Query 018713
Match_columns 351
No_of_seqs 249 out of 3297
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 04:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ddj_A CBS domain-containing p 99.9 1.9E-24 6.5E-29 200.8 14.1 196 42-344 91-286 (296)
2 3kh5_A Protein MJ1225; AMPK, A 99.9 4E-23 1.4E-27 189.5 21.6 203 45-344 4-206 (280)
3 3t4n_C Nuclear protein SNF4; C 99.9 1.8E-23 6.3E-28 196.5 17.8 222 36-344 22-249 (323)
4 3ddj_A CBS domain-containing p 99.9 1.3E-23 4.6E-28 195.0 16.6 198 40-342 16-213 (296)
5 3kh5_A Protein MJ1225; AMPK, A 99.9 1.2E-23 4.1E-28 193.1 15.2 192 43-341 83-279 (280)
6 2v8q_E 5'-AMP-activated protei 99.9 5.5E-23 1.9E-27 193.9 17.6 229 33-344 24-252 (330)
7 3t4n_C Nuclear protein SNF4; C 99.9 5.2E-23 1.8E-27 193.4 17.1 191 55-344 122-321 (323)
8 2yzq_A Putative uncharacterize 99.9 3.6E-23 1.2E-27 190.4 15.0 199 41-344 57-280 (282)
9 2qrd_G Protein C1556.08C; AMPK 99.9 7.1E-22 2.4E-26 186.5 21.0 225 36-344 14-244 (334)
10 2yzq_A Putative uncharacterize 99.9 3.1E-22 1.1E-26 184.1 10.4 177 45-338 2-179 (282)
11 2qrd_G Protein C1556.08C; AMPK 99.9 4.3E-21 1.5E-25 181.1 17.6 190 57-344 119-316 (334)
12 2v8q_E 5'-AMP-activated protei 99.9 3.2E-21 1.1E-25 181.8 16.1 198 46-344 120-324 (330)
13 4esy_A CBS domain containing m 99.8 8.3E-20 2.9E-24 156.1 9.2 133 201-345 16-164 (170)
14 4esy_A CBS domain containing m 99.8 1.7E-19 5.8E-24 154.2 11.1 154 36-267 10-163 (170)
15 3hf7_A Uncharacterized CBS-dom 99.8 7.3E-19 2.5E-23 143.6 12.8 126 203-343 2-127 (130)
16 3k6e_A CBS domain protein; str 99.8 1.1E-18 3.9E-23 147.4 12.5 127 203-342 15-141 (156)
17 3lv9_A Putative transporter; C 99.8 3.5E-18 1.2E-22 142.3 15.2 127 199-343 19-145 (148)
18 3i8n_A Uncharacterized protein 99.8 8.7E-19 3E-23 142.9 11.0 127 200-343 3-129 (130)
19 3kpb_A Uncharacterized protein 99.8 3.5E-18 1.2E-22 137.2 14.1 121 203-344 1-121 (122)
20 3jtf_A Magnesium and cobalt ef 99.8 2.4E-18 8.3E-23 140.1 12.8 124 201-343 3-126 (129)
21 3lfr_A Putative metal ION tran 99.8 1.5E-18 5.2E-23 142.8 10.9 126 202-343 2-127 (136)
22 3nqr_A Magnesium and cobalt ef 99.8 1.7E-18 5.9E-23 140.5 11.0 125 202-343 2-126 (127)
23 3lhh_A CBS domain protein; str 99.8 7E-18 2.4E-22 144.5 14.6 127 199-343 38-164 (172)
24 3gby_A Uncharacterized protein 99.8 4.9E-18 1.7E-22 137.9 11.9 124 201-343 3-126 (128)
25 3oco_A Hemolysin-like protein 99.8 4.2E-18 1.4E-22 142.9 11.4 126 200-343 17-143 (153)
26 2ef7_A Hypothetical protein ST 99.8 1.3E-17 4.6E-22 135.9 13.9 123 202-343 3-125 (133)
27 3lqn_A CBS domain protein; csg 99.8 1.4E-17 4.7E-22 138.8 13.9 132 200-343 12-143 (150)
28 3ocm_A Putative membrane prote 99.7 2E-17 7E-22 142.0 14.2 125 200-343 33-157 (173)
29 2rih_A Conserved protein with 99.7 2.3E-17 7.8E-22 136.1 14.0 122 203-343 5-128 (141)
30 2yzi_A Hypothetical protein PH 99.7 4.1E-17 1.4E-21 133.8 15.5 125 200-343 4-129 (138)
31 1pbj_A Hypothetical protein; s 99.7 2.8E-17 9.7E-22 132.3 14.2 122 204-344 2-123 (125)
32 2p9m_A Hypothetical protein MJ 99.7 1.9E-17 6.6E-22 135.7 13.0 126 200-343 5-136 (138)
33 3i8n_A Uncharacterized protein 99.7 4E-17 1.4E-21 133.0 13.9 126 41-265 3-128 (130)
34 3fv6_A YQZB protein; CBS domai 99.7 3.1E-17 1.1E-21 138.4 13.8 126 200-343 14-144 (159)
35 3fhm_A Uncharacterized protein 99.7 4.8E-17 1.6E-21 138.1 14.9 134 198-345 19-152 (165)
36 4gqw_A CBS domain-containing p 99.7 2.1E-17 7.2E-22 137.4 11.9 134 202-344 4-144 (152)
37 3oi8_A Uncharacterized protein 99.7 1.9E-17 6.5E-22 139.4 10.5 121 200-338 35-155 (156)
38 1y5h_A Hypothetical protein RV 99.7 3.1E-17 1E-21 133.8 10.9 126 200-343 5-131 (133)
39 3kxr_A Magnesium transporter, 99.7 9.8E-17 3.4E-21 141.6 14.8 121 200-343 51-174 (205)
40 3ctu_A CBS domain protein; str 99.7 3.8E-17 1.3E-21 137.2 11.3 129 202-343 14-142 (156)
41 3lv9_A Putative transporter; C 99.7 1.4E-16 4.6E-21 132.6 14.5 127 40-266 19-145 (148)
42 3k6e_A CBS domain protein; str 99.7 2.3E-17 7.8E-22 139.3 9.8 128 44-266 15-142 (156)
43 2rc3_A CBS domain; in SITU pro 99.7 1.9E-16 6.5E-21 129.5 14.9 128 203-345 6-133 (135)
44 3k2v_A Putative D-arabinose 5- 99.7 9.5E-17 3.3E-21 133.8 13.0 121 203-339 28-148 (149)
45 2emq_A Hypothetical conserved 99.7 1.3E-16 4.6E-21 133.7 13.9 133 200-344 8-140 (157)
46 3hf7_A Uncharacterized CBS-dom 99.7 3.1E-17 1.1E-21 133.8 9.6 126 44-266 2-127 (130)
47 3fv6_A YQZB protein; CBS domai 99.7 9.5E-17 3.3E-21 135.4 12.7 134 35-266 8-144 (159)
48 2o16_A Acetoin utilization pro 99.7 1.1E-16 3.6E-21 135.3 12.9 130 202-343 4-135 (160)
49 1yav_A Hypothetical protein BS 99.7 1.6E-16 5.6E-21 133.8 13.5 132 200-343 11-142 (159)
50 1vr9_A CBS domain protein/ACT 99.7 7.3E-17 2.5E-21 143.1 11.7 159 45-323 14-172 (213)
51 2nyc_A Nuclear protein SNF4; b 99.7 1.3E-16 4.4E-21 131.5 11.7 129 200-343 5-141 (144)
52 3sl7_A CBS domain-containing p 99.7 7.6E-17 2.6E-21 138.1 10.5 132 203-343 4-156 (180)
53 1o50_A CBS domain-containing p 99.7 1.5E-16 5.1E-21 133.8 12.1 133 198-343 11-153 (157)
54 1pvm_A Conserved hypothetical 99.7 2.3E-16 8E-21 136.3 13.6 125 203-343 9-133 (184)
55 3lhh_A CBS domain protein; str 99.7 2.6E-16 8.8E-21 134.7 13.3 127 40-266 38-164 (172)
56 3nqr_A Magnesium and cobalt ef 99.7 6.3E-17 2.1E-21 131.2 7.5 124 43-265 2-125 (127)
57 3kpb_A Uncharacterized protein 99.7 2.9E-16 1E-20 125.8 11.2 119 45-266 2-120 (122)
58 2pfi_A Chloride channel protei 99.7 5.6E-16 1.9E-20 130.6 13.4 131 200-343 10-147 (164)
59 2yzi_A Hypothetical protein PH 99.7 5.6E-16 1.9E-20 127.0 12.5 127 41-267 4-130 (138)
60 3jtf_A Magnesium and cobalt ef 99.7 1.6E-16 5.6E-21 129.2 9.2 124 42-266 3-126 (129)
61 4fry_A Putative signal-transdu 99.7 7.9E-16 2.7E-20 129.2 13.6 129 203-345 7-137 (157)
62 2p9m_A Hypothetical protein MJ 99.7 8E-16 2.7E-20 126.0 12.9 128 39-266 3-136 (138)
63 3oco_A Hemolysin-like protein 99.7 2E-16 7E-21 132.5 9.3 127 40-266 16-143 (153)
64 2j9l_A Chloride channel protei 99.7 9.6E-16 3.3E-20 131.9 13.7 137 200-344 8-166 (185)
65 3lfr_A Putative metal ION tran 99.7 1.5E-16 5.1E-21 130.7 8.2 126 43-266 2-127 (136)
66 3gby_A Uncharacterized protein 99.7 3E-16 1E-20 127.3 9.8 124 42-266 3-126 (128)
67 2ef7_A Hypothetical protein ST 99.7 8.7E-16 3E-20 125.0 12.6 126 41-267 1-126 (133)
68 3lqn_A CBS domain protein; csg 99.7 1.2E-16 4E-21 133.1 7.2 135 39-267 10-144 (150)
69 1pbj_A Hypothetical protein; s 99.7 8.7E-16 3E-20 123.5 12.0 121 45-266 2-122 (125)
70 2uv4_A 5'-AMP-activated protei 99.7 1.7E-15 5.9E-20 126.5 14.1 117 216-343 30-151 (152)
71 3ocm_A Putative membrane prote 99.6 9E-16 3.1E-20 131.7 12.3 126 40-266 32-157 (173)
72 2d4z_A Chloride channel protei 99.6 1.1E-15 3.8E-20 138.8 13.1 136 200-343 10-246 (250)
73 4gqw_A CBS domain-containing p 99.6 6.8E-16 2.3E-20 128.2 10.4 142 42-267 3-144 (152)
74 3l2b_A Probable manganase-depe 99.6 1.1E-15 3.7E-20 138.1 12.4 131 202-342 6-243 (245)
75 2nyc_A Nuclear protein SNF4; b 99.6 2.4E-15 8.1E-20 123.8 13.3 134 42-266 6-141 (144)
76 3k2v_A Putative D-arabinose 5- 99.6 9.1E-16 3.1E-20 127.8 10.6 122 43-262 27-148 (149)
77 1o50_A CBS domain-containing p 99.6 1.9E-15 6.5E-20 127.0 12.7 140 41-266 13-153 (157)
78 3fhm_A Uncharacterized protein 99.6 5.3E-16 1.8E-20 131.6 9.3 131 41-267 21-151 (165)
79 3oi8_A Uncharacterized protein 99.6 1.1E-15 3.6E-20 128.7 10.9 122 40-261 34-155 (156)
80 1vr9_A CBS domain protein/ACT 99.6 1.6E-15 5.5E-20 134.4 12.3 121 200-343 10-130 (213)
81 2rih_A Conserved protein with 99.6 3.2E-15 1.1E-19 123.1 13.2 124 43-265 4-127 (141)
82 3ctu_A CBS domain protein; str 99.6 6.3E-16 2.2E-20 129.6 8.8 134 39-267 10-143 (156)
83 2yvy_A MGTE, Mg2+ transporter 99.6 4.9E-15 1.7E-19 136.7 15.3 122 200-344 132-258 (278)
84 2o16_A Acetoin utilization pro 99.6 2.7E-15 9.2E-20 126.6 12.1 133 42-266 3-135 (160)
85 3kxr_A Magnesium transporter, 99.6 3.9E-15 1.3E-19 131.3 13.7 122 41-267 51-175 (205)
86 2oux_A Magnesium transporter; 99.6 2E-15 7E-20 139.9 12.1 122 199-343 133-259 (286)
87 2uv4_A 5'-AMP-activated protei 99.6 4E-15 1.4E-19 124.3 12.2 133 37-265 16-150 (152)
88 2rc3_A CBS domain; in SITU pro 99.6 1.1E-15 3.8E-20 124.8 8.3 126 45-267 7-132 (135)
89 1y5h_A Hypothetical protein RV 99.6 9.4E-16 3.2E-20 124.9 7.8 126 41-265 5-130 (133)
90 3sl7_A CBS domain-containing p 99.6 1.5E-15 5.2E-20 129.9 9.0 154 43-266 3-156 (180)
91 2pfi_A Chloride channel protei 99.6 4.6E-15 1.6E-19 124.9 11.8 135 41-266 10-147 (164)
92 4fry_A Putative signal-transdu 99.6 2.2E-15 7.4E-20 126.4 9.6 128 44-268 7-137 (157)
93 1pvm_A Conserved hypothetical 99.6 5.1E-15 1.8E-19 127.8 11.8 125 43-265 8-132 (184)
94 2emq_A Hypothetical conserved 99.6 8.6E-15 2.9E-19 122.6 12.3 134 40-267 7-140 (157)
95 3l2b_A Probable manganase-depe 99.6 5E-15 1.7E-19 133.7 11.6 199 43-264 6-242 (245)
96 1yav_A Hypothetical protein BS 99.6 4.4E-15 1.5E-19 124.9 8.9 133 40-266 10-142 (159)
97 2j9l_A Chloride channel protei 99.6 8E-15 2.7E-19 126.0 9.9 156 39-267 6-166 (185)
98 3pc3_A CG1753, isoform A; CBS, 99.6 1.6E-14 5.5E-19 144.8 12.7 128 200-345 381-513 (527)
99 2zy9_A Mg2+ transporter MGTE; 99.5 5.1E-14 1.7E-18 139.3 13.6 121 200-343 152-277 (473)
100 2oux_A Magnesium transporter; 99.5 3.2E-14 1.1E-18 131.8 11.5 120 42-266 135-259 (286)
101 2yvy_A MGTE, Mg2+ transporter 99.5 8.3E-14 2.8E-18 128.4 11.8 122 41-267 132-258 (278)
102 3org_A CMCLC; transporter, tra 99.5 1.6E-14 5.6E-19 147.7 7.2 134 201-344 451-626 (632)
103 2d4z_A Chloride channel protei 99.5 1.9E-13 6.4E-18 124.1 12.5 64 42-114 11-74 (250)
104 3pc3_A CG1753, isoform A; CBS, 99.5 1.2E-13 4.1E-18 138.5 11.4 129 40-268 380-513 (527)
105 2zy9_A Mg2+ transporter MGTE; 99.4 1.4E-12 4.7E-17 129.0 14.9 120 42-266 153-277 (473)
106 3usb_A Inosine-5'-monophosphat 99.4 7.1E-12 2.4E-16 124.8 18.7 158 46-322 115-276 (511)
107 3usb_A Inosine-5'-monophosphat 99.4 1.4E-12 4.7E-17 130.0 11.7 112 215-344 121-235 (511)
108 1zfj_A Inosine monophosphate d 99.4 6.2E-12 2.1E-16 124.9 14.2 117 205-343 92-211 (491)
109 1me8_A Inosine-5'-monophosphat 99.4 2E-13 6.7E-18 136.0 3.3 177 40-330 92-269 (503)
110 3org_A CMCLC; transporter, tra 99.3 3.7E-13 1.3E-17 137.7 5.0 159 42-265 451-624 (632)
111 4fxs_A Inosine-5'-monophosphat 99.3 7.6E-13 2.6E-17 131.4 4.5 120 204-344 90-210 (496)
112 1me8_A Inosine-5'-monophosphat 99.3 4.7E-13 1.6E-17 133.3 -0.0 116 209-344 103-222 (503)
113 4fxs_A Inosine-5'-monophosphat 99.3 5.5E-12 1.9E-16 125.2 7.2 120 44-265 89-208 (496)
114 1vrd_A Inosine-5'-monophosphat 99.2 7.5E-13 2.6E-17 131.7 0.1 119 204-344 96-216 (494)
115 4avf_A Inosine-5'-monophosphat 99.2 7.7E-13 2.6E-17 131.2 -0.3 120 204-345 89-209 (490)
116 1zfj_A Inosine monophosphate d 99.2 3.4E-10 1.2E-14 112.4 18.7 117 46-266 92-211 (491)
117 4avf_A Inosine-5'-monophosphat 99.2 8.6E-12 2.9E-16 123.7 6.3 119 44-265 88-206 (490)
118 4af0_A Inosine-5'-monophosphat 99.2 8.9E-12 3E-16 122.0 5.5 111 55-264 146-256 (556)
119 4af0_A Inosine-5'-monophosphat 99.2 2.6E-12 8.8E-17 125.7 0.0 110 216-343 147-258 (556)
120 1vrd_A Inosine-5'-monophosphat 99.2 2.3E-11 7.9E-16 120.9 6.5 120 45-266 96-215 (494)
121 1jcn_A Inosine monophosphate d 99.1 1.3E-12 4.4E-17 130.6 -7.5 121 204-343 109-233 (514)
122 2cu0_A Inosine-5'-monophosphat 99.0 1.9E-11 6.3E-16 121.3 -0.4 113 206-343 96-208 (486)
123 2cu0_A Inosine-5'-monophosphat 99.0 1.5E-10 5.1E-15 114.9 4.6 163 46-332 95-257 (486)
124 1jcn_A Inosine monophosphate d 99.0 4.4E-11 1.5E-15 119.5 -0.9 124 45-265 109-232 (514)
125 3ghd_A A cystathionine beta-sy 98.9 1.7E-09 5.7E-14 78.3 5.1 46 56-110 1-46 (70)
126 3ghd_A A cystathionine beta-sy 98.9 4.5E-09 1.5E-13 76.0 7.2 69 217-297 2-70 (70)
127 3fio_A A cystathionine beta-sy 98.6 1.2E-07 4.1E-12 67.6 6.9 69 216-296 1-69 (70)
128 3fio_A A cystathionine beta-sy 98.4 6.6E-07 2.3E-11 63.7 7.8 50 293-344 1-50 (70)
129 1tif_A IF3-N, translation init 40.0 37 0.0013 24.1 4.2 28 317-345 15-42 (78)
130 3k2t_A LMO2511 protein; lister 22.8 1.2E+02 0.004 20.0 4.1 29 222-250 11-39 (57)
131 1svj_A Potassium-transporting 20.4 80 0.0027 25.4 3.5 34 303-338 121-154 (156)
No 1
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.91 E-value=1.9e-24 Score=200.76 Aligned_cols=196 Identities=16% Similarity=0.226 Sum_probs=164.0
Q ss_pred ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA 121 (351)
Q Consensus 42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~ 121 (351)
...+++++|. ++++++.+++++.+|++.|.+++++++||+|+++ +++|+++..|++..+
T Consensus 91 ~~~~v~~im~---~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~--------~lvGivt~~dl~~~~---------- 149 (296)
T 3ddj_A 91 STTPIIDYMT---PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIND--------KPVGIVTEREFLLLY---------- 149 (296)
T ss_dssp HTSBGGGTSE---ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTS--------CEEEEEEHHHHGGGG----------
T ss_pred hcccHHHhcc---CCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCC--------cEEEEEeHHHHHHhh----------
Confidence 4688999997 5788999999999999999999999999998753 899999999988321
Q ss_pred hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713 122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK 201 (351)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~ 201 (351)
. ....
T Consensus 150 -------------------------------------------------------------------------~--~~~~ 154 (296)
T 3ddj_A 150 -------------------------------------------------------------------------K--DLDE 154 (296)
T ss_dssp -------------------------------------------------------------------------G--GSCC
T ss_pred -------------------------------------------------------------------------h--cccc
Confidence 0 1133
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v 281 (351)
..++.++|. +++.++.+++++.++++.|.+++++++||+|++ |+++|+||.+|+++.+...............++
T Consensus 155 ~~~v~~~m~----~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v 229 (296)
T 3ddj_A 155 IFPVKVFMS----TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVV 229 (296)
T ss_dssp CCBHHHHSB----CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBH
T ss_pred cccHHHhhc----CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCH
Confidence 468999998 569999999999999999999999999999974 899999999999998752210000011245678
Q ss_pred cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
.+ +|. +++++|.+++++.+|+++|.+++.+++||+|+ +|+++|+||..||++.+.+.
T Consensus 230 ~~----~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~Dil~~l~~~ 286 (296)
T 3ddj_A 230 KD----VMV-TNLVTIDELASVNRAAAEMIVKRIGSLLILNK-DNTIRGIITERDLLIALHHI 286 (296)
T ss_dssp HH----HSB-CCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHH
T ss_pred HH----HhC-CCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEcHHHHHHHHHHH
Confidence 88 586 88999999999999999999999999999997 89999999999999987643
No 2
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.91 E-value=4e-23 Score=189.53 Aligned_cols=203 Identities=18% Similarity=0.314 Sum_probs=160.7
Q ss_pred ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713 45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV 124 (351)
Q Consensus 45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~ 124 (351)
++.+.+. .++++++++++|+.+|++.|.+++++++||+|++.+ +++|+++..||+.++.......-
T Consensus 4 ~v~~~i~--~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~-------~~~Givt~~di~~~~~~~~~~~~----- 69 (280)
T 3kh5_A 4 RVMKIAQ--NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNN-------KVVGIITSMDIVDFMGGGSKYNL----- 69 (280)
T ss_dssp BGGGTSC--CSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTC-------BEEEEEEHHHHHHHTTTSGGGHH-----
T ss_pred hHHHHhc--CCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCC-------eEEEEEEHHHHHHHhcccchhhh-----
Confidence 4555443 368999999999999999999999999999996432 89999999999965422111000
Q ss_pred ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713 125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT 204 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~ 204 (351)
. . ......+.. ....+
T Consensus 70 --------------------------------~--------------~-----------~~~~~~~~~-------~~~~~ 85 (280)
T 3kh5_A 70 --------------------------------I--------------R-----------EKHERNFLA-------AINEP 85 (280)
T ss_dssp --------------------------------H--------------H-----------TTSTTCHHH-------HTTSB
T ss_pred --------------------------------h--------------h-----------hccccchhH-------Hhhhh
Confidence 0 0 000011111 11468
Q ss_pred hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccccc
Q 018713 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL 284 (351)
Q Consensus 205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L 284 (351)
++++|+ +++.++++++++.++++.|.+++++++||+|+ +|+++|++|.+|+++.+..... ...++.+
T Consensus 86 v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~-------~~~~v~~- 152 (280)
T 3kh5_A 86 VREIME----ENVITLKENADIDEAIETFLTKNVGGAPIVND-ENQLISLITERDVIRALLDKID-------ENEVIDD- 152 (280)
T ss_dssp GGGTSB----CSCCCEETTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHGGGSC-------TTCBSGG-
T ss_pred HHHhcC----CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC-CCEEEEEEEHHHHHHHHhhcCC-------CCCCHHH-
Confidence 999999 56999999999999999999999999999998 4899999999999998865432 2347888
Q ss_pred ccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 285 GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 285 ~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
+|. ++++++++++++.++++.|.+++.+.+||++ +|+++|+||..|+++.+...
T Consensus 153 ---~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~~~ 206 (280)
T 3kh5_A 153 ---YIT-RDVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLGSD 206 (280)
T ss_dssp ---GCB-CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHTSH
T ss_pred ---HhC-CCCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHhhh
Confidence 586 8889999999999999999999999999995 59999999999999988654
No 3
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.91 E-value=1.8e-23 Score=196.48 Aligned_cols=222 Identities=13% Similarity=0.230 Sum_probs=168.4
Q ss_pred HHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713 36 TLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (351)
Q Consensus 36 ~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~ 115 (351)
.+..+|...++.++|. ++.++++++.++|+.+|++.|.+++++++||+|++.+ +++|+++..|++..+....
T Consensus 22 ~i~~~l~~~~~~d~m~-~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~-------~lvGilt~~Dl~~~l~~~~ 93 (323)
T 3t4n_C 22 SIRKFLNSKTSYDVLP-VSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTS-------RFAGLLTTTDFINVIQYYF 93 (323)
T ss_dssp HHHHHHHHSBHHHHSC-SEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTT-------EEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHhhCC-CCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCC-------eEEEEEEHHHHHHHHHHHH
Confidence 4556778999999997 5678999999999999999999999999999997643 8999999999997665432
Q ss_pred HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhh-hhHHHHHh
Q 018713 116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRL-HEDFYKVI 194 (351)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~l 194 (351)
..... + . . .+.. ...+.+.
T Consensus 94 ~~~~~-~-------------------------------~-~--------------------------l~~~~~~~v~~i- 113 (323)
T 3t4n_C 94 SNPDK-F-------------------------------E-L--------------------------VDKLQLDGLKDI- 113 (323)
T ss_dssp HCGGG-G-------------------------------G-G--------------------------GGGCBHHHHHHH-
T ss_pred cCcch-h-------------------------------H-H--------------------------HHHHHHHHHHHH-
Confidence 11000 0 0 0 0000 0000000
Q ss_pred hhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCC-----EEEEEeHHHHHHHhhcCCC
Q 018713 195 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD-----IKNYITQSAVVQGLEGCKG 269 (351)
Q Consensus 195 ~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~-----liGiIt~~dil~~l~~~~~ 269 (351)
..+.++|. .+++++++++++.+|++.|.+++++++||+|++ +. ++|++|.+|+++++..+..
T Consensus 114 --------~~~~~~~~----~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~~~~~l~Givt~~di~~~l~~~~~ 180 (323)
T 3t4n_C 114 --------ERALGVDQ----LDTASIHPSRPLFEACLKMLESRSGRIPLIDQD-EETHREIVVSVLTQYRILKFVALNCR 180 (323)
T ss_dssp --------HHHTTC--------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEEC-TTTCCEEEEEEEEHHHHHHHHHHHCG
T ss_pred --------HHHhCCCC----CCceEeCCCCcHHHHHHHHHhCCeeEEEEEecC-CCCCccceEEEecHHHHHHHHHhcCC
Confidence 11233445 558899999999999999999999999999974 54 9999999999998864321
Q ss_pred CchhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 270 RDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 270 ~~~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
. ..+...++.+++++ |. ++++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+.
T Consensus 181 ~---~~~~~~~v~~~~~~-m~-~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~ 249 (323)
T 3t4n_C 181 E---THFLKIPIGDLNII-TQ-DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGG 249 (323)
T ss_dssp G---GGGCCSBGGGTTCS-BC-TTCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETTHHHHHHHTT
T ss_pred c---hhhhhCcHHHcCCC-CC-CCcEEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHHHHHHhhc
Confidence 1 22346678884332 65 88999999999999999999999999999998 89999999999999987654
No 4
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.91 E-value=1.3e-23 Score=195.04 Aligned_cols=198 Identities=16% Similarity=0.210 Sum_probs=164.8
Q ss_pred HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (351)
Q Consensus 40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~ 119 (351)
.+...+|+++|. ++++++++++|+.+|++.|.+++++++||+| + +++|+++..||+.++......
T Consensus 16 ~~~~~~V~dim~---~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~---------~l~GivT~~Di~~~~~~~~~~-- 80 (296)
T 3ddj_A 16 YFQGMNIETLMI---KNPPILSKEDRLGSAFKKINEGGIGRIIVAN-E---------KIEGLLTTRDLLSTVESYCKD-- 80 (296)
T ss_dssp TTCCSSGGGTCE---ESCCEECTTSBHHHHHHHTTGGGCCEEEEES-S---------SEEEEEEHHHHHGGGTTCC----
T ss_pred hhcccCHHHhcc---CCCcEECCCccHHHHHHHHHHCCCceEEEEC-C---------eEEEEEeHHHHHHHhcccccc--
Confidence 456789999997 5899999999999999999999999999998 3 899999999999543211000
Q ss_pred hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 199 (351)
.....++..
T Consensus 81 ----------------------------------------------------------------~~~~~~~~~------- 89 (296)
T 3ddj_A 81 ----------------------------------------------------------------SCSQGDLYH------- 89 (296)
T ss_dssp -----------------------------------------------------------------CCHHHHHH-------
T ss_pred ----------------------------------------------------------------cccchhhHH-------
Confidence 001122221
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
....+++++|+ ++++++.+++++.++++.|.+++++++||+|++ |+++|++|.+|+++.+.... ...
T Consensus 90 ~~~~~v~~im~----~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~lvGivt~~dl~~~~~~~~--------~~~ 156 (296)
T 3ddj_A 90 ISTTPIIDYMT----PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYKDLD--------EIF 156 (296)
T ss_dssp HHTSBGGGTSE----ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGGGSC--------CCC
T ss_pred HhcccHHHhcc----CCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHhhhccc--------ccc
Confidence 12467999999 458999999999999999999999999999884 89999999999988775432 345
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~ 342 (351)
++.+ +|. ++++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.
T Consensus 157 ~v~~----~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~ 213 (296)
T 3ddj_A 157 PVKV----FMS-TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLA 213 (296)
T ss_dssp BHHH----HSB-CSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred cHHH----hhc-CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence 7888 586 88999999999999999999999999999997 899999999999998875
No 5
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.90 E-value=1.2e-23 Score=193.08 Aligned_cols=192 Identities=17% Similarity=0.293 Sum_probs=160.3
Q ss_pred cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (351)
Q Consensus 43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~ 122 (351)
+.+++++|. ++++++++++++.+|++.|.+++++++||+|+++ +++|+++..|++.++...
T Consensus 83 ~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~-------- 143 (280)
T 3kh5_A 83 NEPVREIME---ENVITLKENADIDEAIETFLTKNVGGAPIVNDEN--------QLISLITERDVIRALLDK-------- 143 (280)
T ss_dssp TSBGGGTSB---CSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTC--------BEEEEEEHHHHHHHHGGG--------
T ss_pred hhhHHHhcC---CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCC--------EEEEEEEHHHHHHHHhhc--------
Confidence 578999997 5889999999999999999999999999998753 899999999988543111
Q ss_pred ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~ 202 (351)
....
T Consensus 144 ----------------------------------------------------------------------------~~~~ 147 (280)
T 3kh5_A 144 ----------------------------------------------------------------------------IDEN 147 (280)
T ss_dssp ----------------------------------------------------------------------------SCTT
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 1223
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCc-----hhhhhc
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-----WFDIIA 277 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~-----~l~~l~ 277 (351)
.++.++|. +++.++++++++.++++.|.+++++++||++ +|+++|+||.+|+++.+....... ......
T Consensus 148 ~~v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 221 (280)
T 3kh5_A 148 EVIDDYIT----RDVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREIT 221 (280)
T ss_dssp CBSGGGCB----CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHH
T ss_pred CCHHHHhC----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhh
Confidence 47889998 5689999999999999999999999999994 369999999999999885321000 011124
Q ss_pred cCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341 (351)
Q Consensus 278 ~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l 341 (351)
..++.+ +|. +++++|++++++.+|++.|.+++++++||+|+ +|+++|+||.+||++++
T Consensus 222 ~~~v~~----~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Givt~~dil~~l 279 (280)
T 3kh5_A 222 NVRMEE----IMK-RDVITAKEGDKLKKIAEIMVTNDIGALPVVDE-NLRIKGIITEKDVLKYF 279 (280)
T ss_dssp HCBHHH----HSB-SSCCCBCTTCBHHHHHHHHHHHTCCEEEEECT-TCBEEEEEEHHHHGGGG
T ss_pred CCcHHH----Hhc-CCCEEECCCCCHHHHHHHHHHCCCCEEEEECC-CCeEEEEEeHHHHHHhh
Confidence 567788 586 88999999999999999999999999999998 88999999999999875
No 6
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.90 E-value=5.5e-23 Score=193.93 Aligned_cols=229 Identities=12% Similarity=0.158 Sum_probs=172.0
Q ss_pred hHHHHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHH
Q 018713 33 LQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVL 112 (351)
Q Consensus 33 ~~~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~ 112 (351)
..+.+..+|.+.+++++|. ++++++++++++|+.+|++.|.+++++++||+|++.+ +++|+|+..|++..+.
T Consensus 24 ~~~~~~~~l~~~~v~dim~-p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~-------~~vGivt~~Dll~~l~ 95 (330)
T 2v8q_E 24 NSSVYTTFMKSHRCYDLIP-TSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQ-------SFVGMLTITDFINILH 95 (330)
T ss_dssp CSCHHHHHHHHSBGGGGSC-SEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTT-------EEEEEEEHHHHHHHHH
T ss_pred hhHHHHHHHHcCcHhhhcc-CCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCC-------eEEEEEEHHHHHHHHH
Confidence 3345678899999999995 4578999999999999999999999999999997632 7999999999997655
Q ss_pred HhhHHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHH
Q 018713 113 ETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYK 192 (351)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 192 (351)
.......... . .. ......++.
T Consensus 96 ~~~~~~~~~~---------------~----------------------------------------~l--~~~~~~~~~- 117 (330)
T 2v8q_E 96 RYYKSALVQI---------------Y----------------------------------------EL--EEHKIETWR- 117 (330)
T ss_dssp HHHHHHTTTC---------------C----------------------------------------CG--GGCBHHHHH-
T ss_pred HHHhccccch---------------h----------------------------------------HH--hhccHHHHH-
Confidence 4321110000 0 00 000001111
Q ss_pred HhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch
Q 018713 193 VILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW 272 (351)
Q Consensus 193 ~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~ 272 (351)
.+++++|. +++.++++++++.++++.|.+++++++||+|+++|+++|+||.+|+++++........
T Consensus 118 ----------~~~~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~ 183 (330)
T 2v8q_E 118 ----------EVYLQDSF----KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFP 183 (330)
T ss_dssp ----------HHHSSSSC----CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSS
T ss_pred ----------HHHhhccc----CCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccC
Confidence 13456787 5699999999999999999999999999998622799999999999998854321111
Q ss_pred hhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 273 l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
...+...++.++. +|..++++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+...
T Consensus 184 ~~~~~~~~v~~~~--v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~l~Giit~~dl~~~~~~~ 252 (330)
T 2v8q_E 184 KPEFMSKSLEELQ--IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEK 252 (330)
T ss_dssp CCGGGGSBHHHHT--CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSS
T ss_pred chhhhcCCHHHhc--ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEHHHHHHHHhcc
Confidence 1222345566642 132267889999999999999999999999999997 79999999999999887643
No 7
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.90 E-value=5.2e-23 Score=193.38 Aligned_cols=191 Identities=16% Similarity=0.214 Sum_probs=156.2
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
++++++++++++.+|++.|.+++++++||+|+++. +...+++|+++..|++.++......
T Consensus 122 ~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~---~~~~~l~Givt~~di~~~l~~~~~~----------------- 181 (323)
T 3t4n_C 122 LDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEE---THREIVVSVLTQYRILKFVALNCRE----------------- 181 (323)
T ss_dssp --CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTT---TCCEEEEEEEEHHHHHHHHHHHCGG-----------------
T ss_pred CCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCC---CCccceEEEecHHHHHHHHHhcCCc-----------------
Confidence 68889999999999999999999999999987531 0111399999999999765433110
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhh---hhc
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSI---IKS 211 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~di---m~~ 211 (351)
......+++++ |.
T Consensus 182 ---------------------------------------------------------------~~~~~~~v~~~~~~m~- 197 (323)
T 3t4n_C 182 ---------------------------------------------------------------THFLKIPIGDLNIITQ- 197 (323)
T ss_dssp ---------------------------------------------------------------GGGCCSBGGGTTCSBC-
T ss_pred ---------------------------------------------------------------hhhhhCcHHHcCCCCC-
Confidence 01234678888 87
Q ss_pred cCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCC
Q 018713 212 YRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS 291 (351)
Q Consensus 212 ~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~ 291 (351)
++++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+.... . .....++.+ +|.
T Consensus 198 ---~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~~----~-~~~~~~v~~----~m~- 263 (323)
T 3t4n_C 198 ---DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGI----Y-NDLSLSVGE----ALM- 263 (323)
T ss_dssp ---TTCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETTHHHHHHHTTH----H-HHTTSBHHH----HGG-
T ss_pred ---CCcEEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHHHHHHhhch----h-hhccCCHHH----HHh-
Confidence 56999999999999999999999999999998 489999999999999886432 0 113557777 575
Q ss_pred C------CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 292 D------EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 292 ~------~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
+ ++++|++++++.+++++|.+++++++||+|+ +|+++|+||.+||++++.+.
T Consensus 264 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 264 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp GSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECT-TSBEEEEEEHHHHHHHHHHC
T ss_pred hccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECC-CCcEEEEEEHHHHHHHHHhc
Confidence 4 7899999999999999999999999999998 89999999999999988653
No 8
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.90 E-value=3.6e-23 Score=190.40 Aligned_cols=199 Identities=16% Similarity=0.260 Sum_probs=153.5
Q ss_pred hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHH-HHHHhhHHHh
Q 018713 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL-WVLETAELAA 119 (351)
Q Consensus 41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~-~~~~~~~~~~ 119 (351)
+.+.++.++|. .+++++++++++.+|++.|.++++..+||+|+++ +++|+++..|++. ++...
T Consensus 57 ~~~~~v~~~m~---~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~--------~~~Giit~~di~~~~~~~~----- 120 (282)
T 2yzq_A 57 PDEEQLAMLVK---RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG--------KPVGILTVGDIIRRYFAKS----- 120 (282)
T ss_dssp -------CCCB---SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTS--------CEEEEEEHHHHHHHTTTTC-----
T ss_pred hccCCHHHHcC---CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCC--------EEEEEEEHHHHHHHHHhcc-----
Confidence 34678888886 4688999999999999999999999999998753 7999999999884 21100
Q ss_pred hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 199 (351)
..
T Consensus 121 ------------------------------------------------------------------------------~~ 122 (282)
T 2yzq_A 121 ------------------------------------------------------------------------------EK 122 (282)
T ss_dssp ------------------------------------------------------------------------------SG
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH------HHhh------cC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV------QGLE------GC 267 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil------~~l~------~~ 267 (351)
....+++++|. .+++++++++++.++++.|.+++++++||+|++ |+++|+||.+|++ +++. ..
T Consensus 123 ~~~~~v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~ 197 (282)
T 2yzq_A 123 YKGVEIEPYYQ----RYVSIVWEGTPLKAALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASS 197 (282)
T ss_dssp GGGCBSTTTSB----SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC-----------
T ss_pred cccCcHHHHhC----CCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHhhhhhhhhhhccchhhhhh
Confidence 12356788997 568999999999999999999999999999874 7999999999998 4442 00
Q ss_pred --------CCCchh----hhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHH
Q 018713 268 --------KGRDWF----DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335 (351)
Q Consensus 268 --------~~~~~l----~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~ 335 (351)
.....+ ......++.+ +|+ +++++|.+++++.+|+++|.+++++++||+|+ +|+++|+||.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGiit~~ 271 (282)
T 2yzq_A 198 EEEWILESHPTLLFEKFELQLPNKPVAE----IMT-RDVIVATPHMTVHEVALKMAKYSIEQLPVIRG-EGDLIGLIRDF 271 (282)
T ss_dssp ---------------------CCCBGGG----TCB-SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET-TTEEEEEEEHH
T ss_pred hhhhhcccchHHHHhHhhhhhccCCHHH----hcC-CCCceeCCCCCHHHHHHHHHHcCcceeEEECC-CCCEEEEEeHH
Confidence 000000 1123567888 686 89999999999999999999999999999998 88999999999
Q ss_pred HHHHHhcCc
Q 018713 336 DIRHLLLKP 344 (351)
Q Consensus 336 DIl~~l~~~ 344 (351)
||++.+.+.
T Consensus 272 Dil~~~~~~ 280 (282)
T 2yzq_A 272 DLLKVLVKS 280 (282)
T ss_dssp HHGGGGCC-
T ss_pred HHHHHHHhh
Confidence 999988764
No 9
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.89 E-value=7.1e-22 Score=186.48 Aligned_cols=225 Identities=18% Similarity=0.235 Sum_probs=167.7
Q ss_pred HHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713 36 TLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (351)
Q Consensus 36 ~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~ 115 (351)
.+..++.+.++.++|. ++.+++++++++|+.+|++.|.+++++++||+|++. ++++|+|+..||+.++....
T Consensus 14 ~~~~~l~~~~v~dim~-~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~-------~~~vGiv~~~Dl~~~~~~~~ 85 (334)
T 2qrd_G 14 EIQAFIRSRTSYDVLP-TSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLTMADFVNVIKYYY 85 (334)
T ss_dssp HHHHHHHHSBGGGGSC-SEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhhhCC-CCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCC-------CeEEEEEEHHHHHHHHHHHh
Confidence 3556788899999996 556799999999999999999999999999998753 28999999999997654321
Q ss_pred HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhh
Q 018713 116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL 195 (351)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ 195 (351)
..... +.....+ . .....++.+.
T Consensus 86 ~~~~~-----------------------------~~~~~~~-------------------~-------~~~~~~i~~~-- 108 (334)
T 2qrd_G 86 QSSSF-----------------------------PEAIAEI-------------------D-------KFRLLGLREV-- 108 (334)
T ss_dssp HHCSC-----------------------------GGGGGGG-------------------G-------SCBHHHHHHH--
T ss_pred hccCC-----------------------------ccHHHHH-------------------h-------hhchhhHHHH--
Confidence 10000 0000000 0 0000111111
Q ss_pred hcCCCCcCchHhhhhccCCCCc--EEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCC----EEEEEeHHHHHHHhhcCCC
Q 018713 196 QEEPFKSTTVRSIIKSYRWAPF--LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD----IKNYITQSAVVQGLEGCKG 269 (351)
Q Consensus 196 ~~~~~~~~~V~dim~~~~~~~~--~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~----liGiIt~~dil~~l~~~~~ 269 (351)
.+++|. .++ +++.+++++.++++.|.+++++++||+|+++++ ++|++|.+|+++++..+..
T Consensus 109 ---------l~~im~----~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~ 175 (334)
T 2qrd_G 109 ---------ERKIGA----IPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK 175 (334)
T ss_dssp ---------HHHHTC----SCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCG
T ss_pred ---------HHhhcc----CCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhcc
Confidence 135676 335 899999999999999999999999999874234 9999999999998854211
Q ss_pred CchhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 270 RDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 270 ~~~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
.. .....++.+++. +|. ++++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+.
T Consensus 176 --~~-~~~~~~v~~l~~-~m~-~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~-~~~~~Giit~~dl~~~~~~~ 244 (334)
T 2qrd_G 176 --ET-AMLRVPLNQMTI-GTW-SNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDG 244 (334)
T ss_dssp --GG-GGCCCBGGGSSC-SBC-SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETHHHHHHHTTS
T ss_pred --ch-hhhhCcHHHhCC-ccc-CCceEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHHHHhhcc
Confidence 11 123456777422 265 88899999999999999999999999999998 89999999999999987654
No 10
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.87 E-value=3.1e-22 Score=184.10 Aligned_cols=177 Identities=17% Similarity=0.240 Sum_probs=134.5
Q ss_pred ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713 45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV 124 (351)
Q Consensus 45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~ 124 (351)
++.++|. ++++++++++|+.+|++.|.++++.++||+|+++ +++|+++..|++..
T Consensus 2 ~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~--------~~~Giv~~~dl~~~-------------- 56 (282)
T 2yzq_A 2 RVKTIMT---QNPVTITLPATRNYALELFKKYKVRSFPVVNKEG--------KLVGIISVKRILVN-------------- 56 (282)
T ss_dssp BHHHHSE---ESCCCEESSCC------------CCEEEEECTTC--------CEEEEEESSCC-----------------
T ss_pred chHHhcc---CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCC--------cEEEEEEHHHHHhh--------------
Confidence 4566775 6788999999999999999999999999998643 89999998877621
Q ss_pred ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713 125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT 204 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~ 204 (351)
....+
T Consensus 57 ---------------------------------------------------------------------------~~~~~ 61 (282)
T 2yzq_A 57 ---------------------------------------------------------------------------PDEEQ 61 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------------------hccCC
Confidence 12356
Q ss_pred hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH-HhhcCCCCchhhhhccCcccc
Q 018713 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-GLEGCKGRDWFDIIASQPISD 283 (351)
Q Consensus 205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~-~l~~~~~~~~l~~l~~~~v~~ 283 (351)
++++|. +++.++++++++.++++.|.+++.+++||+|++ |+++|++|.+|+++ ++..+. . ....++.+
T Consensus 62 v~~~m~----~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~---~---~~~~~v~~ 130 (282)
T 2yzq_A 62 LAMLVK----RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYFAKSE---K---YKGVEIEP 130 (282)
T ss_dssp --CCCB----SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCS---G---GGGCBSTT
T ss_pred HHHHcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhccC---C---cccCcHHH
Confidence 788888 458899999999999999999999999999984 89999999999998 765421 0 13456778
Q ss_pred cccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 018713 284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338 (351)
Q Consensus 284 L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl 338 (351)
+|. .+++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..|++
T Consensus 131 ----~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dl~ 179 (282)
T 2yzq_A 131 ----YYQ-RYVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLL 179 (282)
T ss_dssp ----TSB-SCCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGG
T ss_pred ----HhC-CCCEEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHh
Confidence 585 78899999999999999999999999999997 79999999999998
No 11
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.86 E-value=4.3e-21 Score=181.08 Aligned_cols=190 Identities=14% Similarity=0.196 Sum_probs=152.7
Q ss_pred cEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccccc
Q 018713 57 VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGT 136 (351)
Q Consensus 57 ~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (351)
++++.+++++.+|++.|.+++++++||+|++++. ....++|+++..||+.++......
T Consensus 119 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---~~~~~~Givt~~dl~~~~~~~~~~------------------- 176 (334)
T 2qrd_G 119 TIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET---GSEMIVSVLTQYRILKFISMNCKE------------------- 176 (334)
T ss_dssp CCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTT---TEEEEEEEEEHHHHHHHHHHHCGG-------------------
T ss_pred eeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCc---CccceEEEeeHHHHHHHHHhhccc-------------------
Confidence 4899999999999999999999999999875320 001299999999999665322100
Q ss_pred ccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHh---hhhccC
Q 018713 137 VGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRS---IIKSYR 213 (351)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~d---im~~~~ 213 (351)
......++++ +|.
T Consensus 177 -------------------------------------------------------------~~~~~~~v~~l~~~m~--- 192 (334)
T 2qrd_G 177 -------------------------------------------------------------TAMLRVPLNQMTIGTW--- 192 (334)
T ss_dssp -------------------------------------------------------------GGGCCCBGGGSSCSBC---
T ss_pred -------------------------------------------------------------hhhhhCcHHHhCCccc---
Confidence 0012356777 477
Q ss_pred CCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCC--
Q 018713 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-- 291 (351)
Q Consensus 214 ~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~-- 291 (351)
+++.++++++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+..... . ....++.+ +|..
T Consensus 193 -~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~-~~~~~Giit~~dl~~~~~~~~~-~----~~~~~v~~----~m~~~~ 261 (334)
T 2qrd_G 193 -SNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDGDY-S----NLDLSVGE----ALLKRP 261 (334)
T ss_dssp -SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETHHHHHHHTTSCG-G----GGGSBHHH----HHTTCC
T ss_pred -CCceEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHHHHhhcccc-c----cccCcHHH----HHhccc
Confidence 55889999999999999999999999999997 4899999999999998864320 0 13456777 4752
Q ss_pred ---CCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 292 ---DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 292 ---~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
+++++|.+++++.++++.|.+++++++||+|+ +|+++|+||..||++.+.+.
T Consensus 262 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~l~Giit~~dil~~~~~~ 316 (334)
T 2qrd_G 262 ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYIIYD 316 (334)
T ss_dssp TTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECT-TCBEEEEEEHHHHHHHHHSC
T ss_pred ccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHHHHHHHhc
Confidence 37899999999999999999999999999997 89999999999999988664
No 12
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.86 E-value=3.2e-21 Score=181.80 Aligned_cols=198 Identities=17% Similarity=0.212 Sum_probs=154.7
Q ss_pred cccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccc
Q 018713 46 VLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVG 125 (351)
Q Consensus 46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~ 125 (351)
+.++|. ++++++++++++.+|++.|.+++++.+||+|++.+ +++|+|+..|++.++.......
T Consensus 120 ~~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~-------~~~Givt~~dl~~~~~~~~~~~------- 182 (330)
T 2v8q_E 120 YLQDSF---KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESG-------NTLYILTHKRILKFLKLFITEF------- 182 (330)
T ss_dssp HSSSSC---CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTC-------CEEEEECHHHHHHHHHHHSCSS-------
T ss_pred Hhhccc---CCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCC-------cEEEEEcHHHHHHHHHHHhhcc-------
Confidence 345665 67899999999999999999999999999997222 7999999999996543221000
Q ss_pred cccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCch
Q 018713 126 TATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTV 205 (351)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V 205 (351)
+ . ..+...++
T Consensus 183 ------------------------~------------------------------------~----------~~~~~~~v 192 (330)
T 2v8q_E 183 ------------------------P------------------------------------K----------PEFMSKSL 192 (330)
T ss_dssp ------------------------S------------------------------------C----------CGGGGSBH
T ss_pred ------------------------C------------------------------------c----------hhhhcCCH
Confidence 0 0 00122455
Q ss_pred Hhh--hhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713 206 RSI--IKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD 283 (351)
Q Consensus 206 ~di--m~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~ 283 (351)
.++ |+ ..++.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+..... .. ...++.+
T Consensus 193 ~~~~v~~---~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~l~Giit~~dl~~~~~~~~~-~~----~~~~v~~ 263 (330)
T 2v8q_E 193 EELQIGT---YANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKTY-NN----LDVSVTK 263 (330)
T ss_dssp HHHTCSB---CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSCC-CC----CSSBHHH
T ss_pred HHhcccC---cCCceEECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEHHHHHHHHhcccc-cc----ccCcHHH
Confidence 665 43 034889999999999999999999999999997 4799999999999988754321 00 1345666
Q ss_pred cccCccC-----CCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 284 LGLPFMS-----SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 284 L~~~~m~-----~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
+|. .+++++|++++++.+++++|.+++++++||+|+ +|+++|+||..||++.+.+.
T Consensus 264 ----~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~g~l~Giit~~Dil~~~~~~ 324 (330)
T 2v8q_E 264 ----ALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALVLT 324 (330)
T ss_dssp ----HGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHSS
T ss_pred ----HHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcC-CCcEEEEEeHHHHHHHHHhh
Confidence 342 278899999999999999999999999999998 89999999999999988765
No 13
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.80 E-value=8.3e-20 Score=156.11 Aligned_cols=133 Identities=24% Similarity=0.351 Sum_probs=111.4
Q ss_pred CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCc---------
Q 018713 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD--------- 271 (351)
Q Consensus 201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~--------- 271 (351)
...+|+++|+ ++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.........
T Consensus 16 ~~~~V~diM~----~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~ 90 (170)
T 4esy_A 16 RQVPIRDILT----SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-NGHLVGIITESDFLRGSIPFWIYEASEILSRAI 90 (170)
T ss_dssp HTSBGGGGCC----SCCCCEETTSBHHHHHHHHHHTTCSEEEEECT-TSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTS
T ss_pred cCCCHHHhcC----CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC-CccEEEEEEHHHHHHHHhhccccchhhhhhhcc
Confidence 3578999999 66999999999999999999999999999998 489999999999987654321000
Q ss_pred -------hhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 272 -------WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 272 -------~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
..+.....++++ +|+ +++++|++++++.+|+++|.+++++++||+|+ |+++|+||.+||++++...
T Consensus 91 ~~~~~~~~~~~~~~~~v~~----im~-~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGivt~~Dil~~l~~~ 163 (170)
T 4esy_A 91 PAPEVEHLFETGRKLTASA----VMT-QPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD--GVPVGIVTRRDLLKLLLLE 163 (170)
T ss_dssp CHHHHHHHHHHHTTCBHHH----HCB-CCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHTTTSCCC
T ss_pred chhhHHhhhccccccchhh----hcc-cCcccCCcchhHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHHHHHHhc
Confidence 011223556777 687 89999999999999999999999999999986 9999999999999987654
Q ss_pred c
Q 018713 345 E 345 (351)
Q Consensus 345 ~ 345 (351)
+
T Consensus 164 ~ 164 (170)
T 4esy_A 164 E 164 (170)
T ss_dssp -
T ss_pred c
Confidence 3
No 14
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.80 E-value=1.7e-19 Score=154.17 Aligned_cols=154 Identities=17% Similarity=0.225 Sum_probs=116.5
Q ss_pred HHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713 36 TLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (351)
Q Consensus 36 ~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~ 115 (351)
.+...+.++||+++|+ ++++++++++|+.+|++.|.+++++++||+|+++ +++|+|+..||+.......
T Consensus 10 ~~~~~l~~~~V~diM~---~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g--------~lvGiit~~Dll~~~~~~~ 78 (170)
T 4esy_A 10 AIARAIRQVPIRDILT---SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNG--------HLVGIITESDFLRGSIPFW 78 (170)
T ss_dssp HHHHHHHTSBGGGGCC---SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTS--------CEEEEEEGGGGGGGTCCTT
T ss_pred HHHHHHcCCCHHHhcC---CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCc--------cEEEEEEHHHHHHHHhhcc
Confidence 4556788999999997 6899999999999999999999999999999764 8999999999985433221
Q ss_pred HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhh
Q 018713 116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL 195 (351)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ 195 (351)
....... +.... .........
T Consensus 79 ~~~~~~~----------------------~~~~~------------------------------------~~~~~~~~~- 99 (170)
T 4esy_A 79 IYEASEI----------------------LSRAI------------------------------------PAPEVEHLF- 99 (170)
T ss_dssp HHHHHHH----------------------HTTTS------------------------------------CHHHHHHHH-
T ss_pred ccchhhh----------------------hhhcc------------------------------------chhhHHhhh-
Confidence 1110000 00000 000111111
Q ss_pred hcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 196 ~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
......+++++|+ ++++++++++++.+|++.|.+++++++||+|+ |+++|+||++||++++...
T Consensus 100 --~~~~~~~v~~im~----~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGivt~~Dil~~l~~~ 163 (170)
T 4esy_A 100 --ETGRKLTASAVMT----QPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD--GVPVGIVTRRDLLKLLLLE 163 (170)
T ss_dssp --HHHTTCBHHHHCB----CCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHTTTSCCC
T ss_pred --ccccccchhhhcc----cCcccCCcchhHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHHHHHHhc
Confidence 1134578999999 66999999999999999999999999999985 5999999999999988543
No 15
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.79 E-value=7.3e-19 Score=143.62 Aligned_cols=126 Identities=13% Similarity=0.150 Sum_probs=108.6
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~ 282 (351)
.+|+++|++. .++.++++++++.+|++.|.+++++++||+++++++++|+||.+|+++.+..+.. +...++.
T Consensus 2 ~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~------~~~~~v~ 73 (130)
T 3hf7_A 2 VSVNDIMVPR--NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE------FTKEIML 73 (130)
T ss_dssp CBHHHHSEEG--GGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC------CCHHHHH
T ss_pred cCHHHhCccH--HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc------cchhhHH
Confidence 5789999854 5689999999999999999999999999997534799999999999998865431 1234577
Q ss_pred ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
+ +| ++++++++++++.++++.|.+++++.+||+|+ +|+++|+||..||++.+.+
T Consensus 74 ~----~m--~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 74 R----AA--DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp H----HS--BCCCEEETTCBHHHHHHHHHHHCCCEEEEECT-TSCEEEEEEHHHHHHHHHC
T ss_pred H----hc--cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC-CCCEEEEeeHHHHHHHHhC
Confidence 7 46 57789999999999999999999999999998 8999999999999998764
No 16
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.78 E-value=1.1e-18 Score=147.39 Aligned_cols=127 Identities=15% Similarity=0.213 Sum_probs=110.0
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~ 282 (351)
..++++|+|. .++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++++..... ....+...++.
T Consensus 15 ~~~~~iM~P~--~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~-~~~lvGiit~~Di~~~~~~~~~--~~~~~~~~~v~ 89 (156)
T 3k6e_A 15 GQEETFLTPA--KNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMAYQMEHDL--SQEIMADTDIV 89 (156)
T ss_dssp TTGGGGEEET--TSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTC--CHHHHTTSBGG
T ss_pred ccHHHhCcch--hHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEecchhhhhhhccc--ccccccccCHH
Confidence 5789999976 88999999999999999999999999999998 4899999999999998765421 12234567888
Q ss_pred ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (351)
Q Consensus 283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~ 342 (351)
+ +|. ++++++++++++.+|++.|.++++ +||||+ +|+++|+||.+||++.+.
T Consensus 90 ~----im~-~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~-~g~l~GiiT~~Dil~~~~ 141 (156)
T 3k6e_A 90 H----MTK-TDVAVVSPDFTITEVLHKLVDESF--LPVVDA-EGIFQGIITRKSILKAVN 141 (156)
T ss_dssp G----TCB-CSCCCBCTTCCHHHHHHHTTTSSE--EEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred H----hhc-CCceecccccHHHHHHHHHHHcCC--eEEEec-CCEEEEEEEHHHHHHHHH
Confidence 8 686 899999999999999999988764 999998 999999999999999874
No 17
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.78 E-value=3.5e-18 Score=142.32 Aligned_cols=127 Identities=18% Similarity=0.280 Sum_probs=111.4
Q ss_pred CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278 (351)
Q Consensus 199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~ 278 (351)
.+...+|+++|++. .++.++++++++.+|++.|.+++++++||+|++.|+++|+||.+|+++.+.... .
T Consensus 19 ~l~~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~---------~ 87 (148)
T 3lv9_A 19 EFEEKKIREIMVPR--TDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN---------K 87 (148)
T ss_dssp GGGTCBGGGTSEET--TTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS---------C
T ss_pred ccCCCCHHHccccH--HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC---------C
Confidence 36678999999953 369999999999999999999999999999873269999999999998875431 4
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.++.+ +| ++++++++++++.+++++|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus 88 ~~v~~----~m--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 88 IELEE----IL--RDIIYISENLTIDKALERIRKEKLQLAIVVDE-YGGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp CCGGG----TC--BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT-TSSEEEEEEHHHHHHHHHH
T ss_pred ccHHH----hc--CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence 57888 57 57889999999999999999999999999998 8999999999999998753
No 18
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.78 E-value=8.7e-19 Score=142.91 Aligned_cols=127 Identities=12% Similarity=0.179 Sum_probs=108.3
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
+...+|+++|++. .++.++++++++.+|++.|.+++++++||+|++.|+++|+||.+|+++.+..+. ...
T Consensus 3 l~~~~v~~iM~~~--~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~--------~~~ 72 (130)
T 3i8n_A 3 AQDVPVTQVMTPR--PVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS--------GQK 72 (130)
T ss_dssp ----CCTTTSCCB--CCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT--------TTS
T ss_pred cCcCCHhhCCCcH--HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC--------CcC
Confidence 4557899999965 567799999999999999999999999999873379999999999999876532 245
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
++.+ +|. +++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus 73 ~v~~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 73 QLGA----VMR--PIQVVLNNTALPKVFDQMMTHRLQLALVVDE-YGTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp BHHH----HSE--ECCEEETTSCHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHHHT
T ss_pred CHHH----Hhc--CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC-CCCEEEEEEHHHHHHHHcC
Confidence 7788 573 6789999999999999999999999999998 8999999999999998754
No 19
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.78 E-value=3.5e-18 Score=137.16 Aligned_cols=121 Identities=26% Similarity=0.439 Sum_probs=107.6
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~ 282 (351)
.+|+++|. +++.++++++++.++++.|.+++.+++||+|+ +|+++|+|+.+|+++.+.... .++.
T Consensus 1 ~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~~----------~~v~ 65 (122)
T 3kpb_A 1 TLVKDILS----KPPITAHSNISIMEAAKILIKHNINHLPIVDE-HGKLVGIITSWDIAKALAQNK----------KTIE 65 (122)
T ss_dssp CBHHHHCC----SCCCCEETTSBHHHHHHHHHHHTCSCEEEECT-TSBEEEEECHHHHHHHHHTTC----------CBGG
T ss_pred CchHHhhC----CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHHHHHHhcc----------cCHH
Confidence 36899999 55999999999999999999999999999997 489999999999999875532 3688
Q ss_pred ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
+ +|. ++++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+.
T Consensus 66 ~----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Givt~~dl~~~l~~~ 121 (122)
T 3kpb_A 66 E----IMT-RNVITAHEDEPVDHVAIKMSKYNISGVPVVDD-YRRVVGIVTSEDISRLFGGK 121 (122)
T ss_dssp G----TSB-SSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHC--
T ss_pred H----Hhc-CCCeEECCCCCHHHHHHHHHHhCCCeEEEECC-CCCEEEEEeHHHHHHHhhcC
Confidence 8 586 78899999999999999999999999999998 89999999999999998764
No 20
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.77 E-value=2.4e-18 Score=140.13 Aligned_cols=124 Identities=11% Similarity=0.161 Sum_probs=106.9
Q ss_pred CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCc
Q 018713 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (351)
Q Consensus 201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~ 280 (351)
...+|+++|++. .++.++++++++.+|++.|.+++++++||+|++.++++|+||.+|+++.+.. ...+
T Consensus 3 ~~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~----------~~~~ 70 (129)
T 3jtf_A 3 AERTVADIMVPR--SRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE----------PALD 70 (129)
T ss_dssp -CCBHHHHCEEG--GGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC----------TTSC
T ss_pred CCCCHHHhCccH--HHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc----------CCcC
Confidence 457899999954 5588999999999999999999999999998733799999999999887642 2346
Q ss_pred ccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
+.+ +|. +++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||.+||++.+.+
T Consensus 71 v~~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 71 IRS----LVR--PAVFIPEVKRLNVLLREFRASRNHLAIVIDE-HGGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp GGG----GCB--CCCEEETTCBHHHHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHHHH
T ss_pred HHH----HhC--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence 788 574 5789999999999999999999999999998 8999999999999998753
No 21
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.77 E-value=1.5e-18 Score=142.75 Aligned_cols=126 Identities=12% Similarity=0.204 Sum_probs=107.8
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v 281 (351)
..+|+++|++. .++.++++++++.+|++.|.+++++++||+|++.++++|+||.+|+++.+..... ...++
T Consensus 2 ~~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~-------~~~~v 72 (136)
T 3lfr_A 2 DLQVRDIMVPR--SQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADG-------DSDDV 72 (136)
T ss_dssp -CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSG-------GGCCG
T ss_pred CCChHhccccH--HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccC-------CCcCH
Confidence 36799999954 5589999999999999999999999999998732699999999999988753221 35678
Q ss_pred cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.+ +|. +++++.+++++.+++++|.+++++.+||+|+ +|+++|+||..||++.+.+
T Consensus 73 ~~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~~ 127 (136)
T 3lfr_A 73 KK----LLR--PATFVPESKRLNVLLREFRANHNHMAIVIDE-YGGVAGLVTIEDVLEQIVG 127 (136)
T ss_dssp GG----TCB--CCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHTTC--
T ss_pred HH----HcC--CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence 88 584 4889999999999999999999999999998 8999999999999988764
No 22
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.77 E-value=1.7e-18 Score=140.54 Aligned_cols=125 Identities=12% Similarity=0.232 Sum_probs=106.6
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v 281 (351)
..+|+++|++. .++.++++++++.+|++.|.+++++++||+|++.|+++|+||.+|+++.+.... ...++
T Consensus 2 ~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~--------~~~~v 71 (127)
T 3nqr_A 2 DQRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA--------EAFSM 71 (127)
T ss_dssp -CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC--------CCCCH
T ss_pred CcCHHHhcccH--HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC--------CCCCH
Confidence 36789999943 448899999999999999999999999999873279999999999988774332 35577
Q ss_pred cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.+ +|. +++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus 72 ~~----~m~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~g 126 (127)
T 3nqr_A 72 DK----VLR--TAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG 126 (127)
T ss_dssp HH----HCB--CCCEEETTCBHHHHHHHHHHTTCCEEEEECT-TSCEEEEEEHHHHHHHC--
T ss_pred HH----HcC--CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence 88 574 4779999999999999999999999999998 8999999999999998753
No 23
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.76 E-value=7e-18 Score=144.50 Aligned_cols=127 Identities=11% Similarity=0.145 Sum_probs=109.0
Q ss_pred CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278 (351)
Q Consensus 199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~ 278 (351)
.+...+|+++|++. .+++++++++++.+|++.|.+++++++||+|++.++++|+||.+|+++.+..+ ..
T Consensus 38 ~l~~~~v~diM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~---------~~ 106 (172)
T 3lhh_A 38 RLDERTISSLMVPR--SDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG---------ER 106 (172)
T ss_dssp -----CTTTTSEEG--GGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT---------CC
T ss_pred ccCCCCHHHhCccH--HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhc---------Cc
Confidence 36678999999954 55889999999999999999999999999987227999999999999987543 24
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.++.+ +| ++++++.+++++.+++++|.+++++.+||+|+ +|+++|+||..||++.+.+
T Consensus 107 ~~v~~----im--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 107 LELVD----LV--KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE-YGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp CCGGG----GC--BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHT
T ss_pred ccHHH----Hh--cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC-CCCEEEEeeHHHHHHHHhC
Confidence 57888 57 68889999999999999999999999999998 8999999999999998865
No 24
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.76 E-value=4.9e-18 Score=137.93 Aligned_cols=124 Identities=13% Similarity=0.206 Sum_probs=109.8
Q ss_pred CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCc
Q 018713 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (351)
Q Consensus 201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~ 280 (351)
...+++++|. +++.++++++++.+|++.|.+++++++||+|+ |+++|+||.+|+++.+.++.. ...+
T Consensus 3 ~s~~v~~~m~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~-------~~~~ 69 (128)
T 3gby_A 3 ASVTFSYLAE----TDYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPT-------VKEK 69 (128)
T ss_dssp TTCBGGGGCB----CCSCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCC-------TTCB
T ss_pred cceEHHHhhc----CCcceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCc-------ccCc
Confidence 4578999999 55999999999999999999999999999987 599999999999987754321 2356
Q ss_pred ccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
+.+ +|. ++++++.+++++.++++.|.+++.+++||+|+ +|+++|+||..||++.+.+
T Consensus 70 v~~----~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 70 LGE----ELL-ETVRSYRPGEQLFDNLISVAAAKCSVVPLADE-DGRYEGVVSRKRILGFLAE 126 (128)
T ss_dssp CCG----GGC-BCCCCBCTTSBGGGSHHHHHHCSSSEEEEECT-TCBEEEEEEHHHHHHHHHT
T ss_pred HHH----Hcc-CCCcEECCCCCHHHHHHHHHhCCCcEEEEECC-CCCEEEEEEHHHHHHHHHh
Confidence 888 586 88899999999999999999999999999997 8999999999999998865
No 25
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.75 E-value=4.2e-18 Score=142.87 Aligned_cols=126 Identities=14% Similarity=0.251 Sum_probs=110.5
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEE-cCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVv-d~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~ 278 (351)
+...+|+++|++. .++.++++++++.+|++.|.+++++++||+ ++++|+++|+||.+|+++.+... ..
T Consensus 17 l~~~~v~~iM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~---------~~ 85 (153)
T 3oco_A 17 MNDKVASDVMVDR--TSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID---------DK 85 (153)
T ss_dssp HHHCBHHHHSEEG--GGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH---------TT
T ss_pred cCCCEeeeEecch--hheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC---------CC
Confidence 4568999999952 358999999999999999999999999999 64237999999999999887543 14
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.++.+ +| ++++++.+++++.++++.|.+++++.+||+|+ +|+++|+||..||++.+.+
T Consensus 86 ~~v~~----~m--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 86 AKIST----IM--RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE-YGGTSGIITDKDVYEELFG 143 (153)
T ss_dssp SBGGG----TC--BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT-TSCEEEEECHHHHHHHHHC
T ss_pred CcHHH----Hh--CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCCEEEEeeHHHHHHHHhc
Confidence 57888 57 58889999999999999999999999999998 8999999999999998875
No 26
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.75 E-value=1.3e-17 Score=135.93 Aligned_cols=123 Identities=24% Similarity=0.407 Sum_probs=109.0
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v 281 (351)
..+++++|. +++.++++++++.+|++.|.+++++++||+| + |+++|+||..|+++.+..+.. ...++
T Consensus 3 ~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~-------~~~~v 69 (133)
T 2ef7_A 3 EEIVKEYMK----TQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKS-------LETKA 69 (133)
T ss_dssp CCBGGGTSB----CSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCC-------TTCBG
T ss_pred cccHHHhcc----CCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCC-------cccCH
Confidence 468999999 5599999999999999999999999999999 4 699999999999988765432 34678
Q ss_pred cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.+ +|. +++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus 70 ~~----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~ 125 (133)
T 2ef7_A 70 EE----FMT-ASLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAIDD 125 (133)
T ss_dssp GG----TSE-ECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred HH----HcC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHHH
Confidence 88 576 78899999999999999999999999999997 7999999999999988754
No 27
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.75 E-value=1.4e-17 Score=138.83 Aligned_cols=132 Identities=19% Similarity=0.329 Sum_probs=112.4
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
+...+|+++|++. .++.++++++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.+...... ..+.....
T Consensus 12 l~~~~v~~im~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~-~~~~~~~~ 87 (150)
T 3lqn_A 12 FQQIFVKDLMISS--EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAMILDGILGLERI-EFERLEEM 87 (150)
T ss_dssp HHHCBHHHHSEEG--GGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHTBCSSSB-CGGGGGGC
T ss_pred hhcCChhhcccCC--CceEEECCCCcHHHHHHHHHHcCCcEEEEECC-CCCEEEEEEHHHHHHHHHhhccc-chhHHhcC
Confidence 3457999999954 45889999999999999999999999999997 48999999999999988643321 12233567
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
++.+ +|. ++++++.+++++.++++.|.++++ +||+|+ +|+++|+||..||++.+.+
T Consensus 88 ~v~~----~m~-~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~-~g~~~Giit~~dil~~l~~ 143 (150)
T 3lqn_A 88 KVEQ----VMK-QDIPVLKLEDSFAKALEMTIDHPF--ICAVNE-DGYFEGILTRRAILKLLNK 143 (150)
T ss_dssp BGGG----TCB-SSCCEEETTCBHHHHHHHHHHCSE--EEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred CHHH----Hhc-CCCceeCCCCCHHHHHHHHHhCCE--EEEECC-CCcEEEEEEHHHHHHHHHH
Confidence 8888 586 889999999999999999999986 999997 8999999999999998754
No 28
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.74 E-value=2e-17 Score=142.04 Aligned_cols=125 Identities=15% Similarity=0.113 Sum_probs=108.3
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
+...+|+++|++. .+++++++++++.+|++.|.+++++++||+|++.++++|+||.+|+++.+.... ..
T Consensus 33 l~~~~v~diM~~~--~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~---------~~ 101 (173)
T 3ocm_A 33 LAERSIRSIMTPR--TDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG---------RV 101 (173)
T ss_dssp HTTSCSTTTSEEG--GGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS---------SC
T ss_pred cCCCCHHHhCCcH--HHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC---------cc
Confidence 6778999999854 568899999999999999999999999999873379999999999998875321 22
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
++. + + +++++|++++++.+++++|.+++++.+||+|+ +|+++|+||..||++.+.+
T Consensus 102 ~v~-~----~--~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde-~g~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 102 RRN-R----L--RDPIIVHESIGILRLMDTLKRSRGQLVLVADE-FGAIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp CGG-G----S--BCCCEECGGGCHHHHHHHHHHSTTCCEEEECT-TCCEEEEECHHHHHHHHHC
T ss_pred hhH-h----c--CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-CCCEEEEEeHHHHHHHHhC
Confidence 344 3 3 57789999999999999999999999999998 8999999999999999875
No 29
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.74 E-value=2.3e-17 Score=136.12 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=107.8
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCC--CEEEEEeHHHHHHHhhcCCCCchhhhhccCc
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP--DIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g--~liGiIt~~dil~~l~~~~~~~~l~~l~~~~ 280 (351)
.+++++|. +++.++++++++.+|++.|.+++++++||+|++ + +++|+||.+|+++.+..+.. ...+
T Consensus 5 ~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~-------~~~~ 72 (141)
T 2rih_A 5 IRTSELLK----RPPVSLPETATIREVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLD-------LDGP 72 (141)
T ss_dssp CBGGGGCC----SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCC-------TTSB
T ss_pred eEHHHHhc----CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCC-------CCCC
Confidence 67899999 569999999999999999999999999999984 7 89999999999998765422 3567
Q ss_pred ccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
+.+ +|. +++++++++ ++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+..
T Consensus 73 v~~----~m~-~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~ 128 (141)
T 2rih_A 73 AMP----IAN-SPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFERAI 128 (141)
T ss_dssp SGG----GCB-CCCEEETTS-BHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCHHH
T ss_pred HHH----HcC-CCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-CCcEEEEEEHHHHHHHHHH
Confidence 888 586 889999999 9999999999999999999997 8999999999999865543
No 30
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.74 E-value=4.1e-17 Score=133.84 Aligned_cols=125 Identities=18% Similarity=0.307 Sum_probs=109.1
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH-HhhcCCCCchhhhhcc
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-GLEGCKGRDWFDIIAS 278 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~-~l~~~~~~~~l~~l~~ 278 (351)
+...+++++|. +++.++++++++.+|++.|.+++++.+||+|+ +|+++|+||..|+++ .+..+. ...
T Consensus 4 l~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~-------~~~ 71 (138)
T 2yzi_A 4 DMKAPIKVYMT----KKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVIVPGL-------PYD 71 (138)
T ss_dssp CTTSBGGGTCB----CCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTCC-------CTT
T ss_pred hhhhhHHHHhc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHhcCC-------ccc
Confidence 55688999999 56999999999999999999999999999997 479999999999974 443221 135
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.++.+ +|. ++++++++++++.++++.|.+++.+.+ |+|+ +|+++|+||..||++.+.+
T Consensus 72 ~~v~~----~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~-~g~~~Giit~~dil~~~~~ 129 (138)
T 2yzi_A 72 IPVER----IMT-RNLITANVNTPLGEVLRKMAEHRIKHI-LIEE-EGKIVGIFTLSDLLEASRR 129 (138)
T ss_dssp SBGGG----TCB-CSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred CCHHH----Hhh-CCCeEECCCCcHHHHHHHHHhcCCCEE-EECC-CCCEEEEEEHHHHHHHHHH
Confidence 67888 586 789999999999999999999999999 9997 7999999999999998765
No 31
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.74 E-value=2.8e-17 Score=132.28 Aligned_cols=122 Identities=18% Similarity=0.211 Sum_probs=106.9
Q ss_pred chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD 283 (351)
Q Consensus 204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~ 283 (351)
+++++|. +++.++++++++.+|++.|.+++.+++||+| + |+++|+||.+|+++.+.++.. ....++.+
T Consensus 2 ~v~~~m~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~------~~~~~v~~ 69 (125)
T 1pbj_A 2 RVEDVMV----TDVDTIDITASLEDVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDD------LAEVKVWE 69 (125)
T ss_dssp CHHHHCB----CSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCC------TTTSBHHH
T ss_pred CHHHhcC----CCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCc------ccccCHHH
Confidence 6789998 5699999999999999999999999999999 4 799999999999988765421 13567888
Q ss_pred cccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 284 L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
+|. +++.++++++++.++++.|.+++.+.+||+|+ |+++|+||..||++.+.+.
T Consensus 70 ----~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l~~~ 123 (125)
T 1pbj_A 70 ----VME-RDLVTISPRATIKEAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAKMAK 123 (125)
T ss_dssp ----HCB-CGGGEECTTSCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHC--
T ss_pred ----HcC-CCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHHHhc
Confidence 586 78999999999999999999999999999997 9999999999999988765
No 32
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.74 E-value=1.9e-17 Score=135.73 Aligned_cols=126 Identities=25% Similarity=0.436 Sum_probs=109.7
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHH-HHHhhcCCCCchhhhhcc
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAV-VQGLEGCKGRDWFDIIAS 278 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~di-l~~l~~~~~~~~l~~l~~ 278 (351)
+...+++++|+ +++.++++++++.++++.|.+++.+++||+|++ |+++|+||..|+ ++++..... ..
T Consensus 5 l~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~-------~~ 72 (138)
T 2p9m_A 5 LKNIKVKDVMT----KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKYT-------LE 72 (138)
T ss_dssp CTTCBGGGTSB----CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCCC-------SS
T ss_pred cccCCHHHhhc----CCceEECCCCcHHHHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhccc-------CC
Confidence 45688999998 558999999999999999999999999999974 799999999999 887754321 35
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcC-----CCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNN-----IGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~-----~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.++.+ +|. +++.++++++++.++++.|.+++ .+.+||+|+ +|+++|+||..||++.+.+
T Consensus 73 ~~v~~----~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 73 TTIGD----VMT-KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK-NNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp CBHHH----HSC-SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred cCHHH----HhC-CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC-CCeEEEEEEHHHHHHHHHh
Confidence 67888 586 78899999999999999999999 999999997 7999999999999988753
No 33
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.73 E-value=4e-17 Score=132.98 Aligned_cols=126 Identities=13% Similarity=0.151 Sum_probs=104.5
Q ss_pred hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (351)
Q Consensus 41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~ 120 (351)
|.+.+++++|. +..+++++++++|+.+|++.|.++++.++||+|++. ++++|+|+..|++..+..
T Consensus 3 l~~~~v~~iM~-~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~~~Givt~~dl~~~~~~------- 67 (130)
T 3i8n_A 3 AQDVPVTQVMT-PRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQK-------DNIIGFVHRLELFKMQQS------- 67 (130)
T ss_dssp ----CCTTTSC-CBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSST-------TCEEEECCHHHHHHHHHT-------
T ss_pred cCcCCHhhCCC-cHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC-------CcEEEEEEHHHHHHHHhc-------
Confidence 67899999997 446788999999999999999999999999998752 289999999998843211
Q ss_pred hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~ 200 (351)
..
T Consensus 68 ------------------------------------------------------------------------------~~ 69 (130)
T 3i8n_A 68 ------------------------------------------------------------------------------GS 69 (130)
T ss_dssp ------------------------------------------------------------------------------TT
T ss_pred ------------------------------------------------------------------------------CC
Confidence 12
Q ss_pred CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
...++.++|+ . +.++++++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+.
T Consensus 70 ~~~~v~~~m~-~----~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 70 GQKQLGAVMR-P----IQVVLNNTALPKVFDQMMTHRLQLALVVDE-YGTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp TTSBHHHHSE-E----CCEEETTSCHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred CcCCHHHHhc-C----CcCcCCCCcHHHHHHHHHHcCCeEEEEEcC-CCCEEEEEEHHHHHHHHc
Confidence 2467899995 2 679999999999999999999999999998 489999999999998874
No 34
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.73 E-value=3.1e-17 Score=138.39 Aligned_cols=126 Identities=12% Similarity=0.336 Sum_probs=109.5
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
+...+|+++|+ ++ +++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|+++.+..... ....
T Consensus 14 l~~~~v~~im~----~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~------~~~~ 81 (159)
T 3fv6_A 14 LKKLQVKDFQS----IP-VVIHENVSVYDAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQE------LTSV 81 (159)
T ss_dssp HTTCBGGGSCB----CC-CEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSC------TTTC
T ss_pred HhhCCHHHHcC----CC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCc------ccCc
Confidence 44579999998 53 499999999999999999999999999974 899999999999998754321 1456
Q ss_pred cccccccCccCCC--CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCC---eEEEEEeHHHHHHHhcC
Q 018713 280 PISDLGLPFMSSD--EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQK---KIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 280 ~v~~L~~~~m~~~--~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g---~liGiIt~~DIl~~l~~ 343 (351)
++.+ +|. + ++++|.+++++.+|++.|.+++++.+||+|+ +| +++|+||..||++.+.+
T Consensus 82 ~v~~----~m~-~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~~~vGiit~~dil~~l~~ 144 (159)
T 3fv6_A 82 PVHI----IMT-RMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD-TDKGFEVIGRVTKTNMTKILVS 144 (159)
T ss_dssp BGGG----TSE-ETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CSSSEEEEEEEEHHHHHHHHHH
T ss_pred CHHH----HHc-CCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCcceeEEEEEEHHHHHHHHHH
Confidence 7888 586 6 8889999999999999999999999999998 77 99999999999998754
No 35
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.73 E-value=4.8e-17 Score=138.11 Aligned_cols=134 Identities=18% Similarity=0.188 Sum_probs=114.4
Q ss_pred CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhc
Q 018713 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA 277 (351)
Q Consensus 198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~ 277 (351)
..+...+|+++|.+. ..++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.+..... ...
T Consensus 19 ~~l~~~~v~dim~~~-~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~-----~~~ 91 (165)
T 3fhm_A 19 FQGMATFVKDLLDRK-GRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-DGVVLGIFTERDLVKAVAGQGA-----ASL 91 (165)
T ss_dssp CSSSSCBHHHHHHHH-CSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHGG-----GGG
T ss_pred HhhhhcCHHHHhccC-CCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHhcCC-----ccc
Confidence 456678999999941 024889999999999999999999999999997 4899999999999988754310 124
Q ss_pred cCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345 (351)
Q Consensus 278 ~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~ 345 (351)
..++.+ +|. +++++|.+++++.++++.|.+++.+.+||+|+ |+++|+||..||++.+.+..
T Consensus 92 ~~~v~~----~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~~~~ 152 (165)
T 3fhm_A 92 QQSVSV----AMT-KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARIGEI 152 (165)
T ss_dssp TSBGGG----TSB-SSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTTCC-
T ss_pred cCCHHH----Hhc-CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHHH
Confidence 568888 586 88999999999999999999999999999997 99999999999999986643
No 36
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.73 E-value=2.1e-17 Score=137.37 Aligned_cols=134 Identities=16% Similarity=0.244 Sum_probs=108.8
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchh-------h
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF-------D 274 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l-------~ 274 (351)
..+|+++|++. .++.++++++++.+|++.|.+++++++||+|+ +++++|+||..|+++.+........+ .
T Consensus 4 ~~~v~~im~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~ 80 (152)
T 4gqw_A 4 VYTVGEFMTKK--EDLHVVKPTTTVDEALELLVENRITGFPVIDE-DWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS 80 (152)
T ss_dssp CSBGGGTSEES--TTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred eEEhhhccCCC--CCCeEECCCCcHHHHHHHHHHcCCceEEEEeC-CCeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence 46899999953 36999999999999999999999999999998 48999999999998764322111111 1
Q ss_pred hhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 275 ~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
.....++.+ +|. ++++++++++++.++++.|.+++.+.+||+|+ +|+++|+||.+||++.+.+.
T Consensus 81 ~~~~~~v~~----~m~-~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 81 KTNGKLVGD----LMT-PAPLVVEEKTNLEDAAKILLETKYRRLPVVDS-DGKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp ---CCBHHH----HSE-ESCCCEESSSBHHHHHHHHHHSSCCEEEEECT-TSBEEEEEEHHHHHHHHHC-
T ss_pred HhccccHHH----hcC-CCceEECCCCcHHHHHHHHHHCCCCEEEEECC-CCcEEEEEEHHHHHHHHHhc
Confidence 123467788 586 77889999999999999999999999999997 89999999999999998764
No 37
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.72 E-value=1.9e-17 Score=139.43 Aligned_cols=121 Identities=11% Similarity=0.173 Sum_probs=105.8
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
+...+|+++|++. .++.++++++++.+|++.|.+++++++||+|++.++++|+||.+|+++.+..+ ...
T Consensus 35 l~~~~v~diM~~~--~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~---------~~~ 103 (156)
T 3oi8_A 35 FSDLEVRDAMITR--SRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP---------EQF 103 (156)
T ss_dssp HTTCBGGGTCEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG---------GGC
T ss_pred cCCCCHhheeeeH--HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC---------Ccc
Confidence 6678999999953 45899999999999999999999999999997424999999999998876432 245
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl 338 (351)
++.+ +|. +++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..||+
T Consensus 104 ~v~~----im~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~g~~~Givt~~Dil 155 (156)
T 3oi8_A 104 HLKS----ILR--PAVFVPEGKSLTALLKEFREQRNHMAIVIDE-YGGTSGLVTFEDII 155 (156)
T ss_dssp CHHH----HCB--CCCEEETTSBHHHHHHHHHHTTCCEEEEECT-TSSEEEEEEHHHHC
T ss_pred cHHH----HcC--CCEEECCCCCHHHHHHHHHhcCCeEEEEECC-CCCEEEEEEHHHhc
Confidence 6788 574 4889999999999999999999999999998 89999999999986
No 38
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.72 E-value=3.1e-17 Score=133.77 Aligned_cols=126 Identities=21% Similarity=0.366 Sum_probs=106.7
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH-HHhhcCCCCchhhhhcc
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV-QGLEGCKGRDWFDIIAS 278 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil-~~l~~~~~~~~l~~l~~ 278 (351)
+...+++++|. +++.++++++++.++++.|.+++++++||+|+ +|+++|+||..|++ +++..+.. ...
T Consensus 5 ~~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~------~~~ 73 (133)
T 1y5h_A 5 FTMTTARDIMN----AGVTCVGEHETLTAAAQYMREHDIGALPICGD-DDRLHGMLTDRDIVIKGLAAGLD------PNT 73 (133)
T ss_dssp ---CCHHHHSE----ETCCCEETTSBHHHHHHHHHHHTCSEEEEECG-GGBEEEEEEHHHHHHTTGGGTCC------TTT
T ss_pred hhhcCHHHHhc----CCceEeCCCCCHHHHHHHHHHhCCCeEEEECC-CCeEEEEEeHHHHHHHHHhcCCC------ccc
Confidence 34468999999 45899999999999999999999999999987 47999999999998 45544321 134
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.++.+ +|. ++++++++++++.++++.|.+++.+.+||+|+ |+++|+||..||++.+.+
T Consensus 74 ~~v~~----~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l~~ 131 (133)
T 1y5h_A 74 ATAGE----LAR-DSIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHLPE 131 (133)
T ss_dssp SBHHH----HHT-TCCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTCC-
T ss_pred cCHHH----Hhc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence 67888 586 78899999999999999999999999999997 899999999999988754
No 39
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.71 E-value=9.8e-17 Score=141.61 Aligned_cols=121 Identities=12% Similarity=0.286 Sum_probs=108.3
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhC---CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhh
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY---RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII 276 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~---~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l 276 (351)
+...+++++|+ .+++++++++++.+|++.|.++ +++.+||+|+ +++++|+||.+|++...
T Consensus 51 ~~~~~v~~iM~----~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~~------------ 113 (205)
T 3kxr_A 51 YSENEIGRYTD----HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE-ADKYLGTVRRYDIFKHE------------ 113 (205)
T ss_dssp SCTTCGGGGCB----CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT-TCBEEEEEEHHHHTTSC------------
T ss_pred CCcchHHhhcc----CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC-CCeEEEEEEHHHHHhCC------------
Confidence 77889999999 5599999999999999999987 8999999998 48999999999986431
Q ss_pred ccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 277 ~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
...++++ +|. +++++|++++++.++++.|.+++++.+||||+ +|+++|+||..||+..+.+
T Consensus 114 ~~~~v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~-~g~lvGiIT~~Dil~~i~~ 174 (205)
T 3kxr_A 114 PHEPLIS----LLS-EDSRALTANTTLLDAAEAIEHSREIELPVIDD-AGELIGRVTLRAATALVRE 174 (205)
T ss_dssp TTSBGGG----GCC-SSCCCEETTSCHHHHHHHHHTSSCSEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred CcchHHH----Hhc-CCCeEECCCCCHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHH
Confidence 3457888 586 78999999999999999999999999999998 8999999999999988754
No 40
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.71 E-value=3.8e-17 Score=137.16 Aligned_cols=129 Identities=15% Similarity=0.187 Sum_probs=109.8
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v 281 (351)
..+++++|++. .++.++++++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.+..... ....+...++
T Consensus 14 ~~~v~dim~p~--~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~dl~~~~~~~~~--~~~~~~~~~v 88 (156)
T 3ctu_A 14 LGQEETFLTPA--KNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMAYQMEHDL--SQEIMADTDI 88 (156)
T ss_dssp HTTGGGGEEEG--GGCCCEETTSBHHHHHHHHTTCSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTC--CHHHHTTSBG
T ss_pred HHHHHHHcCcc--cCceEECCCCCHHHHHHHHHHCCCceEeEECC-CCEEEEEEcHHHHHHHHHhccc--cccccccCcH
Confidence 46889999965 56899999999999999999999999999997 4899999999999998865321 1122346788
Q ss_pred cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.+ +|. ++++++.+++++.++++.|.+++ .+||+|+ +|+++|+||..||++.+.+
T Consensus 89 ~~----~m~-~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~-~g~~~Giit~~dil~~l~~ 142 (156)
T 3ctu_A 89 VH----MTK-TDVAVVSPDFTITEVLHKLVDES--FLPVVDA-EGIFQGIITRKSILKAVNA 142 (156)
T ss_dssp GG----GCB-CSCCCBCSSCCHHHHHHHTTTSS--EEEEECT-TSBEEEEEETTHHHHHHHH
T ss_pred HH----hcc-CCceeeCCCCcHHHHHHHHHHcC--eEEEEcC-CCeEEEEEEHHHHHHHHHH
Confidence 88 586 88899999999999999999886 6999997 8999999999999998754
No 41
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.71 E-value=1.4e-16 Score=132.64 Aligned_cols=127 Identities=13% Similarity=0.206 Sum_probs=108.3
Q ss_pred HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (351)
Q Consensus 40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~ 119 (351)
.|...+++++|. +..+++++++++|+.+|++.|.++++.++||+|++. ++++|+|+..|++..+...
T Consensus 19 ~l~~~~v~diM~-~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~lvGivt~~dl~~~~~~~----- 85 (148)
T 3lv9_A 19 EFEEKKIREIMV-PRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNK-------DDILGFVHIRDLYNQKINE----- 85 (148)
T ss_dssp GGGTCBGGGTSE-ETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSST-------TSEEEEEEHHHHHHHHHHH-----
T ss_pred ccCCCCHHHccc-cHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCC-------CcEEEEEEHHHHHHHHhcC-----
Confidence 367899999997 334889999999999999999999999999998752 2899999999998543111
Q ss_pred hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 199 (351)
.
T Consensus 86 ------------------------------------------------------------------------------~- 86 (148)
T 3lv9_A 86 ------------------------------------------------------------------------------N- 86 (148)
T ss_dssp ------------------------------------------------------------------------------S-
T ss_pred ------------------------------------------------------------------------------C-
Confidence 1
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
..++.++| .. +.++++++++.++++.|.+++++++||+|+ +|+++|+||..|+++.+..
T Consensus 87 --~~~v~~~m-~~----~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 87 --KIELEEIL-RD----IIYISENLTIDKALERIRKEKLQLAIVVDE-YGGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp --CCCGGGTC-BC----CEEEETTSBHHHHHHHHHHHTCSEEEEECT-TSSEEEEEEHHHHHHHHHH
T ss_pred --CccHHHhc-CC----CeEECCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence 46788899 44 789999999999999999999999999998 4899999999999998854
No 42
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.71 E-value=2.3e-17 Score=139.34 Aligned_cols=128 Identities=16% Similarity=0.272 Sum_probs=105.7
Q ss_pred CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (351)
Q Consensus 44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~ 123 (351)
.++.++|. |..+++++++++|+.+|++.|.+++++++||+|+++ +++|+|+..|++.++.......
T Consensus 15 ~~~~~iM~-P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~--------~lvGiit~~Di~~~~~~~~~~~----- 80 (156)
T 3k6e_A 15 GQEETFLT-PAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEK--------QFVGTIGLRDIMAYQMEHDLSQ----- 80 (156)
T ss_dssp TTGGGGEE-ETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-C--------BEEEEEEHHHHHHHHHHHTCCH-----
T ss_pred ccHHHhCc-chhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCC--------cEEEEEEecchhhhhhhccccc-----
Confidence 46778885 678999999999999999999999999999998653 8999999999997654331000
Q ss_pred cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~ 203 (351)
......
T Consensus 81 --------------------------------------------------------------------------~~~~~~ 86 (156)
T 3k6e_A 81 --------------------------------------------------------------------------EIMADT 86 (156)
T ss_dssp --------------------------------------------------------------------------HHHTTS
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 012346
Q ss_pred chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
+|.++|. +++.++++++++.+|++.|.+++ .+||+|+ +|+++|+||++|+++.+..
T Consensus 87 ~v~~im~----~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~-~g~l~GiiT~~Dil~~~~~ 142 (156)
T 3k6e_A 87 DIVHMTK----TDVAVVSPDFTITEVLHKLVDES--FLPVVDA-EGIFQGIITRKSILKAVNA 142 (156)
T ss_dssp BGGGTCB----CSCCCBCTTCCHHHHHHHTTTSS--EEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred CHHHhhc----CCceecccccHHHHHHHHHHHcC--CeEEEec-CCEEEEEEEHHHHHHHHHH
Confidence 8999999 66999999999999999998765 4999998 4899999999999998843
No 43
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.71 E-value=1.9e-16 Score=129.45 Aligned_cols=128 Identities=13% Similarity=0.264 Sum_probs=106.4
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~ 282 (351)
.+|+++|++. .+++.++++++++.+|++.|.+++++++||+| + |+++|+||..|+++.+.... . .....++.
T Consensus 6 ~~v~~im~~~-~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~-~----~~~~~~v~ 77 (135)
T 2rc3_A 6 KTVKHLLQEK-GHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLD-K----PVKDTQVK 77 (135)
T ss_dssp CBHHHHHHHH-CCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSS-S----CGGGSBGG
T ss_pred eeHHHHHhcC-CCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcC-C----CcccCCHH
Confidence 3799999821 02388999999999999999999999999998 3 69999999999987543221 1 01456788
Q ss_pred ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345 (351)
Q Consensus 283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~ 345 (351)
+ +|. ++++++++++++.++++.|.+++.+.+||+|+ |+++|+||..||++.+.+..
T Consensus 78 ~----~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--g~~~Giit~~dll~~~~~~~ 133 (135)
T 2rc3_A 78 E----IMT-RQVAYVDLNNTNEDCMALITEMRVRHLPVLDD--GKVIGLLSIGDLVKDAISQH 133 (135)
T ss_dssp G----TSB-CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHC--
T ss_pred H----hcc-CCCeEECCCCcHHHHHHHHHHhCCCEEEEEeC--CEEEEEEEHHHHHHHHHhcc
Confidence 8 586 78899999999999999999999999999995 89999999999999886653
No 44
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.71 E-value=9.5e-17 Score=133.83 Aligned_cols=121 Identities=19% Similarity=0.303 Sum_probs=106.2
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~ 282 (351)
.+|+++|.+. .++.++++++++.+|++.|.+++++++||+|++ |+++|+||..|+++.+..+.. ....++.
T Consensus 28 ~~v~dim~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~------~~~~~v~ 98 (149)
T 3k2v_A 28 LRVNDIMHTG--DEIPHVGLQATLRDALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVD------MRDASIA 98 (149)
T ss_dssp SBGGGTSBCG--GGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSC------CTTCBHH
T ss_pred cCHHHHhcCC--CCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCC------cccCcHH
Confidence 6899999941 259999999999999999999999999999974 899999999999998865432 1456788
Q ss_pred ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (351)
Q Consensus 283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~ 339 (351)
+ +|. +++++|++++++.++++.|.+++.+.+||+|+ ++++|+||..||++
T Consensus 99 ~----~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~Giit~~dil~ 148 (149)
T 3k2v_A 99 D----VMT-RGGIRIRPGTLAVDALNLMQSRHITCVLVADG--DHLLGVVHMHDLLR 148 (149)
T ss_dssp H----HSE-ESCCEECTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHTC
T ss_pred H----HcC-CCCeEECCCCCHHHHHHHHHHcCCCEEEEecC--CEEEEEEEHHHhhc
Confidence 8 586 78899999999999999999999999999998 49999999999874
No 45
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.71 E-value=1.3e-16 Score=133.71 Aligned_cols=133 Identities=14% Similarity=0.283 Sum_probs=110.4
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
+...+|+++|.+. .++.++++++++.+|++.|.+++++++||+|+ +|+++|+||..|+++.+...... ........
T Consensus 8 l~~~~v~~im~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~-~~~~~~~~ 83 (157)
T 2emq_A 8 FMQMTVKPFLIPA--DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-SYKLHGLISMTMMMDAILGLERI-EFERLETM 83 (157)
T ss_dssp --CCBSTTTCEEG--GGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT-TCCEEEEEEHHHHHHHSBCSSSB-CGGGGGTC
T ss_pred HhhCcHHhhccCC--ccceEECCCCcHHHHHHHHHHCCceEEEEEcC-CCCEEEEeeHHHHHHHHhccccc-chHHhcCC
Confidence 5568999999852 25889999999999999999999999999997 48999999999999887543211 11223466
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
++.+ +|. ++++++++++++.++++.|.++++ +||+|+ +|+++|+||..||++.+.+.
T Consensus 84 ~v~~----~m~-~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~-~g~~~Giit~~dil~~~~~~ 140 (157)
T 2emq_A 84 KVEE----VMN-RNIPRLRLDDSLMKAVGLIVNHPF--VCVEND-DGYFAGIFTRREVLKQLNKQ 140 (157)
T ss_dssp BGGG----TCB-CCCCEEETTSBHHHHHHHHHHSSE--EEEECS-SSSEEEEEEHHHHHHHHHHT
T ss_pred cHHH----HhC-CCCceecCCCcHHHHHHHHhhCCE--EEEEcC-CCeEEEEEEHHHHHHHHHHH
Confidence 7888 586 789999999999999999999987 999997 89999999999999887543
No 46
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.71 E-value=3.1e-17 Score=133.84 Aligned_cols=126 Identities=10% Similarity=0.153 Sum_probs=103.7
Q ss_pred CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (351)
Q Consensus 44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~ 123 (351)
++++++|. +.++++++++++|+.+|++.|.++++.++||++++. ++++|+|+..|++.++...
T Consensus 2 ~~v~~iM~-~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~-------~~lvGivt~~dl~~~~~~~--------- 64 (130)
T 3hf7_A 2 VSVNDIMV-PRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSL-------DDAISMLRVREAYRLMTEK--------- 64 (130)
T ss_dssp CBHHHHSE-EGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSG-------GGEEEEEEHHHHHHHHTSS---------
T ss_pred cCHHHhCc-cHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCC-------CcEEEEEEHHHHHHHHhcc---------
Confidence 56778885 335789999999999999999999999999997542 3899999999998542110
Q ss_pred cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~ 203 (351)
......
T Consensus 65 --------------------------------------------------------------------------~~~~~~ 70 (130)
T 3hf7_A 65 --------------------------------------------------------------------------KEFTKE 70 (130)
T ss_dssp --------------------------------------------------------------------------SCCCHH
T ss_pred --------------------------------------------------------------------------Cccchh
Confidence 112335
Q ss_pred chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
++.++|. ++.++++++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+..
T Consensus 71 ~v~~~m~-----~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 71 IMLRAAD-----EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp HHHHHSB-----CCCEEETTCBHHHHHHHHHHHCCCEEEEECT-TSCEEEEEEHHHHHHHHHC
T ss_pred hHHHhcc-----CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC-CCCEEEEeeHHHHHHHHhC
Confidence 6888884 3678999999999999999999999999998 4899999999999998853
No 47
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.70 E-value=9.5e-17 Score=135.40 Aligned_cols=134 Identities=14% Similarity=0.215 Sum_probs=113.6
Q ss_pred HHHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHh
Q 018713 35 ETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET 114 (351)
Q Consensus 35 ~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~ 114 (351)
..+...|..+++.++|. + ++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..||+.+++..
T Consensus 8 ~~l~~~l~~~~v~~im~---~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~ 75 (159)
T 3fv6_A 8 QLLADKLKKLQVKDFQS---I-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDA--------VLVGVLSRKDLLRASIGQ 75 (159)
T ss_dssp HHHHHHHTTCBGGGSCB---C-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTS--------CEEEEEEHHHHHHHHTSC
T ss_pred HHHHHHHhhCCHHHHcC---C-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCC--------cEEEEEeHHHHHHHhhcc
Confidence 45677889999999996 3 45999999999999999999999999999653 899999999998543111
Q ss_pred hHHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHh
Q 018713 115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVI 194 (351)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 194 (351)
T Consensus 76 -------------------------------------------------------------------------------- 75 (159)
T 3fv6_A 76 -------------------------------------------------------------------------------- 75 (159)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCC---CEEEEEeHHHHHHHhhc
Q 018713 195 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP---DIKNYITQSAVVQGLEG 266 (351)
Q Consensus 195 ~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g---~liGiIt~~dil~~l~~ 266 (351)
......++.++|.+. .++.++.+++++.+|++.|.+++++++||+|++ | +++|+||.+||++++.+
T Consensus 76 ---~~~~~~~v~~~m~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~~~~~vGiit~~dil~~l~~ 144 (159)
T 3fv6_A 76 ---QELTSVPVHIIMTRM--PNITVCRREDYVMDIAKHLIEKQIDALPVIKDT-DKGFEVIGRVTKTNMTKILVS 144 (159)
T ss_dssp ---SCTTTCBGGGTSEET--TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEEC-SSSEEEEEEEEHHHHHHHHHH
T ss_pred ---CcccCcCHHHHHcCC--CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCC-CcceeEEEEEEHHHHHHHHHH
Confidence 123457899999942 258999999999999999999999999999984 7 89999999999998854
No 48
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.70 E-value=1.1e-16 Score=135.34 Aligned_cols=130 Identities=17% Similarity=0.296 Sum_probs=107.9
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch--hhhhccC
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--FDIIASQ 279 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~--l~~l~~~ 279 (351)
..+|+++|. +++.++.+++++.+|++.|.+++++.+||+|+ +|+++|+||..|+++++........ .......
T Consensus 4 ~~~v~dim~----~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~ 78 (160)
T 2o16_A 4 MIKVEDMMT----RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFET 78 (160)
T ss_dssp CCBGGGTSE----ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC---------CCC
T ss_pred cCcHHHHhc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHhhcccccccchhccc
Confidence 468999999 45899999999999999999999999999997 4899999999999988753210000 0112356
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
++.+ +|. +++++|++++++.+|++.|.+++.+.+||+|+ |+++|+||..||++.+.+
T Consensus 79 ~v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGiit~~dil~~~~~ 135 (160)
T 2o16_A 79 PLFE----VMH-TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAIN 135 (160)
T ss_dssp BHHH----HSC-SCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHH
T ss_pred CHHH----Hhc-CCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence 7888 586 88999999999999999999999999999997 999999999999987643
No 49
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.70 E-value=1.6e-16 Score=133.76 Aligned_cols=132 Identities=17% Similarity=0.290 Sum_probs=111.0
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
+...+|+++|.+. .++.++.+++++.+|++.|.+++++++||+|++ |+++|+||..|+++.+...... ........
T Consensus 11 l~~~~v~~im~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~-~~~~~~~~ 86 (159)
T 1yav_A 11 LLEATVGQFMIEA--DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERI-EFEKLDQI 86 (159)
T ss_dssp CTTCBHHHHSEEG--GGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSB-CGGGTTTS
T ss_pred HhHhhHHHHhCCc--cceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhccc-chhhhccC
Confidence 5568999999951 258999999999999999999999999999984 7999999999999988653211 11223466
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
++.+ +|. ++++++.+++++.++++.|.++++ +||+|+ +|+++|+||..||++.+.+
T Consensus 87 ~v~~----~m~-~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~-~g~~vGiit~~dil~~~~~ 142 (159)
T 1yav_A 87 TVEE----VML-TDIPRLHINDPIMKGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELNK 142 (159)
T ss_dssp BHHH----HSB-CSCCEEETTSBHHHHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred CHHH----hcC-CCCceEcCCCCHHHHHHHHHhCCE--EEEEeC-CCeEEEEEEHHHHHHHHHH
Confidence 7888 586 788999999999999999998876 999997 7999999999999988754
No 50
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.70 E-value=7.3e-17 Score=143.14 Aligned_cols=159 Identities=13% Similarity=0.146 Sum_probs=100.9
Q ss_pred ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713 45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV 124 (351)
Q Consensus 45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~ 124 (351)
.+.++|. ++++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..|+..
T Consensus 14 ~~~~~~~---~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~--------~l~Givt~~dl~~--------------- 67 (213)
T 1vr9_A 14 KVKKWVT---QDFPMVEESATVRECLHRMRQYQTNECIVKDREG--------HFRGVVNKEDLLD--------------- 67 (213)
T ss_dssp BGGGGCB---SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTS--------BEEEEEEGGGGTT---------------
T ss_pred CHHHhhc---CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCC--------EEEEEEEHHHHHh---------------
Confidence 3445554 7889999999999999999999999999998643 8999999877661
Q ss_pred ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713 125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT 204 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~ 204 (351)
.....+
T Consensus 68 --------------------------------------------------------------------------~~~~~~ 73 (213)
T 1vr9_A 68 --------------------------------------------------------------------------LDLDSS 73 (213)
T ss_dssp --------------------------------------------------------------------------SCTTSB
T ss_pred --------------------------------------------------------------------------hcCCCc
Confidence 012357
Q ss_pred hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccccc
Q 018713 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL 284 (351)
Q Consensus 205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L 284 (351)
+.++|+ +++.++++++++.++++.|.+++++++||+|++ |+++|+||.+|+++.+..... ..+
T Consensus 74 v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~Dil~~~~~~~~-----------~~~- 136 (213)
T 1vr9_A 74 VFNKVS----LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALIEALA-----------MDV- 136 (213)
T ss_dssp SGGGCB----CTTCCEETTSBHHHHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHHHSCC---------------
T ss_pred HHHHcc----CCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHHhc-----------CCC-
Confidence 899999 559999999999999999999999999999984 899999999999998754321 111
Q ss_pred ccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeC
Q 018713 285 GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG 323 (351)
Q Consensus 285 ~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~ 323 (351)
.+..-.+.+.....++.++.+.|.+++++.++|++.
T Consensus 137 ---~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~ 172 (213)
T 1vr9_A 137 ---PGIRFSVLLEDKPGELRKVVDALALSNINILSVITT 172 (213)
T ss_dssp ---------------------------------------
T ss_pred ---CcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEE
Confidence 111001111133346999999999999999998754
No 51
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.69 E-value=1.3e-16 Score=131.49 Aligned_cols=129 Identities=18% Similarity=0.265 Sum_probs=106.2
Q ss_pred CCcCchHh---hhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhh
Q 018713 200 FKSTTVRS---IIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII 276 (351)
Q Consensus 200 ~~~~~V~d---im~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l 276 (351)
+...++++ +|. +++.++++++++.+|++.|.+++++++||+|++ |+++|+||..|+++.+..+.. ..
T Consensus 5 ~~~~~v~~~~~~~~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-----~~ 74 (144)
T 2nyc_A 5 FLKIPIGDLNIITQ----DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIY-----ND 74 (144)
T ss_dssp GGGSBGGGSSCCBC----SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC---------
T ss_pred hhhcchhhcCCCCC----CCceEECCCCcHHHHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhccccc-----cc
Confidence 34467778 777 568999999999999999999999999999974 899999999999988754310 01
Q ss_pred ccCcccccccCccCCC-----CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 277 ASQPISDLGLPFMSSD-----EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 277 ~~~~v~~L~~~~m~~~-----~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
...++.+ +|... +++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus 75 ~~~~v~~----~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 75 LSLSVGE----ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp CCSBHHH----HHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred CCccHHH----HHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEHHHHHHHHHh
Confidence 3456777 46422 6889999999999999999999999999997 8999999999999998754
No 52
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.69 E-value=7.6e-17 Score=138.06 Aligned_cols=132 Identities=14% Similarity=0.224 Sum_probs=107.1
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCC------------
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR------------ 270 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~------------ 270 (351)
.+|+++|++. .++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++........
T Consensus 4 ~~v~dim~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 80 (180)
T 3sl7_A 4 YTVGDFMTPR--QNLHVVKPSTSVDDALELLVEKKVTGLPVIDD-NWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS 80 (180)
T ss_dssp CBHHHHSEEG--GGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHTCC-------------------
T ss_pred eeHHHhcCCC--CCceeeCCCCcHHHHHHHHHHcCCCeEEEECC-CCeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence 5789999952 25999999999999999999999999999998 48999999999998543111000
Q ss_pred --c-------hhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713 271 --D-------WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341 (351)
Q Consensus 271 --~-------~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l 341 (351)
. .+......++.+ +|. +++++|++++++.+|+++|.+++++.+||+|+ +|+++|+||..||++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~----~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~~ 154 (180)
T 3sl7_A 81 TWKTFNELQKLISKTYGKVVGD----LMT-PSPLVVRDSTNLEDAARLLLETKFRRLPVVDA-DGKLIGILTRGNVVRAA 154 (180)
T ss_dssp CCCSHHHHHHHHHTTTTCBHHH----HSE-ESCCCEETTSBHHHHHHHHTTSTTCEEEEECT-TCBEEEEEEHHHHHHHH
T ss_pred hhhhhHHHHHHHhccccccHHH----HhC-CCceEeCCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHH
Confidence 0 001123567778 586 77889999999999999999999999999997 89999999999999887
Q ss_pred cC
Q 018713 342 LK 343 (351)
Q Consensus 342 ~~ 343 (351)
.+
T Consensus 155 ~~ 156 (180)
T 3sl7_A 155 LQ 156 (180)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 53
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.69 E-value=1.5e-16 Score=133.82 Aligned_cols=133 Identities=20% Similarity=0.238 Sum_probs=109.9
Q ss_pred CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCE-EEEEcCCCCCEEEEEeHHHHHHHhhcC-----CCCc
Q 018713 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN-VPIIEPGTPDIKNYITQSAVVQGLEGC-----KGRD 271 (351)
Q Consensus 198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~-vpVvd~~~g~liGiIt~~dil~~l~~~-----~~~~ 271 (351)
..+...+|+++|+ +++.++++++++.+|++.|.+++++. +||+|+ + +++|+||..|+++++... ....
T Consensus 11 ~~~~~~~v~~im~----~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-~-~~vGivt~~dl~~~~~~~~~~~~~~~~ 84 (157)
T 1o50_A 11 HHMKVKDVCKLIS----LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-N-KLVGMIPVMHLLKVSGFHFFGFIPKEE 84 (157)
T ss_dssp TTCBHHHHTTSSC----CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-T-EEEEEEEHHHHHHHHHHHHHCCCC---
T ss_pred hhhccccHhhccc----CCCceECCCCCHHHHHHHHHhCCCCccEEEEEC-C-EEEEEEEHHHHHHHHhhhHHhhhccHH
Confidence 3456678999999 56999999999999999999999999 999997 4 999999999999875310 0000
Q ss_pred h----hhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 272 W----FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 272 ~----l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
. .......++.+ +|. + ++++++++++.+|++.|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus 85 ~~~~~~~~~~~~~v~~----im~-~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dll~~l~~ 153 (157)
T 1o50_A 85 LIRSSMKRLIAKNASE----IML-D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALWK 153 (157)
T ss_dssp ----CCCCCSSCBHHH----HCB-C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHH----HcC-C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC-CCEEEEEEEHHHHHHHHHH
Confidence 0 01124567778 586 6 899999999999999999999999999997 7999999999999998764
No 54
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.69 E-value=2.3e-16 Score=136.29 Aligned_cols=125 Identities=14% Similarity=0.265 Sum_probs=109.4
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~ 282 (351)
.+|+++|+ ++++++++++++.+|++.|.+++++++||+|++ |+++|+||.+|+++.+..... .....++.
T Consensus 9 ~~v~~im~----~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~-----~~~~~~v~ 78 (184)
T 1pvm_A 9 MRVEKIMN----SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNK-----KPDEVPIR 78 (184)
T ss_dssp CBGGGTSB----TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCC-----CGGGSBGG
T ss_pred cCHHHhcC----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhccc-----CcccCCHH
Confidence 78999999 569999999999999999999999999999874 799999999999988753211 01356788
Q ss_pred ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
+ +|. ++++++.+++++.+++++|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus 79 ~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 79 L----VMR-KPIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp G----TSB-SSCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTSCH
T ss_pred H----HhC-CCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHHh
Confidence 8 586 78899999999999999999999999999998 8999999999999987654
No 55
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.69 E-value=2.6e-16 Score=134.69 Aligned_cols=127 Identities=12% Similarity=0.155 Sum_probs=105.4
Q ss_pred HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (351)
Q Consensus 40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~ 119 (351)
.|...++.++|. +.++++++++++|+.+|++.|.++++.++||+|++. ++++|+|+..||+.++..
T Consensus 38 ~l~~~~v~diM~-~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~-------~~lvGivt~~dl~~~~~~------ 103 (172)
T 3lhh_A 38 RLDERTISSLMV-PRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNV-------DDMVGIISAKQLLSESIA------ 103 (172)
T ss_dssp -----CTTTTSE-EGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSST-------TSEEEEEEHHHHHHHHHT------
T ss_pred ccCCCCHHHhCc-cHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC-------CeEEEEEEHHHHHHHHhh------
Confidence 467899999996 446789999999999999999999999999998751 289999999998843210
Q ss_pred hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 199 (351)
T Consensus 104 -------------------------------------------------------------------------------- 103 (172)
T 3lhh_A 104 -------------------------------------------------------------------------------- 103 (172)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
....++.++| +. +.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+..
T Consensus 104 ~~~~~v~~im-~~----~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 104 GERLELVDLV-KN----CNFVPNSLSGMELLEHFRTTGSQMVFVVDE-YGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp TCCCCGGGGC-BC----CEEEETTCCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHT
T ss_pred cCcccHHHHh-cC----CeEeCCCCCHHHHHHHHHHcCCeEEEEEeC-CCCEEEEeeHHHHHHHHhC
Confidence 1246789999 44 889999999999999999999999999998 4899999999999999864
No 56
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.67 E-value=6.3e-17 Score=131.24 Aligned_cols=124 Identities=12% Similarity=0.197 Sum_probs=102.0
Q ss_pred cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (351)
Q Consensus 43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~ 122 (351)
+.+++++|. +.++++++++++|+.+|++.|.++++.++||+|++. ++++|+|+..|++..+
T Consensus 2 ~~~v~diM~-~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~~vGivt~~dl~~~~----------- 62 (127)
T 3nqr_A 2 DQRVRDIMI-PRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK-------DHIEGILMAKDLLPFM----------- 62 (127)
T ss_dssp -CBHHHHSE-EGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSST-------TCEEEEEEGGGGGGGG-----------
T ss_pred CcCHHHhcc-cHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCC-------CcEEEEEEHHHHHHHH-----------
Confidence 467788886 224588999999999999999999999999998752 2899999998877211
Q ss_pred ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~ 202 (351)
. .....
T Consensus 63 ------------------------------------------------------------------------~--~~~~~ 68 (127)
T 3nqr_A 63 ------------------------------------------------------------------------R--SDAEA 68 (127)
T ss_dssp ------------------------------------------------------------------------S--TTCCC
T ss_pred ------------------------------------------------------------------------h--ccCCC
Confidence 0 11235
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
.+++++|+ + +.++++++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+.
T Consensus 69 ~~v~~~m~----~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 69 FSMDKVLR----T-AVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIV 125 (127)
T ss_dssp CCHHHHCB----C-CCEEETTCBHHHHHHHHHHTTCCEEEEECT-TSCEEEEEEHHHHHHHC-
T ss_pred CCHHHHcC----C-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence 68899996 3 578999999999999999999999999998 489999999999998863
No 57
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.67 E-value=2.9e-16 Score=125.84 Aligned_cols=119 Identities=20% Similarity=0.312 Sum_probs=102.3
Q ss_pred ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713 45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV 124 (351)
Q Consensus 45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~ 124 (351)
+++++|. ++++++++++|+.+|++.|.++++..+||+|+++ +++|+|+..|++.++..
T Consensus 2 ~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~G~vt~~dl~~~~~~----------- 59 (122)
T 3kpb_A 2 LVKDILS---KPPITAHSNISIMEAAKILIKHNINHLPIVDEHG--------KLVGIITSWDIAKALAQ----------- 59 (122)
T ss_dssp BHHHHCC---SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTS--------BEEEEECHHHHHHHHHT-----------
T ss_pred chHHhhC---CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCC--------CEEEEEEHHHHHHHHHh-----------
Confidence 5677786 5788999999999999999999999999999653 89999999998844211
Q ss_pred ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713 125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT 204 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~ 204 (351)
...+
T Consensus 60 ----------------------------------------------------------------------------~~~~ 63 (122)
T 3kpb_A 60 ----------------------------------------------------------------------------NKKT 63 (122)
T ss_dssp ----------------------------------------------------------------------------TCCB
T ss_pred ----------------------------------------------------------------------------cccC
Confidence 1237
Q ss_pred hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
+.++|. +++.++++++++.++++.|.+++.+++||+|+ +|+++|+||..|+++++.+
T Consensus 64 v~~~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 64 IEEIMT----RNVITAHEDEPVDHVAIKMSKYNISGVPVVDD-YRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp GGGTSB----SSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHC-
T ss_pred HHHHhc----CCCeEECCCCCHHHHHHHHHHhCCCeEEEECC-CCCEEEEEeHHHHHHHhhc
Confidence 889998 55899999999999999999999999999998 4899999999999998854
No 58
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.67 E-value=5.6e-16 Score=130.57 Aligned_cols=131 Identities=16% Similarity=0.216 Sum_probs=106.2
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~-~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~ 278 (351)
....+|+++|. +++.++++++++.+|++.|.+++++++||+|+ ++|+++|+||..|+++.+...... .. ....
T Consensus 10 ~~~~~v~dim~----~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~-~~-~~~~ 83 (164)
T 2pfi_A 10 SHHVRVEHFMN----HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS-RA-PGHQ 83 (164)
T ss_dssp CCSCBHHHHCB----CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC---------CCC
T ss_pred ccCCCHHHHcC----CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc-cC-Cccc
Confidence 45678999999 55999999999999999999999999999986 237999999999999887543210 00 0123
Q ss_pred CcccccccCccCCCC------ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 279 QPISDLGLPFMSSDE------VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~------v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.++.+ +|. .+ ++++.+++++.++++.|.+++.+.+||+|+ |+++|+||..||++.+.+
T Consensus 84 ~~v~~----~m~-~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--g~l~Giit~~dil~~~~~ 147 (164)
T 2pfi_A 84 QCLQD----ILA-RGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR--GRAVGCVSWVEMKKAISN 147 (164)
T ss_dssp CBHHH----HHH-TTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHHHH
T ss_pred chhhh----hhc-ccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence 45666 354 33 789999999999999999999999999995 999999999999988754
No 59
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.67 E-value=5.6e-16 Score=127.05 Aligned_cols=127 Identities=17% Similarity=0.258 Sum_probs=107.7
Q ss_pred hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (351)
Q Consensus 41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~ 120 (351)
|...++.++|. ++++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..|++..++..
T Consensus 4 l~~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~------ 66 (138)
T 2yzi_A 4 DMKAPIKVYMT---KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDG--------NVVGFFTKSDIIRRVIVP------ 66 (138)
T ss_dssp CTTSBGGGTCB---CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS--------CEEEEEEHHHHHHHTTTT------
T ss_pred hhhhhHHHHhc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC--------cEEEEEeHHHHHHHHHhc------
Confidence 56789999997 6889999999999999999999999999998643 899999999987321100
Q ss_pred hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~ 200 (351)
...
T Consensus 67 -----------------------------------------------------------------------------~~~ 69 (138)
T 2yzi_A 67 -----------------------------------------------------------------------------GLP 69 (138)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 112
Q ss_pred CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
...++.++|. .++.++++++++.++++.|.+++++++ |+|+ +|+++|+||..|+++++...
T Consensus 70 ~~~~v~~~m~----~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~-~g~~~Giit~~dil~~~~~~ 130 (138)
T 2yzi_A 70 YDIPVERIMT----RNLITANVNTPLGEVLRKMAEHRIKHI-LIEE-EGKIVGIFTLSDLLEASRRR 130 (138)
T ss_dssp TTSBGGGTCB----CSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE-TTEEEEEEEHHHHHHHHHCC
T ss_pred ccCCHHHHhh----CCCeEECCCCcHHHHHHHHHhcCCCEE-EECC-CCCEEEEEEHHHHHHHHHHH
Confidence 3468899998 559999999999999999999999999 9997 47999999999999998653
No 60
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.67 E-value=1.6e-16 Score=129.23 Aligned_cols=124 Identities=17% Similarity=0.228 Sum_probs=103.1
Q ss_pred ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA 121 (351)
Q Consensus 42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~ 121 (351)
.+.+++++|. +..+++++++++|+.+|++.|.++++.++||+|++. ++++|+|+..|++.++
T Consensus 3 ~~~~v~diM~-~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~~~Givt~~dl~~~~---------- 64 (129)
T 3jtf_A 3 AERTVADIMV-PRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDR-------DNIIGILLAKDLLRYM---------- 64 (129)
T ss_dssp -CCBHHHHCE-EGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSST-------TCEEEEEEGGGGGGGG----------
T ss_pred CCCCHHHhCc-cHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-------CcEEEEEEHHHHHhHh----------
Confidence 4678888886 345788999999999999999999999999998742 2899999998877210
Q ss_pred hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713 122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK 201 (351)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~ 201 (351)
. ..
T Consensus 65 -------------------------------------------------------------------------~----~~ 67 (129)
T 3jtf_A 65 -------------------------------------------------------------------------L----EP 67 (129)
T ss_dssp -------------------------------------------------------------------------T----CT
T ss_pred -------------------------------------------------------------------------c----cC
Confidence 0 12
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
..+++++|+ + +.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+|+++.+..
T Consensus 68 ~~~v~~~m~----~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 68 ALDIRSLVR----P-AVFIPEVKRLNVLLREFRASRNHLAIVIDE-HGGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp TSCGGGGCB----C-CCEEETTCBHHHHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHHHH
T ss_pred CcCHHHHhC----C-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence 356888886 3 679999999999999999999999999998 4899999999999998853
No 61
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.67 E-value=7.9e-16 Score=129.17 Aligned_cols=129 Identities=18% Similarity=0.315 Sum_probs=109.2
Q ss_pred CchHhhhhccC--CCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCc
Q 018713 203 TTVRSIIKSYR--WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (351)
Q Consensus 203 ~~V~dim~~~~--~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~ 280 (351)
.+|+++|.+.+ .+++.++++++++.+|++.|.+++++++||.+ +|+++|+||..|+++.+..... .....+
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~-----~~~~~~ 79 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQER-----SSKATR 79 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTC-----CSSSCB
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccC-----CccccC
Confidence 57999998541 03468999999999999999999999999965 3699999999999988754321 013567
Q ss_pred ccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345 (351)
Q Consensus 281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~ 345 (351)
+.+ +|. ++++++.+++++.+++++|.+++.+.+||+|+ |+++|+||..||++.+.+..
T Consensus 80 v~~----~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~l~~~~ 137 (157)
T 4fry_A 80 VEE----IMT-AKVRYVEPSQSTDECMALMTEHRMRHLPVLDG--GKLIGLISIGDLVKSVIADQ 137 (157)
T ss_dssp HHH----HSB-SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTC
T ss_pred HHH----HcC-CCCcEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHHH
Confidence 888 586 78899999999999999999999999999995 99999999999999987654
No 62
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.66 E-value=8e-16 Score=125.97 Aligned_cols=128 Identities=16% Similarity=0.278 Sum_probs=107.4
Q ss_pred HHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHH-HHHHHHhhHH
Q 018713 39 AAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAI-ILWVLETAEL 117 (351)
Q Consensus 39 ~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di-~~~~~~~~~~ 117 (351)
+.|.+.++.++|. ++++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..|+ +.++..
T Consensus 3 ~~l~~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~---- 67 (138)
T 2p9m_A 3 DTLKNIKVKDVMT---KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDEN--------KVIGIVTTTDIGYNLIRD---- 67 (138)
T ss_dssp --CTTCBGGGTSB---CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTC--------BEEEEEEHHHHHHHHTTT----
T ss_pred cccccCCHHHhhc---CCceEECCCCcHHHHHHHHHHCCCcEEEEECCCC--------eEEEEEEHHHHHHHHHhh----
Confidence 4567899999996 5788999999999999999999999999998653 89999999998 632100
Q ss_pred HhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhc
Q 018713 118 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE 197 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 197 (351)
T Consensus 68 -------------------------------------------------------------------------------- 67 (138)
T 2p9m_A 68 -------------------------------------------------------------------------------- 67 (138)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYR-----LRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~-----~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
......++.++|. +++.++++++++.++++.|.+++ ++++||+|+ +|+++|+||..|+++++.+
T Consensus 68 ~~~~~~~v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 68 KYTLETTIGDVMT----KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK-NNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp CCCSSCBHHHHSC----SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred cccCCcCHHHHhC----CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC-CCeEEEEEEHHHHHHHHHh
Confidence 1134568999998 55899999999999999999999 999999997 4799999999999988753
No 63
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.66 E-value=2e-16 Score=132.50 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=108.0
Q ss_pred HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceeccee-cCCCCCCCccccceeeEeeHHHHHHHHHHhhHHH
Q 018713 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVK-IPDAPSSSDWKERYLGIVDYSAIILWVLETAELA 118 (351)
Q Consensus 40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVv-d~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~ 118 (351)
.|.+.+++++|. +..+++++++++|+.+|++.|.++++.++||+ +++. ++++|+|+..||+.++...
T Consensus 16 ~l~~~~v~~iM~-~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~-------~~lvGivt~~dl~~~~~~~---- 83 (153)
T 3oco_A 16 EMNDKVASDVMV-DRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDK-------DKIIGYAYNYDIVRQARID---- 83 (153)
T ss_dssp HHHHCBHHHHSE-EGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEE-------EEEEEEEEHHHHHHHHHHH----
T ss_pred ccCCCEeeeEec-chhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCC-------CcEEEEEEHHHHHhHHhcC----
Confidence 457899999996 23478999999999999999999999999999 6532 3899999999998543211
Q ss_pred hhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcC
Q 018713 119 AAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEE 198 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 198 (351)
T Consensus 84 -------------------------------------------------------------------------------- 83 (153)
T 3oco_A 84 -------------------------------------------------------------------------------- 83 (153)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
...++.++| +. +.++.+++++.++++.|.+++++++||+|+ +|+++|+||..|+++.+..
T Consensus 84 --~~~~v~~~m-~~----~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 84 --DKAKISTIM-RD----IVSVPENMKVPDVMEEMSAHRVPMAIVIDE-YGGTSGIITDKDVYEELFG 143 (153)
T ss_dssp --TTSBGGGTC-BC----CEEEETTSBHHHHHHHHHHTTCSCEEEECT-TSCEEEEECHHHHHHHHHC
T ss_pred --CCCcHHHHh-CC----CeEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCCEEEEeeHHHHHHHHhc
Confidence 146788999 44 889999999999999999999999999998 4899999999999999864
No 64
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.66 E-value=9.6e-16 Score=131.86 Aligned_cols=137 Identities=10% Similarity=0.195 Sum_probs=109.2
Q ss_pred CCcCchHhhhhccCCCCcEEe--cCCCCHHHHHHHHHhCCCCEEEEE--cCCCCCEEEEEeHHHHHHHhhcCCCC--ch-
Q 018713 200 FKSTTVRSIIKSYRWAPFLPV--ATDDSMLSVLLLLSKYRLRNVPII--EPGTPDIKNYITQSAVVQGLEGCKGR--DW- 272 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v--~~~~sl~ea~~~m~~~~~~~vpVv--d~~~g~liGiIt~~dil~~l~~~~~~--~~- 272 (351)
....+|+++|++....+++++ .+++++.+|++.|.+++++++||+ |+ +|+++|+||..|+++.+...... ..
T Consensus 8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~-~~~lvGiit~~dl~~~~~~~~~~~~~~~ 86 (185)
T 2j9l_A 8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE-SQRLVGFVLRRDLIISIENARKKQDGVV 86 (185)
T ss_dssp -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT-TCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC-CCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence 456899999994311126788 999999999999999999999999 56 48999999999999887532100 00
Q ss_pred ---------------hhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHH
Q 018713 273 ---------------FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337 (351)
Q Consensus 273 ---------------l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DI 337 (351)
.......++.+ +|. +++++|.+++++.+|++.|.+++.+.+||+|+ |+++|+||..||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~--g~~vGiit~~dl 159 (185)
T 2j9l_A 87 STSIIYFTEHSPPLPPYTPPTLKLRN----ILD-LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN--GRLLGIITKKDV 159 (185)
T ss_dssp TTCEEECSSSCCCCCTTCCCCEECGG----GEE-SSCCEEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHH
T ss_pred ccceeecccCCcccccccccCccHHH----hhC-cCCeEeCCCCCHHHHHHHHHhCCCcEEEEEEC--CEEEEEEEHHHH
Confidence 00113456777 586 78999999999999999999999999999995 999999999999
Q ss_pred HHHhcCc
Q 018713 338 RHLLLKP 344 (351)
Q Consensus 338 l~~l~~~ 344 (351)
++.+.+.
T Consensus 160 l~~l~~~ 166 (185)
T 2j9l_A 160 LKHIAQM 166 (185)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987643
No 65
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.66 E-value=1.5e-16 Score=130.74 Aligned_cols=126 Identities=15% Similarity=0.183 Sum_probs=103.1
Q ss_pred cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (351)
Q Consensus 43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~ 122 (351)
+.++.++|. +.++++++++++|+.+|++.|.++++.++||+|++. ++++|+|+..||+.++..
T Consensus 2 ~~~v~~iM~-~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~-------~~~vGivt~~dl~~~~~~--------- 64 (136)
T 3lfr_A 2 DLQVRDIMV-PRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESH-------DDVLGVLLAKDLLPLILK--------- 64 (136)
T ss_dssp -CBHHHHSE-EGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSST-------TCEEEEEEGGGGGGGGGS---------
T ss_pred CCChHhccc-cHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCC-------CcEEEEEEHHHHHHHHHh---------
Confidence 467788886 345788999999999999999999999999998752 289999999888732100
Q ss_pred ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~ 202 (351)
.....
T Consensus 65 ---------------------------------------------------------------------------~~~~~ 69 (136)
T 3lfr_A 65 ---------------------------------------------------------------------------ADGDS 69 (136)
T ss_dssp ---------------------------------------------------------------------------SSGGG
T ss_pred ---------------------------------------------------------------------------ccCCC
Confidence 11234
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
.++.++|+ + +.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+..
T Consensus 70 ~~v~~~m~----~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~~ 127 (136)
T 3lfr_A 70 DDVKKLLR----P-ATFVPESKRLNVLLREFRANHNHMAIVIDE-YGGVAGLVTIEDVLEQIVG 127 (136)
T ss_dssp CCGGGTCB----C-CCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHTTC--
T ss_pred cCHHHHcC----C-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence 67899996 3 789999999999999999999999999998 4899999999999988754
No 66
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.66 E-value=3e-16 Score=127.32 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=105.6
Q ss_pred ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA 121 (351)
Q Consensus 42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~ 121 (351)
.+++++++|. +++.++++++++.+|++.|.++++.++||+|+ + +++|+|+..|++..+
T Consensus 3 ~s~~v~~~m~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~--------~~~Givt~~dl~~~~---------- 60 (128)
T 3gby_A 3 ASVTFSYLAE---TDYPVFTLGGSTADAARRLAASGCACAPVLDG-E--------RYLGMVHLSRLLEGR---------- 60 (128)
T ss_dssp TTCBGGGGCB---CCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-T--------EEEEEEEHHHHHTTC----------
T ss_pred cceEHHHhhc---CCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-C--------EEEEEEEHHHHHHHH----------
Confidence 4688999997 67889999999999999999999999999997 3 899999999988210
Q ss_pred hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713 122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK 201 (351)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~ 201 (351)
.. ....
T Consensus 61 -------------------------------------------------------------------------~~-~~~~ 66 (128)
T 3gby_A 61 -------------------------------------------------------------------------KG-WPTV 66 (128)
T ss_dssp -------------------------------------------------------------------------SS-SCCT
T ss_pred -------------------------------------------------------------------------hh-CCcc
Confidence 00 1112
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
..++.++|. +++.++++++++.++++.|.+++.+++||+|+ +|+++|+||..|+++++.+
T Consensus 67 ~~~v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 67 KEKLGEELL----ETVRSYRPGEQLFDNLISVAAAKCSVVPLADE-DGRYEGVVSRKRILGFLAE 126 (128)
T ss_dssp TCBCCGGGC----BCCCCBCTTSBGGGSHHHHHHCSSSEEEEECT-TCBEEEEEEHHHHHHHHHT
T ss_pred cCcHHHHcc----CCCcEECCCCCHHHHHHHHHhCCCcEEEEECC-CCCEEEEEEHHHHHHHHHh
Confidence 257899998 55889999999999999999999999999997 4899999999999998853
No 67
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.66 E-value=8.7e-16 Score=125.05 Aligned_cols=126 Identities=18% Similarity=0.341 Sum_probs=107.2
Q ss_pred hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (351)
Q Consensus 41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~ 120 (351)
|.+.+++++|. ++++++++++|+.+|++.|.++++.++||+| ++ +++|+|+..|++.++...
T Consensus 1 l~~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~--------~~~Givt~~dl~~~~~~~------ 62 (133)
T 2ef7_A 1 MEEEIVKEYMK---TQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GN--------KPVGIITERDIVKAIGKG------ 62 (133)
T ss_dssp CCCCBGGGTSB---CSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TT--------EEEEEEEHHHHHHHHHTT------
T ss_pred CCcccHHHhcc---CCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CC--------EEEEEEcHHHHHHHHhcC------
Confidence 35788999997 5788999999999999999999999999999 43 899999999988442111
Q ss_pred hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~ 200 (351)
..
T Consensus 63 ------------------------------------------------------------------------------~~ 64 (133)
T 2ef7_A 63 ------------------------------------------------------------------------------KS 64 (133)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------CC
Confidence 12
Q ss_pred CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
...++.++|. +++.++++++++.++++.|.+++.+++||+|+ +|+++|+||..|+++++...
T Consensus 65 ~~~~v~~~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~~ 126 (133)
T 2ef7_A 65 LETKAEEFMT----ASLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAIDDM 126 (133)
T ss_dssp TTCBGGGTSE----ECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHH
T ss_pred cccCHHHHcC----CCCEEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHHHH
Confidence 2467899998 45899999999999999999999999999997 48999999999999988543
No 68
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.65 E-value=1.2e-16 Score=133.12 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=109.8
Q ss_pred HHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHH
Q 018713 39 AAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA 118 (351)
Q Consensus 39 ~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~ 118 (351)
..|..+++.++|. +.++++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..||+.++......
T Consensus 10 ~~l~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~--------~~~Givt~~dl~~~~~~~~~~- 79 (150)
T 3lqn_A 10 DEFQQIFVKDLMI-SSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMY--------KLHGLISTAMILDGILGLERI- 79 (150)
T ss_dssp HHHHHCBHHHHSE-EGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC--------BEEEEEEHHHHHHHTBCSSSB-
T ss_pred HhhhcCChhhccc-CCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCC--------CEEEEEEHHHHHHHHHhhccc-
Confidence 4567899999996 235689999999999999999999999999998753 899999999998543211000
Q ss_pred hhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcC
Q 018713 119 AAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEE 198 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 198 (351)
. ..
T Consensus 80 --------------------------------------------------------------------~---------~~ 82 (150)
T 3lqn_A 80 --------------------------------------------------------------------E---------FE 82 (150)
T ss_dssp --------------------------------------------------------------------C---------GG
T ss_pred --------------------------------------------------------------------c---------hh
Confidence 0 01
Q ss_pred CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
.....++.++|. +++.++++++++.++++.|.++++ +||+|+ +|+++|+||..|+++++...
T Consensus 83 ~~~~~~v~~~m~----~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~-~g~~~Giit~~dil~~l~~~ 144 (150)
T 3lqn_A 83 RLEEMKVEQVMK----QDIPVLKLEDSFAKALEMTIDHPF--ICAVNE-DGYFEGILTRRAILKLLNKK 144 (150)
T ss_dssp GGGGCBGGGTCB----SSCCEEETTCBHHHHHHHHHHCSE--EEEECT-TCBEEEEEEHHHHHHHHHHH
T ss_pred HHhcCCHHHHhc----CCCceeCCCCCHHHHHHHHHhCCE--EEEECC-CCcEEEEEEHHHHHHHHHHH
Confidence 123578999999 558999999999999999999886 999997 48999999999999998643
No 69
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.65 E-value=8.7e-16 Score=123.48 Aligned_cols=121 Identities=13% Similarity=0.130 Sum_probs=102.6
Q ss_pred ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713 45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV 124 (351)
Q Consensus 45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~ 124 (351)
+++++|. ++++++++++|+.+|++.|.++++..+||+| ++ +++|+|+..|++.++...
T Consensus 2 ~v~~~m~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~--------~~~G~it~~dl~~~~~~~---------- 59 (125)
T 1pbj_A 2 RVEDVMV---TDVDTIDITASLEDVLRNYVENAKGSSVVVK-EG--------VRVGIVTTWDVLEAIAEG---------- 59 (125)
T ss_dssp CHHHHCB---CSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TT--------EEEEEEEHHHHHHHHHHT----------
T ss_pred CHHHhcC---CCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CC--------eeEEEEeHHHHHHHHhcC----------
Confidence 5667776 5788999999999999999999999999999 43 899999999988443211
Q ss_pred ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713 125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT 204 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~ 204 (351)
......+
T Consensus 60 -------------------------------------------------------------------------~~~~~~~ 66 (125)
T 1pbj_A 60 -------------------------------------------------------------------------DDLAEVK 66 (125)
T ss_dssp -------------------------------------------------------------------------CCTTTSB
T ss_pred -------------------------------------------------------------------------CcccccC
Confidence 1134578
Q ss_pred hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
+.++|. +++.++++++++.++++.|.+++++++||+|+ |+++|+||.+|+++++..
T Consensus 67 v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 67 VWEVME----RDLVTISPRATIKEAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAKMA 122 (125)
T ss_dssp HHHHCB----CGGGEECTTSCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHC-
T ss_pred HHHHcC----CCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence 999998 45999999999999999999999999999986 599999999999998854
No 70
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.65 E-value=1.7e-15 Score=126.54 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=99.5
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCC----
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS---- 291 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~---- 291 (351)
++.++.+++++.+|++.|.+++++.+||+|++ |+++|+||.+|+++.+..... . ....++.+ +|..
T Consensus 30 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-~~~vGivt~~dl~~~~~~~~~-~----~~~~~v~~----~m~~~~~~ 99 (152)
T 2uv4_A 30 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTY-N----NLDVSVTK----ALQHRSHY 99 (152)
T ss_dssp SCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-SBEEEEEEHHHHHHHHHCSSC-C----CTTSBGGG----GGGTCCHH
T ss_pred CceEeCCCCcHHHHHHHHHHcCCceEeEECCC-CcEEEEEeHHHHHHHhcchhh-h----hhcchHHH----HHhhhhcc
Confidence 37889999999999999999999999999974 899999999999988764321 0 02456777 4631
Q ss_pred -CCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 292 -DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 292 -~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
++++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus 100 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~l~~ 151 (152)
T 2uv4_A 100 FEGVLKCYLHETLETIINRLVEAEVHRLVVVDE-NDVVKGIVSLSDILQALVL 151 (152)
T ss_dssp HHTCSEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHC-
T ss_pred cCCCeEECCCCcHHHHHHHHHHcCCeEEEEECC-CCeEEEEEEHHHHHHHHHh
Confidence 57889999999999999999999999999998 8999999999999998754
No 71
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.65 E-value=9e-16 Score=131.71 Aligned_cols=126 Identities=15% Similarity=0.106 Sum_probs=105.9
Q ss_pred HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (351)
Q Consensus 40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~ 119 (351)
.|...++.++|. +.++++++++++|+.+|++.|.++++.++||+|++.+ +++|+|+..||+.++...
T Consensus 32 ~l~~~~v~diM~-~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-------~lvGivt~~Dl~~~~~~~----- 98 (173)
T 3ocm_A 32 TLAERSIRSIMT-PRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLD-------EVVGIGRAKDLVADLITE----- 98 (173)
T ss_dssp HHTTSCSTTTSE-EGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTT-------SEEEEEEHHHHHHHHHHH-----
T ss_pred ccCCCCHHHhCC-cHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCC-------CEEEEEEHHHHHHHHhcC-----
Confidence 467899999996 3467899999999999999999999999999986522 899999999998543111
Q ss_pred hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 199 (351)
T Consensus 99 -------------------------------------------------------------------------------- 98 (173)
T 3ocm_A 99 -------------------------------------------------------------------------------- 98 (173)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
...++. |. +++.++++++++.++++.|.+++++.+||+|+ +|+++|+||..|+++.+..
T Consensus 99 -~~~~v~--~~----~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde-~g~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 99 -GRVRRN--RL----RDPIIVHESIGILRLMDTLKRSRGQLVLVADE-FGAIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp -SSCCGG--GS----BCCCEECGGGCHHHHHHHHHHSTTCCEEEECT-TCCEEEEECHHHHHHHHHC
T ss_pred -CcchhH--hc----CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-CCCEEEEEeHHHHHHHHhC
Confidence 124556 44 34789999999999999999999999999998 4899999999999999864
No 72
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.64 E-value=1.1e-15 Score=138.76 Aligned_cols=136 Identities=14% Similarity=0.155 Sum_probs=106.3
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CCCEEEEEeHHHHHHHhhcCC---CC---c-
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCK---GR---D- 271 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~-~g~liGiIt~~dil~~l~~~~---~~---~- 271 (351)
....+|+++|+ ++++++.+++++.+|.++|.+++++++||+|++ +++++|+||++||++++.... .. .
T Consensus 10 ~~~~~v~diMt----~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~ 85 (250)
T 2d4z_A 10 KYNIQVGDIMV----RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAA 85 (250)
T ss_dssp CSSCBTTSSSB----SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCC
T ss_pred cCCCChHHhcC----CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhh
Confidence 45678999999 569999999999999999999999999999873 258999999999998764210 00 0
Q ss_pred -------------------------hhh----------------------------------------------------
Q 018713 272 -------------------------WFD---------------------------------------------------- 274 (351)
Q Consensus 272 -------------------------~l~---------------------------------------------------- 274 (351)
+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (250)
T 2d4z_A 86 AEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVAS 165 (250)
T ss_dssp CCBCCC--------------------------------------------------------------------------
T ss_pred hcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCc
Confidence 000
Q ss_pred ----------------hhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 018713 275 ----------------IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338 (351)
Q Consensus 275 ----------------~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl 338 (351)
.....++. |.-.+|+ +.+++|.++++|.++..+|...+++++||++. |+|+|+||++||+
T Consensus 166 ~~~~~i~~~~~~~~~~~~l~~~Vd-l~~~~md-~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~--GrLVGIVTrkDl~ 241 (250)
T 2d4z_A 166 RFEEMLTLEEIYRWEQREKNVVVN-FETCRID-QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM--GKLVGVVALAEIQ 241 (250)
T ss_dssp -CCSCCBHHHHHHHHHHHTTCBCC-TTSSCEE-CCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHH
T ss_pred ccccccChhhhhhHHHHhcCceec-ccccccc-CCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC--CEEEEEEEHHHHH
Confidence 00111110 0001576 88899999999999999999999999999986 9999999999999
Q ss_pred HHhcC
Q 018713 339 HLLLK 343 (351)
Q Consensus 339 ~~l~~ 343 (351)
+++.+
T Consensus 242 kai~~ 246 (250)
T 2d4z_A 242 AAIEG 246 (250)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 99864
No 73
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.64 E-value=6.8e-16 Score=128.16 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=107.9
Q ss_pred ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA 121 (351)
Q Consensus 42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~ 121 (351)
..++++++|. +..+++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..||+.++.....
T Consensus 3 ~~~~v~~im~-~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~G~vt~~dl~~~~~~~~~----- 68 (152)
T 4gqw_A 3 GVYTVGEFMT-KKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDW--------KLVGLVSDYDLLALDSGDST----- 68 (152)
T ss_dssp CCSBGGGTSE-ESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTC--------BEEEEEEHHHHTTCC----C-----
T ss_pred ceEEhhhccC-CCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCC--------eEEEEEEHHHHHHhhcccCc-----
Confidence 4578999996 233789999999999999999999999999999753 89999999999843211100
Q ss_pred hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713 122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK 201 (351)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~ 201 (351)
...+...........
T Consensus 69 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 83 (152)
T 4gqw_A 69 -----------------------------------------------------------------WKTFNAVQKLLSKTN 83 (152)
T ss_dssp -----------------------------------------------------------------CHHHHHHHTC-----
T ss_pred -----------------------------------------------------------------ccchHHHHHHHHHhc
Confidence 000000000001234
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
..++.++|. +++.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++++.+.
T Consensus 84 ~~~v~~~m~----~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 84 GKLVGDLMT----PAPLVVEEKTNLEDAAKILLETKYRRLPVVDS-DGKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp CCBHHHHSE----ESCCCEESSSBHHHHHHHHHHSSCCEEEEECT-TSBEEEEEEHHHHHHHHHC-
T ss_pred cccHHHhcC----CCceEECCCCcHHHHHHHHHHCCCCEEEEECC-CCcEEEEEEHHHHHHHHHhc
Confidence 578999999 44889999999999999999999999999997 48999999999999998653
No 74
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.64 E-value=1.1e-15 Score=138.08 Aligned_cols=131 Identities=14% Similarity=0.292 Sum_probs=101.7
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhh-------
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD------- 274 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~------- 274 (351)
..+|+++|+ +++.++++++++.+|++.|.+++++++||+|+ +|+++|+||..|+++.+........+.
T Consensus 6 ~~~v~~im~----~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 3l2b_A 6 KLKVEDLEM----DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-NNHLLGMLSTSNITATYMDIWDSNILAKSATSLD 80 (245)
T ss_dssp CCBGGGSCC----BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHH
T ss_pred cCcHHHhcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHH
Confidence 468999999 55999999999999999999999999999998 489999999999999875432110000
Q ss_pred h-------------------------------------------------------------------------------
Q 018713 275 I------------------------------------------------------------------------------- 275 (351)
Q Consensus 275 ~------------------------------------------------------------------------------- 275 (351)
.
T Consensus 81 ~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a 160 (245)
T 3l2b_A 81 NILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELA 160 (245)
T ss_dssp HHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHH
T ss_pred HHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence 0
Q ss_pred ---------------------hccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeH
Q 018713 276 ---------------------IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSI 334 (351)
Q Consensus 276 ---------------------l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~ 334 (351)
....++++ +|+++++.++++++++.+++++|.+++++++||+|+ +|+++|+||.
T Consensus 161 ~~~~~~~i~t~~d~~~~~~~~~~~~~v~~----im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~ 235 (245)
T 3l2b_A 161 KKNNITVITTPHDSFTASRLIVQSLPVDY----VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE-NNKVVGSIAR 235 (245)
T ss_dssp HHHTCEEEECSSCHHHHHHHGGGGSBHHH----HSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEEC
T ss_pred HHcCCeEEEeCCChHHHHHHHhcCCceee----EecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC-CCeEEEEEEH
Confidence 01233445 573267889999999999999999999999999998 8999999999
Q ss_pred HHHHHHhc
Q 018713 335 RDIRHLLL 342 (351)
Q Consensus 335 ~DIl~~l~ 342 (351)
+|+++...
T Consensus 236 ~dll~~~~ 243 (245)
T 3l2b_A 236 FHLISTHK 243 (245)
T ss_dssp C-------
T ss_pred HHhhchhh
Confidence 99998754
No 75
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.64 E-value=2.4e-15 Score=123.81 Aligned_cols=134 Identities=10% Similarity=0.138 Sum_probs=104.6
Q ss_pred ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA 121 (351)
Q Consensus 42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~ 121 (351)
.+.++.+++....++++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..|++.++....
T Consensus 6 ~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~~------ 71 (144)
T 2nyc_A 6 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG--------YLINVYEAYDVLGLIKGGI------ 71 (144)
T ss_dssp GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC--------BEEEEEEHHHHHHHHHTC-------
T ss_pred hhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCC--------cEEEEEcHHHHHHHhcccc------
Confidence 45677774332337889999999999999999999999999998653 8999999999985432110
Q ss_pred hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713 122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK 201 (351)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~ 201 (351)
....
T Consensus 72 ----------------------------------------------------------------------------~~~~ 75 (144)
T 2nyc_A 72 ----------------------------------------------------------------------------YNDL 75 (144)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred ----------------------------------------------------------------------------cccC
Confidence 0123
Q ss_pred cCchHhhhhccCC--CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 202 STTVRSIIKSYRW--APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 202 ~~~V~dim~~~~~--~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
..++.++|.+.+. .++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+|+++++..
T Consensus 76 ~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 76 SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp CSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred CccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEHHHHHHHHHh
Confidence 4678898874200 15889999999999999999999999999997 4899999999999998854
No 76
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.64 E-value=9.1e-16 Score=127.83 Aligned_cols=122 Identities=10% Similarity=0.139 Sum_probs=103.3
Q ss_pred cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (351)
Q Consensus 43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~ 122 (351)
.++++++|. +.++++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..||+..+...
T Consensus 27 ~~~v~dim~-~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~-------- 89 (149)
T 3k2v_A 27 LLRVNDIMH-TGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDM--------NIIGIFTDGDLRRVFDTG-------- 89 (149)
T ss_dssp TSBGGGTSB-CGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTC--------BEEEEEEHHHHHHHHCSS--------
T ss_pred ccCHHHHhc-CCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCC--------cEEEEecHHHHHHHHhcC--------
Confidence 369999996 222789999999999999999999999999999653 899999999998432110
Q ss_pred ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~ 202 (351)
.....
T Consensus 90 ---------------------------------------------------------------------------~~~~~ 94 (149)
T 3k2v_A 90 ---------------------------------------------------------------------------VDMRD 94 (149)
T ss_dssp ---------------------------------------------------------------------------SCCTT
T ss_pred ---------------------------------------------------------------------------CCccc
Confidence 11345
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~ 262 (351)
.++.++|. .++.++++++++.++++.|.+++++++||+|++ +++|+||.+|+++
T Consensus 95 ~~v~~~m~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~Giit~~dil~ 148 (149)
T 3k2v_A 95 ASIADVMT----RGGIRIRPGTLAVDALNLMQSRHITCVLVADGD--HLLGVVHMHDLLR 148 (149)
T ss_dssp CBHHHHSE----ESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT--EEEEEEEHHHHTC
T ss_pred CcHHHHcC----CCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC--EEEEEEEHHHhhc
Confidence 78999999 458999999999999999999999999999974 9999999999864
No 77
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.64 E-value=1.9e-15 Score=126.98 Aligned_cols=140 Identities=12% Similarity=0.103 Sum_probs=109.8
Q ss_pred hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCcee-cceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILS-APVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (351)
Q Consensus 41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~-~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~ 119 (351)
+...++.++|. ++++++++++|+.+|++.|.++++.. +||+|++ +++|+|+..||+.++.... .
T Consensus 13 ~~~~~v~~im~---~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~---------~~vGivt~~dl~~~~~~~~--~- 77 (157)
T 1o50_A 13 MKVKDVCKLIS---LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN---------KLVGMIPVMHLLKVSGFHF--F- 77 (157)
T ss_dssp CBHHHHTTSSC---CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT---------EEEEEEEHHHHHHHHHHHH--H-
T ss_pred hccccHhhccc---CCCceECCCCCHHHHHHHHHhCCCCccEEEEECC---------EEEEEEEHHHHHHHHhhhH--H-
Confidence 45677889996 68999999999999999999999999 9999864 7999999999997654221 0
Q ss_pred hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 199 (351)
..+ . ....+... ...
T Consensus 78 ~~~-----------------------~---------------------------------------~~~~~~~~---~~~ 92 (157)
T 1o50_A 78 GFI-----------------------P---------------------------------------KEELIRSS---MKR 92 (157)
T ss_dssp CCC-----------------------C----------------------------------------------C---CCC
T ss_pred hhh-----------------------c---------------------------------------cHHHHHHH---HHH
Confidence 000 0 00000000 012
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
....++.++|. + ++++++++++.+|++.|.+++++++||+|+ +|+++|+||..|+++++.+
T Consensus 93 ~~~~~v~~im~----~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dll~~l~~ 153 (157)
T 1o50_A 93 LIAKNASEIML----D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALWK 153 (157)
T ss_dssp CSSCBHHHHCB----C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred HcCCcHHHHcC----C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC-CCEEEEEEEHHHHHHHHHH
Confidence 34578999999 6 889999999999999999999999999997 4799999999999998864
No 78
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.64 E-value=5.3e-16 Score=131.60 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=109.2
Q ss_pred hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (351)
Q Consensus 41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~ 120 (351)
+..+++.++|....++++++++++|+.+|++.|.++++..+||+|+++ +++|+|+..||+.++....
T Consensus 21 l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~~----- 87 (165)
T 3fhm_A 21 GMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADG--------VVLGIFTERDLVKAVAGQG----- 87 (165)
T ss_dssp SSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS--------CEEEEEEHHHHHHHHHHHG-----
T ss_pred hhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCC--------eEEEEEEHHHHHHHHHhcC-----
Confidence 456777888852114789999999999999999999999999999653 8999999999986543321
Q ss_pred hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~ 200 (351)
...
T Consensus 88 -----------------------------------------------------------------------------~~~ 90 (165)
T 3fhm_A 88 -----------------------------------------------------------------------------AAS 90 (165)
T ss_dssp -----------------------------------------------------------------------------GGG
T ss_pred -----------------------------------------------------------------------------Ccc
Confidence 012
Q ss_pred CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
...++.++|. +++.++.+++++.++++.|.+++++++||+|+ |+++|+||..|+++++...
T Consensus 91 ~~~~v~~~m~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~~~ 151 (165)
T 3fhm_A 91 LQQSVSVAMT----KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARIGE 151 (165)
T ss_dssp GTSBGGGTSB----SSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTTCC
T ss_pred ccCCHHHHhc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHH
Confidence 3468899998 55899999999999999999999999999987 5999999999999998654
No 79
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.63 E-value=1.1e-15 Score=128.65 Aligned_cols=122 Identities=15% Similarity=0.196 Sum_probs=103.2
Q ss_pred HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (351)
Q Consensus 40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~ 119 (351)
.|...+++++|. +..+++++++++|+.+|++.|.++++.++||+|++++ +++|+|+..|++.++
T Consensus 34 ~l~~~~v~diM~-~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~-------~lvGivt~~dl~~~~-------- 97 (156)
T 3oi8_A 34 DFSDLEVRDAMI-TRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKD-------EVLGILHAKDLLKYM-------- 97 (156)
T ss_dssp HHTTCBGGGTCE-EGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTT-------CEEEEEEGGGGGGGS--------
T ss_pred ccCCCCHhheee-eHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCC-------cEEEEEEHHHHHHHH--------
Confidence 467899999996 3347899999999999999999999999999987532 899999998877210
Q ss_pred hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 199 (351)
. .
T Consensus 98 ---------------------------------------------------------------------------~--~- 99 (156)
T 3oi8_A 98 ---------------------------------------------------------------------------F--N- 99 (156)
T ss_dssp ---------------------------------------------------------------------------S--C-
T ss_pred ---------------------------------------------------------------------------H--c-
Confidence 0 0
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil 261 (351)
....++.++|+ + +.++++++++.++++.|.+++++++||+|+ +|+++|+||.+|++
T Consensus 100 ~~~~~v~~im~----~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~g~~~Givt~~Dil 155 (156)
T 3oi8_A 100 PEQFHLKSILR----P-AVFVPEGKSLTALLKEFREQRNHMAIVIDE-YGGTSGLVTFEDII 155 (156)
T ss_dssp GGGCCHHHHCB----C-CCEEETTSBHHHHHHHHHHTTCCEEEEECT-TSSEEEEEEHHHHC
T ss_pred CCcccHHHHcC----C-CEEECCCCCHHHHHHHHHhcCCeEEEEECC-CCCEEEEEEHHHhc
Confidence 03467899996 3 789999999999999999999999999998 48999999999985
No 80
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.63 E-value=1.6e-15 Score=134.43 Aligned_cols=121 Identities=13% Similarity=0.213 Sum_probs=106.1
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~ 279 (351)
.+..+++++|. +++.++.+++++.+|++.|.+++++++||+|++ ++++|+||.+|+++.+ ...
T Consensus 10 ~~~~~~~~~~~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~------------~~~ 72 (213)
T 1vr9_A 10 HHHMKVKKWVT----QDFPMVEESATVRECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLD------------LDS 72 (213)
T ss_dssp ---CBGGGGCB----SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSC------------TTS
T ss_pred ccccCHHHhhc----CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhc------------CCC
Confidence 45578899999 569999999999999999999999999999974 7999999999987554 234
Q ss_pred cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
++.+ +|. ++++++.+++++.++++.|.+++++.+||+|+ +|+++|+||..||++.+..
T Consensus 73 ~v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~Dil~~~~~ 130 (213)
T 1vr9_A 73 SVFN----KVS-LPDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALIE 130 (213)
T ss_dssp BSGG----GCB-CTTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred cHHH----Hcc-CCCEEECCCCcHHHHHHHHHHhCCCEEEEEcC-CCEEEEEEEHHHHHHHHHH
Confidence 6888 586 78899999999999999999999999999998 8999999999999988754
No 81
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.63 E-value=3.2e-15 Score=123.12 Aligned_cols=124 Identities=13% Similarity=0.135 Sum_probs=104.1
Q ss_pred cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (351)
Q Consensus 43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~ 122 (351)
.+++.++|. ++++++++++|+.+|++.|.++++.++||+|+++ ..+++|+|+..|++.++...
T Consensus 4 ~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~------~~~~~Givt~~dl~~~~~~~-------- 66 (141)
T 2rih_A 4 AIRTSELLK---RPPVSLPETATIREVATELAKNRVGLAVLTARDN------PKRPVAVVSERDILRAVAQR-------- 66 (141)
T ss_dssp -CBGGGGCC---SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE------EEEEEEEEEHHHHHHHHHTT--------
T ss_pred ceEHHHHhc---CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC------cceeEEEEEHHHHHHHHhcC--------
Confidence 368899997 6899999999999999999999999999998741 11799999999988543111
Q ss_pred ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~ 202 (351)
....
T Consensus 67 ----------------------------------------------------------------------------~~~~ 70 (141)
T 2rih_A 67 ----------------------------------------------------------------------------LDLD 70 (141)
T ss_dssp ----------------------------------------------------------------------------CCTT
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 1124
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
.++.++|. +++.+++++ ++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+.
T Consensus 71 ~~v~~~m~----~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~ 127 (141)
T 2rih_A 71 GPAMPIAN----SPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFERA 127 (141)
T ss_dssp SBSGGGCB----CCCEEETTS-BHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCHH
T ss_pred CCHHHHcC----CCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-CCcEEEEEEHHHHHHHHH
Confidence 67899998 569999999 9999999999999999999997 489999999999987663
No 82
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.63 E-value=6.3e-16 Score=129.63 Aligned_cols=134 Identities=16% Similarity=0.270 Sum_probs=109.3
Q ss_pred HHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHH
Q 018713 39 AAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA 118 (351)
Q Consensus 39 ~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~ 118 (351)
..|...++.++|. +.++++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..||+.++......
T Consensus 10 ~~l~~~~v~dim~-p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~--------~~~Giit~~dl~~~~~~~~~~- 79 (156)
T 3ctu_A 10 ETFLLGQEETFLT-PAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEK--------QFVGTIGLRDIMAYQMEHDLS- 79 (156)
T ss_dssp HHHHHTTGGGGEE-EGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-C--------BEEEEEEHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHcC-cccCceEECCCCCHHHHHHHHHHCCCceEeEECCCC--------EEEEEEcHHHHHHHHHhcccc-
Confidence 3456688999996 456789999999999999999999999999998653 899999999999665432000
Q ss_pred hhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcC
Q 018713 119 AAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEE 198 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 198 (351)
. .
T Consensus 80 --------------------------------------------------------------------~----------~ 81 (156)
T 3ctu_A 80 --------------------------------------------------------------------Q----------E 81 (156)
T ss_dssp --------------------------------------------------------------------H----------H
T ss_pred --------------------------------------------------------------------c----------c
Confidence 0 0
Q ss_pred CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
.....++.++|. .++.++++++++.++++.|.+++ ++||+|+ +|+++|+||.+|+++++.+.
T Consensus 82 ~~~~~~v~~~m~----~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~-~g~~~Giit~~dil~~l~~~ 143 (156)
T 3ctu_A 82 IMADTDIVHMTK----TDVAVVSPDFTITEVLHKLVDES--FLPVVDA-EGIFQGIITRKSILKAVNAL 143 (156)
T ss_dssp HHTTSBGGGGCB----CSCCCBCSSCCHHHHHHHTTTSS--EEEEECT-TSBEEEEEETTHHHHHHHHH
T ss_pred ccccCcHHHhcc----CCceeeCCCCcHHHHHHHHHHcC--eEEEEcC-CCeEEEEEEHHHHHHHHHHH
Confidence 123478999998 56899999999999999999876 7999997 48999999999999998653
No 83
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.62 E-value=4.9e-15 Score=136.65 Aligned_cols=122 Identities=15% Similarity=0.316 Sum_probs=106.9
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhh
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD 274 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~ 274 (351)
+...+++++|+ .+++++++++++.+|++.|.++ ++.++||+|++ ++++|+||.+|++...
T Consensus 132 ~~~~~v~~iM~----~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~~---------- 196 (278)
T 2yvy_A 132 YEEDEAGGLMT----PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVAD---------- 196 (278)
T ss_dssp SCTTBGGGTCB----SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHHHHHSC----------
T ss_pred CCcchHHhhcC----CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHHHhcCC----------
Confidence 56789999999 4599999999999999999986 78999999984 8999999999997541
Q ss_pred hhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 275 ~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
...++.+ +|. +++++|++++++.++++.|.+++.+.+||||+ +|+++|+||..||+..+.+.
T Consensus 197 --~~~~v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivT~~Dil~~i~~e 258 (278)
T 2yvy_A 197 --PRTRVAE----IMN-PKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLEAE 258 (278)
T ss_dssp --TTCBSTT----TSB-SSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHC---
T ss_pred --CCCcHHH----HhC-CCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC-CCeEEEEEEHHHHHHHHHHH
Confidence 3457888 586 78999999999999999999999999999998 89999999999999987643
No 84
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.62 E-value=2.7e-15 Score=126.62 Aligned_cols=133 Identities=16% Similarity=0.197 Sum_probs=108.0
Q ss_pred ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA 121 (351)
Q Consensus 42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~ 121 (351)
..+++.++|. ++++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..||+.++........
T Consensus 3 ~~~~v~dim~---~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~--------~lvGivt~~dl~~~~~~~~~~~~-- 69 (160)
T 2o16_A 3 LMIKVEDMMT---RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANK--------KLLGIVSQRDLLAAQESSLQRSA-- 69 (160)
T ss_dssp CCCBGGGTSE---ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC--------BEEEEEEHHHHHHHHHHHCC-----
T ss_pred CcCcHHHHhc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC--------cEEEEEeHHHHHHHHHHhhcccc--
Confidence 3578899996 5788999999999999999999999999998643 89999999999966543211000
Q ss_pred hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713 122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK 201 (351)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~ 201 (351)
.......
T Consensus 70 -------------------------------------------------------------------------~~~~~~~ 76 (160)
T 2o16_A 70 -------------------------------------------------------------------------QGDSLAF 76 (160)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------cccchhc
Confidence 0001234
Q ss_pred cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
..++.++|. .++.++++++++.+|++.|.+++++++||+|+ |+++|+||..|+++++..
T Consensus 77 ~~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGiit~~dil~~~~~ 135 (160)
T 2o16_A 77 ETPLFEVMH----TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAIN 135 (160)
T ss_dssp CCBHHHHSC----SCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHH
T ss_pred ccCHHHHhc----CCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence 578999999 56999999999999999999999999999986 599999999999998753
No 85
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.62 E-value=3.9e-15 Score=131.28 Aligned_cols=122 Identities=11% Similarity=0.169 Sum_probs=106.6
Q ss_pred hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHc---CceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHH
Q 018713 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSEC---NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAEL 117 (351)
Q Consensus 41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~---~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~ 117 (351)
+.+.++.++|. .+++++++++|+.+|++.|.++ ++..+||+|+++ +++|+|+..|++.
T Consensus 51 ~~~~~v~~iM~---~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~--------~lvGivt~~dll~-------- 111 (205)
T 3kxr_A 51 YSENEIGRYTD---HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEAD--------KYLGTVRRYDIFK-------- 111 (205)
T ss_dssp SCTTCGGGGCB---CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTC--------BEEEEEEHHHHTT--------
T ss_pred CCcchHHhhcc---CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCC--------eEEEEEEHHHHHh--------
Confidence 45678999997 5899999999999999999997 899999999753 8999999988761
Q ss_pred HhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhc
Q 018713 118 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE 197 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 197 (351)
T Consensus 112 -------------------------------------------------------------------------------- 111 (205)
T 3kxr_A 112 -------------------------------------------------------------------------------- 111 (205)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
.....+++++|+ ++++++++++++.++++.|.+++++.+||+|++ |+++|+||..|+++.+.+.
T Consensus 112 -~~~~~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~-g~lvGiIT~~Dil~~i~~e 175 (205)
T 3kxr_A 112 -HEPHEPLISLLS----EDSRALTANTTLLDAAEAIEHSREIELPVIDDA-GELIGRVTLRAATALVREH 175 (205)
T ss_dssp -SCTTSBGGGGCC----SSCCCEETTSCHHHHHHHHHTSSCSEEEEECTT-SBEEEEEEHHHHHHHHHHH
T ss_pred -CCCcchHHHHhc----CCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHHH
Confidence 123467899998 558999999999999999999999999999984 8999999999999998643
No 86
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.62 E-value=2e-15 Score=139.87 Aligned_cols=122 Identities=15% Similarity=0.338 Sum_probs=108.5
Q ss_pred CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchh
Q 018713 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF 273 (351)
Q Consensus 199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l 273 (351)
.+...+|+++|+ ++++++++++++.+|++.|.++ +++++||+|++ |+++|+||.+|++...
T Consensus 133 ~~~~~~v~~iM~----~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~dll~~~--------- 198 (286)
T 2oux_A 133 HYEDETAGAIMT----TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVND--------- 198 (286)
T ss_dssp TSCTTBHHHHCB----SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSC---------
T ss_pred cCChHHHHHhCC----CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHHHHcCC---------
Confidence 367789999999 5599999999999999999987 88999999984 8999999999997541
Q ss_pred hhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 274 ~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
...++.+ +|. +++++|++++++.++++.|.+++.+.+||||+ +|+++|+||..||+..+.+
T Consensus 199 ---~~~~v~~----im~-~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIT~~Dil~~i~~ 259 (286)
T 2oux_A 199 ---DDTLIAD----ILN-ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVIDD 259 (286)
T ss_dssp ---TTSBHHH----HSB-SCCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred ---CCCcHHH----HcC-CCCeeecCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHHH
Confidence 3457888 586 78999999999999999999999999999998 8999999999999988754
No 87
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.61 E-value=4e-15 Score=124.35 Aligned_cols=133 Identities=12% Similarity=0.197 Sum_probs=105.1
Q ss_pred HHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhH
Q 018713 37 LTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAE 116 (351)
Q Consensus 37 ~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~ 116 (351)
....+..+++.++ ++++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..||+..+....
T Consensus 16 ~~~~l~~~~v~~~-----~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~--------~~vGivt~~dl~~~~~~~~- 81 (152)
T 2uv4_A 16 MSKSLEELQIGTY-----ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG--------RVVDIYSKFDVINLAAEKT- 81 (152)
T ss_dssp HTSBHHHHTCSBC-----SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTS--------BEEEEEEHHHHHHHHHCSS-
T ss_pred HHhhHHHccCCcc-----CCceEeCCCCcHHHHHHHHHHcCCceEeEECCCC--------cEEEEEeHHHHHHHhcchh-
Confidence 3455677888887 3678899999999999999999999999998653 8999999999985432110
Q ss_pred HHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhh
Q 018713 117 LAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQ 196 (351)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 196 (351)
T Consensus 82 -------------------------------------------------------------------------------- 81 (152)
T 2uv4_A 82 -------------------------------------------------------------------------------- 81 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcCchHhhhhccCC--CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 197 EEPFKSTTVRSIIKSYRW--APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 197 ~~~~~~~~V~dim~~~~~--~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
......++.++|..... .++.++.+++++.++++.|.+++++++||+|+ +|+++|+||..|+++++.
T Consensus 82 -~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 82 -YNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDE-NDVVKGIVSLSDILQALV 150 (152)
T ss_dssp -CCCTTSBGGGGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHC
T ss_pred -hhhhcchHHHHHhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence 00123456777741000 24889999999999999999999999999998 489999999999998874
No 88
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.61 E-value=1.1e-15 Score=124.84 Aligned_cols=126 Identities=18% Similarity=0.279 Sum_probs=102.9
Q ss_pred ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713 45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV 124 (351)
Q Consensus 45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~ 124 (351)
+++++|....++++++++++|+.+|++.|.++++.++||+| ++ +++|+|+..||+.++...
T Consensus 7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~--------~~~Givt~~dl~~~~~~~---------- 67 (135)
T 2rc3_A 7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DE--------KLVGILTERDFSRKSYLL---------- 67 (135)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TT--------EEEEEEEHHHHHHHGGGS----------
T ss_pred eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CC--------EEEEEEehHHHHHHHHHc----------
Confidence 66677741125788999999999999999999999999998 42 899999999988432111
Q ss_pred ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713 125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT 204 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~ 204 (351)
.......+
T Consensus 68 ------------------------------------------------------------------------~~~~~~~~ 75 (135)
T 2rc3_A 68 ------------------------------------------------------------------------DKPVKDTQ 75 (135)
T ss_dssp ------------------------------------------------------------------------SSCGGGSB
T ss_pred ------------------------------------------------------------------------CCCcccCC
Confidence 01123568
Q ss_pred hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
+.++|. +++.++++++++.++++.|.+++++++||+| + |+++|+||.+|+++++.+.
T Consensus 76 v~~~m~----~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 76 VKEIMT----RQVAYVDLNNTNEDCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp GGGTSB----CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHC-
T ss_pred HHHhcc----CCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHHHHHHHHhc
Confidence 999998 5589999999999999999999999999999 4 6999999999999988643
No 89
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.61 E-value=9.4e-16 Score=124.86 Aligned_cols=126 Identities=18% Similarity=0.268 Sum_probs=103.3
Q ss_pred hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (351)
Q Consensus 41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~ 120 (351)
+.-+++.++|. ++++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..|++...+..
T Consensus 5 ~~~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~------ 67 (133)
T 1y5h_A 5 FTMTTARDIMN---AGVTCVGEHETLTAAAQYMREHDIGALPICGDDD--------RLHGMLTDRDIVIKGLAA------ 67 (133)
T ss_dssp ---CCHHHHSE---ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGG--------BEEEEEEHHHHHHTTGGG------
T ss_pred hhhcCHHHHhc---CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCC--------eEEEEEeHHHHHHHHHhc------
Confidence 34467888886 5788999999999999999999999999998643 899999999987311100
Q ss_pred hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~ 200 (351)
....
T Consensus 68 ----------------------------------------------------------------------------~~~~ 71 (133)
T 1y5h_A 68 ----------------------------------------------------------------------------GLDP 71 (133)
T ss_dssp ----------------------------------------------------------------------------TCCT
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 0112
Q ss_pred CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
...++.++|. +++.++++++++.++++.|.+++.+++||+|+ |+++|+||.+|+++++.
T Consensus 72 ~~~~v~~~m~----~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l~ 130 (133)
T 1y5h_A 72 NTATAGELAR----DSIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHLP 130 (133)
T ss_dssp TTSBHHHHHT----TCCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTCC
T ss_pred cccCHHHHhc----CCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence 3578999998 55999999999999999999999999999986 59999999999998774
No 90
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.60 E-value=1.5e-15 Score=129.89 Aligned_cols=154 Identities=16% Similarity=0.226 Sum_probs=107.5
Q ss_pred cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (351)
Q Consensus 43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~ 122 (351)
.++++++|. +..+++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..||+............
T Consensus 3 ~~~v~dim~-~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~--------~~~Givt~~dl~~~~~~~~~~~~~-- 71 (180)
T 3sl7_A 3 GYTVGDFMT-PRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNW--------TLVGVVSDYDLLALDSISGRSQND-- 71 (180)
T ss_dssp CCBHHHHSE-EGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC--------BEEEEEEHHHHTCC------------
T ss_pred ceeHHHhcC-CCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCC--------eEEEEEEHHHHHhhhhhccccCCc--
Confidence 356778886 122788999999999999999999999999999753 899999999998432111000000
Q ss_pred ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~ 202 (351)
..+. ....... ....++...+. ....
T Consensus 72 -------------------------------~~~~-------------~~~~~~~-------~~~~~~~~~~~---~~~~ 97 (180)
T 3sl7_A 72 -------------------------------TNLF-------------PDVDSTW-------KTFNELQKLIS---KTYG 97 (180)
T ss_dssp -----------------------------------------------------CC-------CSHHHHHHHHH---TTTT
T ss_pred -------------------------------cccc-------------ccccchh-------hhhHHHHHHHh---cccc
Confidence 0000 0000000 00011111111 2346
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
.++.++|+ +++.++++++++.+|++.|.+++++++||+|+ +|+++|+||++|+++++..
T Consensus 98 ~~v~~~m~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~~~~ 156 (180)
T 3sl7_A 98 KVVGDLMT----PSPLVVRDSTNLEDAARLLLETKFRRLPVVDA-DGKLIGILTRGNVVRAALQ 156 (180)
T ss_dssp CBHHHHSE----ESCCCEETTSBHHHHHHHHTTSTTCEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred ccHHHHhC----CCceEeCCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHHH
Confidence 78999999 44889999999999999999999999999997 4899999999999998854
No 91
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.60 E-value=4.6e-15 Score=124.94 Aligned_cols=135 Identities=13% Similarity=0.211 Sum_probs=105.7
Q ss_pred hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecC-CCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIP-DAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (351)
Q Consensus 41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~-~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~ 119 (351)
+..++++++|. ++++++++++|+.+|++.|.+++++++||+|+ +. ++++|+|+..||+.++.......
T Consensus 10 ~~~~~v~dim~---~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~-------~~~~Givt~~dl~~~~~~~~~~~- 78 (164)
T 2pfi_A 10 SHHVRVEHFMN---HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTES-------QILVGIVQRAQLVQALQAEPPSR- 78 (164)
T ss_dssp CCSCBHHHHCB---CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTT-------CBEEEEEEHHHHHHHHHC------
T ss_pred ccCCCHHHHcC---CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCC-------CEEEEEEEHHHHHHHHHhhcccc-
Confidence 45688889997 57889999999999999999999999999986 22 28999999999985442210000
Q ss_pred hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 199 (351)
..
T Consensus 79 ------------------------------------------------------------------------------~~ 80 (164)
T 2pfi_A 79 ------------------------------------------------------------------------------AP 80 (164)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred CCcCchHhhhhccCC-CC-cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 200 FKSTTVRSIIKSYRW-AP-FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 200 ~~~~~V~dim~~~~~-~~-~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
....++.++|..... .+ +.++.+++++.++++.|.+++.+++||+|+ |+++|+||.+|+++++.+
T Consensus 81 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--g~l~Giit~~dil~~~~~ 147 (164)
T 2pfi_A 81 GHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR--GRAVGCVSWVEMKKAISN 147 (164)
T ss_dssp CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHHHH
T ss_pred cccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence 234578888873200 11 678999999999999999999999999993 699999999999998854
No 92
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.60 E-value=2.2e-15 Score=126.44 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=105.2
Q ss_pred CccccCCCCCC---CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713 44 IPVLSFPNVPG---GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (351)
Q Consensus 44 ~~v~~~~~~~~---~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~ 120 (351)
.+++++|.... ++++++++++|+.+|++.|.++++..+||.+++ +++|+|+..||+.++...
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~---------~~~Givt~~dl~~~~~~~------ 71 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD---------DIAGIVTERDYARKVVLQ------ 71 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSS---------SEEEEEEHHHHHHHSGGG------
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCC---------EEEEEEEHHHHHHHHHhc------
Confidence 34666665333 678999999999999999999999999996532 899999999998543211
Q ss_pred hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~ 200 (351)
....
T Consensus 72 ----------------------------------------------------------------------------~~~~ 75 (157)
T 4fry_A 72 ----------------------------------------------------------------------------ERSS 75 (157)
T ss_dssp ----------------------------------------------------------------------------TCCS
T ss_pred ----------------------------------------------------------------------------cCCc
Confidence 0113
Q ss_pred CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCC
Q 018713 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (351)
Q Consensus 201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~ 268 (351)
...++.++|. +++.++.+++++.++++.|.+++++++||+|+ |+++|+||.+|+++++....
T Consensus 76 ~~~~v~~~m~----~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~l~~~~ 137 (157)
T 4fry_A 76 KATRVEEIMT----AKVRYVEPSQSTDECMALMTEHRMRHLPVLDG--GKLIGLISIGDLVKSVIADQ 137 (157)
T ss_dssp SSCBHHHHSB----SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTC
T ss_pred cccCHHHHcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHHH
Confidence 4578999999 55899999999999999999999999999993 69999999999999987643
No 93
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.60 E-value=5.1e-15 Score=127.81 Aligned_cols=125 Identities=20% Similarity=0.268 Sum_probs=106.2
Q ss_pred cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (351)
Q Consensus 43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~ 122 (351)
.+++.++|. ++++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..||+.++...
T Consensus 8 ~~~v~~im~---~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g--------~~vGivt~~dl~~~~~~~-------- 68 (184)
T 1pvm_A 8 FMRVEKIMN---SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNG--------NDVGLLSERSIIKRFIPR-------- 68 (184)
T ss_dssp CCBGGGTSB---TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTS--------CEEEEEEHHHHHHHTGGG--------
T ss_pred ccCHHHhcC---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC--------cEEEEEeHHHHHHHHhhc--------
Confidence 378899996 6899999999999999999999999999998653 899999999998542110
Q ss_pred ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~ 202 (351)
......
T Consensus 69 --------------------------------------------------------------------------~~~~~~ 74 (184)
T 1pvm_A 69 --------------------------------------------------------------------------NKKPDE 74 (184)
T ss_dssp --------------------------------------------------------------------------CCCGGG
T ss_pred --------------------------------------------------------------------------ccCccc
Confidence 011234
Q ss_pred CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
.++.++|. +++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||..|+++++.
T Consensus 75 ~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Givt~~dll~~~~ 132 (184)
T 1pvm_A 75 VPIRLVMR----KPIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYLS 132 (184)
T ss_dssp SBGGGTSB----SSCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTSC
T ss_pred CCHHHHhC----CCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence 68899998 55899999999999999999999999999998 489999999999987764
No 94
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.59 E-value=8.6e-15 Score=122.57 Aligned_cols=134 Identities=16% Similarity=0.259 Sum_probs=106.3
Q ss_pred HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (351)
Q Consensus 40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~ 119 (351)
.|..+++.++|. +.++++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..|++.++.....
T Consensus 7 ~l~~~~v~~im~-~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~--------~~~Givt~~dl~~~~~~~~~--- 74 (157)
T 2emq_A 7 EFMQMTVKPFLI-PADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSY--------KLHGLISMTMMMDAILGLER--- 74 (157)
T ss_dssp ---CCBSTTTCE-EGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTC--------CEEEEEEHHHHHHHSBCSSS---
T ss_pred hHhhCcHHhhcc-CCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCC--------CEEEEeeHHHHHHHHhcccc---
Confidence 467899999996 223788999999999999999999999999998653 89999999999853211000
Q ss_pred hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 199 (351)
.. ...
T Consensus 75 ------------------------------------------------------------------~~---------~~~ 79 (157)
T 2emq_A 75 ------------------------------------------------------------------IE---------FER 79 (157)
T ss_dssp ------------------------------------------------------------------BC---------GGG
T ss_pred ------------------------------------------------------------------cc---------hHH
Confidence 00 011
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
....++.++|. .++.++++++++.++++.|.++++ +||+|+ +|+++|+||.+|+++++...
T Consensus 80 ~~~~~v~~~m~----~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~-~g~~~Giit~~dil~~~~~~ 140 (157)
T 2emq_A 80 LETMKVEEVMN----RNIPRLRLDDSLMKAVGLIVNHPF--VCVEND-DGYFAGIFTRREVLKQLNKQ 140 (157)
T ss_dssp GGTCBGGGTCB----CCCCEEETTSBHHHHHHHHHHSSE--EEEECS-SSSEEEEEEHHHHHHHHHHT
T ss_pred hcCCcHHHHhC----CCCceecCCCcHHHHHHHHhhCCE--EEEEcC-CCeEEEEEEHHHHHHHHHHH
Confidence 23468899999 569999999999999999999887 999997 48999999999999998654
No 95
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.59 E-value=5e-15 Score=133.72 Aligned_cols=199 Identities=17% Similarity=0.186 Sum_probs=116.1
Q ss_pred cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh-
Q 018713 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA- 121 (351)
Q Consensus 43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~- 121 (351)
..+++++|. ++++++++++++.+|++.|.+++++++||+|+++ +++|+++..||+.++..........
T Consensus 6 ~~~v~~im~---~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~--------~l~Giit~~di~~~~~~~~~~~~~~~ 74 (245)
T 3l2b_A 6 KLKVEDLEM---DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNN--------HLLGMLSTSNITATYMDIWDSNILAK 74 (245)
T ss_dssp CCBGGGSCC---BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTC--------BEEEEEEHHHHHHHHHCCCCTTHHHH
T ss_pred cCcHHHhcC---CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCC--------EEEEEEEHHHHHHHHHHhhhhhhhhh
Confidence 478999997 6789999999999999999999999999999753 8999999999998876532110000
Q ss_pred ----h-----cccccccccccc---------------c----cccccchhhccCCCchhhhhhHHhhhhhh-hhcccccc
Q 018713 122 ----F-----SVGTATAAGVGT---------------G----TVGALGALALGMTGPAAVAGLTVAAAGAA-VAGGLAAE 172 (351)
Q Consensus 122 ----~-----~~~~~~~~~~~~---------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 172 (351)
+ .....-..|... . .......+..|.+ ...........++.. +++|..+.
T Consensus 75 ~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr-~~~~~~~i~~~~~~liit~~~~~~ 153 (245)
T 3l2b_A 75 SATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDR-AEIQAELIELKVSLLIVTGGHTPS 153 (245)
T ss_dssp TTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSC-HHHHHHHHHTTCSEEEECTTCCCC
T ss_pred ccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCC-HHHHHHHHHcCCCEEEECCCCCCC
Confidence 0 000000000000 0 0001111122222 222222222223322 44443221
Q ss_pred cCC--------CCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEE
Q 018713 173 KGA--------GKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII 244 (351)
Q Consensus 173 ~~~--------~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVv 244 (351)
... ...-. +..+...... ......+++++|++ .++.++++++++.++++.|.+++++++||+
T Consensus 154 ~~v~~~a~~~~~~~i~-----t~~d~~~~~~--~~~~~~~v~~im~~---~~~~~~~~~~~~~~~~~~m~~~~~~~~pVv 223 (245)
T 3l2b_A 154 KEIIELAKKNNITVIT-----TPHDSFTASR--LIVQSLPVDYVMTK---DNLVAVSTDDLVEDVKVTMSETRYSNYPVI 223 (245)
T ss_dssp HHHHHHHHHHTCEEEE-----CSSCHHHHHH--HGGGGSBHHHHSBC---TTCCCEETTSBHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHcCCeEEE-----eCCChHHHHH--HHhcCCceeeEecC---CccEEECCCCcHHHHHHHHHhcCCceEEEE
Confidence 100 00000 0011111111 12345789999982 248899999999999999999999999999
Q ss_pred cCCCCCEEEEEeHHHHHHHh
Q 018713 245 EPGTPDIKNYITQSAVVQGL 264 (351)
Q Consensus 245 d~~~g~liGiIt~~dil~~l 264 (351)
|++ |+++|+||.+|++++.
T Consensus 224 d~~-~~~~Giit~~dll~~~ 242 (245)
T 3l2b_A 224 DEN-NKVVGSIARFHLISTH 242 (245)
T ss_dssp CTT-CBEEEEEECC------
T ss_pred cCC-CeEEEEEEHHHhhchh
Confidence 984 8999999999998765
No 96
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.57 E-value=4.4e-15 Score=124.91 Aligned_cols=133 Identities=14% Similarity=0.229 Sum_probs=106.4
Q ss_pred HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (351)
Q Consensus 40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~ 119 (351)
.|...++.++|. +..+++++++++|+.+|++.|.++++.++||+|+++ +++|+|+..||+.++.....
T Consensus 10 ~l~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~--------~lvGivt~~dl~~~~~~~~~--- 77 (159)
T 1yav_A 10 QLLEATVGQFMI-EADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSY--------RLHGLIGTNMIMNSIFGLER--- 77 (159)
T ss_dssp -CTTCBHHHHSE-EGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTC--------BEEEEEEHHHHHHHHBCSSS---
T ss_pred HHhHhhHHHHhC-CccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCC--------CEEEEeEHHHHHHHhhhhcc---
Confidence 356688889886 112688999999999999999999999999998753 89999999999854321100
Q ss_pred hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 199 (351)
. + ...
T Consensus 78 ------------------------------------------------------------------~--~-------~~~ 82 (159)
T 1yav_A 78 ------------------------------------------------------------------I--E-------FEK 82 (159)
T ss_dssp ------------------------------------------------------------------B--C-------GGG
T ss_pred ------------------------------------------------------------------c--c-------hhh
Confidence 0 0 011
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
....++.++|. +++.++.+++++.++++.|.++++ +||+|+ +|+++|+||.+|+++++..
T Consensus 83 ~~~~~v~~~m~----~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~-~g~~vGiit~~dil~~~~~ 142 (159)
T 1yav_A 83 LDQITVEEVML----TDIPRLHINDPIMKGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELNK 142 (159)
T ss_dssp TTTSBHHHHSB----CSCCEEETTSBHHHHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred hccCCHHHhcC----CCCceEcCCCCHHHHHHHHHhCCE--EEEEeC-CCeEEEEEEHHHHHHHHHH
Confidence 34578999999 559999999999999999998876 999997 4899999999999998854
No 97
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.56 E-value=8e-15 Score=126.04 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=110.1
Q ss_pred HHhccCccccCCCCCC-CCcEEE--cCCCCHHHHHHHHHHcCceeccee--cCCCCCCCccccceeeEeeHHHHHHHHHH
Q 018713 39 AAFARIPVLSFPNVPG-GRVIEI--MADTTIPDAVKILSECNILSAPVK--IPDAPSSSDWKERYLGIVDYSAIILWVLE 113 (351)
Q Consensus 39 ~~~~~~~v~~~~~~~~-~~~i~v--~~~~sl~~al~~m~~~~i~~~pVv--d~~~~~~~~~~~~~vGiv~~~di~~~~~~ 113 (351)
.++..++++++|.... ++++++ ++++|+.+|++.|.+++++++||+ |++ ++++|+|+..|++.++..
T Consensus 6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~--------~~lvGiit~~dl~~~~~~ 77 (185)
T 2j9l_A 6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES--------QRLVGFVLRRDLIISIEN 77 (185)
T ss_dssp ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT--------CBEEEEEEHHHHHHHHHH
T ss_pred hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC--------CeEEEEEEHHHHHHHHHh
Confidence 4567899999997311 127778 999999999999999999999999 443 289999999999976554
Q ss_pred hhHHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHH
Q 018713 114 TAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKV 193 (351)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 193 (351)
....... + ..+ ... ......+ ..
T Consensus 78 ~~~~~~~-~----------~~~---~~~--~~~~~~~------------------------------------~~----- 100 (185)
T 2j9l_A 78 ARKKQDG-V----------VST---SII--YFTEHSP------------------------------------PL----- 100 (185)
T ss_dssp HHTSCSC-C----------CTT---CEE--ECSSSCC------------------------------------CC-----
T ss_pred hcccCCC-c----------ccc---cee--ecccCCc------------------------------------cc-----
Confidence 3100000 0 000 000 0000000 00
Q ss_pred hhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 194 l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
........++.++|. .++.++.+++++.+|++.|.+++++++||+|+ |+++|+||..|+++++...
T Consensus 101 --~~~~~~~~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~--g~~vGiit~~dll~~l~~~ 166 (185)
T 2j9l_A 101 --PPYTPPTLKLRNILD----LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHIAQM 166 (185)
T ss_dssp --CTTCCCCEECGGGEE----SSCCEEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHHH
T ss_pred --ccccccCccHHHhhC----cCCeEeCCCCCHHHHHHHHHhCCCcEEEEEEC--CEEEEEEEHHHHHHHHHHh
Confidence 001234568999998 55999999999999999999999999999993 6999999999999988654
No 98
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.56 E-value=1.6e-14 Score=144.83 Aligned_cols=128 Identities=9% Similarity=0.197 Sum_probs=110.0
Q ss_pred CCcCchHhhhhccCCCCcEEecCC-CCHHHHHHHHHhCCCCEEEEEc-CCCCCEEEEEeHHHHHHHhhcCCCCchhhhhc
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATD-DSMLSVLLLLSKYRLRNVPIIE-PGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA 277 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~-~sl~ea~~~m~~~~~~~vpVvd-~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~ 277 (351)
+...+|+++|+ ++++++.++ +++.+++++|.+++++++||+| + +++++|+||.+||++.+..... ..
T Consensus 381 l~~~~V~diM~----~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~-~g~lvGiVt~~Dll~~l~~~~~------~~ 449 (527)
T 3pc3_A 381 WWSLAIAELEL----PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD-DGSVLGVVGQETLITQIVSMNR------QQ 449 (527)
T ss_dssp TTTSBGGGGCC----CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT-TCCEEEEEEHHHHHHHHHHHCC------CT
T ss_pred ccCCcHHHhCc----CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC-CCEEEEEEEHHHHHHHHHhccC------cC
Confidence 34578999999 569999999 9999999999999999999999 5 4799999999999988865321 13
Q ss_pred cCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCC---CCeEEEEEeHHHHHHHhcCcc
Q 018713 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ---QKKIVGNVSIRDIRHLLLKPE 345 (351)
Q Consensus 278 ~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~---~g~liGiIt~~DIl~~l~~~~ 345 (351)
..++++ +|+ +++++|++++++.+++++|.++++ +||||++ +|+++|+||..||++.+.++.
T Consensus 450 ~~~V~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 450 SDPAIK----ALN-KRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK 513 (527)
T ss_dssp TSBGGG----GEE-TTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred CCcHHH----Hhc-CCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence 568888 686 899999999999999999977765 7999972 289999999999999998765
No 99
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.53 E-value=5.1e-14 Score=139.29 Aligned_cols=121 Identities=15% Similarity=0.320 Sum_probs=107.8
Q ss_pred CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhh
Q 018713 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD 274 (351)
Q Consensus 200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~ 274 (351)
+...+++++|+ .+++++++++++.++++.|.++ +++++||+|++ ++++|+||.+|++...
T Consensus 152 ~~~~~v~~iM~----~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~~---------- 216 (473)
T 2zy9_A 152 YEEDEAGGLMT----PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVAD---------- 216 (473)
T ss_dssp SCTTBSTTTCB----SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHSC----------
T ss_pred CCCCCHHHhCC----CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-CcEEEEEEHHHHhcCC----------
Confidence 67789999999 5599999999999999999986 57999999984 8999999999997531
Q ss_pred hhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 275 ~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.+.++++ +|+ ++++++++++++.++++.|.+++.+.+||||+ +|+++|+||..||++.+.+
T Consensus 217 --~~~~v~d----im~-~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe-~g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 217 --PRTRVAE----IMN-PKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp --TTSBGGG----TSB-SSCCCEESSSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred --CCCcHHH----HhC-CCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcC-CCEEEEEEehHhhHHHHHH
Confidence 3457888 686 78999999999999999999999999999998 8999999999999988653
No 100
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.53 E-value=3.2e-14 Score=131.75 Aligned_cols=120 Identities=15% Similarity=0.260 Sum_probs=104.8
Q ss_pred ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHc-----CceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhH
Q 018713 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSEC-----NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAE 116 (351)
Q Consensus 42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~-----~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~ 116 (351)
...++.++|. ++++++++++|+.+|++.|.++ ++.++||+|+++ +++|+|+..|++.
T Consensus 135 ~~~~v~~iM~---~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~--------~lvGivt~~dll~------- 196 (286)
T 2oux_A 135 EDETAGAIMT---TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQEN--------HLVGVISLRDLIV------- 196 (286)
T ss_dssp CTTBHHHHCB---SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTC--------BEEEEEEHHHHTT-------
T ss_pred ChHHHHHhCC---CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCC--------eEEEEEEHHHHHc-------
Confidence 4567888886 5899999999999999999998 788899998753 8999999988771
Q ss_pred HHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhh
Q 018713 117 LAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQ 196 (351)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 196 (351)
T Consensus 197 -------------------------------------------------------------------------------- 196 (286)
T 2oux_A 197 -------------------------------------------------------------------------------- 196 (286)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 197 ~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
.....++.++|. ++++++++++++.++++.|.+++++++||+|+ +|+++|+||..|+++.+.+
T Consensus 197 --~~~~~~v~~im~----~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIT~~Dil~~i~~ 259 (286)
T 2oux_A 197 --NDDDTLIADILN----ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVIDD 259 (286)
T ss_dssp --SCTTSBHHHHSB----SCCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred --CCCCCcHHHHcC----CCCeeecCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHHH
Confidence 123468999998 55999999999999999999999999999998 4899999999999998854
No 101
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.50 E-value=8.3e-14 Score=128.37 Aligned_cols=122 Identities=17% Similarity=0.247 Sum_probs=104.4
Q ss_pred hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHc-----CceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSEC-----NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (351)
Q Consensus 41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~-----~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~ 115 (351)
+...++.++|. .+++++++++|+.+|++.|.++ ++.++||+|+++ +++|+|+..|++..
T Consensus 132 ~~~~~v~~iM~---~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~--------~lvGivt~~dll~~----- 195 (278)
T 2yvy_A 132 YEEDEAGGLMT---PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKG--------RLKGVLSLRDLIVA----- 195 (278)
T ss_dssp SCTTBGGGTCB---SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTC--------BEEEEEEHHHHHHS-----
T ss_pred CCcchHHhhcC---CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCC--------CEEEEEEHHHHhcC-----
Confidence 35578899997 5899999999999999999987 799999998753 89999999988720
Q ss_pred HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhh
Q 018713 116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL 195 (351)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ 195 (351)
T Consensus 196 -------------------------------------------------------------------------------- 195 (278)
T 2yvy_A 196 -------------------------------------------------------------------------------- 195 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713 196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (351)
Q Consensus 196 ~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~ 267 (351)
....++.++|. ++++++++++++.++++.|.+++++.+||+|++ |+++|+||..|+++.+.+.
T Consensus 196 ----~~~~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivT~~Dil~~i~~e 258 (278)
T 2yvy_A 196 ----DPRTRVAEIMN----PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLEAE 258 (278)
T ss_dssp ----CTTCBSTTTSB----SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHC---
T ss_pred ----CCCCcHHHHhC----CCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCC-CeEEEEEEHHHHHHHHHHH
Confidence 12467899998 559999999999999999999999999999984 8999999999999988543
No 102
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.50 E-value=1.6e-14 Score=147.70 Aligned_cols=134 Identities=16% Similarity=0.068 Sum_probs=106.0
Q ss_pred CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHH-hCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCc--------
Q 018713 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLS-KYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-------- 271 (351)
Q Consensus 201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~-~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~-------- 271 (351)
...+|+|+|++. +++.++++++++.|+.+.|. +++++++||+|+ +++++|+||.+|+++.+.......
T Consensus 451 ~~~~V~diM~p~--~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~ 527 (632)
T 3org_A 451 PEMTAREIMHPI--EGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-NGYLLGAISRKEIVDRLQHVLEDVPEPIAGHR 527 (632)
T ss_dssp TTSBHHHHCBCT--TTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT-TCBBCCEESHHHHTTTTTTC------------
T ss_pred ccCcHHHHhhcC--CCceEecCCCcHHHHHHHHHhcCCcceEEEEec-CCeEEEEEEHHHHHHHHHHHhhhccccccccc
Confidence 567899999944 56899999999999999999 799999999998 489999999999998765431000
Q ss_pred --------h----hhhhc---------------------cCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCee
Q 018713 272 --------W----FDIIA---------------------SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGI 318 (351)
Q Consensus 272 --------~----l~~l~---------------------~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~l 318 (351)
. .+... ..++++ +|+ +++++|++++++.+++++|.+++++.+
T Consensus 528 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~----iMt-~~pitV~~~~~l~ea~~~M~~~~i~~l 602 (632)
T 3org_A 528 TLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVV----PCD-VSPIVVTSYSLVRQLHFLFVMLMPSMI 602 (632)
T ss_dssp -------------------------------------------CC----SCC-CCCCEEETTCBHHHHHHHHHHTCCSEE
T ss_pred ceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccch----hhc-CCCceecCCCcHHHHHHHHHhcCCCEE
Confidence 0 00000 012566 687 888899999999999999999999999
Q ss_pred EEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 319 PVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 319 pVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
||++ +|+++|+||.+||++.+.+.
T Consensus 603 pVve--~G~lvGIVT~~Dll~~~~~~ 626 (632)
T 3org_A 603 YVTE--RGKLVGIVEREDVAYGYSNS 626 (632)
T ss_dssp EEEE--TTEEEEEEEGGGTEECCCC-
T ss_pred EEEE--CCEEEEEEehhhHHHHHhhh
Confidence 9994 59999999999998776543
No 103
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.49 E-value=1.9e-13 Score=124.08 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=55.4
Q ss_pred ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHh
Q 018713 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET 114 (351)
Q Consensus 42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~ 114 (351)
.++++.++|. +++++|.+++++.+|+++|.+++++++||+|++. .++++|+|+..||+..+...
T Consensus 11 ~~~~v~diMt---~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~------~~~LvGiIt~~dl~~~l~~~ 74 (250)
T 2d4z_A 11 YNIQVGDIMV---RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD------TNTLLGSIDRTEVEGLLQRR 74 (250)
T ss_dssp SSCBTTSSSB---SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTT------TCBEEEEEEHHHHHHHHHHH
T ss_pred CCCChHHhcC---CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCC------CCeEEEEEEHHHHHHHHHHh
Confidence 4688999997 6899999999999999999999999999998642 12799999999999765443
No 104
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.47 E-value=1.2e-13 Score=138.51 Aligned_cols=129 Identities=14% Similarity=0.169 Sum_probs=108.5
Q ss_pred HhccCccccCCCCCCCCcEEEcCC-CCHHHHHHHHHHcCceecceec-CCCCCCCccccceeeEeeHHHHHHHHHHhhHH
Q 018713 40 AFARIPVLSFPNVPGGRVIEIMAD-TTIPDAVKILSECNILSAPVKI-PDAPSSSDWKERYLGIVDYSAIILWVLETAEL 117 (351)
Q Consensus 40 ~~~~~~v~~~~~~~~~~~i~v~~~-~sl~~al~~m~~~~i~~~pVvd-~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~ 117 (351)
.|...+|+++|. ++++++.++ +|+.+|++.|.++++.++||+| +++ +++|+|+..||+.++...
T Consensus 380 ~l~~~~V~diM~---~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g--------~lvGiVt~~Dll~~l~~~--- 445 (527)
T 3pc3_A 380 WWWSLAIAELEL---PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDG--------SVLGVVGQETLITQIVSM--- 445 (527)
T ss_dssp TTTTSBGGGGCC---CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTC--------CEEEEEEHHHHHHHHHHH---
T ss_pred cccCCcHHHhCc---CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCC--------EEEEEEEHHHHHHHHHhc---
Confidence 367899999997 689999999 9999999999999999999999 432 899999999998654321
Q ss_pred HhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhc
Q 018713 118 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE 197 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 197 (351)
T Consensus 446 -------------------------------------------------------------------------------- 445 (527)
T 3pc3_A 446 -------------------------------------------------------------------------------- 445 (527)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CCCEEEEEeHHHHHHHhhcCC
Q 018713 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG---TPDIKNYITQSAVVQGLEGCK 268 (351)
Q Consensus 198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~---~g~liGiIt~~dil~~l~~~~ 268 (351)
......+|.++|+ ++++++++++++.+++++|.++++ +||+|++ +|+++|+||++||++++.+..
T Consensus 446 ~~~~~~~V~~im~----~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 446 NRQQSDPAIKALN----KRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK 513 (527)
T ss_dssp CCCTTSBGGGGEE----TTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred cCcCCCcHHHHhc----CCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence 1234578999999 669999999999999999976654 7999872 269999999999999997653
No 105
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.43 E-value=1.4e-12 Score=129.02 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=104.9
Q ss_pred ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHc-----CceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhH
Q 018713 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSEC-----NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAE 116 (351)
Q Consensus 42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~-----~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~ 116 (351)
.+.++.++|. .+++++++++|+.+|++.|.++ ++.++||+|+++ +++|+|+..|++..
T Consensus 153 ~~~~v~~iM~---~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~--------~lvGiVt~~Dll~~------ 215 (473)
T 2zy9_A 153 EEDEAGGLMT---PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKG--------RLKGVLSLRDLIVA------ 215 (473)
T ss_dssp CTTBSTTTCB---SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTS--------BEEEEEEHHHHHHS------
T ss_pred CCCCHHHhCC---CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCC--------cEEEEEEHHHHhcC------
Confidence 5577888997 5899999999999999999986 589999999753 89999999988720
Q ss_pred HHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhh
Q 018713 117 LAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQ 196 (351)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 196 (351)
T Consensus 216 -------------------------------------------------------------------------------- 215 (473)
T 2zy9_A 216 -------------------------------------------------------------------------------- 215 (473)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 197 ~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
....+++++|+ +++.++++++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++.+.+
T Consensus 216 ---~~~~~v~dim~----~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~-g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 216 ---DPRTRVAEIMN----PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp ---CTTSBGGGTSB----SSCCCEESSSBHHHHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHH
T ss_pred ---CCCCcHHHHhC----CCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCC-CEEEEEEehHhhHHHHHH
Confidence 13468999998 559999999999999999999999999999984 899999999999998754
No 106
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.41 E-value=7.1e-12 Score=124.81 Aligned_cols=158 Identities=11% Similarity=0.173 Sum_probs=119.8
Q ss_pred cccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecC--CCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713 46 VLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIP--DAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (351)
Q Consensus 46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~--~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~ 123 (351)
..+.|. .+++++++++|+.+|++.|.+++++++||+|+ ++ +++|+|+..|+..
T Consensus 115 ~~~~m~---~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~--------~lvGiVt~rDl~~-------------- 169 (511)
T 3usb_A 115 SESGVI---SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDER--------KLVGIITNRDMRF-------------- 169 (511)
T ss_dssp SSSCSS---SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTC--------BEEEEEEHHHHTT--------------
T ss_pred cccccc---cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCC--------EEEEEEEehHhhh--------------
Confidence 344554 57889999999999999999999999999986 32 8999999988761
Q ss_pred cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~ 203 (351)
......
T Consensus 170 --------------------------------------------------------------------------~~~~~~ 175 (511)
T 3usb_A 170 --------------------------------------------------------------------------IQDYSI 175 (511)
T ss_dssp --------------------------------------------------------------------------CCCSSS
T ss_pred --------------------------------------------------------------------------hccCCC
Confidence 012357
Q ss_pred chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD 283 (351)
Q Consensus 204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~ 283 (351)
+|.++|++ .+++++++++++.++++.|.+++++.+||+|++ |+++|+||.+|+++.+.... ...+
T Consensus 176 ~V~~vM~~---~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~-g~l~GiIT~~Dil~~~~~p~-----------a~~D 240 (511)
T 3usb_A 176 KISDVMTK---EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNN-GVLQGLITIKDIEKVIEFPN-----------SAKD 240 (511)
T ss_dssp BHHHHCCC---CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHCTT-----------CCBC
T ss_pred cHHHhccc---CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCC-CCEeeeccHHHHHHhhhccc-----------chhh
Confidence 89999993 168999999999999999999999999999984 89999999999999885422 1122
Q ss_pred cccCccCCCC--ceEEcCCCcHHHHHHHHHhcCCCeeEEEe
Q 018713 284 LGLPFMSSDE--VITIQSNELILEAFKRMKDNNIGGIPVVE 322 (351)
Q Consensus 284 L~~~~m~~~~--v~~V~~~~~l~~al~~m~~~~~~~lpVvd 322 (351)
. +. +. ...+.......+.+..|.+.+++.+.|-.
T Consensus 241 ~----~~-rl~V~aavg~~~d~~era~aLveaGvd~I~Id~ 276 (511)
T 3usb_A 241 K----QG-RLLVGAAVGVTADAMTRIDALVKASVDAIVLDT 276 (511)
T ss_dssp T----TS-CBCCEEEECSSTTHHHHHHHHHHTTCSEEEEEC
T ss_pred h----cc-ceeeeeeeeeccchHHHHHHHHhhccceEEecc
Confidence 1 11 11 12344344455566677888888665543
No 107
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.39 E-value=1.4e-12 Score=129.96 Aligned_cols=112 Identities=23% Similarity=0.364 Sum_probs=99.5
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCC
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEP--GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 292 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~--~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~ 292 (351)
.+++++++++++.+++++|.+++++++||+|+ + ++++|+||.+|++.. .. ...++.+ +|+ +
T Consensus 121 ~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~-~~lvGiVt~rDl~~~----~~-------~~~~V~~----vM~-~ 183 (511)
T 3usb_A 121 SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDE-RKLVGIITNRDMRFI----QD-------YSIKISD----VMT-K 183 (511)
T ss_dssp SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTT-CBEEEEEEHHHHTTC----CC-------SSSBHHH----HCC-C
T ss_pred cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCC-CEEEEEEEehHhhhh----cc-------CCCcHHH----hcc-c
Confidence 45889999999999999999999999999986 4 799999999999541 11 3567888 586 5
Q ss_pred -CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 293 -EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 293 -~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
+++++++++++.++++.|.+++++.+||||+ +|+++|+||.+||++.+...
T Consensus 184 ~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe-~g~l~GiIT~~Dil~~~~~p 235 (511)
T 3usb_A 184 EQLITAPVGTTLSEAEKILQKYKIEKLPLVDN-NGVLQGLITIKDIEKVIEFP 235 (511)
T ss_dssp CCCCCEETTCCHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHCT
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC-CCCEeeeccHHHHHHhhhcc
Confidence 8999999999999999999999999999998 99999999999999998763
No 108
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.35 E-value=6.2e-12 Score=124.94 Aligned_cols=117 Identities=19% Similarity=0.321 Sum_probs=104.1
Q ss_pred hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEc--CCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIE--PGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (351)
Q Consensus 205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd--~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~ 282 (351)
+.++|. .+++++++++++.++++.|.+++++++||+| + +++++|+||.+|++... . ...++.
T Consensus 92 ~~~im~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-~~~lvGivt~~Dl~~~~----~-------~~~~v~ 155 (491)
T 1zfj_A 92 SENGVI----IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-NRKLVGIITNRDMRFIS----D-------YNAPIS 155 (491)
T ss_dssp HTTTTS----SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-TCBEEEEEEHHHHHHCS----C-------SSSBTT
T ss_pred HHhcCc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCC-CCEEEEEEEHHHHhhhc----c-------CCCcHH
Confidence 467898 4589999999999999999999999999998 6 48999999999997541 1 355788
Q ss_pred ccccCccCCC-CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 283 DLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 283 ~L~~~~m~~~-~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
+ +|+ + +++++++++++.++++.|.+++++.+||||+ +|+++|+||..||++.+..
T Consensus 156 ~----im~-~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 156 E----HMT-SEHLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp T----SCC-CSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred H----HcC-CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHHHHHHhc
Confidence 8 586 6 8899999999999999999999999999998 8999999999999999875
No 109
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.35 E-value=2e-13 Score=136.01 Aligned_cols=177 Identities=10% Similarity=0.092 Sum_probs=27.5
Q ss_pred HhccCccccC-CCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHH
Q 018713 40 AFARIPVLSF-PNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA 118 (351)
Q Consensus 40 ~~~~~~v~~~-~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~ 118 (351)
.+.+....++ |. .+++++++++|+.+|++.|.+++++++||+|++.. .++++|+|+..|++.. .
T Consensus 92 ~v~~V~~~e~gM~---~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~-----~g~lvGiVt~~Dl~~~---~---- 156 (503)
T 1me8_A 92 MVHAVKNFKAGFV---VSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTP-----HGVLLGLVTQRDYPID---L---- 156 (503)
T ss_dssp HHHHHHTTTC----------------------------------------------------------------------
T ss_pred HHhhhhhcccCcc---cCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCc-----CCeEEEEEEHHHHHhh---h----
Confidence 3444445555 65 58889999999999999999999999999987410 1289999999988731 0
Q ss_pred hhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcC
Q 018713 119 AAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEE 198 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 198 (351)
T Consensus 157 -------------------------------------------------------------------------------- 156 (503)
T 1me8_A 157 -------------------------------------------------------------------------------- 156 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278 (351)
Q Consensus 199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~ 278 (351)
.....+|.++|++. .+++++++++++.+++++|.+++++.+||+|++ |+++|+||.+||++.+..... ..
T Consensus 157 ~~~~~~V~diM~~~--~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~~~~-------~~ 226 (503)
T 1me8_A 157 TQTETKVSDMMTPF--SKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD-QHLRYIVFRKDYDRSQVCHNE-------LV 226 (503)
T ss_dssp --------------------------------------------------------------------CCC-------CB
T ss_pred ccccCcHHHHhCCC--CCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEecHHHHhhhcccc-------hh
Confidence 01235789999933 348999999999999999999999999999984 899999999999988754321 01
Q ss_pred CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEE
Q 018713 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVG 330 (351)
Q Consensus 279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liG 330 (351)
.....+ + .-..+.. ....+.++.|.+.+++.+.| +.+.|...|
T Consensus 227 d~~~~l----~---v~a~v~~-~~~~e~~~~l~e~gv~~l~V-d~~~g~~~~ 269 (503)
T 1me8_A 227 DSQKRY----L---VGAGINT-RDFRERVPALVEAGADVLCI-DSSDGFSEW 269 (503)
T ss_dssp CTTSCB----C---CEEEECS-SSHHHHHHHHHHHTCSEEEE-CCSCCCSHH
T ss_pred cccccc----c---cccccCc-hhHHHHHHHHHhhhccceEE-ecccCcccc
Confidence 111121 1 1123444 56667788888889986544 432344333
No 110
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.35 E-value=3.7e-13 Score=137.70 Aligned_cols=159 Identities=13% Similarity=0.087 Sum_probs=104.0
Q ss_pred ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHH-HcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILS-ECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (351)
Q Consensus 42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~-~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~ 120 (351)
.+++++++|. ++++++++++++|+.|+++.|. +++++++||+|+++ +++|+|+..|++..+.........
T Consensus 451 ~~~~V~diM~-p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~--------~lvGiVt~~DL~~~l~~~~~~~~~ 521 (632)
T 3org_A 451 PEMTAREIMH-PIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANG--------YLLGAISRKEIVDRLQHVLEDVPE 521 (632)
T ss_dssp TTSBHHHHCB-CTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTC--------BBCCEESHHHHTTTTTTC------
T ss_pred ccCcHHHHhh-cCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCC--------eEEEEEEHHHHHHHHHHHhhhccc
Confidence 6789999996 5578999999999999999999 79999999999743 899999999998543222110000
Q ss_pred hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhh----
Q 018713 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQ---- 196 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~---- 196 (351)
... . ..... . .......+.+......
T Consensus 522 ~~~---------------~-------~~~~~----~------------------------~~~~~l~~~~~~~~~~~~~~ 551 (632)
T 3org_A 522 PIA---------------G-------HRTLV----L------------------------LDAADLSENIEGLVDETPSG 551 (632)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc---------------c-------cccee----c------------------------cCHHHHHhhcccCCCCCccc
Confidence 000 0 00000 0 0000000000000000
Q ss_pred ----------cCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 197 ----------EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 197 ----------~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
.......++.++|+ ++++++++++++.++++.|.+++++++||+ + +|+++|+||++|+++.+.
T Consensus 552 ~~~~~~e~~~~~~~~~~~v~~iMt----~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e-~G~lvGIVT~~Dll~~~~ 624 (632)
T 3org_A 552 EHSSKGKRTATVLEPTSSLVVPCD----VSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-E-RGKLVGIVEREDVAYGYS 624 (632)
T ss_dssp -------------------CCSCC----CCCCEEETTCBHHHHHHHHHHTCCSEEEEE-E-TTEEEEEEEGGGTEECCC
T ss_pred chhhhcccceEeeccccccchhhc----CCCceecCCCcHHHHHHHHHhcCCCEEEEE-E-CCEEEEEEehhhHHHHHh
Confidence 00012235889999 569999999999999999999999999999 4 379999999999987764
No 111
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.31 E-value=7.6e-13 Score=131.37 Aligned_cols=120 Identities=15% Similarity=0.240 Sum_probs=89.8
Q ss_pred chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD 283 (351)
Q Consensus 204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~ 283 (351)
.++++|. .+++++++++++.+++++|.+++++++||+|+ +++++|+||.+|++.. . . ...++.+
T Consensus 90 ~~~~~m~----~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-~~~lvGiVt~rDL~~~---~-~-------~~~~v~d 153 (496)
T 4fxs_A 90 IFEAGVV----THPVTVRPEQTIADVMELTHYHGFAGFPVVTE-NNELVGIITGRDVRFV---T-D-------LTKSVAA 153 (496)
T ss_dssp HCCC--C----BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS-SSBEEEEEEHHHHTTC---C-C-------TTSBGGG
T ss_pred ccccccc----cCceEECCCCCHHHHHHHHHHcCCcEEEEEcc-CCEEEEEEEHHHHhhc---c-c-------CCCcHHH
Confidence 3456788 45899999999999999999999999999998 4899999999998511 1 1 3567888
Q ss_pred cccCccC-CCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 284 LGLPFMS-SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 284 L~~~~m~-~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
+|+ ..+++++++++++.++++.|.+++++.+||||+ +|+++|+||.+||++.....
T Consensus 154 ----iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~G~l~GiIT~~DIl~~~~~p 210 (496)
T 4fxs_A 154 ----VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVND-EFQLKGMITAKDFHKAESKP 210 (496)
T ss_dssp ----TSEEGGGCCEEECC----CGGGTCC---CCCEEEECT-TSBCCEEECCC-----CCCT
T ss_pred ----HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEeehHhHHHHhhccc
Confidence 585 236899999999999999999999999999998 99999999999999876544
No 112
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.26 E-value=4.7e-13 Score=133.29 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=0.4
Q ss_pred hhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccccccc
Q 018713 209 IKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGL 286 (351)
Q Consensus 209 m~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~ 286 (351)
|+ .+++++++++++.++++.|.+++++++||+|++ .++++|+||.+|++.. . . ....++.+
T Consensus 103 M~----~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~-~-------~~~~~V~d--- 165 (503)
T 1me8_A 103 FV----VSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--L-T-------QTETKVSD--- 165 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc----cCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--h-c-------cccCcHHH---
Confidence 77 458999999999999999999999999999872 1699999999999754 1 1 13567888
Q ss_pred CccCCCC--ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 287 PFMSSDE--VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 287 ~~m~~~~--v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
+|+ ++ ++++++++++.+++++|.+++++.+||||+ +|+++|+||.+||++.+...
T Consensus 166 -iM~-~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~~~ 222 (503)
T 1me8_A 166 -MMT-PFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD-DQHLRYIVFRKDYDRSQVCH 222 (503)
T ss_dssp -----------------------------------------------------------C
T ss_pred -HhC-CCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEecHHHHhhhcc
Confidence 586 55 899999999999999999999999999998 89999999999999987644
No 113
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.25 E-value=5.5e-12 Score=125.19 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=89.1
Q ss_pred CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (351)
Q Consensus 44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~ 123 (351)
.++.++|. .+++++++++|+.+|++.|.+++++++||+|+++ +++|+|+..|+..
T Consensus 89 k~~~~~m~---~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~--------~lvGiVt~rDL~~-------------- 143 (496)
T 4fxs_A 89 KIFEAGVV---THPVTVRPEQTIADVMELTHYHGFAGFPVVTENN--------ELVGIITGRDVRF-------------- 143 (496)
T ss_dssp HHCCC--C---BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSS--------BEEEEEEHHHHTT--------------
T ss_pred cccccccc---cCceEECCCCCHHHHHHHHHHcCCcEEEEEccCC--------EEEEEEEHHHHhh--------------
Confidence 34456665 6888999999999999999999999999999753 8999999988761
Q ss_pred cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~ 203 (351)
......
T Consensus 144 --------------------------------------------------------------------------~~~~~~ 149 (496)
T 4fxs_A 144 --------------------------------------------------------------------------VTDLTK 149 (496)
T ss_dssp --------------------------------------------------------------------------CCCTTS
T ss_pred --------------------------------------------------------------------------cccCCC
Confidence 112346
Q ss_pred chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
++.++|++. .+++++++++++.+++++|.+++++.+||+|+ +|+++|+||.+|+++...
T Consensus 150 ~v~diM~p~--~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~G~l~GiIT~~DIl~~~~ 208 (496)
T 4fxs_A 150 SVAAVMTPK--ERLATVKEGATGAEVQEKMHKARVEKILVVND-EFQLKGMITAKDFHKAES 208 (496)
T ss_dssp BGGGTSEEG--GGCCEEECC----CGGGTCC---CCCEEEECT-TSBCCEEECCC-----CC
T ss_pred cHHHHhcCC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEeehHhHHHHhhc
Confidence 789999842 35889999999999999999999999999998 489999999999988763
No 114
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.24 E-value=7.5e-13 Score=131.68 Aligned_cols=119 Identities=20% Similarity=0.358 Sum_probs=7.2
Q ss_pred chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD 283 (351)
Q Consensus 204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~ 283 (351)
.+.++|. ++++++.+++++.++++.|.+++++.+||+|++ ++++|+||.+|+++.. . ...++.+
T Consensus 96 ~~~~iM~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~~----~-------~~~~v~~ 159 (494)
T 1vrd_A 96 KTENGII----YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFEK----N-------LSKKIKD 159 (494)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred hHhhcCc----cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhhc----C-------CCCcHHH
Confidence 3577888 559999999999999999999999999999974 7999999999997521 1 3457888
Q ss_pred cccCccCCC--CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 284 LGLPFMSSD--EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 284 L~~~~m~~~--~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
+|+ + +++++++++++.+++++|.+++++.+||||+ +|+++|+||..||++.+...
T Consensus 160 ----im~-~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~~ 216 (494)
T 1vrd_A 160 ----LMT-PREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK-DNKLVGLITIKDIMSVIEHP 216 (494)
T ss_dssp -------------------------------------------------------CHHHHTCT
T ss_pred ----HhC-CCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHhhhccc
Confidence 586 6 8999999999999999999999999999998 89999999999999998654
No 115
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.23 E-value=7.7e-13 Score=131.19 Aligned_cols=120 Identities=18% Similarity=0.300 Sum_probs=3.6
Q ss_pred chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD 283 (351)
Q Consensus 204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~ 283 (351)
.++++|. .+++++++++++.+++++|.+++++++||+| + ++++|+||.+|+.... . ...++.+
T Consensus 89 ~~~~~m~----~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~-g~lvGIVt~rDl~~~~----~-------~~~~V~~ 151 (490)
T 4avf_A 89 KHETAIV----RDPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q-GELVGIVTGRDLRVKP----N-------AGDTVAA 151 (490)
T ss_dssp HCCC----------------------------------------------------------------------------
T ss_pred ccccCcc----cCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEhHHhhhcc----c-------cCCcHHH
Confidence 3567788 4588999999999999999999999999999 3 6999999999985221 1 3557888
Q ss_pred cccCccC-CCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713 284 LGLPFMS-SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345 (351)
Q Consensus 284 L~~~~m~-~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~ 345 (351)
+|+ ..+++++++++++.+++++|.+++++.+||||+ +|+++|+||.+||++......
T Consensus 152 ----vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~~p~ 209 (490)
T 4avf_A 152 ----IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE-NFYLRGLVTFRDIEKAKTYPL 209 (490)
T ss_dssp ------------------------------------------------------------CTT
T ss_pred ----HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHhhhhccCcc
Confidence 585 227999999999999999999999999999998 999999999999999865543
No 116
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.23 E-value=3.4e-10 Score=112.40 Aligned_cols=117 Identities=10% Similarity=0.192 Sum_probs=101.2
Q ss_pred cccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceec--CCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713 46 VLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKI--PDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (351)
Q Consensus 46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd--~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~ 123 (351)
+.++|. .+++++++++|+.+|++.|.++++.++||+| ++ ++++|+|+..|++..
T Consensus 92 ~~~im~---~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~--------~~lvGivt~~Dl~~~------------- 147 (491)
T 1zfj_A 92 SENGVI---IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN--------RKLVGIITNRDMRFI------------- 147 (491)
T ss_dssp HTTTTS---SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT--------CBEEEEEEHHHHHHC-------------
T ss_pred HHhcCc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC--------CEEEEEEEHHHHhhh-------------
Confidence 466776 5788999999999999999999999999998 43 289999999998721
Q ss_pred cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~ 203 (351)
.....
T Consensus 148 ---------------------------------------------------------------------------~~~~~ 152 (491)
T 1zfj_A 148 ---------------------------------------------------------------------------SDYNA 152 (491)
T ss_dssp ---------------------------------------------------------------------------SCSSS
T ss_pred ---------------------------------------------------------------------------ccCCC
Confidence 01346
Q ss_pred chHhhhhccCCC-CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 204 TVRSIIKSYRWA-PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 204 ~V~dim~~~~~~-~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
++.++|+ + +++++++++++.++++.|.+++++.+||+|+ +|+++|++|.+|+++.+..
T Consensus 153 ~v~~im~----~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 153 PISEHMT----SEHLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp BTTTSCC----CSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred cHHHHcC----CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHHHHHHhc
Confidence 7899998 4 6889999999999999999999999999998 4899999999999998864
No 117
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.21 E-value=8.6e-12 Score=123.67 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=2.8
Q ss_pred CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (351)
Q Consensus 44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~ 123 (351)
..+.++|. .+++++++++|+.+|++.|.++++..+||+| ++ +++|+|+..|+...
T Consensus 88 k~~~~~m~---~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g--------~lvGIVt~rDl~~~------------- 142 (490)
T 4avf_A 88 KKHETAIV---RDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QG--------ELVGIVTGRDLRVK------------- 142 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCcc---cCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CC--------EEEEEEEhHHhhhc-------------
Confidence 34667775 6788999999999999999999999999999 32 89999999887510
Q ss_pred cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~ 203 (351)
.....
T Consensus 143 ---------------------------------------------------------------------------~~~~~ 147 (490)
T 4avf_A 143 ---------------------------------------------------------------------------PNAGD 147 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------------------cccCC
Confidence 01236
Q ss_pred chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
+|.++|++. .+++++++++++.+++++|.+++++.+||+|+ +|+++|+||.+|+++...
T Consensus 148 ~V~~vMtp~--~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~ 206 (490)
T 4avf_A 148 TVAAIMTPK--DKLVTAREGTPLEEMKAKLYENRIEKMLVVDE-NFYLRGLVTFRDIEKAKT 206 (490)
T ss_dssp --------------------------------------------------------------
T ss_pred cHHHHhccC--CCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHhhhhcc
Confidence 789999832 35899999999999999999999999999998 489999999999998764
No 118
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.20 E-value=8.9e-12 Score=121.97 Aligned_cols=111 Identities=15% Similarity=0.287 Sum_probs=0.0
Q ss_pred CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (351)
Q Consensus 55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
.++++++|+.|+.||+++|.++++..+||+++... .++++|||+..|+...
T Consensus 146 ~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~-----~~kLvGIvT~RD~rf~------------------------ 196 (556)
T 4af0_A 146 TDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEP-----DSKLLGIVTGRDVQFQ------------------------ 196 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEcCCCCCHHHHHHHHHHhCCCccccccccCc-----CCEEEEEEeccccccc------------------------
Confidence 56889999999999999999999999999986421 3489999998886510
Q ss_pred ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~ 214 (351)
....+|.++|+
T Consensus 197 -----------------------------------------------------------------d~~~~V~evMT---- 207 (556)
T 4af0_A 197 -----------------------------------------------------------------DAETPIKSVMT---- 207 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------------------------------------ccceEhhhhcc----
Confidence 12367899999
Q ss_pred CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (351)
Q Consensus 215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l 264 (351)
.++++++++.++.+|.++|.++++..+||+|+ +++++|+||++|+.+..
T Consensus 208 ~~lvt~~~~~~leeA~~iL~~~kieklpVVd~-~g~LvGlIT~kDi~k~~ 256 (556)
T 4af0_A 208 TEVVTGSSPITLEKANSLLRETKKGKLPIVDS-NGHLVSLVARSDLLKNQ 256 (556)
T ss_dssp --------------------------------------------------
T ss_pred cceEEecCCCCHHHHHHHHHHccccceeEEcc-CCcEEEEEEechhhhhh
Confidence 45999999999999999999999999999998 48999999999998765
No 119
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.17 E-value=2.6e-12 Score=125.73 Aligned_cols=110 Identities=25% Similarity=0.308 Sum_probs=0.4
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCC
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE 293 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~ 293 (351)
+++++.|+.++.+++++|.+++++.+||+|++ +++++||||.+|+. +. + ...++++ +|+ ++
T Consensus 147 dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r-f~----d-------~~~~V~e----vMT-~~ 209 (556)
T 4af0_A 147 DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ-FQ----D-------AETPIKS----VMT-TE 209 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc-cc----c-------cceEhhh----hcc-cc
Confidence 48899999999999999999999999999863 47999999999974 21 1 3568889 697 78
Q ss_pred ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
+++++.++++.+|.++|.++++..+||||+ +++|+|+||.+|+.+.-..
T Consensus 210 lvt~~~~~~leeA~~iL~~~kieklpVVd~-~g~LvGlIT~kDi~k~~~~ 258 (556)
T 4af0_A 210 VVTGSSPITLEKANSLLRETKKGKLPIVDS-NGHLVSLVARSDLLKNQNY 258 (556)
T ss_dssp -------------------------------------------------C
T ss_pred eEEecCCCCHHHHHHHHHHccccceeEEcc-CCcEEEEEEechhhhhhhC
Confidence 999999999999999999999999999999 9999999999999886543
No 120
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.16 E-value=2.3e-11 Score=120.94 Aligned_cols=120 Identities=16% Similarity=0.248 Sum_probs=6.4
Q ss_pred ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713 45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV 124 (351)
Q Consensus 45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~ 124 (351)
.+.++|. ++++++++++|+.+|++.|.++++..+||+|+++ +++|+|+..|++..
T Consensus 96 ~~~~iM~---~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~--------~lvGivt~~Dl~~~-------------- 150 (494)
T 1vrd_A 96 KTENGII---YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEG--------RLVGLLTNRDVRFE-------------- 150 (494)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred hHhhcCc---cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCC--------EEEEEEEHHHHHhh--------------
Confidence 4566775 5889999999999999999999999999998643 89999999887720
Q ss_pred ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713 125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT 204 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~ 204 (351)
. ....+
T Consensus 151 -------------------------------------------------------------------------~-~~~~~ 156 (494)
T 1vrd_A 151 -------------------------------------------------------------------------K-NLSKK 156 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------------c-CCCCc
Confidence 0 12357
Q ss_pred hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (351)
Q Consensus 205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~ 266 (351)
+.++|++. .++.++++++++.++++.|.+++++.+||+|+ +|+++|+||..|+++.+..
T Consensus 157 v~~im~~~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~ 215 (494)
T 1vrd_A 157 IKDLMTPR--EKLIVAPPDISLEKAKEILHQHRIEKLPLVSK-DNKLVGLITIKDIMSVIEH 215 (494)
T ss_dssp -------------------------------------------------------CHHHHTC
T ss_pred HHHHhCCC--CCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHhhhcc
Confidence 88999841 26999999999999999999999999999998 4899999999999998754
No 121
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.07 E-value=1.3e-12 Score=130.62 Aligned_cols=121 Identities=15% Similarity=0.187 Sum_probs=70.3
Q ss_pred chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (351)
Q Consensus 204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v 281 (351)
++.++|. ++++++.+++++.+++++|.+++++.+||+|++ +++++|+||.+|+..... .....++
T Consensus 109 ~~~~im~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~---------~~~~~~v 175 (514)
T 1jcn_A 109 NFEQGFI----TDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE---------KDHTTLL 175 (514)
T ss_dssp TCCTTSC----SSCCCCCC-----------------CEESCC--------CCEECTTTTC--------------------
T ss_pred hhhhccc----cCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh---------ccCCCCH
Confidence 4668888 458899999999999999999999999999872 279999999999865321 0134578
Q ss_pred cccccCccCCC--CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 282 SDLGLPFMSSD--EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 282 ~~L~~~~m~~~--~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
.+ +|+ + +++++.+++++.+++++|.+++.+.+||||+ +|+++|+||.+||++.+..
T Consensus 176 ~~----vm~-~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~ 233 (514)
T 1jcn_A 176 SE----VMT-PRIELVVAPAGVTLKEANEILQRSKKGKLPIVND-CDELVAIIARTDLKKNRDY 233 (514)
T ss_dssp ----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS-SSCCC----CCCCSSCCCC
T ss_pred HH----HhC-CCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC-CCeEEEEEEHHHHHHHhhC
Confidence 88 586 6 8999999999999999999999999999998 8999999999999877654
No 122
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.04 E-value=1.9e-11 Score=121.35 Aligned_cols=113 Identities=25% Similarity=0.429 Sum_probs=1.4
Q ss_pred HhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccc
Q 018713 206 RSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLG 285 (351)
Q Consensus 206 ~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~ 285 (351)
.++|. .+++++++++++.++++.|.+++++++||+|+ ++++|+|+.+|++. . ...++.+
T Consensus 96 ~~~m~----~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~lvGivt~~Dl~~---~----------~~~~v~~-- 154 (486)
T 2cu0_A 96 ERLIV----EDVITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAA---R----------EGKLVKE-- 154 (486)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hhccc----cCceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHhcc---C----------CCCCHHH--
Confidence 44677 45899999999999999999999999999986 58999999999975 1 2446788
Q ss_pred cCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713 286 LPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (351)
Q Consensus 286 ~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~ 343 (351)
+|. ++++++++++++.++++.|.+++++.+||||+ +|+++|+||.+||++.+..
T Consensus 155 --im~-~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde-~g~lvGiiT~~Dil~~~~~ 208 (486)
T 2cu0_A 155 --LMT-KEVITVPESIEVEEALKIMIENRIDRLPVVDE-RGKLVGLITMSDLVARKKY 208 (486)
T ss_dssp --------------------------------------------------------CC
T ss_pred --Hcc-CCCeEECCcCcHHHHHHHHHHcCCCEEEEEec-CCeEEEEEEHHHHHHhhhc
Confidence 586 78889999999999999999999999999998 8999999999999998763
No 123
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.01 E-value=1.5e-10 Score=114.85 Aligned_cols=163 Identities=15% Similarity=0.229 Sum_probs=22.9
Q ss_pred cccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccc
Q 018713 46 VLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVG 125 (351)
Q Consensus 46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~ 125 (351)
..+.|. .+++++++++|+.++++.|.++++..+||+|+ + +++|+|+..|++.
T Consensus 95 ~~~~m~---~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~--------~lvGivt~~Dl~~---------------- 146 (486)
T 2cu0_A 95 AERLIV---EDVITIAPDETVDFALFLMEKHGIDGLPVVED-E--------KVVGIITKKDIAA---------------- 146 (486)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred hhhccc---cCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-C--------EEEEEEEHHHhcc----------------
Confidence 355564 68899999999999999999999999999986 2 8999999888761
Q ss_pred cccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCch
Q 018713 126 TATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTV 205 (351)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V 205 (351)
....++
T Consensus 147 --------------------------------------------------------------------------~~~~~v 152 (486)
T 2cu0_A 147 --------------------------------------------------------------------------REGKLV 152 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------CCCCCH
Confidence 012467
Q ss_pred HhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccc
Q 018713 206 RSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLG 285 (351)
Q Consensus 206 ~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~ 285 (351)
.++|+ ++++++++++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++....... .......+
T Consensus 153 ~~im~----~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde-~g~lvGiiT~~Dil~~~~~~~~-------~~~~~g~~- 219 (486)
T 2cu0_A 153 KELMT----KEVITVPESIEVEEALKIMIENRIDRLPVVDE-RGKLVGLITMSDLVARKKYKNA-------VRDENGEL- 219 (486)
T ss_dssp -----------------------------------------------------------CCTTC-------CBCTTSCB-
T ss_pred HHHcc----CCCeEECCcCcHHHHHHHHHHcCCCEEEEEec-CCeEEEEEEHHHHHHhhhcccc-------ccccCCce-
Confidence 88898 45889999999999999999999999999998 4899999999999988632110 00001111
Q ss_pred cCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEE
Q 018713 286 LPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNV 332 (351)
Q Consensus 286 ~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiI 332 (351)
+. . ..+..++ .+.+..|.+.+++.+ |++...|...+++
T Consensus 220 ---~v-~--~~~~~~~--~~~a~~l~~~gvd~l-vvdta~G~~~~~L 257 (486)
T 2cu0_A 220 ---LV-A--AAVSPFD--IKRAIELDKAGVDVI-VVDTAHAHNLKAI 257 (486)
T ss_dssp ---CC-E--EEECTTC--HHHHHHHHHTTCSEE-EEECSCCCCHHHH
T ss_pred ---ee-c--ceechhh--HHHHHHHHHhcCCce-EEEecCCcEeehh
Confidence 10 1 1233333 556778888898865 6664245554444
No 124
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=98.97 E-value=4.4e-11 Score=119.46 Aligned_cols=124 Identities=10% Similarity=0.145 Sum_probs=67.7
Q ss_pred ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713 45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV 124 (351)
Q Consensus 45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~ 124 (351)
.+.++|. ++++++.+++|+.+|++.|.+++++.+||+|++.. .++++|+|+..|+....
T Consensus 109 ~~~~im~---~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-----~~~lvGiVt~~Dl~~~~------------- 167 (514)
T 1jcn_A 109 NFEQGFI---TDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTM-----GSKLVGIVTSRDIDFLA------------- 167 (514)
T ss_dssp TCCTTSC---SSCCCCCC-----------------CEESCC-------------CCEECTTTTC----------------
T ss_pred hhhhccc---cCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCc-----CCEEEEEEEHHHHHhhh-------------
Confidence 4667775 57889999999999999999999999999987310 02899999987765210
Q ss_pred ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713 125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT 204 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~ 204 (351)
......+
T Consensus 168 -------------------------------------------------------------------------~~~~~~~ 174 (514)
T 1jcn_A 168 -------------------------------------------------------------------------EKDHTTL 174 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------------hccCCCC
Confidence 0012357
Q ss_pred hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (351)
Q Consensus 205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~ 265 (351)
+.++|++. .+++++++++++.++++.|.+++++.+||+|+ +|+++|+||++|+++.+.
T Consensus 175 v~~vm~~~--~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~ 232 (514)
T 1jcn_A 175 LSEVMTPR--IELVVAPAGVTLKEANEILQRSKKGKLPIVND-CDELVAIIARTDLKKNRD 232 (514)
T ss_dssp ------CC--BCCCCEETTCCSTTTTTHHHHHTCSCCCEESS-SSCCC----CCCCSSCCC
T ss_pred HHHHhCCC--CCCeEECCCCCHHHHHHHHHHcCCCcccEECC-CCeEEEEEEHHHHHHHhh
Confidence 88999841 16999999999999999999999999999998 489999999999987764
No 125
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.88 E-value=1.7e-09 Score=78.32 Aligned_cols=46 Identities=30% Similarity=0.279 Sum_probs=41.9
Q ss_pred CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHH
Q 018713 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILW 110 (351)
Q Consensus 56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~ 110 (351)
++++++|++|+.+|++.|.++++.++||+|++ +++||+|..||+..
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~---------~lvGIvT~~Di~~~ 46 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEGD---------EILGVVTERDILDK 46 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEETT---------EEEEEEEHHHHHHH
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECC---------EEEEEEEHHHHHHH
Confidence 46899999999999999999999999999853 89999999999854
No 126
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.88 E-value=4.5e-09 Score=75.99 Aligned_cols=69 Identities=14% Similarity=0.265 Sum_probs=55.6
Q ss_pred cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceE
Q 018713 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (351)
Q Consensus 217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~ 296 (351)
++++.+++++.+|+++|.+++++++||+|+ |+++|++|.+|+++.+.... .+ ....++++ +|+ +++++
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~-~~----~~~~~V~~----iMt-~~~iT 69 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKG-KN----PKEVKVEE----IMT-KNPVK 69 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTT-CC----GGGCBGGG----TCE-ECTTC
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcC-CC----cccCCHHH----hcC-CCCeE
Confidence 689999999999999999999999999985 59999999999987664322 11 24568889 697 66655
Q ss_pred E
Q 018713 297 I 297 (351)
Q Consensus 297 V 297 (351)
|
T Consensus 70 V 70 (70)
T 3ghd_A 70 I 70 (70)
T ss_dssp C
T ss_pred C
Confidence 3
No 127
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.58 E-value=1.2e-07 Score=67.62 Aligned_cols=69 Identities=13% Similarity=0.225 Sum_probs=54.9
Q ss_pred CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (351)
Q Consensus 216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~ 295 (351)
++.++++++++.+|++.|.+++++++||+|+ |+++|+||.+|+++.+..... . ....++++ +|+ ++++
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~--~~l~Givt~~dl~~~~~~~~~-~----~~~~~v~~----im~-~~~~ 68 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKGK-N----PKEVKVEE----IMT-KNPV 68 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTTC-C----GGGCBGGG----TCE-ECTT
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHcCC-C----cccCCHHH----hcC-CCCe
Confidence 3678999999999999999999999999986 599999999999998754321 0 13567888 575 5544
Q ss_pred E
Q 018713 296 T 296 (351)
Q Consensus 296 ~ 296 (351)
+
T Consensus 69 ~ 69 (70)
T 3fio_A 69 K 69 (70)
T ss_dssp C
T ss_pred E
Confidence 3
No 128
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.44 E-value=6.6e-07 Score=63.68 Aligned_cols=50 Identities=28% Similarity=0.428 Sum_probs=45.5
Q ss_pred CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (351)
Q Consensus 293 ~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~ 344 (351)
+++++++++++.+|++.|.+++.+.+||+|+ |+++|+||.+||++.+...
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~--~~l~Givt~~dl~~~~~~~ 50 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAK 50 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTT
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHc
Confidence 3578999999999999999999999999997 9999999999999987543
No 129
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=40.01 E-value=37 Score=24.13 Aligned_cols=28 Identities=7% Similarity=0.179 Sum_probs=18.7
Q ss_pred eeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713 317 GIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345 (351)
Q Consensus 317 ~lpVvd~~~g~liGiIt~~DIl~~l~~~~ 345 (351)
.+=++++ +|+.+|+++..+.++...+..
T Consensus 15 eVrli~~-~Ge~lGv~~~~eAl~~A~e~~ 42 (78)
T 1tif_A 15 EVRLIDQ-NGDQLGIKSKQEALEIAARRN 42 (78)
T ss_dssp EEEEECT-TSCEEEEEEHHHHHHHHHHTT
T ss_pred EEEEECC-CCcCCCcccHHHHHHHHHHcC
Confidence 3556776 777777777777776654443
No 130
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=22.84 E-value=1.2e+02 Score=20.03 Aligned_cols=29 Identities=7% Similarity=-0.086 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEEcCCCCC
Q 018713 222 TDDSMLSVLLLLSKYRLRNVPIIEPGTPD 250 (351)
Q Consensus 222 ~~~sl~ea~~~m~~~~~~~vpVvd~~~g~ 250 (351)
+-+++.||+..|.-.+...+.-.|.++|+
T Consensus 11 kpmsveEAv~qmel~gh~F~vF~n~~t~~ 39 (57)
T 3k2t_A 11 KPMDSEEAVLQMNLLGHSFYVYTDAETNG 39 (57)
T ss_dssp CCBCHHHHHHHHHHHTCSEEEEEBSSSCC
T ss_pred CCCCHHHHHHHHHhCCCcEEEEEcCCCCC
Confidence 45789999999998888888888865444
No 131
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=20.38 E-value=80 Score=25.37 Aligned_cols=34 Identities=21% Similarity=0.467 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 018713 303 ILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338 (351)
Q Consensus 303 l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl 338 (351)
+.+.+..+.+.+...+.|-.+ ++++|+|...|.+
T Consensus 121 ~~~~~~~la~~G~T~v~VA~d--~~l~GvIalaD~i 154 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVVEG--SRVLGVIALKDIV 154 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEEET--TEEEEEEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEEEC--CEEEEEEEEecCC
Confidence 677778888888887777665 9999999988854
Done!