- 57 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-C--------eEEEEEEHHHHHHHHHHHhccccc---------------
Confidence 5678999999999999999999999999986 2 799999999998654321100000
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
..+++ . ....++.++|. .
T Consensus 58 --------------------------------------------------~~~~~-~-------~~~~~~~~~~~----~ 75 (122)
T cd04637 58 --------------------------------------------------TEKDL-A-------TLNRRAHQIMT----R 75 (122)
T ss_pred --------------------------------------------------hHHHH-H-------HHHhHHHHhhc----C
Confidence 00010 0 01245788887 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~ 263 (351)
++..+.+++++.++++.|.+++...+||+|++ ++++|+++..|++++
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~~ 122 (122)
T cd04637 76 DPITVSPDTPVDEASKLLLENSISCLPVVDEN-GQLIGIITWKDLLKY 122 (122)
T ss_pred CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhhC
Confidence 59999999999999999999999999999874 799999999999753
No 159
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.24 E-value=1.2e-10 Score=116.56 Aligned_cols=116 Identities=11% Similarity=0.114 Sum_probs=98.0
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
++++++++++|+.+|++.|.++++..+||+|++.. .++++|+|+..||...
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~-----~GklvGIVT~~DL~~v------------------------ 158 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTM-----GSKLLGYVTKRDWDFV------------------------ 158 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCc-----CCeEEEEEEHHHHhhc------------------------
Confidence 68899999999999999999999999999986310 1289999999887610
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
. ....+|.++|++.
T Consensus 159 ---------------------------------------------------------------~-~~~~~V~eIMt~~-- 172 (505)
T PLN02274 159 ---------------------------------------------------------------N-DRETKLSEVMTSD-- 172 (505)
T ss_pred ---------------------------------------------------------------c-ccCCcHHHHhccC--
Confidence 0 1246799999844
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
.+++++.+++++.++++.|.+++.+.+||+|++ ++++|+||++|+++.+..
T Consensus 173 ~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 173 DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhC
Confidence 448899999999999999999999999999984 799999999999998853
No 160
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.24 E-value=1.5e-10 Score=91.40 Aligned_cols=107 Identities=21% Similarity=0.337 Sum_probs=88.1
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
++++++++++++.++++.|.+++...+||+|+++ +++|+++..++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~~l~~~------------------------ 49 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDG--------KLVGIVTNRDLRFE------------------------ 49 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCC--------EEEEEEEhhHeeec------------------------
Confidence 4678899999999999999999999999998753 89999998776510
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
. ....++.++|.
T Consensus 50 ---------------------------------------------------------------~-~~~~~v~~~~~---- 61 (110)
T cd04601 50 ---------------------------------------------------------------T-DLDKPVSEVMT---- 61 (110)
T ss_pred ---------------------------------------------------------------c-cCCCCHHHhcc----
Confidence 0 12346788887
Q ss_pred CCcEEecC-CCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 215 APFLPVAT-DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 215 ~~~~~v~~-~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++..+.+ ++++.++++.|.+.+.+.+||+++ +|+++|+||.+|+++
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~ 109 (110)
T cd04601 62 PENLLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK 109 (110)
T ss_pred cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence 33566666 999999999999999999999997 479999999999864
No 161
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.1e-10 Score=93.87 Aligned_cols=119 Identities=18% Similarity=0.329 Sum_probs=93.5
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++.+++++.+|++.|.++++..+||+|+ + +++|+++..++...+........
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~-------~~~G~v~~~~l~~~~~~~~~~~~---------------- 56 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--G-------KLVGIVTEKDIADALRSFRPLVR---------------- 56 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--C-------EEEEEEchHHHHHhhhhhhhccc----------------
Confidence 5678999999999999999999999999986 2 89999999999854432110000
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
... . .......++.++|. .
T Consensus 57 ---------------------------------------------------~~~----~--~~~~~~~~~~~~~~----~ 75 (121)
T cd04633 57 ---------------------------------------------------DRH----Q--ERRIRNLPVSDIMT----R 75 (121)
T ss_pred ---------------------------------------------------chh----h--hhhhhccCHHHHcc----C
Confidence 000 0 01123457888888 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+|+..|+++
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 76 PVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 5899999999999999999999999999986 58999999999975
No 162
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.23 E-value=3.4e-10 Score=88.69 Aligned_cols=111 Identities=22% Similarity=0.354 Sum_probs=91.0
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++++++++.++++.|.+++...+||+++++ +++|+++..+++.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~G~v~~~~l~~~~~~~~~------------------- 54 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDG--------RLVGIVTERDLLRALAEGGL------------------- 54 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCC--------CEEEEEeHHHHHHHHHhccC-------------------
Confidence 567899999999999999999999999998753 89999999999855322100
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
.....+.++|. .
T Consensus 55 ----------------------------------------------------------------~~~~~~~~~~~----~ 66 (113)
T cd02205 55 ----------------------------------------------------------------DPLVTVGDVMT----R 66 (113)
T ss_pred ----------------------------------------------------------------CccccHHHHhc----C
Confidence 00112567777 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+.+.+.+||+|++ ++++|+++..|+++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 67 DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred CceecCCCcCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 58889999999999999999999999999984 89999999999864
No 163
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.22 E-value=2.9e-10 Score=90.76 Aligned_cols=108 Identities=22% Similarity=0.397 Sum_probs=92.4
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
..++++.++.++.+|+..|.++++..+||.+.+ +++|+++..|++..+....
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~---------~l~Giit~~di~~~~~~~~------------------- 58 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDG---------KLVGIITERDILRALAAGG------------------- 58 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC---------EEEEEEEHHHHHHHHhccC-------------------
Confidence 578899999999999999999999999999864 6999999999995532220
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
....++.++|+
T Consensus 59 -----------------------------------------------------------------~~~~~v~~v~~---- 69 (117)
T COG0517 59 -----------------------------------------------------------------KRLLPVKEVMT---- 69 (117)
T ss_pred -----------------------------------------------------------------CccccHHHhcc----
Confidence 01116888898
Q ss_pred CCcEEecCCCCHHHHHHHHHh-CCCCEEEEEcCCCC-CEEEEEeHHHH
Q 018713 215 APFLPVATDDSMLSVLLLLSK-YRLRNVPIIEPGTP-DIKNYITQSAV 260 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~-~~~~~vpVvd~~~g-~liGiIt~~di 260 (351)
.++.++.++.++.++++.|.+ ++++++||++++ + +++|++|.+|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di 116 (117)
T COG0517 70 KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDD-GGKLVGIITLSDI 116 (117)
T ss_pred CCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHc
Confidence 569999999999999999999 799999999984 5 99999999997
No 164
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.21 E-value=9.3e-11 Score=117.20 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=99.9
Q ss_pred hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (351)
Q Consensus 205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~ 282 (351)
.++.|. .+++++++++++.+++++|.+++++.+||+|++ +++++|+||.+|+.... . ...++.
T Consensus 98 ~e~g~i----~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~----------~~~~V~ 162 (495)
T PTZ00314 98 FENGFI----MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-D----------KSTPVS 162 (495)
T ss_pred cccccc----cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-c----------CCCCHH
Confidence 445666 448899999999999999999999999999873 26899999999986211 1 245688
Q ss_pred ccccCccCCC--CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 283 DLGLPFMSSD--EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 283 ~L~~~~m~~~--~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
+ +|+ + +++++++++++.+++++|.+++...+||+|+ +++++|+||.+||++....
T Consensus 163 d----iMt-~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~~~ 219 (495)
T PTZ00314 163 E----VMT-PREKLVVGNTPISLEEANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNRGY 219 (495)
T ss_pred H----hhC-CcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhcccC
Confidence 8 585 5 7899999999999999999999999999998 8999999999999987543
No 165
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.20 E-value=4.4e-10 Score=90.31 Aligned_cols=119 Identities=21% Similarity=0.276 Sum_probs=92.8
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++++++++.+|++.|.+++.+.+||+|+++ +++|+++..++..........
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~~l~~~~~~~~~~------------------ 55 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEG--------RLVGIVTDRDLRDASPSPFTT------------------ 55 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCC--------cEEEEEEHHHHHHHhhhhccc------------------
Confidence 567899999999999999999999999999753 899999999987432111000
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
+....+ ......++.++|. .
T Consensus 56 -----------------------------------------------------~~~~~~---~~~~~~~v~~~~~----~ 75 (121)
T cd04584 56 -----------------------------------------------------LSEHEL---YLLLKMPVKEIMT----K 75 (121)
T ss_pred -----------------------------------------------------chhhhh---hhhcCcCHHHHhh----C
Confidence 000000 0133467889998 5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++.+.+||+++ ++++|+++..|+++
T Consensus 76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 76 DVITVHPLDTVEEAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 5899999999999999999999999999986 58999999999864
No 166
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.18 E-value=7.4e-10 Score=110.74 Aligned_cols=114 Identities=18% Similarity=0.191 Sum_probs=96.6
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
.+++++++++|+.+|++.|.++++..+||+|++.. .++++|+|+..|+...
T Consensus 104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~-----~gkLvGIVt~~DL~~~------------------------ 154 (495)
T PTZ00314 104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKV-----GGKLLGIVTSRDIDFV------------------------ 154 (495)
T ss_pred cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCcc-----CCeEEEEEEHHHHhhc------------------------
Confidence 67789999999999999999999999999986411 1389999999887610
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
.....+|.++|++.
T Consensus 155 ----------------------------------------------------------------~~~~~~V~diMt~~-- 168 (495)
T PTZ00314 155 ----------------------------------------------------------------KDKSTPVSEVMTPR-- 168 (495)
T ss_pred ----------------------------------------------------------------ccCCCCHHHhhCCc--
Confidence 01246799999842
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l 264 (351)
.+++++++++++.+++++|.+++++.+||+|++ ++++|+||++|+++..
T Consensus 169 ~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 169 EKLVVGNTPISLEEANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNR 217 (495)
T ss_pred CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcc
Confidence 368999999999999999999999999999984 8999999999998775
No 167
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.18 E-value=8.7e-11 Score=109.66 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=110.7
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
+...+|+|+|.+. ..+..+..+++..++++.+....+.++|++.++-+.++|+++.+|+++++.+.... ...
T Consensus 197 Le~~tV~DIMvpR--~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~------~k~ 268 (423)
T COG4536 197 LENLTVSDIMVPR--NEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEF------TKE 268 (423)
T ss_pred cccceeeeeeccc--cceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcc------cHh
Confidence 6678999999976 89999999999999999999999999999976556799999999999999776421 222
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.+..+ . .++++|++.+++.+.+..|.+++.+.-.|||+ .|.+.|+||.+||++-+-+
T Consensus 269 d~~~~----a--~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 269 DILRA----A--DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred HHHHH----h--cCCeecCCCCcHHHHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHHhc
Confidence 33331 1 68899999999999999999999998889999 9999999999999987643
No 168
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.18 E-value=3.2e-10 Score=115.44 Aligned_cols=131 Identities=18% Similarity=0.311 Sum_probs=104.3
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCC------------
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR------------ 270 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~------------ 270 (351)
.+|+++|. +++.++++++++.+|++.|.+++++.+||+|++ |+++|+||..|+.+.+......
T Consensus 68 ~~V~dim~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 68 PQVRDLEI----DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CcHHHhcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 68999999 569999999999999999999999999999984 8999999999998865432100
Q ss_pred ----------------c---------------hhhhh-------------------------------------------
Q 018713 271 ----------------D---------------WFDII------------------------------------------- 276 (351)
Q Consensus 271 ----------------~---------------~l~~l------------------------------------------- 276 (351)
. .++.+
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence 0 00000
Q ss_pred ---------------------ccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHH
Q 018713 277 ---------------------ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335 (351)
Q Consensus 277 ---------------------~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~ 335 (351)
...++++ +|++++++++++++++.++.+.|.+++.+.+||+|+ +|+++|+||..
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~----iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-~g~lvGiit~~ 297 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLINQSIPVSY----IMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-DGKVVGVISRY 297 (546)
T ss_pred hCCCeEEEecccHHHHHHHhhcCCCHHH----hccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC-CCCEEEEEEHH
Confidence 0011111 464257889999999999999999999999999998 89999999999
Q ss_pred HHHHHhcC
Q 018713 336 DIRHLLLK 343 (351)
Q Consensus 336 DIl~~l~~ 343 (351)
|+++....
T Consensus 298 dl~~~~~~ 305 (546)
T PRK14869 298 HLLSPVRK 305 (546)
T ss_pred HhhccccC
Confidence 99987654
No 169
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.17 E-value=4.8e-10 Score=111.25 Aligned_cols=121 Identities=17% Similarity=0.261 Sum_probs=99.7
Q ss_pred ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713 45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV 124 (351)
Q Consensus 45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~ 124 (351)
...+.+. ++++++++++|+.+|++.|.+++++.+||+|++.. .++++|+|+..|++..
T Consensus 81 ~~~~~~~---~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~-----~~~lvGIVt~rDL~~~-------------- 138 (450)
T TIGR01302 81 RAENGII---SDPVTISPETTVADVLELMERKGISGIPVVEDGDM-----TGKLVGIITKRDIRFV-------------- 138 (450)
T ss_pred cccCcee---cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCC-----CCeEEEEEEHHHHhhh--------------
Confidence 3445554 68899999999999999999999999999987520 0289999999888621
Q ss_pred ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713 125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT 204 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~ 204 (351)
. ....+
T Consensus 139 -------------------------------------------------------------------------~-~~~~~ 144 (450)
T TIGR01302 139 -------------------------------------------------------------------------K-DKGKP 144 (450)
T ss_pred -------------------------------------------------------------------------h-cCCCC
Confidence 0 12357
Q ss_pred hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
+.++|++ .+++++++++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++.+.
T Consensus 145 V~dvm~~---~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 145 VSEVMTR---EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRRK 201 (450)
T ss_pred HHHhhCC---CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhccc
Confidence 8889972 258999999999999999999999999999984 89999999999998763
No 170
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.17 E-value=2.4e-10 Score=105.76 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=106.9
Q ss_pred CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (351)
Q Consensus 44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~ 123 (351)
+.|.+++. |..+.-.+.+++++.+-.++-.+.+..++||+|... +++|+|+..|+.
T Consensus 188 ~~Vedi~~-P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~--------kvvGvVt~rDv~--------------- 243 (432)
T COG4109 188 ITVEDIMT-PLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSM--------KVVGVVTMRDVL--------------- 243 (432)
T ss_pred eeHHHhcc-ccccceeccccccHHHHHHHHHHcCCCccceecccc--------eEEEEEEehhhh---------------
Confidence 66788886 667788899999999999999999999999999864 899999998877
Q ss_pred cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~ 203 (351)
...+..
T Consensus 244 --------------------------------------------------------------------------~~~~~t 249 (432)
T COG4109 244 --------------------------------------------------------------------------DKKPST 249 (432)
T ss_pred --------------------------------------------------------------------------cCCCCc
Confidence 235668
Q ss_pred chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
++..+|+ ++++++.+.+++..+.+.|.-.++.-+||+|+ +.+++|+||++|+++.+.
T Consensus 250 ~ieKVMt----knp~tv~~~tsVAsvaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~lq 306 (432)
T COG4109 250 TIEKVMT----KNPITVRAKTSVASVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred cHHHHhc----cCCeeecccchHHHHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHHHH
Confidence 8999999 55999999999999999999999999999998 589999999999999885
No 171
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.16 E-value=1e-09 Score=108.31 Aligned_cols=166 Identities=15% Similarity=0.182 Sum_probs=123.9
Q ss_pred HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (351)
Q Consensus 40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~ 119 (351)
.|++.++.++|. |+.+++.++.+.++.++.+.+.+++.+++||++++ .++++|++...|++........
T Consensus 202 ~l~~~~v~eiMt-PR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~-------~D~iiGiv~~Kdll~~~~~~~~--- 270 (429)
T COG1253 202 DLDDRTVREIMT-PRTDIVALDLTDTVEELIELILESGHSRIPVYDGD-------LDNIIGIVHVKDLLRALLDGQS--- 270 (429)
T ss_pred ccCCcEeeeEee-ecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC-------CCcEEEEEEHHHHHHHHhcCcc---
Confidence 467899999997 78999999999999999999999999999999944 4589999999999954322100
Q ss_pred hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 199 (351)
T Consensus 271 -------------------------------------------------------------------------------- 270 (429)
T COG1253 271 -------------------------------------------------------------------------------- 270 (429)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
.......+ .+++.+++++++.++++.|++.+.|-..|+|+. |.+.|+||.+|+++.+.... .+..+.....
T Consensus 271 --~~~~~~~~-----~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy-G~~~GlVTleDIiEeIvGei-~de~d~~~~~ 341 (429)
T COG1253 271 --DLDLRVLV-----RPPLFVPETLSLSDLLEEFREERTHMAIVVDEY-GGVEGLVTLEDIIEEIVGEI-PDEHDEDEEE 341 (429)
T ss_pred --ccchhhcc-----cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC-CCeEEEeEHHHHHHHHhCCC-cCcccccccc
Confidence 00001111 258899999999999999999999999999996 89999999999999987543 2222211111
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHH
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMK 311 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~ 311 (351)
.+-.. .. .. ..++..+++.+..+.+-
T Consensus 342 ~~~~~----~~-~~-~~v~G~~~l~e~~~~l~ 367 (429)
T COG1253 342 DIIQR----DD-DG-WLVDGRVPLEELEELLG 367 (429)
T ss_pred cceEe----cC-Cc-EEEeccccHHHHHHHhC
Confidence 22221 11 34 67888888888877653
No 172
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.16 E-value=5.1e-10 Score=87.94 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=84.5
Q ss_pred EEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccccc
Q 018713 58 IEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTV 137 (351)
Q Consensus 58 i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
+++++++++.+|++.|.+.+...+||+|+ + +++|+++..|+...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~--------~~~G~v~~~~l~~~--------------------------- 47 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-N--------KFLGAVYLKDIENA--------------------------- 47 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-C--------EEEEEEEHHHHhhh---------------------------
Confidence 57899999999999999999999999986 3 89999998887621
Q ss_pred cccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCc
Q 018713 138 GALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPF 217 (351)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~ 217 (351)
...++.++|. .++
T Consensus 48 ---------------------------------------------------------------~~~~~~~~~~----~~~ 60 (104)
T cd04594 48 ---------------------------------------------------------------TYGDVVDYIV----RGI 60 (104)
T ss_pred ---------------------------------------------------------------cccchhhhhh----cCC
Confidence 0123566776 448
Q ss_pred EEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 218 ~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++.+++++.++++.|.+++...+||+++ |+++|++|..|++.
T Consensus 61 ~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~ 103 (104)
T cd04594 61 PYVRLTSTAEEAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD 103 (104)
T ss_pred cEEcCCCCHHHHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence 89999999999999999999999999984 69999999999864
No 173
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=9.9e-10 Score=91.77 Aligned_cols=140 Identities=21% Similarity=0.329 Sum_probs=95.2
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+++++++++++.++++.|.++++..+||+|+ + +++|+++..|+..++.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~--------~~~G~v~~~dl~~~~~~~~~~~~~--------------- 57 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-G--------KLVGIVSESDILKLLVTHDPSGNL--------------- 57 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-C--------eEEEEecHHHHHHHHHhccCcccc---------------
Confidence 5678999999999999999999999999986 2 799999999998655332100000
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhh-hHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLH-EDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
...+.... ...+.. +... .+...... .....++.++|.
T Consensus 58 ----------~~~~~~~~----------------------~~~~~~--~~~~~~~~~~~~~---~~~~~~v~~~~~---- 96 (143)
T cd04634 58 ----------WLPSPLEL----------------------IELPLR--EFINWEETKRALT---DAGKMKVRDIMT---- 96 (143)
T ss_pred ----------ccCCccee----------------------eeccch--heeehHHHHHHHH---HHhcCCHHHHcC----
Confidence 00000000 000000 0000 01111111 123467889998
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++.++++++++.+++..|.+.+.+.+||+++ ++++|+++..|+++
T Consensus 97 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 97 KKVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 55999999999999999999999999999986 58999999999864
No 174
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.13 E-value=4.2e-10 Score=104.20 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=94.8
Q ss_pred CccccCCCCCCCC-cEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713 44 IPVLSFPNVPGGR-VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (351)
Q Consensus 44 ~~v~~~~~~~~~~-~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~ 122 (351)
+++.++|. ++ +.++.+++++.+|++.|.+.++..+||+|+++ +++|+|+..|+..++..
T Consensus 155 ~~v~~im~---~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g--------~~~Givt~~dl~~~~~~--------- 214 (268)
T TIGR00393 155 VKVKDLMQ---TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENN--------QLVGVFTDGDLRRALLG--------- 214 (268)
T ss_pred hhHHHHhC---CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCC--------CEEEEEEcHHHHHHHhc---------
Confidence 67888886 44 88999999999999999999999999998753 89999999998742110
Q ss_pred ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~ 202 (351)
.....
T Consensus 215 ---------------------------------------------------------------------------~~~~~ 219 (268)
T TIGR00393 215 ---------------------------------------------------------------------------GGSLK 219 (268)
T ss_pred ---------------------------------------------------------------------------CCccc
Confidence 11234
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEe
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYIT 256 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt 256 (351)
.++.++|. .++.++.+++++.++++.|.+++.+++||+|++ |+++|+|+
T Consensus 220 ~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~GvI~ 268 (268)
T TIGR00393 220 SEVRDFMT----LGPKTFKLDALLLEALEFLERRKITSLVVVDDH-NKVLGVLH 268 (268)
T ss_pred CcHHHhCC----CCCeEECCCCcHHHHHHHHHHcCCcEEEEECCC-CeEEEEEC
Confidence 67899998 558899999999999999999999999999984 79999985
No 175
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.13 E-value=3.8e-10 Score=110.60 Aligned_cols=123 Identities=14% Similarity=0.317 Sum_probs=107.6
Q ss_pred CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch
Q 018713 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW 272 (351)
Q Consensus 198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~ 272 (351)
..+...+++.+|+ ..++++.++.|+.+++..+.+. .+..++|+|+ ++++.|+++.++++..-
T Consensus 127 l~y~e~taG~~Mt----~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvsl~~Ll~a~-------- 193 (451)
T COG2239 127 LSYPEDTAGRIMT----TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE-KGKLLGVVSLRDLLTAE-------- 193 (451)
T ss_pred cCCChhhhhccce----eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC-ccceEEEeeHHHHhcCC--------
Confidence 4578889999999 5599999999999999999853 5789999999 48999999999986432
Q ss_pred hhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 273 l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.+.++++ +|. +.+++|..+++..++.+.|.+++.-.+||||+ +++++|+||..|++..+.+
T Consensus 194 ----~~~~i~~----im~-~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 194 ----PDELLKD----LME-DDVVSVLADDDQEEVARLFEKYDLLAVPVVDE-DNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred ----cHhHHHH----Hhc-ccceeecccCCHHHHHHHHHHhCCeecceECC-CCceeeeeeHHHHHHHHHH
Confidence 3456777 586 77999999999999999999999999999999 9999999999999988754
No 176
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=1.6e-09 Score=85.24 Aligned_cols=104 Identities=17% Similarity=0.308 Sum_probs=86.6
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
++.++++++++.+++..|.+++...+||+++++ +++|+++..+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~g~v~~~~l~~~------------------------- 48 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSG--------ELVGIITRKDLLRN------------------------- 48 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCC--------cEEEEEEHHHHHhc-------------------------
Confidence 467899999999999999999999999998753 79999998887620
Q ss_pred cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (351)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~ 215 (351)
....++.++|. .
T Consensus 49 ----------------------------------------------------------------~~~~~~~~~~~----~ 60 (106)
T cd04638 49 ----------------------------------------------------------------PEEEQLALLMT----R 60 (106)
T ss_pred ----------------------------------------------------------------cccchHHHHhc----C
Confidence 01124567776 4
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|..|+++
T Consensus 61 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 61 DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred CCceECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 5888999999999999999999999999985 48999999999864
No 177
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.10 E-value=1.6e-09 Score=86.85 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=88.4
Q ss_pred CcEEEcCCCCHHHHHHHHHHcC-ceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECN-ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~-i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
++.++++++++.+|++.|.+.+ +..+||+|+ + +++|+++..++...+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~--------~~~G~v~~~~l~~~~~~~~------------------- 53 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-G--------RPVGLIMREALMELLSTPY------------------- 53 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-C--------eeEEEEEHHHHHHHHhchh-------------------
Confidence 5667899999999999998877 899999997 4 8999999999874321110
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
.. ......++.++|.
T Consensus 54 ----------------------------------------------------~~---------~~~~~~~v~~~~~---- 68 (119)
T cd04598 54 ----------------------------------------------------GR---------ALYGKKPVSEVMD---- 68 (119)
T ss_pred ----------------------------------------------------hH---------HHHcCCcHHHhcC----
Confidence 00 1123457889998
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCC---EEEEEcCCCCCEEEEEeHHHHHH
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLR---NVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~---~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++..+.+++++.+++..|.+++.. ..+|+++ +|+++|+||..|+++
T Consensus 69 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 69 PDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 5599999999999999999988753 4467877 489999999999864
No 178
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.10 E-value=1.2e-09 Score=90.40 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=79.3
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCc-hh-h---hhccCcccccc---c-
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-WF-D---IIASQPISDLG---L- 286 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~-~l-~---~l~~~~v~~L~---~- 286 (351)
.+.++.+++++.+|++.|.+++++.+||+|++ |+++|+||..|+++++....... .. + ......+.++- +
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 80 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS 80 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence 37889999999999999998999999999984 89999999999998875432110 00 0 00011122210 0
Q ss_pred -CccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeC
Q 018713 287 -PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG 323 (351)
Q Consensus 287 -~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~ 323 (351)
..|. .+++++++++++.+|++.|.+++++++||+|+
T Consensus 81 ~~~~~-~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 81 YGGQE-CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred hcccC-CCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 0133 67889999999999999999999999999986
No 179
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.07 E-value=1.1e-09 Score=86.56 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=84.4
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCC--CCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccc
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPD--APSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~--~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (351)
.+..+++++++.++.+.|.+++...+||+|+. .+ +++|+|+..|+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~-------~~~G~v~~~dl~~~~---------------------- 53 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP-------RLVGYILRSQLVVAL---------------------- 53 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC-------EEEEEEeHHHHHHHH----------------------
Confidence 56789999999999999999999999999873 22 899999998876321
Q ss_pred cccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccC
Q 018713 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (351)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~ 213 (351)
. . +|.
T Consensus 54 -------------------------------------------------------------~--~---------~m~--- 58 (105)
T cd04591 54 -------------------------------------------------------------K--N---------YID--- 58 (105)
T ss_pred -------------------------------------------------------------H--H---------hcc---
Confidence 0 0 566
Q ss_pred CCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 214 ~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++.++++++++.++++.|.+++.+.+||+++ |+++|+||.+|+++
T Consensus 59 -~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~ 104 (105)
T cd04591 59 -PSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK 104 (105)
T ss_pred -CCCceECCCCcHHHHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence 45889999999999999999999999999963 69999999999875
No 180
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.02 E-value=7e-10 Score=97.49 Aligned_cols=127 Identities=12% Similarity=0.212 Sum_probs=110.4
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
.....|+|||.+. ...+++..+.++.+++..+....++++||+.++.+.+.|++.-+|+++++.+... .-
T Consensus 64 iadl~vrDiMIPR--SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~--------~F 133 (293)
T COG4535 64 IADLRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE--------PF 133 (293)
T ss_pred HHHhhHhhhcccH--HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc--------cc
Confidence 5567899999976 8999999999999999999999999999997766789999999999999866532 12
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.+.++ . +|.+.|+++..+.-.++.|..++-|-..|+|+ .|.+.|+||..||++.+-+
T Consensus 134 ~i~~l----L--RPav~VPESKrvd~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 134 DIKEL----L--RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred cHHHh----c--ccceecccchhHHHHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHhc
Confidence 35552 3 78899999999999999999999998889999 9999999999999988643
No 181
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.01 E-value=4.6e-09 Score=87.00 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=43.4
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHH
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWV 111 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~ 111 (351)
+++++.+++++.+|++.|.++++.++||+|+++ +++|+|+..|++.++
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g--------~l~Givt~~Dl~~~~ 49 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDD--------FLEGILTLGDIQRFL 49 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCC--------eEEEEEEHHHHHHHH
Confidence 578899999999999999999999999999754 899999999999755
No 182
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.96 E-value=1.1e-08 Score=95.70 Aligned_cols=166 Identities=14% Similarity=0.197 Sum_probs=126.6
Q ss_pred HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (351)
Q Consensus 40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~ 119 (351)
.|++++|+|+|. |++.+..++.+++..+.++.+.+.-..++||+..+ .++++|++...|+++++.+..+
T Consensus 196 DLe~~tV~DIMv-pR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~-------~DnIiGvlh~r~llr~l~e~~~--- 264 (423)
T COG4536 196 DLENLTVSDIMV-PRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD-------LDNIIGVLHVRDLLRLLNEKNE--- 264 (423)
T ss_pred ccccceeeeeec-cccceeeecCCCCHHHHHHHHhhCCCCceeeecCC-------hhHhhhhhhHHHHHHHhhccCc---
Confidence 467899999996 78999999999999999999999999999999876 3489999999998876654421
Q ss_pred hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 199 (351)
T Consensus 265 -------------------------------------------------------------------------------- 264 (423)
T COG4536 265 -------------------------------------------------------------------------------- 264 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
.+-.++++-. .+++.+++++++.+-+..|.+++-+-..|+|+. |.+.|+||.+||++.+..... +. ...
T Consensus 265 ---~~k~d~~~~a--~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY-G~i~GLVTLEDIlEEIVGdft-de----~d~ 333 (423)
T COG4536 265 ---FTKEDILRAA--DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY-GDIQGLVTLEDILEEIVGDFT-DE----HDT 333 (423)
T ss_pred ---ccHhHHHHHh--cCCeecCCCCcHHHHHHHHHHhcceEEEEEecc-CcEEeeeeHHHHHHHHhcccc-cc----Ccc
Confidence 1112333222 458899999999999999999999999999997 999999999999998865432 11 222
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHH
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRM 310 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m 310 (351)
...++ .-..+.-+.++.+.++.+.-+.|
T Consensus 334 ~~~ev---~~q~dgs~iidGs~~iRdlNr~l 361 (423)
T COG4536 334 LAKEV---IPQSDGSFIIDGSANVRDLNRAL 361 (423)
T ss_pred cchhh---cccCCCcEEEeCCCcHHHHHHhc
Confidence 33332 11124556678888888876544
No 183
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.91 E-value=6e-09 Score=72.78 Aligned_cols=56 Identities=23% Similarity=0.457 Sum_probs=51.9
Q ss_pred hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
|+++|+ +++.++++++++.++++.|.+++++++||+|++ |+++|+||.+|+++++.
T Consensus 1 v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMT----PPPITVSPDDSLEEALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSB----SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred CeECCc----CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhhh
Confidence 578999 569999999999999999999999999999984 89999999999999874
No 184
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.84 E-value=9.6e-09 Score=71.71 Aligned_cols=53 Identities=34% Similarity=0.543 Sum_probs=49.9
Q ss_pred ccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (351)
Q Consensus 288 ~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~ 342 (351)
+|. ++++++++++++.++++.|.+++.+++||+|+ +|+++|+||.+||++++.
T Consensus 4 ~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 4 IMT-PPPITVSPDDSLEEALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HSB-SSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHHHH
T ss_pred CCc-CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhhhh
Confidence 576 79999999999999999999999999999998 899999999999999874
No 185
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.82 E-value=3.6e-08 Score=86.87 Aligned_cols=166 Identities=15% Similarity=0.212 Sum_probs=126.2
Q ss_pred HHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHH
Q 018713 39 AAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA 118 (351)
Q Consensus 39 ~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~ 118 (351)
..++...|.++|- |++..++++.+.++.+++..+.+...+++||+.++ ..++.||+-..|++.++...
T Consensus 62 m~iadl~vrDiMI-PRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed-------kD~v~GIL~AKDLL~~~~~~---- 129 (293)
T COG4535 62 MDIADLRVRDIMI-PRSQMITLKRNQTLDECLDVIIESAHSRFPVISED-------KDHVEGILLAKDLLPFMRSD---- 129 (293)
T ss_pred HHHHHhhHhhhcc-cHHHheeccccCCHHHHHHHHHHhccccCCcccCC-------chhhhhhhhHHHHHHHhcCC----
Confidence 3567788999996 78999999999999999999999999999999876 34899999888888653211
Q ss_pred hhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcC
Q 018713 119 AAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEE 198 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 198 (351)
T Consensus 130 -------------------------------------------------------------------------------- 129 (293)
T COG4535 130 -------------------------------------------------------------------------------- 129 (293)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278 (351)
Q Consensus 199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~ 278 (351)
.....+++++. |.+.|++...+...++.+..++.|-+.|+|+. |.+-|.||.+|++..+.... .++++.-..
T Consensus 130 -~~~F~i~~lLR-----Pav~VPESKrvd~lLkeFR~~RnHMAIViDEf-GgVsGLVTIEDiLEqIVGdI-EDE~Deee~ 201 (293)
T COG4535 130 -AEPFDIKELLR-----PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEF-GGVSGLVTIEDILEQIVGDI-EDEYDEEED 201 (293)
T ss_pred -cccccHHHhcc-----cceecccchhHHHHHHHHHhhcCceEEEEecc-CCeeeeEEHHHHHHHHhccc-ccccchhhh
Confidence 11134555554 57889999999999999999999999999996 88999999999999987554 233322222
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHH
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRM 310 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m 310 (351)
..+..+ .+.-+.|..-+++.+--+.|
T Consensus 202 ~dI~~l------s~~~~~VrALT~IedFNe~F 227 (293)
T COG4535 202 ADIRQL------SRHTWRVRALTEIEDFNEAF 227 (293)
T ss_pred hhhHhh------cCCceEEEecccHHHHHHHh
Confidence 224442 24556677777776665554
No 186
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.79 E-value=4.2e-08 Score=96.35 Aligned_cols=117 Identities=19% Similarity=0.290 Sum_probs=100.7
Q ss_pred cccCCCCCCCCcEEEcCCCCHHHHHHHHHH-----cCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713 46 VLSFPNVPGGRVIEIMADTTIPDAVKILSE-----CNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (351)
Q Consensus 46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~-----~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~ 120 (351)
+..+|+ ..++++.+++|+.+|+..+.+ ..+..+.|+|.+. +++|+++..+++.
T Consensus 134 aG~~Mt---~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~--------~L~Gvvsl~~Ll~----------- 191 (451)
T COG2239 134 AGRIMT---TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKG--------KLLGVVSLRDLLT----------- 191 (451)
T ss_pred hhccce---eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCcc--------ceEEEeeHHHHhc-----------
Confidence 445554 799999999999999999984 4578889999864 7999999988881
Q ss_pred hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~ 200 (351)
..
T Consensus 192 ------------------------------------------------------------------------------a~ 193 (451)
T COG2239 192 ------------------------------------------------------------------------------AE 193 (451)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 13
Q ss_pred CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
+..+++++|. +.+.++.+++...++.+.+.+++.-.+||+|++ ++++|+||..|++..+.+.
T Consensus 194 ~~~~i~~im~----~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 194 PDELLKDLME----DDVVSVLADDDQEEVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred cHhHHHHHhc----ccceeecccCCHHHHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHHHHH
Confidence 4578899999 559999999999999999999999999999994 8999999999999988654
No 187
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.71 E-value=3.1e-07 Score=88.60 Aligned_cols=109 Identities=18% Similarity=0.349 Sum_probs=91.7
Q ss_pred cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceE
Q 018713 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (351)
Q Consensus 217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~ 296 (351)
.....++.+..++++.|...+...+.|+|++ +++.|+++.+++..++... ..+.+ .+. ....+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----------~~~~~----~~~-~~~~~ 314 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-----------QGLQD----VLI-DDIYT 314 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-----------Cchhh----hhc-cCCce
Confidence 3456677889999999999999999999984 8999999999998776432 23444 343 66778
Q ss_pred EcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 297 V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
+++++++.+++..|.+++.. +||+|+ +|+++|+||..+++..+.+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 315 VDAGTLLRETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred ECCCCcHHHHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHHHhh
Confidence 99999999999999999988 999998 89999999999999988654
No 188
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.55 E-value=1.8e-07 Score=88.41 Aligned_cols=109 Identities=23% Similarity=0.261 Sum_probs=93.8
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE 293 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~ 293 (351)
++++++|+.++.++++....+++..+||.+++ +++++|+||.+|+ .++.+ ....+++ +|+ ..
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~~~----------~~~~~~~----vmt-~~ 180 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFLED----------NSLLVSD----VMT-KN 180 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhhhc----------ccchhhh----hcc-cc
Confidence 37789999999999999999999999999753 4689999999998 44422 3456777 586 56
Q ss_pred ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341 (351)
Q Consensus 294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l 341 (351)
.++.+...++.++-++|.+++...+||||+ +|+++.+|+++|+++.-
T Consensus 181 ~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 181 PVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKNR 227 (503)
T ss_pred cccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhhc
Confidence 688999999999999999999999999999 99999999999998753
No 189
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=1.2e-06 Score=85.71 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=96.6
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~ 282 (351)
.++.++|...+ ...+...++.+..+++..|...+.+.++|+|++ +++.|+|+..++.+..... ..+.
T Consensus 274 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----------~~~~ 340 (400)
T PRK10070 274 FSAKDIARRTP-NGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQQ-----------QGLD 340 (400)
T ss_pred cchhhhhhcCc-ccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhcC-----------Cchh
Confidence 46677775220 111234467789999999999999999999984 8999999999997765322 1344
Q ss_pred ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCccc
Q 018713 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 346 (351)
Q Consensus 283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~~ 346 (351)
+ .+. ....++.+++++.+++..+.+.... +||||+ +|+++|+|+..+++..+.....
T Consensus 341 ~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~~~~~ 397 (400)
T PRK10070 341 A----ALI-DAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALDREGV 397 (400)
T ss_pred h----hhc-cCCceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHHhcCC
Confidence 4 233 5678999999999999999987766 999998 8999999999999999876543
No 190
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.44 E-value=5.6e-06 Score=79.97 Aligned_cols=107 Identities=17% Similarity=0.243 Sum_probs=87.1
Q ss_pred EEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccccc
Q 018713 58 IEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTV 137 (351)
Q Consensus 58 i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
....++.+..++++.|..++...+.|+|.+. ++.|.++..++..+.-
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~------------------------- 299 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDRQN--------KLVGVVDVESIKQARK------------------------- 299 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcCCC--------CEEEEEeHHHHHHHhh-------------------------
Confidence 4567788999999999999999999998764 8999999877663310
Q ss_pred cccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCc
Q 018713 138 GALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPF 217 (351)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~ 217 (351)
....+.+.+. ...
T Consensus 300 ---------------------------------------------------------------~~~~~~~~~~----~~~ 312 (363)
T TIGR01186 300 ---------------------------------------------------------------KAQGLQDVLI----DDI 312 (363)
T ss_pred ---------------------------------------------------------------cCCchhhhhc----cCC
Confidence 0123455565 347
Q ss_pred EEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 218 ~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
.++.+++++.+++..|.+++.. +||+|++ |+++|+||+.++++.+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 313 YTVDAGTLLRETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred ceECCCCcHHHHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHHh
Confidence 7899999999999999999988 9999984 899999999999998854
No 191
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.30 E-value=1.6e-06 Score=86.12 Aligned_cols=133 Identities=17% Similarity=0.285 Sum_probs=104.1
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCC----CCEEEEEeHHHHHHHhhcCCCC-------
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT----PDIKNYITQSAVVQGLEGCKGR------- 270 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~----g~liGiIt~~dil~~l~~~~~~------- 270 (351)
+.+++|+|. +|+++++.-..+..+.+.+.+.+++.+||+|+.. +++.|+|-++.++..+....-.
T Consensus 581 ~L~a~ev~~----~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~ 656 (762)
T KOG0474|consen 581 NLTAGEVMS----KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTF 656 (762)
T ss_pred hhhHhhhcc----CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcccc
Confidence 457899999 6799999999999999999999999999998631 4789999999998776432100
Q ss_pred ch-------hhhh--ccCccccccc------------CccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEE
Q 018713 271 DW-------FDII--ASQPISDLGL------------PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIV 329 (351)
Q Consensus 271 ~~-------l~~l--~~~~v~~L~~------------~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~li 329 (351)
++ ++++ ...+++|+.+ |+|+ ..+++|.+++++..++.+|..-+.+++.||.. ..+.+
T Consensus 657 ~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n-~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-~~~~~ 734 (762)
T KOG0474|consen 657 DLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMN-PSPYTVPETMSLAKAFILFRQLGLRHLLVVPK-TNRVV 734 (762)
T ss_pred CcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccC-CCCcccCcccchHHHHHHHHHhcceeEEEecC-CCcee
Confidence 00 0111 1223333321 2676 88899999999999999999999999999998 88889
Q ss_pred EEEeHHHHHHH
Q 018713 330 GNVSIRDIRHL 340 (351)
Q Consensus 330 GiIt~~DIl~~ 340 (351)
|++|++|++..
T Consensus 735 gilTR~D~~~~ 745 (762)
T KOG0474|consen 735 GILTRKDLARY 745 (762)
T ss_pred EEEehhhhhhH
Confidence 99999999854
No 192
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=1.2e-05 Score=78.74 Aligned_cols=107 Identities=12% Similarity=0.172 Sum_probs=86.1
Q ss_pred EEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccccccc
Q 018713 59 EIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVG 138 (351)
Q Consensus 59 ~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
...++.+..+|+..|..++..++.|+|+++ +++|+++..++..+.-
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~-------------------------- 334 (400)
T PRK10070 289 RKTPGFGPRSALKLLQDEDREYGYVIERGN--------KFVGAVSIDSLKTALT-------------------------- 334 (400)
T ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEcCCC--------cEEEEEeHHHHHhhhh--------------------------
Confidence 355777899999999999999999999864 8999999888763210
Q ss_pred ccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCcE
Q 018713 139 ALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFL 218 (351)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~~ 218 (351)
....+.+.+. ....
T Consensus 335 --------------------------------------------------------------~~~~~~~~~~----~~~~ 348 (400)
T PRK10070 335 --------------------------------------------------------------QQQGLDAALI----DAPL 348 (400)
T ss_pred --------------------------------------------------------------cCCchhhhhc----cCCc
Confidence 0123455555 3477
Q ss_pred EecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 219 PVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 219 ~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
++.+++++.+++..+.+.... +||+|++ |+++|+|+..++++.+...
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 349 AVDAQTPLSELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALDRE 395 (400)
T ss_pred eeCCCCCHHHHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHHhc
Confidence 899999999999999987666 9999984 8999999999999998543
No 193
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.23 E-value=5e-06 Score=82.64 Aligned_cols=186 Identities=13% Similarity=0.121 Sum_probs=115.8
Q ss_pred HHhhhccCCCChHHHHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeE
Q 018713 22 AIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGI 101 (351)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGi 101 (351)
.+..-+..|.-..+. ...+.++.+.++|+ .+++++...+.+....+++...+...+||+|+..+.. ..++.|+
T Consensus 561 ~~i~LkgvP~Le~~p-e~~mr~L~a~ev~~---~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~---~~~l~Gl 633 (762)
T KOG0474|consen 561 IIIQLKGVPFLEWEP-EPYMRNLTAGEVMS---KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNE---AGRLHGL 633 (762)
T ss_pred HhhhccCCccccCCC-chHhhhhhHhhhcc---CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCcc---chhhhHH
Confidence 333344555433333 34567888999997 6999999999999999999999999999999754311 1368888
Q ss_pred eeHHHHHHHHHHhhHHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCch
Q 018713 102 VDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPT 181 (351)
Q Consensus 102 v~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (351)
+-.+.++.-+...--..+.+...+... ...-..-.+..+.|
T Consensus 634 ILRshl~vlL~~~~f~~~~~~~~~~~~--------~~~~~~~d~a~r~~------------------------------- 674 (762)
T KOG0474|consen 634 ILRSHLLVLLKKRVFVEESRSTFDLPV--------RRKFTFRDFAKREP------------------------------- 674 (762)
T ss_pred HHHHHHHHHHHhhhhhccCccccCcch--------hhcCCHHHhhhcCC-------------------------------
Confidence 877777744433221111000000000 00000000000000
Q ss_pred hhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH
Q 018713 182 AADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (351)
Q Consensus 182 ~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil 261 (351)
..+|+. +.+.+..-......+|++. +.++.+++++..+..++..-+.+++.|++.. ++.+|++|++|++
T Consensus 675 ----~i~dv~--lt~~e~~~yvDl~p~~n~s----PytV~~~mSl~k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~ 743 (762)
T KOG0474|consen 675 ----SIEDVH--LTSEEMEMYVDLHPFMNPS----PYTVPETMSLAKAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLA 743 (762)
T ss_pred ----chhhhh--cchHhHhhccccccccCCC----CcccCcccchHHHHHHHHHhcceeEEEecCC-CceeEEEehhhhh
Confidence 001110 0111112234567788855 8999999999999999999999999999884 6789999999997
Q ss_pred HHh
Q 018713 262 QGL 264 (351)
Q Consensus 262 ~~l 264 (351)
++-
T Consensus 744 ~~~ 746 (762)
T KOG0474|consen 744 RYR 746 (762)
T ss_pred hHH
Confidence 654
No 194
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.21 E-value=3.7e-06 Score=79.76 Aligned_cols=113 Identities=13% Similarity=0.185 Sum_probs=94.8
Q ss_pred CCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccc
Q 018713 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (351)
Q Consensus 54 ~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (351)
.++++.++|+.++.++++....++...+||...... ..+++|+|+..||-+.
T Consensus 115 ~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~-----~~KLvG~vtsrdi~f~----------------------- 166 (503)
T KOG2550|consen 115 INNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKR-----GSKLVGIITSRDIQFL----------------------- 166 (503)
T ss_pred ccCCcccCCcccchhhhhhcccccccccccccCCcc-----cceeEEEEehhhhhhh-----------------------
Confidence 467789999999999999999999999999964321 3589999998775521
Q ss_pred cccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccC
Q 018713 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (351)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~ 213 (351)
......+.++|++.
T Consensus 167 -----------------------------------------------------------------~~~~~~~~~vmt~~- 180 (503)
T KOG2550|consen 167 -----------------------------------------------------------------EDNSLLVSDVMTKN- 180 (503)
T ss_pred -----------------------------------------------------------------hcccchhhhhcccc-
Confidence 12346789999954
Q ss_pred CCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (351)
Q Consensus 214 ~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l 264 (351)
.++.+.+.++.++-+++.+++...+||+|+ +|+++.+|+++|+.+..
T Consensus 181 ---~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 181 ---PVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKNR 227 (503)
T ss_pred ---cccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhhc
Confidence 688889999999999999999999999998 48999999999997764
No 195
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.91 E-value=0.00011 Score=73.45 Aligned_cols=135 Identities=10% Similarity=0.175 Sum_probs=93.6
Q ss_pred hHhhhhccCCC-CcEEecCC-CCHHHHHHHHHhCCCCEEEEE-cCCCCCEEEEEeHHHHHHHhhcCCCCchhh---h-hc
Q 018713 205 VRSIIKSYRWA-PFLPVATD-DSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGCKGRDWFD---I-IA 277 (351)
Q Consensus 205 V~dim~~~~~~-~~~~v~~~-~sl~ea~~~m~~~~~~~vpVv-d~~~g~liGiIt~~dil~~l~~~~~~~~l~---~-l~ 277 (351)
-.++|.+.+.+ +..++..+ +++.+...+|....++.+||+ ++++.+++|++.++|+...+.+......+. + ..
T Consensus 545 ~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f 624 (696)
T KOG0475|consen 545 AIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYF 624 (696)
T ss_pred hhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccccc
Confidence 34555543222 35556554 799999999999988888887 555678999999999987765322111100 0 01
Q ss_pred cCccc--------ccccC-ccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713 278 SQPIS--------DLGLP-FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (351)
Q Consensus 278 ~~~v~--------~L~~~-~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~ 342 (351)
..+.. .+++. +|. ..+.++...++...+++++++-+++.+.|.. +|++.|+||++|++...+
T Consensus 625 ~~~~~~~~~~~~~~~~lk~il~-~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~r 695 (696)
T KOG0475|consen 625 NDPSPSAVAGIPSRLDLKDILD-MTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHTR 695 (696)
T ss_pred CCCCccccCCCCCCcCceeecc-CCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhhc
Confidence 11111 11111 565 6788999999999999999999998877665 599999999999998754
No 196
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.91 E-value=3.1e-05 Score=61.94 Aligned_cols=55 Identities=18% Similarity=0.334 Sum_probs=49.6
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++.++|. .++.++.+++++.++++.|.+++.+.+||+|++ |+++|+|+..|+.+
T Consensus 58 ~~v~dim~----~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVIN----RKPVTARPNDPLREALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcC----CCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 57999998 558899999999999999999999999999984 79999999999853
No 197
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.83 E-value=6.8e-05 Score=48.83 Aligned_cols=47 Identities=32% Similarity=0.579 Sum_probs=42.7
Q ss_pred ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341 (351)
Q Consensus 294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l 341 (351)
+.++.+++++.++++.|.+++.+.+||+++ +++++|+++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence 467899999999999999999999999998 78999999999998765
No 198
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.81 E-value=4.3e-05 Score=61.08 Aligned_cols=55 Identities=24% Similarity=0.458 Sum_probs=48.7
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
.++.+ +|. +++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+|+..||..
T Consensus 58 ~~v~d----im~-~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRD----VIN-RKPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHH----hcC-CCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhhc
Confidence 45677 475 78889999999999999999999999999998 899999999999863
No 199
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.75 E-value=0.0001 Score=47.98 Aligned_cols=47 Identities=19% Similarity=0.445 Sum_probs=42.3
Q ss_pred cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (351)
Q Consensus 217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l 264 (351)
+.++.+++++.++++.|.+++.+.+||++++ ++++|+++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHhh
Confidence 5678999999999999999999999999984 7999999999997764
No 200
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00023 Score=66.30 Aligned_cols=131 Identities=16% Similarity=0.244 Sum_probs=99.4
Q ss_pred hhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHH
Q 018713 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAV 260 (351)
Q Consensus 181 ~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~di 260 (351)
.|++++.++|.+.+.. ..-.+..++|... .+...-.+...-..++..+.....+.+.+++. .++.+|+++..+.
T Consensus 255 ~PAndYV~~Fv~~v~~---~~VltA~~IM~~~--~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~ 328 (386)
T COG4175 255 NPANDYVRDFVRNVDR---SRVLTAKDIMRRP--DLLIRKTPGDGPRVALKLLRDEGREYGYAVDR-GNKFVGVVSIDSL 328 (386)
T ss_pred CccHHHHHHHHhcCCh---hheeeHHHhhccc--ccccccccccccchhhhhhhhccchhhHHHhc-cCceeeEEeccch
Confidence 4667778888776543 4446789999842 33333344445567888888888888888886 4789999998887
Q ss_pred HHHhhcCCCCchhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 018713 261 VQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 340 (351)
Q Consensus 261 l~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~ 340 (351)
.... +. .++..+..++++.+.+....+..+. +||+|+ +++++|+|+...++.+
T Consensus 329 ~~~~------------------------~~-~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde-~~r~vG~i~~~~vl~a 381 (386)
T COG4175 329 VKAA------------------------LI-DDVLTVDADTPLSEILARIRQAPCP-VAVVDE-DGRYVGIISRGELLEA 381 (386)
T ss_pred hccc------------------------cc-ccccccCccchHHHHHHHHhcCCCc-eeEEcC-CCcEEEEecHHHHHHH
Confidence 5441 22 5777899999999999998887775 899999 9999999999999999
Q ss_pred hcCc
Q 018713 341 LLKP 344 (351)
Q Consensus 341 l~~~ 344 (351)
+...
T Consensus 382 L~~~ 385 (386)
T COG4175 382 LARI 385 (386)
T ss_pred HhcC
Confidence 8653
No 201
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.0013 Score=65.90 Aligned_cols=137 Identities=18% Similarity=0.268 Sum_probs=94.9
Q ss_pred CcEEEcCC-CCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 56 RVIEIMAD-TTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 56 ~~i~v~~~-~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
.++.+..+ +|+.|...+|.+.+...+||+-+++ ..+++|+|+..++...+....+..+.. . +.+
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~------sq~lvGfv~rr~l~~~i~~ar~~q~~~--~-~~~------ 621 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSED------SQRLVGFVLRRNLFLAILNARKIQSFI--V-TTS------ 621 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccc------cceeEEEEchHHHHHHHhhhccccccc--e-ecc------
Confidence 46666666 9999999999999999999996544 348999999999986655432221100 0 000
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
+....|. + ... .........+++|...
T Consensus 622 ----------~~f~~~~-------------------------------------~---~~~-~~~~~~~~lk~il~~t-- 648 (696)
T KOG0475|consen 622 ----------IYFNDPS-------------------------------------P---SAV-AGIPSRLDLKDILDMT-- 648 (696)
T ss_pred ----------cccCCCC-------------------------------------c---ccc-CCCCCCcCceeeccCC--
Confidence 0000000 0 000 0223345667888844
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l 264 (351)
+.++...++..-+++++.+-+++...|..+ |++.|+||.+|+++..
T Consensus 649 --p~tv~d~tp~~~v~~~F~~lg~~~~~v~~~--G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 649 --PFTVTDLTPMETVVDLFRKLGLRQILVTKN--GILLGIITKKDCLRHT 694 (696)
T ss_pred --cccccccCcHHHHHHHHHhhCceEEEEccC--CeeEeeeehHHHHHhh
Confidence 889999999999999999999999988864 6999999999998765
No 202
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.91 E-value=0.0059 Score=59.47 Aligned_cols=111 Identities=19% Similarity=0.165 Sum_probs=76.0
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
..-.++.++|.+. ......+.+ .+++. ++...++|+|. |+++..+......... ..
T Consensus 271 ~~~l~a~~~m~~~----~~~~~~~~~--~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~---------~~ 326 (382)
T TIGR03415 271 LNVLTARSLMRPL----TDLEHVDGG--WCVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAA---------EQ 326 (382)
T ss_pred ccceeHHHHhccc----ccccccCcc--hhhhh---cccceeEeecc------ceecccchHhHhhccc---------cc
Confidence 3445788999622 222233322 44433 67888999874 7888777655443211 12
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.+.++ . ....++++++++.+++..+.+.+.. ++|+|+ |+++|+|+..+++..+..
T Consensus 327 ~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 327 EVESL-----E-AAPTVINPDTLMRDVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred chhhh-----c-ccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHHhc
Confidence 33332 1 4677899999999999998887765 889986 999999999999998754
No 203
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.11 Score=53.70 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=51.6
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CCCEEEEEeHHHHHHHhhc
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~-~g~liGiIt~~dil~~l~~ 266 (351)
+..|+++|. +++..+..+++..|..+.+....++.+|+||+. +.-++|.|.++.+...+..
T Consensus 587 ~v~VE~iMV----~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 587 TVKVEHIMV----TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred EEEeeeecc----ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 457899999 559999999999999999987779999999863 3458999999999877654
No 204
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.65 E-value=0.36 Score=50.01 Aligned_cols=63 Identities=19% Similarity=0.116 Sum_probs=52.4
Q ss_pred ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHH
Q 018713 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLE 113 (351)
Q Consensus 42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~ 113 (351)
..+.|.++|. +++..+..++|..|.-+.+....++++|++|+.+. --++|.|....+...+-.
T Consensus 586 h~v~VE~iMV---~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~es------miLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 586 HTVKVEHIMV---TDVKYITKDTTYRELREALQTTTLRSFPLVESKES------MILLGSVARRYLTALLQR 648 (931)
T ss_pred eEEEeeeecc---ccceeeeccCcHHHHHHHHHhCccceeccccCccc------ceeeehhHHHHHHHHHHh
Confidence 4566788886 89999999999999999998888999999987652 259999998888866554
No 205
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=93.82 E-value=0.099 Score=52.71 Aligned_cols=138 Identities=9% Similarity=0.098 Sum_probs=92.4
Q ss_pred HHHHHhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHH-HHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 189 DFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSML-SVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 189 d~~~~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~-ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
+....+.....+....++++|++- ..+..+..+..+. +......+++++++||.+.+....+|.+=....++++...
T Consensus 190 ~e~~ii~g~l~l~ek~~~evmtpi--~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~ 267 (498)
T KOG2118|consen 190 DELTIITGALELTEKLVGEVMTPI--EDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE 267 (498)
T ss_pred hhhhHhhhhHHHHHHHHHHhccch--hhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc
Confidence 333333333345567889999976 7788888888877 5555666889999999987544445553334444444221
Q ss_pred CCCchhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713 268 KGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (351)
Q Consensus 268 ~~~~~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~ 342 (351)
. .+...++.+ .+. .++..++.++++.+.++.|++.+.|.+.|.. ...-+++++..|+ ....
T Consensus 268 ~------~~~~~~v~~----~~~-~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~--~~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 268 V------PLEPLPVSE----SAL-LRLPLVPENMPLLDLLNEFQKGKSHMAVVRN--GHVDIFVLTLEDL-EEVV 328 (498)
T ss_pred c------ccccccchh----hhc-cccccCCCcccHHHHHHHHhhhhceeEEEec--CCcceeeEeccch-hhhc
Confidence 1 123445555 343 7888999999999999999887777554444 4778999999997 4433
No 206
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.68 E-value=0.28 Score=46.19 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=40.7
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
.++.++.+++++.+.+....+... .++|+|+ +++++|+++...++.++.
T Consensus 335 ~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde-~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 335 DDVLTVDADTPLSEILARIRQAPC-PVAVVDE-DGRYVGIISRGELLEALA 383 (386)
T ss_pred ccccccCccchHHHHHHHHhcCCC-ceeEEcC-CCcEEEEecHHHHHHHHh
Confidence 347788899999998888876554 5789988 489999999999998875
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.12 E-value=0.37 Score=44.09 Aligned_cols=88 Identities=16% Similarity=0.085 Sum_probs=57.4
Q ss_pred hhhhhhhhcccccchhhHHHHHhhhccCCCCh--HHHHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCce
Q 018713 2 AQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSL--QETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNIL 79 (351)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~ 79 (351)
+.|++....|+ ..|.+.+.......... ............. .- --.+.....-.+++..+...+..
T Consensus 218 ~~P~~il~~Pa----n~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~ls~~~~~~~~ 285 (309)
T COG1125 218 DTPDEILANPA----NDFVEDFFGESERGLRLLSLVSVADAVRRGEP--AD------GEPLLEGFVDRDALSDFLARGRS 285 (309)
T ss_pred CCHHHHHhCcc----HHHHHHHhccccccccccchhhHHHhhccccc--cc------CCccccchhhHHHHHHHHhcCCc
Confidence 57899999999 88888876654322211 1111122111111 00 01234445666799999999999
Q ss_pred ecceecCCCCCCCccccceeeEeeHHHHHH
Q 018713 80 SAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (351)
Q Consensus 80 ~~pVvd~~~~~~~~~~~~~vGiv~~~di~~ 109 (351)
.+||+|+++ +++|.++..+++.
T Consensus 286 ~~~Vvd~~g--------~~~G~vt~~~l~~ 307 (309)
T COG1125 286 VLPVVDEDG--------RPLGTVTRADLLD 307 (309)
T ss_pred eeEEECCCC--------cEeeEEEHHHHhh
Confidence 999999875 8999999999884
No 208
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.61 E-value=0.73 Score=42.25 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=43.1
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~ 263 (351)
.....+.+.+.......--.+.......+++..+...+...+||+|++ |+++|.||+.+++..
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~~ 308 (309)
T COG1125 246 LSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDED-GRPLGTVTRADLLDE 308 (309)
T ss_pred cchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhhh
Confidence 345667777764310001123334455567888888899999999995 999999999998754
No 209
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=86.03 E-value=1.8 Score=42.32 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=40.2
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
...++++++++.+++..+...+.. ++|+|+ |+++|+|+..+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHALL 380 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHHh
Confidence 477899999999999998876654 788874 69999999999998874
No 210
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=82.33 E-value=2.2 Score=43.17 Aligned_cols=130 Identities=13% Similarity=0.093 Sum_probs=92.5
Q ss_pred HHHhccCccccCCCCCCCCcEEEcCCCCHH-HHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhH
Q 018713 38 TAAFARIPVLSFPNVPGGRVIEIMADTTIP-DAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAE 116 (351)
Q Consensus 38 ~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~-~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~ 116 (351)
...+..+.+.++|. |...+..++.+..+. +......+++.+++||.+.+.. +.+|.+-....+
T Consensus 198 ~l~l~ek~~~evmt-pi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~-------~~i~~~L~~~~~-------- 261 (498)
T KOG2118|consen 198 ALELTEKLVGEVMT-PIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPK-------NKIGGLLVMNLL-------- 261 (498)
T ss_pred hHHHHHHHHHHhcc-chhhheeeccccccchHHHhhHhhcCcceeeeccCccc-------chhhHHHHhhhh--------
Confidence 45677788899997 778888899999997 6777778999999999987632 444432111111
Q ss_pred HHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhh
Q 018713 117 LAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQ 196 (351)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 196 (351)
..+..
T Consensus 262 ---------------------------------------------------------------------------~~~~~ 266 (498)
T KOG2118|consen 262 ---------------------------------------------------------------------------RLLQV 266 (498)
T ss_pred ---------------------------------------------------------------------------hhhcc
Confidence 01100
Q ss_pred cCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 197 ~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
...+...++.+.+. .+...++.++++.+.++.+.+.+.|.+.|... ..-+++++..++ ....
T Consensus 267 ~~~~~~~~v~~~~~----~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~--~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 267 EVPLEPLPVSESAL----LRLPLVPENMPLLDLLNEFQKGKSHMAVVRNG--HVDIFVLTLEDL-EEVV 328 (498)
T ss_pred ccccccccchhhhc----cccccCCCcccHHHHHHHHhhhhceeEEEecC--CcceeeEeccch-hhhc
Confidence 01345567777777 55888999999999999999888888777774 357899999987 5443
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=58.94 E-value=35 Score=35.67 Aligned_cols=100 Identities=12% Similarity=0.162 Sum_probs=58.5
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC---CCCchhhhhccCcccccccCccCCCCceEEcCCCc
Q 018713 226 MLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC---KGRDWFDIIASQPISDLGLPFMSSDEVITIQSNEL 302 (351)
Q Consensus 226 l~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~---~~~~~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~ 302 (351)
+....+.+...+ ..+++.|. +|.++.+....++++.+... .+..|-+....+..- |. .+....++.|...+=
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~-~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnai--g~-al~~~~pv~v~g~EH 135 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDE-TGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNAL--SL-AAISGQPVKTMGDQH 135 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcC-CceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHH--HH-HHhcCCceEEecHHH
Confidence 444455555444 67888888 49999999988887765431 122222221111111 11 111245555555543
Q ss_pred HHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeH
Q 018713 303 ILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSI 334 (351)
Q Consensus 303 l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~ 334 (351)
..+ .+....+...||.|. +|+++|+|+.
T Consensus 136 ~~~---~~~~~~c~aaPI~d~-~G~liGvl~l 163 (638)
T PRK11388 136 FKQ---ALHNWAFCATPVFDS-KGRLTGTIAL 163 (638)
T ss_pred HHH---hccCceEEeeEEEcC-CCCEEEEEEE
Confidence 333 344556889999998 8999999963
No 212
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=36.26 E-value=61 Score=23.83 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=12.6
Q ss_pred eeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713 317 GIPVVEGQQKKIVGNVSIRDIRHLLL 342 (351)
Q Consensus 317 ~lpVvd~~~g~liGiIt~~DIl~~l~ 342 (351)
.+-|+++ +|+.+|+++..+.++.-.
T Consensus 14 ~VrlI~~-~g~~lGv~~~~eAl~~A~ 38 (76)
T PF05198_consen 14 EVRLIDE-DGEQLGVMSLREALRLAK 38 (76)
T ss_dssp EEEEE-T-TS-EEEEEEHHHHHHHHH
T ss_pred EEEEECC-CCcEeceEEHHHHHHHHH
Confidence 3445555 566666666666555443
No 213
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=28.51 E-value=2e+02 Score=21.10 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713 63 DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (351)
Q Consensus 63 ~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~ 115 (351)
+.|...|.+....+.+ .+||+.-++++.+. -+|.+.|+..|+=...
T Consensus 27 ~lt~~~a~rk~~~g~l-plPv~rl~~SqKs~------~~V~v~dLA~yiD~~~ 72 (76)
T PF11112_consen 27 HLTPKTAKRKANAGEL-PLPVFRLDDSQKSP------KFVHVQDLAAYIDKRR 72 (76)
T ss_pred cCCHHHHHHHHHCCCC-CCceeecCCcccCC------ceeeHHHHHHHHHHHH
Confidence 3467778888888777 89999765443333 2678899888775543
No 214
>PF14044 NETI: NETI protein
Probab=22.06 E-value=1e+02 Score=21.33 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=18.8
Q ss_pred EEcCCCCHHHHHHHHHHcCcee
Q 018713 59 EIMADTTIPDAVKILSECNILS 80 (351)
Q Consensus 59 ~v~~~~sl~~al~~m~~~~i~~ 80 (351)
.|.++.||.++|+.|.+.++.-
T Consensus 3 eV~enETI~~CL~RM~~eGY~P 24 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGYMP 24 (57)
T ss_pred eccCCCcHHHHHHHHHHcCCCc
Confidence 4778999999999999998643
No 215
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=20.98 E-value=97 Score=24.30 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=13.2
Q ss_pred CeeEEEeCCCCeEEEEEeH
Q 018713 316 GGIPVVEGQQKKIVGNVSI 334 (351)
Q Consensus 316 ~~lpVvd~~~g~liGiIt~ 334 (351)
-..||.|. +|+++|+|+.
T Consensus 92 ~~~PV~d~-~g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVYDS-DGKVIGVVSV 109 (116)
T ss_dssp EEEEEE-T-TS-EEEEEEE
T ss_pred EEEeeECC-CCcEEEEEEE
Confidence 35899987 8999999974
No 216
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=20.92 E-value=1.3e+02 Score=30.63 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 301 ~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
..+..+.....+.+-.-++|+.+ +++.|+|-++|+++
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK 449 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcc
Confidence 45777788888888888888876 99999999999874
Done!