Query 018714
Match_columns 351
No_of_seqs 133 out of 305
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:56:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ljm_A Coil Ser L9C; de novo d 67.3 7.4 0.00025 22.6 3.4 22 294-315 5-26 (31)
2 2pnv_A Small conductance calci 64.9 15 0.0005 24.0 5.0 28 291-318 10-37 (43)
3 2akf_A Coronin-1A; coiled coil 62.6 12 0.00041 22.1 3.8 19 288-306 11-29 (32)
4 3na7_A HP0958; flagellar bioge 54.6 71 0.0024 28.4 9.7 67 259-327 10-83 (256)
5 2akf_A Coronin-1A; coiled coil 51.6 25 0.00085 20.8 3.9 24 290-313 6-29 (32)
6 1m1j_C Fibrinogen gamma chain; 46.5 1.6E+02 0.0054 28.4 11.2 47 227-278 20-66 (409)
7 2yy0_A C-MYC-binding protein; 42.1 45 0.0015 22.5 4.7 32 283-314 19-50 (53)
8 1wyy_A E2 glycoprotein; membra 41.9 1.2E+02 0.0041 24.8 8.0 63 262-329 38-105 (149)
9 3mtu_A Tropomyosin alpha-1 cha 40.3 60 0.002 23.5 5.5 36 287-322 6-41 (75)
10 1iq5_B Ca2+/calmodulin depende 40.2 8.7 0.0003 22.5 0.7 7 13-19 21-27 (27)
11 2xz3_A Maltose ABC transporter 38.7 1.1E+02 0.0038 29.3 9.0 40 288-327 377-416 (463)
12 3nmd_A CGMP dependent protein 37.1 98 0.0034 22.3 6.1 26 291-316 41-66 (72)
13 1mof_A Moloney murine leukemia 36.5 51 0.0017 22.6 4.2 29 299-327 4-32 (55)
14 1ckk_B Camkk, protein (RAT Ca2 36.5 10 0.00035 22.0 0.6 6 13-18 21-26 (26)
15 1m1j_B Fibrinogen beta chain; 36.4 2.9E+02 0.0098 27.0 11.3 22 227-248 82-103 (464)
16 2pnv_A Small conductance calci 36.1 51 0.0018 21.3 4.0 25 290-314 16-40 (43)
17 1aq5_A Matrilin-1, CMP, cartil 35.6 63 0.0021 21.4 4.4 24 290-313 23-46 (47)
18 1wt6_A Myotonin-protein kinase 34.8 1.4E+02 0.0046 22.1 9.2 35 236-275 12-46 (81)
19 1t2k_D Cyclic-AMP-dependent tr 34.7 1E+02 0.0035 21.0 5.9 27 290-316 29-55 (61)
20 3mq7_A Bone marrow stromal ant 32.9 1.6E+02 0.0055 23.2 7.1 33 289-321 70-102 (121)
21 4dnd_A Syntaxin-10, SYN10; str 32.2 1.8E+02 0.0063 23.1 7.8 28 288-315 65-92 (130)
22 2zqm_A Prefoldin beta subunit 31.8 1.2E+02 0.0042 23.0 6.6 44 289-332 69-112 (117)
23 1kd8_B GABH BLL, GCN4 acid bas 31.1 89 0.003 19.3 4.2 16 290-305 8-23 (36)
24 2p32_A Heat shock 70 kDa prote 30.3 1.9E+02 0.0064 22.3 7.7 18 283-300 46-63 (120)
25 1y4m_A HERV-FRD_6P24.1 proviru 30.2 26 0.00088 23.8 1.9 31 300-331 3-33 (53)
26 1ses_A Seryl-tRNA synthetase; 29.6 99 0.0034 29.8 6.8 55 260-315 42-96 (421)
27 3c3f_A Alpha/beta peptide with 28.7 57 0.002 19.9 3.0 16 301-316 12-27 (34)
28 1pzq_A Erythronolide synthase; 27.2 1.3E+02 0.0043 19.9 4.8 36 290-325 12-49 (60)
29 1jnm_A Proto-oncogene C-JUN; B 27.0 94 0.0032 21.3 4.5 33 292-324 24-56 (62)
30 1ud0_A HSC70, 70 kDa heat-shoc 26.9 2E+02 0.0069 21.6 7.7 13 287-299 36-48 (113)
31 3mq9_A Bone marrow stromal ant 26.7 4.1E+02 0.014 25.1 13.5 41 287-327 394-434 (471)
32 2oxj_A Hybrid alpha/beta pepti 26.3 67 0.0023 19.6 3.0 19 298-316 9-27 (34)
33 2wq1_A General control protein 25.4 98 0.0034 18.7 3.6 10 305-314 15-24 (33)
34 1hjb_A Ccaat/enhancer binding 24.7 1.7E+02 0.0057 21.8 5.8 39 287-325 40-78 (87)
35 4e61_A Protein BIM1; EB1-like 24.7 1.5E+02 0.0052 23.0 5.7 35 290-324 18-52 (106)
36 1g6u_A Domain swapped dimer; d 22.3 1.6E+02 0.0053 18.7 6.2 30 279-308 16-45 (48)
37 1lq7_A Alpha3W; three helix bu 22.2 1.9E+02 0.0064 19.5 7.4 31 286-316 28-60 (67)
38 1fxk_C Protein (prefoldin); ar 22.0 1.9E+02 0.0064 22.7 6.1 23 292-314 104-126 (133)
39 1ci6_A Transcription factor AT 21.6 2E+02 0.007 19.7 6.0 30 287-316 27-56 (63)
40 2c5k_T Syntaxin TLG1, T-snare 21.6 2.6E+02 0.0089 21.0 6.8 18 293-310 39-56 (95)
41 2zdi_C Prefoldin subunit alpha 21.5 1.7E+02 0.0059 23.6 5.9 38 291-328 99-136 (151)
42 1au1_A Interferon-beta; helica 20.7 3.3E+02 0.011 22.6 7.6 48 65-113 53-103 (166)
43 2yy0_A C-MYC-binding protein; 20.1 1.5E+02 0.0052 19.8 4.3 15 259-273 18-32 (53)
No 1
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=67.34 E-value=7.4 Score=22.63 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhchHHHHHHHhH
Q 018714 294 DLGKRADNLSQGLDHLTKAVDG 315 (351)
Q Consensus 294 el~~~~e~Le~gle~Le~~vd~ 315 (351)
.+.++|..|+..++.||+.++.
T Consensus 5 alekkcaalesklqalekklea 26 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555443
No 2
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=64.86 E-value=15 Score=23.97 Aligned_cols=28 Identities=14% Similarity=0.380 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHHH
Q 018714 291 SVLDLGKRADNLSQGLDHLTKAVDGFFK 318 (351)
Q Consensus 291 ~veel~~~~e~Le~gle~Le~~vd~lFr 318 (351)
-+-++..+-+.||+.|..||.+++.+-.
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3555555555666666666665555433
No 3
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=62.64 E-value=12 Score=22.13 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhch
Q 018714 288 LQKSVLDLGKRADNLSQGL 306 (351)
Q Consensus 288 ~~~~veel~~~~e~Le~gl 306 (351)
+...|++|+++++.||+.+
T Consensus 11 l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 11 LNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344666666666655544
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=54.55 E-value=71 Score=28.41 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHHHHHHHHhhccchH-------HHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHH
Q 018714 259 LNELEAVDGSVKKLYEVIQNEVDTV-------EEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDAL 327 (351)
Q Consensus 259 l~El~~vd~av~~L~~~i~~~~~~e-------~~~~~~~~veel~~~~e~Le~gle~Le~~vd~lFr~li~~R~~L 327 (351)
|.+++.+|..+..|...+... +. ....++..+..++..++.++.-+..++..++.+-.++-+.+.-+
T Consensus 10 L~~LQ~lD~~i~~l~~~~~~l--p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 10 LIEISHLDKEIDSLEPLIREK--RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHTHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665555554433221 11 12234444555555555555555555555555555555555544
No 5
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=51.55 E-value=25 Score=20.78 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHH
Q 018714 290 KSVLDLGKRADNLSQGLDHLTKAV 313 (351)
Q Consensus 290 ~~veel~~~~e~Le~gle~Le~~v 313 (351)
+.+.+|+..+++|.+.+|.||+-|
T Consensus 6 e~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777777777777777777655
No 6
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=46.54 E-value=1.6e+02 Score=28.38 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=32.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhhhcCcchhHhHHHHHHHHHHHHHHHHhh
Q 018714 227 SDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQN 278 (351)
Q Consensus 227 p~~~~Ws~~~~~Lq~rv~~e~~~~~~~g~~~~l~El~~vd~av~~L~~~i~~ 278 (351)
|.++.=...+.+++.-|..+++..+ ..+.|+++.-..+..|+..++.
T Consensus 20 PT~C~i~d~L~k~e~~V~~~l~~LE-----~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 20 PTTCGIADFFNKYRLTTDGELLEIE-----GLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp ECTTHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHhcchhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677788777765554433 3578888888888888777653
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.06 E-value=45 Score=22.52 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 018714 283 VEEELLQKSVLDLGKRADNLSQGLDHLTKAVD 314 (351)
Q Consensus 283 e~~~~~~~~veel~~~~e~Le~gle~Le~~vd 314 (351)
.+.+.++.-.++|+.+++.|...++++..+++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666777777777666666666554
No 8
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=41.94 E-value=1.2e+02 Score=24.81 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHH-----HHHHHhHHHHHh
Q 018714 262 LEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFF-----KIVLSGRDALLC 329 (351)
Q Consensus 262 l~~vd~av~~L~~~i~~~~~~e~~~~~~~~veel~~~~e~Le~gle~Le~~vd~lF-----r~li~~R~~LL~ 329 (351)
|..+..|+.++...+ ..+...+...+..|...+++....|+++-..+|.+- +|+|.||.+-+|
T Consensus 38 ~~tts~AL~kiQ~VV-----N~q~~aL~~l~~qL~~nFgAISssi~dIy~rLd~leAdaQVDRLItGRl~s~n 105 (149)
T 1wyy_A 38 LTTTSTALGKLQDVV-----NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGGRGGSD 105 (149)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 455555555544332 234456778888999999999999999988888874 789999987666
No 9
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=40.34 E-value=60 Score=23.49 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHH
Q 018714 287 LLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLS 322 (351)
Q Consensus 287 ~~~~~veel~~~~e~Le~gle~Le~~vd~lFr~li~ 322 (351)
.++..++.|+...+.+.+.++.+|++=|..|..|..
T Consensus 6 aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRd 41 (75)
T 3mtu_A 6 AIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRN 41 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445555566666666666666666665555555543
No 10
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=40.19 E-value=8.7 Score=22.45 Aligned_cols=7 Identities=86% Similarity=1.701 Sum_probs=5.9
Q ss_pred CCCCccc
Q 018714 13 PFGNPFR 19 (351)
Q Consensus 13 ~~~~~~~ 19 (351)
||||||.
T Consensus 21 sf~nPf~ 27 (27)
T 1iq5_B 21 RFGNPFR 27 (27)
T ss_dssp SSSCSCC
T ss_pred cccCCCC
Confidence 7999984
No 11
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=38.73 E-value=1.1e+02 Score=29.26 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHH
Q 018714 288 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDAL 327 (351)
Q Consensus 288 ~~~~veel~~~~e~Le~gle~Le~~vd~lFr~li~~R~~L 327 (351)
.+.-+++++.-++.+++.|..|+++++.+-.-+...|-.|
T Consensus 377 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 416 (463)
T 2xz3_A 377 LTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGL 416 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 3455788899999999999999999999999999999865
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=37.10 E-value=98 Score=22.31 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHH
Q 018714 291 SVLDLGKRADNLSQGLDHLTKAVDGF 316 (351)
Q Consensus 291 ~veel~~~~e~Le~gle~Le~~vd~l 316 (351)
.++++.+.+...+.-|..|-.++|.+
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555555555555554443
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=36.55 E-value=51 Score=22.57 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=21.3
Q ss_pred HHHHhhchHHHHHHHhHHHHHHHHhHHHH
Q 018714 299 ADNLSQGLDHLTKAVDGFFKIVLSGRDAL 327 (351)
Q Consensus 299 ~e~Le~gle~Le~~vd~lFr~li~~R~~L 327 (351)
++.++.+|..+.++++.+...+.+.|..|
T Consensus 4 l~~~~~si~~l~~ql~sla~vvlQNRraL 32 (55)
T 1mof_A 4 LREVEKSISNLEKSLTSLSEVVLQNRRGL 32 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777788888888888864
No 14
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=36.48 E-value=10 Score=21.98 Aligned_cols=6 Identities=83% Similarity=1.796 Sum_probs=5.3
Q ss_pred CCCCcc
Q 018714 13 PFGNPF 18 (351)
Q Consensus 13 ~~~~~~ 18 (351)
||||||
T Consensus 21 sf~nPf 26 (26)
T 1ckk_B 21 SFGNPF 26 (26)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 789997
No 15
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=36.39 E-value=2.9e+02 Score=27.04 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=15.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHH
Q 018714 227 SDTLPWAPAFSALQANVNAEVR 248 (351)
Q Consensus 227 p~~~~Ws~~~~~Lq~rv~~e~~ 248 (351)
|.++.|..-+.++|.-|..+++
T Consensus 82 PTtC~l~D~L~k~q~~V~~~Lq 103 (464)
T 1m1j_B 82 PTGCELQTTLLKQEKTVKPVLR 103 (464)
T ss_dssp ECTTHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHhhhhhHhHHH
Confidence 6778888777888887754443
No 16
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=36.06 E-value=51 Score=21.34 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHh
Q 018714 290 KSVLDLGKRADNLSQGLDHLTKAVD 314 (351)
Q Consensus 290 ~~veel~~~~e~Le~gle~Le~~vd 314 (351)
..=++|.+++..||..+|.|.+++.
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666655543
No 17
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=35.61 E-value=63 Score=21.37 Aligned_cols=24 Identities=8% Similarity=0.322 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHH
Q 018714 290 KSVLDLGKRADNLSQGLDHLTKAV 313 (351)
Q Consensus 290 ~~veel~~~~e~Le~gle~Le~~v 313 (351)
..++.|..+++.+...++.||+++
T Consensus 23 ~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346666666666666767666653
No 18
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=34.77 E-value=1.4e+02 Score=22.05 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhhcCcchhHhHHHHHHHHHHHHHHH
Q 018714 236 FSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEV 275 (351)
Q Consensus 236 ~~~Lq~rv~~e~~~~~~~g~~~~l~El~~vd~av~~L~~~ 275 (351)
...||...-.||+.+- ..-.|+.+|.++...+...
T Consensus 12 ~leLQSALeaEIqAKQ-----~i~EELs~vr~~ni~~esk 46 (81)
T 1wt6_A 12 LRELQEALEEEVLTRQ-----SLSREMEAIRTDNQNFASQ 46 (81)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 3477888888887643 3557888888776555443
No 19
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.73 E-value=1e+02 Score=20.98 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHhHH
Q 018714 290 KSVLDLGKRADNLSQGLDHLTKAVDGF 316 (351)
Q Consensus 290 ~~veel~~~~e~Le~gle~Le~~vd~l 316 (351)
..++.|...-..|..-+..|..++..|
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 20
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.89 E-value=1.6e+02 Score=23.20 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHH
Q 018714 289 QKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVL 321 (351)
Q Consensus 289 ~~~veel~~~~e~Le~gle~Le~~vd~lFr~li 321 (351)
+..|++|+..+..|..-|++.+.+|+.+-+...
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 456889999999999999999999988887765
No 21
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=32.24 E-value=1.8e+02 Score=23.14 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 018714 288 LQKSVLDLGKRADNLSQGLDHLTKAVDG 315 (351)
Q Consensus 288 ~~~~veel~~~~e~Le~gle~Le~~vd~ 315 (351)
+...-.+|+..|+.++.-|++|++-|.=
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666553
No 22
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=31.80 E-value=1.2e+02 Score=22.97 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhh
Q 018714 289 QKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLR 332 (351)
Q Consensus 289 ~~~veel~~~~e~Le~gle~Le~~vd~lFr~li~~R~~LL~~l~ 332 (351)
.+.+..|....+.++..|+.|+++++.+=..+-..+..|=..+.
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35677777777777777777777777777777777777766664
No 23
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=31.14 E-value=89 Score=19.31 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhhc
Q 018714 290 KSVLDLGKRADNLSQG 305 (351)
Q Consensus 290 ~~veel~~~~e~Le~g 305 (351)
+.|++|..+-..|+.-
T Consensus 8 ~KVEeLl~~~~~Le~e 23 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNK 23 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHH
Confidence 3444444444333333
No 24
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=30.34 E-value=1.9e+02 Score=22.31 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018714 283 VEEELLQKSVLDLGKRAD 300 (351)
Q Consensus 283 e~~~~~~~~veel~~~~e 300 (351)
++.+.+...+++++.+++
T Consensus 46 eek~~I~~~i~el~~~L~ 63 (120)
T 2p32_A 46 EDKKKIEDKCDEILKWLD 63 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455666666666554
No 25
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=30.25 E-value=26 Score=23.85 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=24.1
Q ss_pred HHHhhchHHHHHHHhHHHHHHHHhHHHHHhhh
Q 018714 300 DNLSQGLDHLTKAVDGFFKIVLSGRDALLCNL 331 (351)
Q Consensus 300 e~Le~gle~Le~~vd~lFr~li~~R~~LL~~l 331 (351)
+.++.+|..+.++++.+...+.+.|..| |.+
T Consensus 3 ~~l~~sl~~l~~ql~sla~vvlQNRraL-DlL 33 (53)
T 1y4m_A 3 DTMAKALTTMQEQIDSLAAVVLQNRRGL-DML 33 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3467788888888899999999999874 443
No 26
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=29.63 E-value=99 Score=29.78 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 018714 260 NELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDG 315 (351)
Q Consensus 260 ~El~~vd~av~~L~~~i~~~~~~e~~~~~~~~veel~~~~e~Le~gle~Le~~vd~ 315 (351)
.|++++.+.-+.+...|.. .+.++.+++...+.+++..+..++..+..++++++.
T Consensus 42 ~~~~~l~~~~n~~sk~i~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 42 KRLQEVQTERNQVAKRVPK-APPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333322 122344456666667777777666666666666443
No 27
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=28.71 E-value=57 Score=19.88 Aligned_cols=16 Identities=13% Similarity=0.153 Sum_probs=6.6
Q ss_pred HHhhchHHHHHHHhHH
Q 018714 301 NLSQGLDHLTKAVDGF 316 (351)
Q Consensus 301 ~Le~gle~Le~~vd~l 316 (351)
.|-..-..|+.+|..+
T Consensus 12 eLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 12 XILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHH
Confidence 3333334444444443
No 28
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=27.24 E-value=1.3e+02 Score=19.93 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHH--hhchHHHHHHHhHHHHHHHHhHH
Q 018714 290 KSVLDLGKRADNL--SQGLDHLTKAVDGFFKIVLSGRD 325 (351)
Q Consensus 290 ~~veel~~~~e~L--e~gle~Le~~vd~lFr~li~~R~ 325 (351)
+.++||.+.+|.| |.|-+++...++.+.|+--.-|.
T Consensus 12 drldelekalealsaedghddvgqrlesllrrwnsrra 49 (60)
T 1pzq_A 12 DRLDELEKALEALSAEDGHDDVGQRLESLLRRWNSRRA 49 (60)
T ss_dssp HHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccc
Confidence 5677888888887 57888888888888887665554
No 29
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.02 E-value=94 Score=21.33 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhH
Q 018714 292 VLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGR 324 (351)
Q Consensus 292 veel~~~~e~Le~gle~Le~~vd~lFr~li~~R 324 (351)
+++|+..++.|+..-+.|..+|..|-..+..-+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555544444444333
No 30
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=26.94 E-value=2e+02 Score=21.61 Aligned_cols=13 Identities=0% Similarity=-0.125 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 018714 287 LLQKSVLDLGKRA 299 (351)
Q Consensus 287 ~~~~~veel~~~~ 299 (351)
.+...+++++.++
T Consensus 36 ~i~~~i~~l~~~L 48 (113)
T 1ud0_A 36 KILDKCNEIISWL 48 (113)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 31
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.72 E-value=4.1e+02 Score=25.14 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHH
Q 018714 287 LLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDAL 327 (351)
Q Consensus 287 ~~~~~veel~~~~e~Le~gle~Le~~vd~lFr~li~~R~~L 327 (351)
+.+.....|++.+...+.++..+++|...+-|.++.--.+|
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASL 434 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH
Confidence 45577778888888888888888888888888777655544
No 32
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.30 E-value=67 Score=19.61 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=7.9
Q ss_pred HHHHHhhchHHHHHHHhHH
Q 018714 298 RADNLSQGLDHLTKAVDGF 316 (351)
Q Consensus 298 ~~e~Le~gle~Le~~vd~l 316 (351)
++|.|-..=++|+.+|+.+
T Consensus 9 kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 9 KVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHH
Confidence 3333333334444444443
No 33
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.41 E-value=98 Score=18.75 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=3.9
Q ss_pred chHHHHHHHh
Q 018714 305 GLDHLTKAVD 314 (351)
Q Consensus 305 gle~Le~~vd 314 (351)
...+++.+|.
T Consensus 15 ~~~~le~EV~ 24 (33)
T 2wq1_A 15 KIYHNTNEIA 24 (33)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 3333444443
No 34
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=24.68 E-value=1.7e+02 Score=21.82 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHH
Q 018714 287 LLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRD 325 (351)
Q Consensus 287 ~~~~~veel~~~~e~Le~gle~Le~~vd~lFr~li~~R~ 325 (351)
++...+++|...=..|..-|+.|..++..|=..++..+.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 445566666666666666666666666655544444433
No 35
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.68 E-value=1.5e+02 Score=22.96 Aligned_cols=35 Identities=9% Similarity=0.141 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhH
Q 018714 290 KSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGR 324 (351)
Q Consensus 290 ~~veel~~~~e~Le~gle~Le~~vd~lFr~li~~R 324 (351)
..+++|...+..|...++.++++=|..|..|...=
T Consensus 18 ~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 18 ETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888889999999999998876543
No 36
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=22.29 E-value=1.6e+02 Score=18.66 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=15.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhchHH
Q 018714 279 EVDTVEEELLQKSVLDLGKRADNLSQGLDH 308 (351)
Q Consensus 279 ~~~~e~~~~~~~~veel~~~~e~Le~gle~ 308 (351)
+..+++-..+....+.+.+++..|...++.
T Consensus 16 gfspeelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334554444445555555555555555443
No 37
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=22.19 E-value=1.9e+02 Score=19.52 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc--hHHHHHHHhHH
Q 018714 286 ELLQKSVLDLGKRADNLSQG--LDHLTKAVDGF 316 (351)
Q Consensus 286 ~~~~~~veel~~~~e~Le~g--le~Le~~vd~l 316 (351)
++++..-++|++.++.|.-| +..++++|..+
T Consensus 28 eelkkkweelkkkieelggggevkkveeevkkl 60 (67)
T 1lq7_A 28 EELKKKWEELKKKIEELGGGGEVKKVEEEVKKL 60 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 34555555555555555443 22344444443
No 38
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.99 E-value=1.9e+02 Score=22.66 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhchHHHHHHHh
Q 018714 292 VLDLGKRADNLSQGLDHLTKAVD 314 (351)
Q Consensus 292 veel~~~~e~Le~gle~Le~~vd 314 (351)
++.+++.++.+..-+..+..+++
T Consensus 104 ~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 104 LQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 39
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.61 E-value=2e+02 Score=19.74 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 018714 287 LLQKSVLDLGKRADNLSQGLDHLTKAVDGF 316 (351)
Q Consensus 287 ~~~~~veel~~~~e~Le~gle~Le~~vd~l 316 (351)
.+...+++|...-..|+.-|+.|+.++..+
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666665554
No 40
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=21.60 E-value=2.6e+02 Score=20.96 Aligned_cols=18 Identities=6% Similarity=0.154 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhchHHHH
Q 018714 293 LDLGKRADNLSQGLDHLT 310 (351)
Q Consensus 293 eel~~~~e~Le~gle~Le 310 (351)
++++..++.|++.|++|.
T Consensus 39 ~El~~~l~el~e~l~DL~ 56 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLD 56 (95)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 41
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=21.50 E-value=1.7e+02 Score=23.59 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHH
Q 018714 291 SVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALL 328 (351)
Q Consensus 291 ~veel~~~~e~Le~gle~Le~~vd~lFr~li~~R~~LL 328 (351)
+.+-+.++++.++..++.+++.+..+-..+-.....+=
T Consensus 99 A~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 99 AISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555554444444444443
No 42
>1au1_A Interferon-beta; helical cytokine, immune system, cytokine; HET: BGC G6D; 2.20A {Homo sapiens} SCOP: a.26.1.3
Probab=20.70 E-value=3.3e+02 Score=22.58 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHhh---hhhHHhHHHH
Q 018714 65 RLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDI---SVNLLDICIA 113 (351)
Q Consensus 65 ~~~l~~L~~~h~~~~~Li~~~~lp~~~~~~k~vdeyLD~---SlkLLDvCna 113 (351)
.+++..+.++-+++-.|+..-..++ .|++..+|.++.+ -+.=|+.|-.
T Consensus 53 ~~a~~~~~emlqqif~LF~~~~ssa-~W~~t~le~fl~~L~qQl~~Le~C~~ 103 (166)
T 1au1_A 53 EDAALTIYEMLQNIFAIFRQDSSST-GWNETIVENLLANVYHQINHLKTVLE 103 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCGGG-TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCch-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999999995444333 4999998887544 3444555543
No 43
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.13 E-value=1.5e+02 Score=19.82 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=7.4
Q ss_pred HhHHHHHHHHHHHHH
Q 018714 259 LNELEAVDGSVKKLY 273 (351)
Q Consensus 259 l~El~~vd~av~~L~ 273 (351)
..|++.+......|+
T Consensus 18 ~~d~eaLk~E~~eLk 32 (53)
T 2yy0_A 18 NPEIELLRLELAEMK 32 (53)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 355555555444443
Done!