Query 018715
Match_columns 351
No_of_seqs 197 out of 1394
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1965 Sodium/hydrogen exchan 100.0 2.3E-51 5.1E-56 397.6 23.8 326 9-335 20-351 (575)
2 TIGR00840 b_cpa1 sodium/hydrog 100.0 1.1E-44 2.3E-49 363.2 32.9 303 25-333 10-320 (559)
3 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 2.8E-41 6E-46 338.3 33.7 276 35-327 8-285 (525)
4 COG0025 NhaP NhaP-type Na+/H+ 100.0 8.1E-41 1.8E-45 326.6 30.2 294 25-329 7-303 (429)
5 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 2E-36 4.2E-41 306.3 30.2 287 28-326 17-313 (810)
6 PRK05326 potassium/proton anti 100.0 8.7E-37 1.9E-41 309.4 27.1 288 23-328 4-294 (562)
7 KOG1966 Sodium/hydrogen exchan 100.0 2.6E-37 5.6E-42 298.5 10.6 301 27-334 45-353 (670)
8 COG3263 NhaP-type Na+/H+ and K 100.0 2.2E-33 4.9E-38 262.1 23.1 295 32-350 15-314 (574)
9 TIGR00932 2a37 transporter, mo 100.0 9.3E-29 2E-33 229.3 29.7 267 36-325 4-272 (273)
10 PF00999 Na_H_Exchanger: Sodiu 100.0 3.3E-30 7.2E-35 249.8 -1.2 272 36-326 8-281 (380)
11 KOG4505 Na+/H+ antiporter [Ino 99.9 2.6E-26 5.5E-31 208.2 21.6 299 38-348 27-339 (467)
12 COG0475 KefB Kef-type K+ trans 99.9 2.9E-24 6.3E-29 208.5 30.2 281 25-327 7-292 (397)
13 PRK03562 glutathione-regulated 99.9 5.8E-24 1.3E-28 217.2 28.6 277 26-327 6-287 (621)
14 PRK03659 glutathione-regulated 99.9 7.2E-23 1.6E-27 208.8 29.1 271 31-327 11-284 (601)
15 PLN03159 cation/H(+) antiporte 99.9 1.9E-22 4.2E-27 211.5 28.7 285 32-327 51-341 (832)
16 PRK10669 putative cation:proto 99.9 4.4E-22 9.4E-27 202.1 28.9 276 31-328 13-296 (558)
17 COG4651 RosB Kef-type K+ trans 99.6 1.8E-14 3.9E-19 130.0 18.5 282 22-328 4-296 (408)
18 KOG1650 Predicted K+/H+-antipo 99.2 1.7E-10 3.7E-15 120.3 14.2 293 27-326 25-328 (769)
19 PRK14853 nhaA pH-dependent sod 98.6 1E-05 2.2E-10 78.5 21.3 208 84-328 65-289 (423)
20 TIGR00773 NhaA Na+/H+ antiport 97.6 0.0018 3.8E-08 62.0 14.9 201 84-327 55-271 (373)
21 PF13593 DUF4137: SBF-like CPA 97.2 0.2 4.4E-06 47.4 22.5 150 79-235 26-180 (313)
22 PF03601 Cons_hypoth698: Conse 96.6 0.65 1.4E-05 43.7 24.6 140 47-199 24-166 (305)
23 PF06965 Na_H_antiport_1: Na+/ 96.4 0.095 2E-06 50.4 13.9 208 83-327 57-278 (378)
24 PRK09560 nhaA pH-dependent sod 96.3 0.11 2.3E-06 50.1 13.8 202 83-325 61-278 (389)
25 COG2855 Predicted membrane pro 96.0 0.13 2.8E-06 48.5 12.4 140 46-200 34-176 (334)
26 COG0786 GltS Na+/glutamate sym 95.9 1.7 3.7E-05 41.9 20.2 78 37-120 18-102 (404)
27 PF03616 Glt_symporter: Sodium 95.9 1.8 3.8E-05 42.0 22.5 78 36-118 15-98 (368)
28 PRK03659 glutathione-regulated 95.7 0.48 1.1E-05 49.0 16.5 103 85-194 266-372 (601)
29 TIGR00698 conserved hypothetic 95.7 2 4.3E-05 41.0 24.8 115 47-171 29-146 (335)
30 PF06826 Asp-Al_Ex: Predicted 95.7 0.18 3.8E-06 43.3 11.1 121 34-166 7-132 (169)
31 PF01758 SBF: Sodium Bile acid 95.7 0.52 1.1E-05 41.0 14.4 145 88-241 2-149 (187)
32 COG0385 Predicted Na+-dependen 95.7 1.8 4E-05 40.8 18.6 152 85-243 39-191 (319)
33 PRK03562 glutathione-regulated 95.5 0.64 1.4E-05 48.3 16.4 96 85-187 269-368 (621)
34 PRK10669 putative cation:proto 95.2 1.1 2.5E-05 45.8 17.1 107 85-198 277-387 (558)
35 PRK14854 nhaA pH-dependent sod 95.1 0.79 1.7E-05 44.1 14.2 203 83-325 58-273 (383)
36 PRK14856 nhaA pH-dependent sod 95.1 0.67 1.4E-05 45.5 13.9 166 84-288 71-247 (438)
37 COG2431 Predicted membrane pro 94.7 0.74 1.6E-05 42.1 12.3 89 51-156 108-201 (297)
38 PLN03159 cation/H(+) antiporte 94.6 0.71 1.5E-05 49.6 14.0 72 85-163 323-396 (832)
39 PRK14855 nhaA pH-dependent sod 94.4 0.85 1.9E-05 44.6 12.9 166 84-288 66-242 (423)
40 PF03956 DUF340: Membrane prot 94.3 0.25 5.5E-06 43.2 8.3 129 54-200 3-136 (191)
41 COG0475 KefB Kef-type K+ trans 94.2 0.93 2E-05 44.4 12.8 99 47-158 241-340 (397)
42 PRK09561 nhaA pH-dependent sod 94.1 2.2 4.7E-05 41.3 14.6 203 84-325 62-276 (388)
43 COG1346 LrgB Putative effector 93.8 4.8 0.0001 36.0 17.5 134 31-177 12-149 (230)
44 TIGR03082 Gneg_AbrB_dup membra 93.6 3.2 7E-05 35.0 13.6 104 34-151 5-110 (156)
45 PF05145 AmoA: Putative ammoni 93.3 2.8 6.1E-05 39.8 14.0 104 35-151 162-267 (318)
46 TIGR00210 gltS sodium--glutama 93.0 9.8 0.00021 37.3 22.9 31 261-291 228-263 (398)
47 TIGR00210 gltS sodium--glutama 92.8 7.3 0.00016 38.2 16.5 143 47-198 243-393 (398)
48 PF05982 DUF897: Domain of unk 92.4 4.5 9.7E-05 38.2 13.6 138 51-199 178-322 (327)
49 TIGR03802 Asp_Ala_antiprt aspa 92.1 1.3 2.7E-05 45.6 10.5 122 32-172 18-144 (562)
50 PRK04288 antiholin-like protei 91.9 3.9 8.3E-05 36.9 12.1 107 20-128 3-111 (232)
51 PRK04972 putative transporter; 91.6 3.2 6.9E-05 42.6 12.8 127 33-172 390-527 (558)
52 TIGR00841 bass bile acid trans 91.0 13 0.00029 34.5 18.8 22 90-111 14-35 (286)
53 PRK03818 putative transporter; 91.0 2 4.2E-05 44.1 10.6 105 26-136 8-115 (552)
54 TIGR00808 malonate_madM malona 90.3 12 0.00026 32.9 13.1 83 47-134 38-129 (254)
55 TIGR00832 acr3 arsenical-resis 88.9 22 0.00047 33.9 20.0 138 88-234 47-196 (328)
56 PF03390 2HCT: 2-hydroxycarbox 88.8 9.1 0.0002 37.5 12.7 153 23-183 245-405 (414)
57 COG3180 AbrB Putative ammonia 88.4 13 0.00028 35.6 13.1 107 32-151 192-300 (352)
58 TIGR03802 Asp_Ala_antiprt aspa 88.0 9.8 0.00021 39.1 13.1 106 51-169 417-529 (562)
59 TIGR00659 conserved hypothetic 87.8 14 0.00029 33.3 12.2 103 26-131 4-108 (226)
60 PF03812 KdgT: 2-keto-3-deoxyg 87.5 9.3 0.0002 35.9 11.3 129 43-174 4-136 (314)
61 PF03616 Glt_symporter: Sodium 87.0 22 0.00047 34.5 14.1 97 34-136 231-331 (368)
62 PRK04125 murein hydrolase regu 87.0 12 0.00025 31.1 10.5 110 24-136 7-117 (141)
63 COG3004 NhaA Na+/H+ antiporter 86.4 30 0.00066 32.8 14.2 97 91-199 72-178 (390)
64 TIGR01625 YidE_YbjL_dupl AspT/ 86.0 13 0.00028 31.4 10.5 111 49-169 21-136 (154)
65 PRK04972 putative transporter; 85.8 7.7 0.00017 39.8 10.9 97 32-147 20-119 (558)
66 KOG3826 Na+/H+ antiporter [Ino 84.9 1.5 3.3E-05 39.1 4.6 78 85-168 159-236 (252)
67 PRK01658 holin-like protein; V 84.2 20 0.00044 28.9 10.5 109 25-136 5-114 (122)
68 PRK12460 2-keto-3-deoxyglucona 83.9 25 0.00055 33.1 12.4 58 89-153 197-254 (312)
69 COG2985 Predicted permease [Ge 83.6 11 0.00023 37.7 10.1 137 18-170 359-509 (544)
70 PRK05326 potassium/proton anti 82.7 8 0.00017 39.7 9.6 32 85-116 275-306 (562)
71 PF05684 DUF819: Protein of un 82.3 51 0.0011 32.1 23.9 86 47-138 23-108 (378)
72 PF04172 LrgB: LrgB-like famil 81.5 25 0.00053 31.4 10.9 95 36-133 4-100 (215)
73 PRK01821 hypothetical protein; 81.4 28 0.00061 28.5 10.4 109 25-136 10-119 (133)
74 COG3493 CitS Na+/citrate sympo 81.2 55 0.0012 31.7 13.9 135 31-172 271-410 (438)
75 COG0786 GltS Na+/glutamate sym 81.1 57 0.0012 31.8 14.3 161 25-195 219-393 (404)
76 PRK03818 putative transporter; 80.2 19 0.00042 36.9 11.2 104 52-168 403-514 (552)
77 TIGR00783 ccs citrate carrier 79.3 41 0.00088 32.3 12.2 153 22-183 177-338 (347)
78 PRK10711 hypothetical protein; 77.6 32 0.00069 31.0 10.4 93 33-127 12-105 (231)
79 TIGR00698 conserved hypothetic 74.2 22 0.00047 34.1 9.0 39 85-123 281-319 (335)
80 PRK12460 2-keto-3-deoxyglucona 74.2 71 0.0015 30.2 12.1 122 47-175 8-132 (312)
81 COG2985 Predicted permease [Ge 73.5 25 0.00054 35.1 9.2 83 85-174 60-147 (544)
82 COG3493 CitS Na+/citrate sympo 70.5 1.1E+02 0.0024 29.8 17.7 62 84-152 111-172 (438)
83 TIGR00400 mgtE Mg2+ transporte 58.3 2E+02 0.0043 28.6 12.8 16 184-199 428-443 (449)
84 PF03812 KdgT: 2-keto-3-deoxyg 58.2 1.3E+02 0.0027 28.5 10.3 39 87-125 200-238 (314)
85 PF00999 Na_H_Exchanger: Sodiu 57.0 5.2 0.00011 38.5 1.2 106 44-163 229-338 (380)
86 TIGR00793 kdgT 2-keto-3-deoxyg 53.3 2E+02 0.0044 27.1 11.6 39 87-125 200-238 (314)
87 COG0798 ACR3 Arsenite efflux p 52.4 2.2E+02 0.0047 27.3 19.6 146 85-243 52-202 (342)
88 COG2855 Predicted membrane pro 51.5 99 0.0021 29.5 8.6 39 85-123 283-321 (334)
89 KOG2718 Na+-bile acid cotransp 50.4 47 0.001 32.2 6.4 106 86-197 115-221 (371)
90 KOG1650 Predicted K+/H+-antipo 49.1 56 0.0012 35.0 7.4 73 85-165 311-383 (769)
91 PF06912 DUF1275: Protein of u 45.9 2E+02 0.0044 25.0 11.5 30 176-205 3-33 (209)
92 PF03788 LrgA: LrgA family; I 45.1 1.1E+02 0.0024 23.4 6.6 44 87-130 50-93 (96)
93 TIGR00946 2a69 he Auxin Efflux 45.0 2.7E+02 0.0058 26.1 14.1 39 83-121 210-248 (321)
94 COG1380 Putative effector of m 44.6 1.7E+02 0.0037 23.8 9.5 109 25-136 6-115 (128)
95 PF11286 DUF3087: Protein of u 41.0 2.1E+02 0.0045 24.4 8.1 95 100-197 5-116 (165)
96 PF13194 DUF4010: Domain of un 39.3 2.7E+02 0.0059 24.6 15.3 50 143-193 20-69 (211)
97 COG3329 Predicted permease [Ge 38.4 82 0.0018 29.7 5.7 142 49-197 216-364 (372)
98 TIGR00946 2a69 he Auxin Efflux 36.0 3.5E+02 0.0077 25.2 10.1 22 83-104 40-61 (321)
99 PRK09903 putative transporter 31.4 4.4E+02 0.0095 24.6 12.1 27 83-109 201-227 (314)
100 PF03390 2HCT: 2-hydroxycarbox 30.7 5.4E+02 0.012 25.4 24.5 62 84-152 94-155 (414)
101 PF05982 DUF897: Domain of unk 29.5 5E+02 0.011 24.7 12.3 84 84-174 28-114 (327)
102 TIGR00793 kdgT 2-keto-3-deoxyg 28.6 1.5E+02 0.0033 27.9 5.8 126 47-175 8-137 (314)
103 PF03601 Cons_hypoth698: Conse 27.9 62 0.0013 30.5 3.3 31 85-115 273-303 (305)
104 PRK01844 hypothetical protein; 26.0 2.6E+02 0.0057 20.3 5.7 16 223-238 11-26 (72)
105 TIGR02359 thiW thiW protein. L 25.2 4.2E+02 0.0091 22.4 9.2 18 50-67 33-50 (160)
106 PF06123 CreD: Inner membrane 23.6 7.4E+02 0.016 24.6 10.5 39 27-67 302-340 (430)
107 TIGR02454 CbiQ_TIGR cobalt ABC 23.5 4.6E+02 0.01 22.3 9.8 19 156-174 111-129 (198)
108 PF12911 OppC_N: N-terminal TM 23.3 1.5E+02 0.0033 19.7 3.8 17 103-119 9-25 (56)
109 COG0306 PitA Phosphate/sulphat 23.3 5.7E+02 0.012 24.4 8.8 56 212-267 129-189 (326)
110 cd03381 PAP2_glucose_6_phospha 22.4 2.1E+02 0.0046 25.9 5.5 62 217-278 131-192 (235)
111 PF06295 DUF1043: Protein of u 21.6 84 0.0018 25.5 2.6 19 223-241 3-21 (128)
112 PRK09903 putative transporter 21.5 6.7E+02 0.014 23.3 13.3 41 83-124 38-78 (314)
113 PF06610 DUF1144: Protein of u 21.2 4E+02 0.0086 22.0 6.2 58 183-243 80-140 (143)
114 TIGR02230 ATPase_gene1 F0F1-AT 21.1 3.4E+02 0.0075 21.0 5.7 34 31-64 54-89 (100)
115 PF15179 Myc_target_1: Myc tar 20.9 2E+02 0.0043 24.9 4.7 25 219-243 22-46 (197)
116 PRK00523 hypothetical protein; 20.7 3.4E+02 0.0074 19.7 5.7 16 223-238 12-27 (72)
117 COG5336 Uncharacterized protei 20.3 2.2E+02 0.0048 22.5 4.4 36 29-66 52-87 (116)
118 PF03672 UPF0154: Uncharacteri 20.2 2.8E+02 0.0061 19.6 4.6 15 224-238 5-19 (64)
No 1
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-51 Score=397.61 Aligned_cols=326 Identities=52% Similarity=0.843 Sum_probs=298.9
Q ss_pred HHHhhhhcccCccchHHHHHHHHHHHHHHHHHHHHhhcc--cCChhHHHHHHHHHHHHHHHhhcCCCCc---cccccChh
Q 018715 9 MERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENR--WMNESITALIIGLCTGIVILLTTNGTSS---HVLMFSED 83 (351)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~i~lL~~~~~~~~~l~~~~--~lP~~~~~ll~GillG~~~~~~~~~~~~---~~~~~~~~ 83 (351)
++.+.+-.++||++.+.+++++.+++++++.+|++++++ ++||.+..+++|+++|.+......+... +...++|+
T Consensus 20 ~~~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~ 99 (575)
T KOG1965|consen 20 ISSDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPD 99 (575)
T ss_pred cccccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEeccc
Confidence 344555667899999999999999999999999999765 8999999999999999998887777666 66789999
Q ss_pred HHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHH
Q 018715 84 LFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVC 163 (351)
Q Consensus 84 ~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~ 163 (351)
.|+.+.+|||+|++|++++.+.++||..++..++++|+.+++.+++..++++.......+++|.+|+++||++|||||+.
T Consensus 100 ~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVt 179 (575)
T KOG1965|consen 100 LFFLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVT 179 (575)
T ss_pred HHHHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchH
Confidence 99999999999999999999999999999999999999999999999988874433334899999999999999999999
Q ss_pred HHHHhcccCC-chhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 164 TLQVLNQDET-PLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKK 242 (351)
Q Consensus 164 v~~il~~~~~-~~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~ 242 (351)
+++++++.++ |+++.+++|||++||++++|+++.+..+..++.+..+..+.+..++..+.++..+|++.|++.++++|+
T Consensus 180 vLaIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~ 259 (575)
T KOG1965|consen 180 VLAIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKF 259 (575)
T ss_pred HHHHHHHhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997 689999999999999999999999999877665554555788999999999999999999999999999
Q ss_pred HhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018715 243 LYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVG 322 (351)
Q Consensus 243 ~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG 322 (351)
.+.+ |.+..|..+.+.++|.+|++||.+|+||+++++.||+++++|.++|.++++|...+++|+.+++++|+++|.|+|
T Consensus 260 ~~l~-~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~G 338 (575)
T KOG1965|consen 260 LYLR-RTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLG 338 (575)
T ss_pred HHhc-CCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9765 778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhh
Q 018715 323 MDALDIEKWRVVR 335 (351)
Q Consensus 323 ~~i~~~~~~~~~~ 335 (351)
+.+..+++|.+.+
T Consensus 339 l~~f~~~k~~~~~ 351 (575)
T KOG1965|consen 339 LSAFDFQKHVYKS 351 (575)
T ss_pred HHHhcccceeeec
Confidence 9998888887764
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=1.1e-44 Score=363.18 Aligned_cols=303 Identities=31% Similarity=0.542 Sum_probs=253.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCCh
Q 018715 25 SMNLFVALLCACIVIGHLLEEN-RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKK 103 (351)
Q Consensus 25 ~l~~~i~lL~~~~~~~~~l~~~-~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~ 103 (351)
.+.+++.+..++.+.-++..|+ +++|+++..+++|+++|+....... .+...++|+.+..+++|+|+|++|+++|+
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~---~~~~~l~~~lf~~~~LPpIlFe~g~~l~~ 86 (559)
T TIGR00840 10 EFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH---IDPPTLDSSYFFLYLLPPIVLDAGYFMPQ 86 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC---CccCCcCHHHHHHHHHHHHHHHHHhcCCH
Confidence 3444555555565655666654 4699999999999999987643322 12357889999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCCHHHHHHHhhhhccccHHHHHHHhcccCCc-hhHHHH
Q 018715 104 KQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMN--IGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLV 180 (351)
Q Consensus 104 ~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~--~~~~~~~~alllgailsaTdp~~v~~il~~~~~~-~l~~~l 180 (351)
+++|||+++++.++++|++++++++|..+|++.+..+ ..+++|..|+++||++|||||+++.+++|+.+.| |+.+++
T Consensus 87 ~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L~~ll 166 (559)
T TIGR00840 87 RNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIII 166 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcchhhhe
Confidence 9999999999999999999999999999987654322 2367999999999999999999999999999987 799999
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHH
Q 018715 181 FGEGVVNDATSVVLFNAIQSFDLS---HINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALM 257 (351)
Q Consensus 181 ~gEs~lnD~~aivlf~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~ 257 (351)
+|||++||++++++|..+.++... +.+..++...+..++...++|+++|.++|++..++.|+.. +.+..+..++
T Consensus 167 ~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~---~~~~~e~~l~ 243 (559)
T TIGR00840 167 FGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTH---HIRQIEPLFV 243 (559)
T ss_pred ehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhHHHHH
Confidence 999999999999999988887642 2222334445566677778899999999999999999873 3345788899
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-cchhh
Q 018715 258 ILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI-EKWRV 333 (351)
Q Consensus 258 l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~~-~~~~~ 333 (351)
+.++|++|.+||.+|.||++|+++||++++++.++|.+++++...+++|+.+++++|+++|+++|+++... ..|++
T Consensus 244 l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~ 320 (559)
T TIGR00840 244 FLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNW 320 (559)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 99999999999999999999999999999999888888888889999999999999999999999988543 34554
No 3
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=2.8e-41 Score=338.35 Aligned_cols=276 Identities=20% Similarity=0.370 Sum_probs=238.4
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHH
Q 018715 35 ACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIM 114 (351)
Q Consensus 35 ~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~ 114 (351)
++......+.+|.++|+++++++.|+++||... .. ..+++|+.+..+++|+++|++|+++|++++||+++++.
T Consensus 8 ~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~-----~~--~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~ 80 (525)
T TIGR00831 8 MLATAVAVTVKFIRLPYPIALILAGLLLGLAGL-----LP--EVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIA 80 (525)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHhccc-----cC--CCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334444566677999999999999999997422 11 24578888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCCc-hhHHHHHHHhhhhhHHHHH
Q 018715 115 LFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLVFGEGVVNDATSVV 193 (351)
Q Consensus 115 ~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~~-~l~~~l~gEs~lnD~~aiv 193 (351)
.+++++++++++.++..+|++. ++||..|+++|++++||||+++.+++|+.+.| |+.++++|||++||+++++
T Consensus 81 ~la~~~vlit~~~v~~~~~~~~------~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~~alv 154 (525)
T TIGR00831 81 LIAFLLVVVTTVVVGFSLNWIL------GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALV 154 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcchHHHH
Confidence 9999999999999998888854 89999999999999999999999999999988 7999999999999999999
Q ss_pred HHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhcc
Q 018715 194 LFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYL 273 (351)
Q Consensus 194 lf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~ 273 (351)
+|.+...+..+..+ .+..+....+++..++|+++|.++|++..++.|+. .+++..+..++++++|++|++||.+|.
T Consensus 155 lf~~~~~~~~~~~~-~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~---~~~~~~~~~l~l~~~~~~y~lAe~lg~ 230 (525)
T TIGR00831 155 VFAIAVAVALGKGV-FDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAK---IDDPLVEIALTILAPFAGFLLAERFHF 230 (525)
T ss_pred HHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99988877653211 12344567788889999999999999998877653 244556788999999999999999999
Q ss_pred chHHHHHHHHHhhhccccc-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 018715 274 SGILTVFFCGIVMSHYTWH-NVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD 327 (351)
Q Consensus 274 Sgilav~~~Gl~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~ 327 (351)
||++|++++|++++|++++ +.+++.+...+++|+.+++++|+++|+++|++++.
T Consensus 231 SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~ 285 (525)
T TIGR00831 231 SGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPG 285 (525)
T ss_pred CHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998766 66777888889999999999999999999999975
No 4
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-41 Score=326.58 Aligned_cols=294 Identities=22% Similarity=0.335 Sum_probs=245.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChH
Q 018715 25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK 104 (351)
Q Consensus 25 ~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~ 104 (351)
.+.....++..+...+...+ ++++|+...+++.|++.||......+ .....+++.+..+++|+++|++|+|+|++
T Consensus 7 ~~~~~~lil~l~~~~~~~~~-~l~~~~i~~~ll~g~i~g~~~l~~~~----~~~~~~~el~~~l~l~ilLf~~g~~l~~~ 81 (429)
T COG0025 7 LLFLLLLILLLGLLVSVLAG-RLLLPEIPLLLLLGLLGGPPGLNLIS----PDLELDPELFLVLFLAILLFAGGLELDLR 81 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHhhhhhcccc----ccccCChHHHHHHHHHHHHHHhHhcCCHH
Confidence 33334444455555555555 48899999999999999976543221 11456788899999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCCc-hhHHHHHHH
Q 018715 105 QFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLVFGE 183 (351)
Q Consensus 105 ~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~~-~l~~~l~gE 183 (351)
++||+++++..++++++++|+..++...|+++| ++++..|+++||+++||||+++.+++|+.+.| |+.++++||
T Consensus 82 ~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-----~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri~~iL~gE 156 (429)
T COG0025 82 ELRRVWRSILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGE 156 (429)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999874 89999999999999999999999999999988 799999999
Q ss_pred hhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCchhHHHHHHHHH
Q 018715 184 GVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRH-STDREVALMILMAY 262 (351)
Q Consensus 184 s~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~-~~~~~~~l~l~~~~ 262 (351)
|++||+++++.|.+..+...++.+. +..+....+++...+|+.+|.+.|+...++.++...++. ++..+..+++..++
T Consensus 157 Sl~ND~~giv~f~~~l~~~~~~~~~-~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~ 235 (429)
T COG0025 157 SLLNDGVGIVLFKVALAALLGTGAF-SLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAF 235 (429)
T ss_pred HHhhhHHHHHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 9999999999999888876643221 134577889999999999999999999999999853221 24467889999999
Q ss_pred HHHHHHHhhccchHHHHHHHHHhhhcccccCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 018715 263 LSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTE-SSRVTTKHAFATLSFVAEIFIFLYVGMDALDIE 329 (351)
Q Consensus 263 ~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~~~ 329 (351)
.+|..||.+|.||++|++++|++.++....+.++ +.|.+.++|||.+++++|.++|+++|.+++...
T Consensus 236 ~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~ 303 (429)
T COG0025 236 AAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSL 303 (429)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999999999998433334333 457788899999999999999999999996543
No 5
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=2e-36 Score=306.30 Aligned_cols=287 Identities=17% Similarity=0.209 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhH---HHHHhhHHHhhHhhhcCChH
Q 018715 28 LFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDL---FFIYLLPPIIFNAGFQVKKK 104 (351)
Q Consensus 28 ~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~---~~~i~L~~ilF~aGl~l~~~ 104 (351)
.+...+++..+++.++++|.++|+++.++++|+++||......+... ...+... +.++++++++|.+|+++|++
T Consensus 17 ~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~---~g~~d~i~leIteIvL~I~LFa~Gl~L~~~ 93 (810)
T TIGR00844 17 CVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS---WGNTDSITLEISRILLCLQVFAVSVELPRK 93 (810)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh---cccchHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33345566668888888789999999999999999997643222110 1111111 77899999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcc---cCCc-hhHHHH
Q 018715 105 QFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQ---DETP-LLYSLV 180 (351)
Q Consensus 105 ~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~---~~~~-~l~~~l 180 (351)
++|++|+.+..++++++.++++++++++|++++ +++|..|+++|||++||||+.+.++++. .+.| |+++++
T Consensus 94 ~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-----GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~rLR~lL 168 (810)
T TIGR00844 94 YMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-----GLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGHLRNLL 168 (810)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChHHHhHH
Confidence 999999999999999999999999999888853 8999999999999999999999999983 3566 699999
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhh-c-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCchhHHHH
Q 018715 181 FGEGVVNDATSVVLFNAIQSFDLS-H-INLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRH-STDREVALM 257 (351)
Q Consensus 181 ~gEs~lnD~~aivlf~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~-~~~~~~~l~ 257 (351)
++||++||++|++++.+.+.+... + .......+.+..+++++++|+++|+++|++..++.++...++. ..+....+.
T Consensus 169 ~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~ 248 (810)
T TIGR00844 169 SCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFY 248 (810)
T ss_pred hhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence 999999999999988866555431 1 1111112246788999999999999999999999998752211 223345567
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018715 258 ILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDAL 326 (351)
Q Consensus 258 l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~ 326 (351)
+++++.+|..++.+|.||++|+|++|++++|..+. ..+.+..++|+.++.+++..+|+++|+.++
T Consensus 249 LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~----~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~ 313 (810)
T TIGR00844 249 LILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWF----AQKTHESNVSNVIDVLLNYAYFVYLGSILP 313 (810)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHhcccch----hhhHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 88899999999999999999999999999986542 112234569999999999999999999985
No 6
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=8.7e-37 Score=309.36 Aligned_cols=288 Identities=20% Similarity=0.209 Sum_probs=231.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCC
Q 018715 23 VVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK 102 (351)
Q Consensus 23 ~~~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~ 102 (351)
+..+++...++++...+...+.||.++|..++++++|+++||......+..+. + ..+.+.++++++++|++|+++|
T Consensus 4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~---~-~~~~i~~l~L~~iLF~~Gl~~~ 79 (562)
T PRK05326 4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNY---P-LAYLVGNLALAVILFDGGLRTR 79 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcH---H-HHHHHHHHHHHHHHHcCccCCC
Confidence 34445455444444444444555689999999999999999854321110100 1 1245889999999999999999
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccC--Cc-hhHHH
Q 018715 103 KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDE--TP-LLYSL 179 (351)
Q Consensus 103 ~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~--~~-~l~~~ 179 (351)
++.+||+++++..+++.++++++..++..+++++ +++|..|+++|+++++|||+++.+++++.+ .+ |++++
T Consensus 80 ~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~------g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~ 153 (562)
T PRK05326 80 WSSFRPALGPALSLATLGVLITAGLTGLFAHWLL------GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVAST 153 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhH
Confidence 9999999999999999999999988888888887 899999999999999999999999999988 66 79999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHH
Q 018715 180 VFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMIL 259 (351)
Q Consensus 180 l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~ 259 (351)
+++||.+||+++++++..+.++..++.++.++ ..+..+++++.+++++|+++|+...++.++.+ ++.++....++++
T Consensus 154 l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~--~~~~~~~~i~~l~ 230 (562)
T PRK05326 154 LEIESGSNDPMAVFLTITLIELITGGETGLSW-GFLLLFLQQFGLGALIGLLGGWLLVQLLNRIA--LPAEGLYPILVLA 230 (562)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHhCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CchhhHHHHHHHH
Confidence 99999999999999999887776433222222 23567788899999999999999998888763 2234456788899
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 018715 260 MAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI 328 (351)
Q Consensus 260 ~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~~ 328 (351)
.++++|++||.+|.||++|++++|++++|.+. +.++..+++++.+++++++++|+++|+.+++.
T Consensus 231 ~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~-----~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~ 294 (562)
T PRK05326 231 GALLIFALTAALGGSGFLAVYLAGLVLGNRPI-----RHRHSILRFFDGLAWLAQIGMFLVLGLLVTPS 294 (562)
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999997643 23345778999999999999999999999654
No 7
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-37 Score=298.51 Aligned_cols=301 Identities=31% Similarity=0.554 Sum_probs=252.0
Q ss_pred HHHHHHHHHHHHHHHHHhh-cccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHH
Q 018715 27 NLFVALLCACIVIGHLLEE-NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQ 105 (351)
Q Consensus 27 ~~~i~lL~~~~~~~~~l~~-~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~ 105 (351)
.+++++..++.+.-|...+ +..+|+++.++++|+++|.+........ ...++|+.|+.+.||||++++|+-++.|.
T Consensus 45 ~lwil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~---~~~L~s~vFFlyLLPPIvlDAGYfMp~r~ 121 (670)
T KOG1966|consen 45 TLWILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIA---PFFLESDVFFLYLLPPIVLDAGYFMPNRA 121 (670)
T ss_pred HHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccc---cccccccchhhhhcCHHHhcccccCccHH
Confidence 3344444445554455544 3459999999999999998876543222 24567889999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--CCHHHHHHHhhhhccccHHHHHHHhcccCCch-hHHHHHH
Q 018715 106 FFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGT--LKIGDYLAIGAIFAATDSVCTLQVLNQDETPL-LYSLVFG 182 (351)
Q Consensus 106 l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~--~~~~~alllgailsaTdp~~v~~il~~~~~~~-l~~~l~g 182 (351)
|.+|...+++.|++|++..++.++..+|.+. ..++-+ .+...-+++|+++|+.||++|+++++|.+..+ +..++.|
T Consensus 122 Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~-~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihVNe~LfI~VFG 200 (670)
T KOG1966|consen 122 FFENLGTILLFAVVGTIWNAFTIGASLYAIS-LSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHVNEVLFIIVFG 200 (670)
T ss_pred HHhccchhhhHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhccccEEEeeeeh
Confidence 9999999999999999999998887776543 333323 66889999999999999999999999999775 8999999
Q ss_pred HhhhhhHHHHHHHHHHHHhhhh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHH
Q 018715 183 EGVVNDATSVVLFNAIQSFDLS---HINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMIL 259 (351)
Q Consensus 183 Es~lnD~~aivlf~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~ 259 (351)
||++||++.+++|+.+.++..- +....+....+.+++...+||+++|+++|++.++..|+. ++-+..|+.+.+.
T Consensus 201 ESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft---~~vrviePvfif~ 277 (670)
T KOG1966|consen 201 ESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFT---KHVRVLEPVFIFL 277 (670)
T ss_pred hhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhh---cceeeecchhhhh
Confidence 9999999999999999888653 222223334566777778999999999999999999976 4666789999999
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc-chhhh
Q 018715 260 MAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIE-KWRVV 334 (351)
Q Consensus 260 ~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~~~-~~~~~ 334 (351)
++|++|..||.+|+||++|..+||+.+++|-+.|+++++....+.+.++++...|+++|+++|.+..+-+ .|++.
T Consensus 278 ~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd~~ 353 (670)
T KOG1966|consen 278 LPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWDFA 353 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceeehh
Confidence 9999999999999999999999999999999999999999999999999999999999999999997653 35554
No 8
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-33 Score=262.06 Aligned_cols=295 Identities=20% Similarity=0.235 Sum_probs=244.5
Q ss_pred HHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccCh----hHHHHHhhHHHhhHhhhcCChHHHH
Q 018715 32 LLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE----DLFFIYLLPPIIFNAGFQVKKKQFF 107 (351)
Q Consensus 32 lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~----~~~~~i~L~~ilF~aGl~l~~~~l~ 107 (351)
+...+++.+.+.. |.+.|-....+.+|++.| .++... +++|+ ....++++.+|+|++|++++++.+|
T Consensus 15 lvivsif~s~~ss-rfGvP~LllFl~iGm~aG------~dGlg~--I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r 85 (574)
T COG3263 15 LVIVSIFSSLISS-RFGVPLLLLFLSIGMLAG------VDGLGG--IEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFR 85 (574)
T ss_pred HHHHHHHHHHHHH-HcCchHHHHHHHHHHHcC------CCcccc--cccCccHHHHHHHHHHHHHHhhcCccCCcHHHHH
Confidence 3444555555555 599999999999999998 344331 33333 3466899999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCCc-hhHHHHHHHhhh
Q 018715 108 RNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLVFGEGVV 186 (351)
Q Consensus 108 ~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~~-~l~~~l~gEs~l 186 (351)
...++.+.++.+|+++|+.+++..++|++ +++|.+++++||++.+||.++|.+++++.+.+ |+++++|-||.-
T Consensus 86 ~a~~palsLATlGVl~Ts~Ltg~aA~~ll------~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv~stLEiESGt 159 (574)
T COG3263 86 VAAGPALSLATLGVLITSGLTGVAAAYLL------NLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVASTLEIESGS 159 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHhhccccHHHHHHHHccCChhhhhhhhEEeecCC
Confidence 99999999999999999999999999999 99999999999999999999999999988865 899999999999
Q ss_pred hhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHH
Q 018715 187 NDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYM 266 (351)
Q Consensus 187 nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~ 266 (351)
||++|+.+.-.++.+..++.++.++. .+..+++++..|+++|...|+...+..+|.. -++...+.+.++..++.|.
T Consensus 160 NDPmAvfLTitlieli~~get~l~~~-~ll~f~~q~glG~l~G~~gg~l~~~~Inr~n---Ld~GL~pil~la~~Ll~fs 235 (574)
T COG3263 160 NDPMAVFLTITLIELIAGGETNLSWG-FLLGFLQQFGLGLLLGLGGGKLLLQLINRIN---LDSGLYPILALAGGLLIFS 235 (574)
T ss_pred CCceeeehhHHHHHHHhccccccCHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---cccchhHHHHHHHHHHHHH
Confidence 99999999988888766553333443 4445899999999999999999999999873 3456778999999999999
Q ss_pred HHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhhhcccceeeeeec
Q 018715 267 LAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLPVQAIPSC 346 (351)
Q Consensus 267 ~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~~~~~~~~~~~~~~~~i~~~ 346 (351)
+++.+|.||++|+++||+..+|.+ -+.|+...+|.|-++++++..+|...|...+|.+.|..-.-+..+-.....
T Consensus 236 ~t~aiGGsG~LaVYl~Gll~GN~~-----i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mif 310 (574)
T COG3263 236 LTGAIGGSGILAVYLAGLLLGNRP-----IRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIF 310 (574)
T ss_pred HHHHhcCcccHHHHHHHHHhCCCc-----chhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHH
Confidence 999999999999999999999654 355677889999999999999999999999998888764333333333333
Q ss_pred ccCC
Q 018715 347 MGTP 350 (351)
Q Consensus 347 ~~~~ 350 (351)
+++|
T Consensus 311 vaRP 314 (574)
T COG3263 311 VARP 314 (574)
T ss_pred HHhH
Confidence 4444
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.97 E-value=9.3e-29 Score=229.33 Aligned_cols=267 Identities=18% Similarity=0.223 Sum_probs=206.6
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHH
Q 018715 36 CIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIML 115 (351)
Q Consensus 36 ~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~ 115 (351)
+.+.+... ||.++|+++++++.|+++||......+ +.+ .-+.+.++++.+++|.+|+|+|++++||++++...
T Consensus 4 a~~~~~l~-~~l~lP~~v~~il~GillGp~~lg~i~--~~~----~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~ 76 (273)
T TIGR00932 4 AVLAVPLS-RRLGIPSVLGYLLAGVLIGPSGLGLIS--NVE----GVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFG 76 (273)
T ss_pred HHHHHHHH-HHhCCCHHHHHHHHHHHhCcccccCCC--ChH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34445554 459999999999999999986432211 111 12347899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCC-c-hhHHHHHHHhhhhhHHHHH
Q 018715 116 FGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET-P-LLYSLVFGEGVVNDATSVV 193 (351)
Q Consensus 116 la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~-~-~l~~~l~gEs~lnD~~aiv 193 (351)
++..+++++++.++...++.+ ++++..++++|+++++|||+++.++++|.+. + +.++++.+|+.+||..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~ 150 (273)
T TIGR00932 77 VGVLQVLVPGVLLGLLLGHLL------GLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVP 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHH
Confidence 999999999777777666666 8999999999999999999999999999884 3 7999999999999999999
Q ss_pred HHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhcc
Q 018715 194 LFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYL 273 (351)
Q Consensus 194 lf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~ 273 (351)
.+.+......+... +...............++.+.+.++...+..|+... +++++.+...++..++..+.++|.+|.
T Consensus 151 ~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~la~~~g~ 227 (273)
T TIGR00932 151 LLALLPLLATSAST--EHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAE-LRPSELFTAGSLLLMFGSAYFADLLGL 227 (273)
T ss_pred HHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHhCC
Confidence 99988766543211 111122233344445556666777777777777643 233456677888999999999999999
Q ss_pred chHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018715 274 SGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDA 325 (351)
Q Consensus 274 Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i 325 (351)
|+++|++++|++++|..+ +++.++..+.+..++.+++|+++|+++
T Consensus 228 s~~lgaf~aGl~~~~~~~-------~~~l~~~l~~~~~~f~plFF~~~G~~~ 272 (273)
T TIGR00932 228 SMALGAFLAGVVLSESEY-------RHKLESDLEPIGGVLLPLFFISVGMSV 272 (273)
T ss_pred cHHHHHHHHHHHHcCCch-------HHHHHHHHHhHHHHHHHHHHHHhCccC
Confidence 999999999999997432 123445556666899999999999876
No 10
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.95 E-value=3.3e-30 Score=249.76 Aligned_cols=272 Identities=24% Similarity=0.354 Sum_probs=57.1
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHH
Q 018715 36 CIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIML 115 (351)
Q Consensus 36 ~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~ 115 (351)
+.+.+. +.||.++|+.+++++.|+++||......++. ....+.+.++++++++|++|+|+|.+++||++++...
T Consensus 8 ~~~~~~-l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~-----~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~ 81 (380)
T PF00999_consen 8 AFVAGI-LFRRLGIPSIIGYILVGIVLGPSGLGLLEPD-----NPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALA 81 (380)
T ss_dssp ----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------
T ss_pred HHHHHH-HHHHhCCCHHHHHHHheeehhhhhhhhccch-----hhHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 333444 4667999999999999999999765422111 1233558999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhccc-CCc-hhHHHHHHHhhhhhHHHHH
Q 018715 116 FGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD-ETP-LLYSLVFGEGVVNDATSVV 193 (351)
Q Consensus 116 la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~-~~~-~l~~~l~gEs~lnD~~aiv 193 (351)
.++.++.+++..++...++.+ ...++++..++++|+++++|||+.+.++++|. +.+ +.++++.+|+.+||..+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~ 158 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFL---FILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAII 158 (380)
T ss_dssp -----------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTT
T ss_pred cccceeeehhhHHHHHHHHhh---ccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhh
Confidence 999999999877677766421 00189999999999999999999999999765 445 7999999999999999999
Q ss_pred HHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhcc
Q 018715 194 LFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYL 273 (351)
Q Consensus 194 lf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~ 273 (351)
++.+..+..+.+ ...+..+....++.....+.+.|...+++..+..|+. +++++.+...+++.++..|+.+|.+|.
T Consensus 159 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~g~ 234 (380)
T PF00999_consen 159 LLSILISLAQAS-GQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEILGL 234 (380)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred hhhhhhhhhccc-ccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhccccccccc
Confidence 999888776221 1223333444455555555555555554444444432 245567788999999999999999999
Q ss_pred chHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018715 274 SGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDAL 326 (351)
Q Consensus 274 Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~ 326 (351)
|++++++++|+.+++.+.++ +.+++.+++++ .++++++|+++|++++
T Consensus 235 s~~l~af~~Gl~~~~~~~~~---~~~~~l~~~~~---~~~~~lfF~~iG~~~~ 281 (380)
T PF00999_consen 235 SGILGAFIAGLILSNSPFAE---RLEEKLESFWY---GFFIPLFFVFIGMSLD 281 (380)
T ss_dssp -----------------------------------------------------
T ss_pred cccceeeeeehccccccccc---hhhhcccchhh---HHHhhHHhhhhccccc
Confidence 99999999999999544322 23334444554 7999999999999996
No 11
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.6e-26 Score=208.24 Aligned_cols=299 Identities=17% Similarity=0.204 Sum_probs=232.3
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHH
Q 018715 38 VIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFG 117 (351)
Q Consensus 38 ~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la 117 (351)
+.+...++|..+.+.....+.|+++||...+..+......-+.-...+.++.|.+..|.++.|++..++.++|+.++.+-
T Consensus 27 l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vll 106 (467)
T KOG4505|consen 27 LASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLL 106 (467)
T ss_pred HHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 56778888899999999999999999988765443321111111233789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhccc----CCc-hhHHHHHHHhhhhhHHHH
Q 018715 118 AVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD----ETP-LLYSLVFGEGVVNDATSV 192 (351)
Q Consensus 118 ~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~----~~~-~l~~~l~gEs~lnD~~ai 192 (351)
.+-++..+.+.+..+|.+.| ++++..+++++++++||||+...++..+. ++| |+++++.+||..||++|+
T Consensus 107 lpVmi~gwlvs~~fvy~l~p-----~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMai 181 (467)
T KOG4505|consen 107 LPVMIIGWLVSFGFVYALIP-----NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAI 181 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcch
Confidence 99898888888888887764 89999999999999999999999999864 367 799999999999999999
Q ss_pred HHHHHHHHhhhhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchh--HHHHHHHHHHHHHH
Q 018715 193 VLFNAIQSFDLSHIN---LSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDRE--VALMILMAYLSYML 267 (351)
Q Consensus 193 vlf~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~--~~l~l~~~~~~~~~ 267 (351)
.++...+.+...... ..+| .....+++...|.++|.+.|++....+|+...+ +..+.| ..+-+.+++++.++
T Consensus 182 pflflai~Ll~h~~~r~~~rdw--v~~~iLyec~fg~llG~vIG~l~r~~lk~aekk-rlid~eSfl~~~vvl~lfc~gi 258 (467)
T KOG4505|consen 182 PFLFLAIDLLRHKPRRKAGRDW--VCDNILYECFFGCLLGCVIGYLSRQGLKFAEKK-RLIDRESFLIFYVVLALFCMGI 258 (467)
T ss_pred hHHHHHHHHHhcCchhccCCce--ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHhhh
Confidence 988766665432211 1223 667789999999999999999999999988643 333444 45567788899999
Q ss_pred HHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--c--cchhhhhcccceeee
Q 018715 268 AELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD--I--EKWRVVRDSLPVQAI 343 (351)
Q Consensus 268 ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~--~--~~~~~~~~~~~~~~i 343 (351)
.+.+|.+.++-.|++|.+.+++++.. +++ +..+..+.++.+++..+|+|.|..++- + ..-+.=.|+..++.|
T Consensus 259 gtiiGvddLl~sFfAGi~Fswd~wFs--k~t--~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi 334 (467)
T KOG4505|consen 259 GTIIGVDDLLVSFFAGIVFSWDEWFS--KKT--KESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSI 334 (467)
T ss_pred hheechhHHHHHHHhhhhcchhHHhh--hhh--hhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHH
Confidence 99999999999999999999876542 222 223456777889999999999998842 1 111222344556666
Q ss_pred eeccc
Q 018715 344 PSCMG 348 (351)
Q Consensus 344 ~~~~~ 348 (351)
..+..
T Consensus 335 ~iif~ 339 (467)
T KOG4505|consen 335 TIIFI 339 (467)
T ss_pred HHHHh
Confidence 55544
No 12
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.9e-24 Score=208.50 Aligned_cols=281 Identities=18% Similarity=0.217 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChH
Q 018715 25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK 104 (351)
Q Consensus 25 ~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~ 104 (351)
.+.....++..+.+.+++.+ |.++|.++++++.|+++||....... ..++ .-+.+.++++..++|.+|+|.|.+
T Consensus 7 ~l~~~~iiL~~a~i~~~l~~-rl~lp~vlg~llaGiilGp~~~~~~~-~~~~----~i~~laelGvi~LlF~~GLE~~~~ 80 (397)
T COG0475 7 ILLQLLILLLVAVILGPLFK-RLGLPPVLGYLLAGIILGPWGLLLII-ESSE----IIELLAELGVVFLLFLIGLEFDLE 80 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHhcCcccccccC-CchH----HHHHHHHHhHHHHHHHHHHCcCHH
Confidence 33344456666777775554 59999999999999999982221111 1111 113478999999999999999999
Q ss_pred HHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCC-c-hhHHHHH
Q 018715 105 QFFRNFMT-IMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET-P-LLYSLVF 181 (351)
Q Consensus 105 ~l~~~~~~-i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~-~-~l~~~l~ 181 (351)
++||++++ ....+..+...+........+..+ ++++..++++|++++.||.+.+.++++|.|. + |.+++..
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l 154 (397)
T COG0475 81 RLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGIL------GLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLIL 154 (397)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHh------ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 99999999 666665665555333322221124 8999999999999999999999999999873 3 7999999
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHH
Q 018715 182 GEGVVNDATSVVLFNAIQSFDLSHINL-SIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILM 260 (351)
Q Consensus 182 gEs~lnD~~aivlf~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~ 260 (351)
+..++||..++++..++..+..++... ..+.................| -++..+..|+... .+.++.....++..
T Consensus 155 ~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g---~~l~~~~~r~~~~-~~~~e~~~~~~l~i 230 (397)
T COG0475 155 GALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLG---RYLLPPLFRRVAK-TESSELFILFVLLL 230 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh-ccchHHHHHHHHHH
Confidence 999999999999999988876543222 112222222222222222222 2566666666642 24556677889999
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcc
Q 018715 261 AYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSF-VAEIFIFLYVGMDALD 327 (351)
Q Consensus 261 ~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~Fv~iG~~i~~ 327 (351)
++...+++|..|.|.++++|.+|+.++...+++ ++.++-.+.+.+ ++-++||+.+|++++.
T Consensus 231 ~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~------~~l~~~i~~~~~~~fiplFFi~vG~~~dl 292 (397)
T COG0475 231 VLGAAYLAELLGLSMILGAFLAGLLLSESEYRK------HELEEKIEPFGDGLFIPLFFISVGMSLDL 292 (397)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHhcccccch------HHHHHHHHhHHhHHHHHHHHHHhhHHcCH
Confidence 999999999999999999999999999654321 345556677777 9999999999999964
No 13
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.93 E-value=5.8e-24 Score=217.24 Aligned_cols=277 Identities=15% Similarity=0.130 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHH
Q 018715 26 MNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQ 105 (351)
Q Consensus 26 l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~ 105 (351)
.+..+.+++.+..+...+.||.++|.+++++++|+++||......+ ..+ +-+.+.++++.+++|..|+|+|+++
T Consensus 6 ~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~--~~~----~i~~laelGvv~LlF~iGLEl~~~~ 79 (621)
T PRK03562 6 TLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT--DVE----SILHFAEFGVVLMLFVIGLELDPQR 79 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC--CHH----HHHHHHHHHHHHHHHHHHhCcCHHH
Confidence 3333443444444444455569999999999999999986432211 110 1134789999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCC--chhHHHHHHH
Q 018715 106 FFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET--PLLYSLVFGE 183 (351)
Q Consensus 106 l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~--~~l~~~l~gE 183 (351)
+|+.+++++.++..++.+++.+.+...+ .+ +++|..++++|.+++.|+++.+.++++|.+. ++.++...+.
T Consensus 80 l~~~~~~~~~~g~~qv~~~~~~~~~~~~-~~------g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ 152 (621)
T PRK03562 80 LWKLRRSIFGGGALQMVACGGLLGLFCM-LL------GLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAI 152 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHH
Confidence 9999999999999999998776655444 44 8999999999999999999999999999883 3689999999
Q ss_pred hhhhhHHHHHHHHHHHHhhhhccc--hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCchhHHHHHHH
Q 018715 184 GVVNDATSVVLFNAIQSFDLSHIN--LSIALKFVGSFFYLFIASTMLGVIAG-LLSAFIIKKLYMGRHSTDREVALMILM 260 (351)
Q Consensus 184 s~lnD~~aivlf~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~G~~~G-~~~~~l~~~~~~~~~~~~~~~~l~l~~ 260 (351)
.++||..+++++.++..+...+.+ ....+... ...++.++..++.| ++..+++++... ++.++.....++.+
T Consensus 153 ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~l~~~~~~-~~~~e~~~~~~l~l 227 (621)
T PRK03562 153 LLFQDIAAIPLVAMIPLLAASGASTTLGAFALSA----LKVAGALALVVLGGRYVTRPALRFVAR-SGLREVFTAVALFL 227 (621)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCccchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHH
Confidence 999999999888876544332111 11111111 12222222233333 344555555532 23445556667788
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 018715 261 AYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD 327 (351)
Q Consensus 261 ~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~ 327 (351)
++++.+++|.+|+|..+|+|++|+++++.+. +++.++..+.+..++.++||+.+|++++.
T Consensus 228 v~~~a~la~~~Gls~~lGAFlAGl~l~~~~~-------~~~le~~i~pf~~lll~lFFi~vG~~id~ 287 (621)
T PRK03562 228 VFGFGLLMEEVGLSMALGAFLAGVLLASSEY-------RHALESDIEPFKGLLLGLFFIAVGMSIDF 287 (621)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHHHHHHHHHHhhhhccH
Confidence 8999999999999999999999999995322 23344455555668889999999999954
No 14
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.92 E-value=7.2e-23 Score=208.78 Aligned_cols=271 Identities=15% Similarity=0.100 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhh
Q 018715 31 ALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF 110 (351)
Q Consensus 31 ~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~ 110 (351)
.+++.+..+...+.||.++|.+++++++|+++||......+ +.+ .-+.+.++++.+++|..|+|+|++++|+.+
T Consensus 11 ~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~--~~~----~i~~laelGvv~LLF~iGLel~~~~l~~~~ 84 (601)
T PRK03659 11 VLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS--DVD----EILHFSELGVVFLMFIIGLELNPSKLWQLR 84 (601)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC--cHH----HHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 33334444444455569999999999999999996432211 110 113478999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCCc--hhHHHHHHHhhhhh
Q 018715 111 MTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP--LLYSLVFGEGVVND 188 (351)
Q Consensus 111 ~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~~--~l~~~l~gEs~lnD 188 (351)
+.++.++..++++++.+.+...++ + +++|..++++|..++.||++.+.++++|.+.. +.+++..+..++||
T Consensus 85 ~~~~~~g~~~v~~t~~~~~~~~~~-~------g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~D 157 (601)
T PRK03659 85 RSIFGVGAAQVLLSAAVLAGLLML-T------DFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQD 157 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H------ccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHH
Confidence 999999999999998776655443 4 88999999999999999999999999998843 58899999999999
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHH
Q 018715 189 ATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAG-LLSAFIIKKLYMGRHSTDREVALMILMAYLSYML 267 (351)
Q Consensus 189 ~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G-~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 267 (351)
..+++++.++..+.....+...+..... . +..++..+..| ++..++.++... .+.++.....++.+++++.++
T Consensus 158 i~~i~ll~l~~~l~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~l~~vl~~a~l 231 (601)
T PRK03659 158 LAVIPALALVPLLAGSADEHFDWMKIGM-K----VLAFAGMLIGGRYLLRPLFRFIAA-SGVREVFTAAALLLVLGSALF 231 (601)
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHH
Confidence 9888887766544332211111211111 1 11111122223 334445555432 233455556667778888889
Q ss_pred HHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 018715 268 AELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD 327 (351)
Q Consensus 268 ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~ 327 (351)
+|.+|+|+.+++|++|+++++.+ .+++.++..+.+..++.++||+.+|++++.
T Consensus 232 ~~~~Gls~~LGAFlaGl~l~~s~-------~~~~l~~~i~pf~~lll~lFFi~vGm~id~ 284 (601)
T PRK03659 232 MDALGLSMALGTFIAGVLLAESE-------YRHELEIAIEPFKGLLLGLFFISVGMALNL 284 (601)
T ss_pred HHHhCccHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 99999999999999999999632 222333344445568889999999999954
No 15
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=99.91 E-value=1.9e-22 Score=211.46 Aligned_cols=285 Identities=12% Similarity=0.096 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCcccccc----ChhHHHHHhhHHHhhHhhhcCChHHHH
Q 018715 32 LLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMF----SEDLFFIYLLPPIIFNAGFQVKKKQFF 107 (351)
Q Consensus 32 lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~----~~~~~~~i~L~~ilF~aGl~l~~~~l~ 107 (351)
+++++.+++.++ ||.++|.+++++++|+++||......+......+.. .-+.+.++++.+++|.+|+|+|.+.+|
T Consensus 51 il~~a~l~~~ll-~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr 129 (832)
T PLN03159 51 VVVTTRLLVFIL-KPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIR 129 (832)
T ss_pred HHHHHHHHHHHH-HhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 344444554444 568999999999999999997653322111111111 124588999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCC--chhHHHHHHHhh
Q 018715 108 RNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET--PLLYSLVFGEGV 185 (351)
Q Consensus 108 ~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~--~~l~~~l~gEs~ 185 (351)
|++++.+..+..++++++.+.....++ +............++++|.++|.|+..++.++++|.|. ++.+++..+.++
T Consensus 130 ~~~k~a~~ia~~~~ilpf~lg~~~~~~-l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaav 208 (832)
T PLN03159 130 RTGKKALAIAIAGMALPFCIGLAFSFI-FHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAAL 208 (832)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHH
Confidence 999999999999999987555444333 32211001123446889999999999999999999984 479999999999
Q ss_pred hhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHH
Q 018715 186 VNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSY 265 (351)
Q Consensus 186 lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~ 265 (351)
+||..+++++.++..+...+...... +...+..++..++..++.-....|+.|+....++.++....+++..++++.
T Consensus 209 v~Dl~~~ilLav~~~l~~~~~~~~~~---l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a 285 (832)
T PLN03159 209 VNDMCAWILLALAIALAENDSTSLAS---LWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISG 285 (832)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHH
Confidence 99999999988776664432211111 111111111111222222233344444432111223344567777788899
Q ss_pred HHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 018715 266 MLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD 327 (351)
Q Consensus 266 ~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~ 327 (351)
+++|.+|.|.++|+|++|+++.+.+ ..+...+++-.....++.+++|+.+|++++.
T Consensus 286 ~lae~~Gl~~ilGAFlaGl~lp~~~------~~~~l~ekle~~~~~lflPlFFv~vGl~idl 341 (832)
T PLN03159 286 FITDAIGTHSVFGAFVFGLVIPNGP------LGVTLIEKLEDFVSGLLLPLFFAISGLKTNV 341 (832)
T ss_pred HHHHHhCccHHHHHHHHhhccCCcc------hHHHHHHHHHHHHHHHHHHHHHHHhhheeeH
Confidence 9999999999999999999998421 1112222333334568999999999999853
No 16
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.91 E-value=4.4e-22 Score=202.11 Aligned_cols=276 Identities=13% Similarity=0.131 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhh
Q 018715 31 ALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF 110 (351)
Q Consensus 31 ~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~ 110 (351)
.++..+.+.++ +.||.++|.+++++++|+++||......+ .. ...+.+.++++.+++|.+|+|+|++++||.+
T Consensus 13 ~~l~~a~~~~~-l~~rl~~P~ivg~IlaGillGp~~lg~~~--~~----~~~~~la~lGli~llF~~Gle~d~~~l~~~~ 85 (558)
T PRK10669 13 GGLVLAFILGM-LANRLRISPLVGYLLAGVLAGPFTPGFVA--DT----KLAPELAELGVILLMFGVGLHFSLKDLMAVK 85 (558)
T ss_pred HHHHHHHHHHH-HHHHcCCCHHHHHHHHHHhhCcccccccc--ch----HHHHHHHHHHHHHHHHHhHhcCCHHHHHHHh
Confidence 34444545544 44558999999999999999985432211 11 1124588999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCC--chhHHHHHHHhhhhh
Q 018715 111 MTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET--PLLYSLVFGEGVVND 188 (351)
Q Consensus 111 ~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~--~~l~~~l~gEs~lnD 188 (351)
+.....+..+++.++. .+...++.+ ++++..++++|++++.|+++++.++++|.+. ++.+++..+.+.+||
T Consensus 86 ~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~D 158 (558)
T PRK10669 86 SIAIPGAIAQIAVATL-LGMALSAVL------GWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVED 158 (558)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHH
Confidence 7776666667666654 444445555 8999999999999999999999999999883 369999999999999
Q ss_pred HHHHHHHHHHHHhhh----hccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHH
Q 018715 189 ATSVVLFNAIQSFDL----SHINLSIA-LKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYL 263 (351)
Q Consensus 189 ~~aivlf~~~~~~~~----~~~~~~~~-~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~ 263 (351)
..+++.+.++..+.. +..+.... ..............+...++..+...++.++... ++.++......+..+++
T Consensus 159 l~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~e~~~l~~l~~~l~ 237 (558)
T PRK10669 159 LVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAA-TGSRELFTLSVLALALG 237 (558)
T ss_pred HHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHH
Confidence 999888876654432 11111111 1111111111122222333334455555555432 22333334444555555
Q ss_pred HH-HHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 018715 264 SY-MLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI 328 (351)
Q Consensus 264 ~~-~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~~ 328 (351)
.. ..+|.+|+|..+|+|++|+++++.+. +++.++....+..++.++||+.+|++++..
T Consensus 238 ~a~~~~~~lGls~~lGAflaGl~l~~~~~-------~~~~~~~~~~~~~~f~plFFv~~G~~~d~~ 296 (558)
T PRK10669 238 IAFGAVELFDVSFALGAFFAGMVLNESEL-------SHRAAHDTLPLRDAFAVLFFVSVGMLFDPM 296 (558)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHhCChh-------HHHHHHHHhhHHHHHHHHHHHHhhhhcCHH
Confidence 44 45699999999999999999985321 111222222345678999999999999654
No 17
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.8e-14 Score=129.96 Aligned_cols=282 Identities=16% Similarity=0.210 Sum_probs=177.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcC
Q 018715 22 SVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQV 101 (351)
Q Consensus 22 ~~~~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l 101 (351)
+..-+...+..+..+.++|.+..| .|+|+.++|++.|++.||.. ++...+ .+.. +.+.++++..+||..|++.
T Consensus 4 ~tpli~tiv~gl~lAFl~G~lA~r-lrlsPLVGyL~AGv~~gpft----pGFvad-~~La-~~LAelGViLLmFgvGLhf 76 (408)
T COG4651 4 DTPLITTIVGGLVLAFLLGALANR-LRLSPLVGYLLAGVLAGPFT----PGFVAD-QTLA-PELAELGVILLMFGVGLHF 76 (408)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHhcCCCC----CCcccc-hhHH-HHHHHhhHHHHHHhcchhe
Confidence 344444555667777777777665 89999999999999999853 332211 1222 2478999999999999999
Q ss_pred ChHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCC--chh
Q 018715 102 KKKQFFRNFMTIMLFGAVGTLISFV---IISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET--PLL 176 (351)
Q Consensus 102 ~~~~l~~~~~~i~~la~~g~~~~~~---~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~--~~l 176 (351)
+.+++...+. ++++|.+.... ..+...-+.+ +|++...+.+|-++|-.|.++..+-++|++. ++-
T Consensus 77 slkdLLavk~----iAipgAl~qia~at~lg~gL~~~l------gws~~~glvfGlaLS~aSTVvllraLqEr~lidt~r 146 (408)
T COG4651 77 SLKDLLAVKA----IAIPGALAQIALATLLGMGLSSLL------GWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQR 146 (408)
T ss_pred eHHHHhhHHH----HhcchHHHHHHHHHHHHhHHHHHc------CCCcccceeeeehhhhHHHHHHHHHHHHhccccccC
Confidence 9999876554 33444443322 2233333444 9999999999999999999999999998872 245
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH---HHhhh-hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCCCc
Q 018715 177 YSLVFGEGVVNDATSVVLFNAI---QSFDL-SHINLSIALKFVGSFFYLFIASTMLGVIAGLLS-AFIIKKLYMGRHSTD 251 (351)
Q Consensus 177 ~~~l~gEs~lnD~~aivlf~~~---~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~-~~l~~~~~~~~~~~~ 251 (351)
+++-.|=-+..|...++..... .+... ++....+....+...+.+...-+.++.++|.-. .|...+...+ -.++
T Consensus 147 G~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-GsrE 225 (408)
T COG4651 147 GRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GSRE 225 (408)
T ss_pred ceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHH
Confidence 6666677777885555433322 22221 111111122223333444455556666666544 4445554321 1122
Q ss_pred hhHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 018715 252 REVALMILMAYL-SYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI 328 (351)
Q Consensus 252 ~~~~l~l~~~~~-~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~~ 328 (351)
.....++.+++. +|+.+|.+|.|.-+++|++|++++..+ .+++..+. .-.+...+..+||+-+||..+|+
T Consensus 226 lf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~ese---lshraa~~----slpLrdaFaVlFFvsVGmlf~P~ 296 (408)
T COG4651 226 LFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAESE---LSHRAAED----SLPLRDAFAVLFFVSVGMLFDPM 296 (408)
T ss_pred HHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcchh---hhHHHHHh----ccCHHHHHHHHHHHHhhhhcCcH
Confidence 223344555544 455667899999999999999999322 22221111 12345588899999999999875
No 18
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.21 E-value=1.7e-10 Score=120.32 Aligned_cols=293 Identities=16% Similarity=0.122 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccCh----hHHHHHhhHHHhhHhhhcCC
Q 018715 27 NLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE----DLFFIYLLPPIIFNAGFQVK 102 (351)
Q Consensus 27 ~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~----~~~~~i~L~~ilF~aGl~l~ 102 (351)
.+.+.++....-+.+++.|+.++|..+..++.|+++||..+.-.+......+..+. +.+..++....+|..|+++|
T Consensus 25 ~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d 104 (769)
T KOG1650|consen 25 LLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEID 104 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444455666677999999999999999999876433222111122111 44678888999999999999
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC----HHHHHHHhhhhccccHHHHHHHhcccCC--chh
Q 018715 103 KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLK----IGDYLAIGAIFAATDSVCTLQVLNQDET--PLL 176 (351)
Q Consensus 103 ~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~----~~~alllgailsaTdp~~v~~il~~~~~--~~l 176 (351)
.+.+||+.++...++..++++++...................+ ...=.......+.|+=.++..++.|.+. +++
T Consensus 105 ~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~ 184 (769)
T KOG1650|consen 105 LRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNSEL 184 (769)
T ss_pred HHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhchh
Confidence 9999999999998888888888644333322221111111111 1133556688899999999999999883 479
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHH
Q 018715 177 YSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVAL 256 (351)
Q Consensus 177 ~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l 256 (351)
+++...++.+||..++.++.....+....... ............+..+..=.++=....|+.|+...+++..+.....
T Consensus 185 Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~ 262 (769)
T KOG1650|consen 185 GRLALSAAVVNDVAGWILLALALAFSSELKLS--PLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICV 262 (769)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhccCCCc--chHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehh
Confidence 99999999999999998888776665433210 0001111111111111111112223333334321111123344566
Q ss_pred HHHHHHHHHHHHHhhc-cchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018715 257 MILMAYLSYMLAELFY-LSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDAL 326 (351)
Q Consensus 257 ~l~~~~~~~~~ae~lg-~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~ 326 (351)
.+...+.+....+.++ .+++.++++.|+.+-+..+- .+...+++-+....++-++.|...|...+
T Consensus 263 ~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~-----g~~L~ekle~~~~~~llPl~~~~~G~k~d 328 (769)
T KOG1650|consen 263 TLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPL-----GSALIEKLEDLVSGLLLPLYFAISGLKTD 328 (769)
T ss_pred hHHHHHHHHHHHHHhccccccchhheEEEecCCCCch-----hHHHHHHHHHHHHHHHHHHHHHhhcccee
Confidence 7777888888888876 88899999999999865431 11222223333445888999999998874
No 19
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.60 E-value=1e-05 Score=78.54 Aligned_cols=208 Identities=17% Similarity=0.135 Sum_probs=125.9
Q ss_pred HHHHHhhHHHhhHhhhcCC-------hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh
Q 018715 84 LFFIYLLPPIIFNAGFQVK-------KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF 156 (351)
Q Consensus 84 ~~~~i~L~~ilF~aGl~l~-------~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgail 156 (351)
++-+....+..|..|+|++ ++..||...+ ..-++.|++.++ ..|+.+ +..-....-=-++-
T Consensus 65 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPa-----liy~~~------n~~~~~~~~GW~Ip 132 (423)
T PRK14853 65 WAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPA-----LIYVAV------NLAGGGALRGWAIP 132 (423)
T ss_pred HHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHH-----HHHHHH------hCCchhhhhhhhhh
Confidence 4556666667788999995 4454555444 344667777765 234444 22212212222677
Q ss_pred ccccHHHHHHHhcccC--Cc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 157 AATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAG 233 (351)
Q Consensus 157 saTdp~~v~~il~~~~--~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G 233 (351)
++||.+.++.++...+ .| +++..+.+-+++||..++++..++. .++.+ +.... ... + .
T Consensus 133 ~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~i~---~~~L~-------~a~---~---~ 193 (423)
T PRK14853 133 TATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSELN---LEALL-------LAL---V---P 193 (423)
T ss_pred hhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCCCC---HHHHH-------HHH---H---H
Confidence 8999999999998765 46 6999999999999999998877765 22222 11110 000 0 1
Q ss_pred HHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCC-C----hhHHHHHHHHHHH
Q 018715 234 LLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNV-T----ESSRVTTKHAFAT 308 (351)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~-~----~~~~~~~~~~~~~ 308 (351)
....+.+++. +.++ ....+......++..+..|.++.+|.++.|+++-..++.+. + ++-.++.++..+.
T Consensus 194 ~~~l~~l~~~----~V~~--~~~Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p 267 (423)
T PRK14853 194 LALFWLLVQK----RVRK--WWLLLPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRP 267 (423)
T ss_pred HHHHHHHHHc----CCch--hhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHH
Confidence 1112223322 2222 22223335577888899999999999999999953221110 0 1112344444544
Q ss_pred -HHHHHHHHH-HHHhhhhhccc
Q 018715 309 -LSFVAEIFI-FLYVGMDALDI 328 (351)
Q Consensus 309 -~~~l~~~~~-Fv~iG~~i~~~ 328 (351)
..++.-++| |.-.|.+++..
T Consensus 268 ~V~~~ILPLFAFANaGV~l~~~ 289 (423)
T PRK14853 268 LSAGVAVPVFAFFSAGVAIGGL 289 (423)
T ss_pred HHHHHHHHHHHHHHhhheecCc
Confidence 457888999 99999999653
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=97.65 E-value=0.0018 Score=62.04 Aligned_cols=201 Identities=13% Similarity=0.159 Sum_probs=119.5
Q ss_pred HHHHHhhHHHhhHhhhcCChHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----CCCCHHHHHHH
Q 018715 84 LFFIYLLPPIIFNAGFQVKKKQFF-------RNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNI----GTLKIGDYLAI 152 (351)
Q Consensus 84 ~~~~i~L~~ilF~aGl~l~~~~l~-------~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~----~~~~~~~alll 152 (351)
+.-+....+..|..|+|++++... |..-+ ..-++.|++.++ ..|..++. +. +||
T Consensus 55 wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP-~~aA~GGm~vPa-----~iy~~~n~-~~~~~~~GW-------- 119 (373)
T TIGR00773 55 WINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFP-VIAAIGGMIAPA-----LIYLAFNA-NDPITREGW-------- 119 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHH-----HHHhheec-CCCcccCcc--------
Confidence 344566666678889998866542 22222 233555666654 23444421 11 122
Q ss_pred hhhhccccHHHHHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 018715 153 GAIFAATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLG 229 (351)
Q Consensus 153 gailsaTdp~~v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G 229 (351)
++=.+||.+-...++.-. |.| .++..+..-++.||..+++.-.++. .++.+ +... . .
T Consensus 120 -~IP~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FY---t~~i~---~~~L-------~------~ 179 (373)
T TIGR00773 120 -AIPAATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFY---TNDLS---MAAL-------L------V 179 (373)
T ss_pred -ccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeec---CCCCC---HHHH-------H------H
Confidence 456789999999987744 466 5899999999999999987766553 22322 1111 1 1
Q ss_pred HHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHH
Q 018715 230 VIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATL 309 (351)
Q Consensus 230 ~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~ 309 (351)
...+....+.++|. +.++ ....+......++..+..|.++.+|.++.|+++-++.+.+ ++-.++.++..+..
T Consensus 180 a~~~~~~l~~~~~~----~v~~--~~~y~~lgvllW~~~~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~ 251 (373)
T TIGR00773 180 AAVAIAVLAVLNRC----GVRR--LGPYMLVGVILWFAVLKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPW 251 (373)
T ss_pred HHHHHHHHHHHHHc----CCch--hhHHHHHHHHHHHHHHHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHH
Confidence 11112233444443 1222 2222223334444447899999999999999998643222 22234566666555
Q ss_pred H-HHHHHHH-HHHhhhhhcc
Q 018715 310 S-FVAEIFI-FLYVGMDALD 327 (351)
Q Consensus 310 ~-~l~~~~~-Fv~iG~~i~~ 327 (351)
. ++.-++| |.-.|.+++.
T Consensus 252 v~~lilPlFAFanAGv~l~~ 271 (373)
T TIGR00773 252 VAYLILPLFAFANAGVSLQG 271 (373)
T ss_pred HHHHHHHHHHHHhcCeeeec
Confidence 5 6777999 9999999954
No 21
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.15 E-value=0.2 Score=47.35 Aligned_cols=150 Identities=12% Similarity=0.100 Sum_probs=70.3
Q ss_pred ccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhcc
Q 018715 79 MFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAA 158 (351)
Q Consensus 79 ~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsa 158 (351)
..++|....+++..+.|..|++++.+++++..+..-... .+...++.+.....+.+.... +......+..|-.+.+
T Consensus 26 ~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l-~~~~~~fvl~Pll~~~~~~l~---~~~~~~~l~~Gl~~~~ 101 (313)
T PF13593_consen 26 VIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHL-FVQAFNFVLFPLLGFGLSRLF---PAFLPPELALGLLILA 101 (313)
T ss_pred ccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHh
Confidence 344456778888899999999999999988765532211 122233333332222221111 1111222444433333
Q ss_pred ccHHH---HHHHhccc-CCchhHHHHHHHhhhhhHHHHHHHHHHHHhhh-hccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 159 TDSVC---TLQVLNQD-ETPLLYSLVFGEGVVNDATSVVLFNAIQSFDL-SHINLSIALKFVGSFFYLFIASTMLGVIAG 233 (351)
Q Consensus 159 Tdp~~---v~~il~~~-~~~~l~~~l~gEs~lnD~~aivlf~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G 233 (351)
.=|.. .+..-+.. |+.. .-..++.++...++++.=....... ++..+.+..+.+.+....++.-.++|-..-
T Consensus 102 ~lPtTv~S~v~~T~~AgGN~a---~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r 178 (313)
T PF13593_consen 102 CLPTTVSSSVVLTRLAGGNVA---LALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLR 178 (313)
T ss_pred hCCchhhHHHHHHHHcCCCHH---HHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 22222322 2321 1223566677788877665555443 222222333444444444444444444433
Q ss_pred HH
Q 018715 234 LL 235 (351)
Q Consensus 234 ~~ 235 (351)
..
T Consensus 179 ~~ 180 (313)
T PF13593_consen 179 RW 180 (313)
T ss_pred HH
Confidence 33
No 22
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.61 E-value=0.65 Score=43.74 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=80.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHH
Q 018715 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFV 126 (351)
Q Consensus 47 ~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~ 126 (351)
..+++....+++|+++|......+ .....-.++..+.+.++++ -.-|.+++.+++.+.+.+.+......+..+..
T Consensus 24 ~~l~~~~~AillG~~i~n~~~~~~-~~~~~Gi~~~~k~~Lr~gI----VLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 24 PGLGALLIAILLGMLIGNLFFGLP-ARFKPGIKFSSKKLLRLGI----VLLGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred cCccHHHHHHHHHHHHhhhccCCc-HHHHhHHHHHHHHHHHHHH----HHHCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 567777777888888874111111 1111112333345666655 44588999999999999877777777666654
Q ss_pred HHHHHHHHHHhhcccCCCCHHHHHHHh---hhhccccHHHHHHHhcccCCchhHHHHHHHhhhhhHHHHHHHHHHH
Q 018715 127 IISAGAVHFFKQMNIGTLKIGDYLAIG---AIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQ 199 (351)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~alllg---ailsaTdp~~v~~il~~~~~~~l~~~l~gEs~lnD~~aivlf~~~~ 199 (351)
...+...-.+ +++...+.++| +|..++..+++.++.|..+. +....+-.-.++| .+++.+|-.+.
T Consensus 99 ~~~~lg~r~~------~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~-~~a~ava~V~lfg-~vam~~~P~l~ 166 (305)
T PF03601_consen 99 LTYWLGRRLF------GLDRKLAILIAAGTSICGASAIAATAPVIKAKEE-DVAYAVATVFLFG-TVAMFLYPLLG 166 (305)
T ss_pred HHHHHHHHHh------CCCHHHHHHHHhhcccchHHHHHHHcccccCCCC-ceeeeehHHHHHH-HHHHHHHHHHH
Confidence 4443431233 78888888888 55566666666666664332 2222233333444 35555554443
No 23
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=96.41 E-value=0.095 Score=50.39 Aligned_cols=208 Identities=18% Similarity=0.202 Sum_probs=105.5
Q ss_pred hHHHHHhhHHHhhHhhhcCChHHHH----HhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-hh
Q 018715 83 DLFFIYLLPPIIFNAGFQVKKKQFF----RNFMT--IMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AI 155 (351)
Q Consensus 83 ~~~~~i~L~~ilF~aGl~l~~~~l~----~~~~~--i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllg-ai 155 (351)
+++-+....+..|..|+|++++... +.++. -..-++.|++.++ ..|..++ .+-.. -.=| ++
T Consensus 57 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPa-----lIyl~~n------~~~~~-~~~GW~I 124 (378)
T PF06965_consen 57 HWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPA-----LIYLAFN------AGGPE-AAHGWAI 124 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTH-----HHHGGG--------SSTT-HHHHTSS
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHH-----HHHheee------cCCCC-cCceEEe
Confidence 3455677777788899998866442 11111 2233555666553 2344442 21111 1122 67
Q ss_pred hccccHHHHHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 156 FAATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIA 232 (351)
Q Consensus 156 lsaTdp~~v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~ 232 (351)
=++||.+-...++.-. +.| .++..+..-++.||..+++.-.++.+ ++.+ +. +.......
T Consensus 125 P~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~i~---~~-------~L~~a~~~----- 186 (378)
T PF06965_consen 125 PMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DGIS---LL-------WLLLAAAA----- 186 (378)
T ss_dssp SS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-----------HH-------HHHHHHHH-----
T ss_pred cccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CCCC---HH-------HHHHHHHH-----
Confidence 7999999999998744 466 58999999999999999987776642 2222 11 11111111
Q ss_pred HHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCC--ChhHHHHHHHHHHHHH
Q 018715 233 GLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNV--TESSRVTTKHAFATLS 310 (351)
Q Consensus 233 G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~--~~~~~~~~~~~~~~~~ 310 (351)
....+.++|.+ .+.. ..........++.-..-|.++-+|.+..|+.+-.+++.+. .++.-++.++..+...
T Consensus 187 -~~~l~~l~r~~----v~~~--~~Y~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v 259 (378)
T PF06965_consen 187 -LLLLFVLNRLG----VRSL--WPYLLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWV 259 (378)
T ss_dssp -HHHHHHHHHTT-------T--HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHCC----Ccee--hHHHHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhh
Confidence 22223344432 1111 2223334455665566788999999999999987665421 1122345555665554
Q ss_pred HHHHHHHHHH--hhhhhcc
Q 018715 311 FVAEIFIFLY--VGMDALD 327 (351)
Q Consensus 311 ~l~~~~~Fv~--iG~~i~~ 327 (351)
...-.-+|.+ .|..+..
T Consensus 260 ~~~IlPlFAlaNAGV~l~~ 278 (378)
T PF06965_consen 260 AFVILPLFALANAGVSLSG 278 (378)
T ss_dssp HHTHHHHHHHHHS----SS
T ss_pred hhhhHHhHhheeCceEEec
Confidence 4444444444 4555544
No 24
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=96.33 E-value=0.11 Score=50.14 Aligned_cols=202 Identities=15% Similarity=0.189 Sum_probs=114.7
Q ss_pred hHHHHHhhHHHhhHhhhcCChHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----CCCCHHHHHH
Q 018715 83 DLFFIYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNI----GTLKIGDYLA 151 (351)
Q Consensus 83 ~~~~~i~L~~ilF~aGl~l~~~~l-------~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~----~~~~~~~all 151 (351)
++.-+....+..|..|+|++++.. ||..-++ .-++.|++.++ ..|+.++. +. .||
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi-~AAlGGmivPA-----lIy~~~n~-g~~~~~~GW------- 126 (389)
T PRK09560 61 HWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPA-IAAVGGMVVPA-----LIYAAFNY-NNPETLRGW------- 126 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHhchHHHH-----HHHheeec-CCCcccCcc-------
Confidence 345566666777889999886544 3322222 33556666664 23444421 11 122
Q ss_pred HhhhhccccHHHHHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHH
Q 018715 152 IGAIFAATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTML 228 (351)
Q Consensus 152 lgailsaTdp~~v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (351)
++=.+||.+-...++.-. +.| .++.-+..-++.||..+++.-.++. .++.+ +... ....
T Consensus 127 --gIPmATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY---t~~i~---~~~L-------~~a~--- 188 (389)
T PRK09560 127 --AIPAATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY---TSDLS---LPAL-------ALAA--- 188 (389)
T ss_pred --ccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---CCCCC---HHHH-------HHHH---
Confidence 455789999999998754 466 5899999999999999987766553 22222 1111 1111
Q ss_pred HHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHH
Q 018715 229 GVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFAT 308 (351)
Q Consensus 229 G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~ 308 (351)
.+....+.++|.. . .....-+......++.-..-|.++-+|.++.|+.+-.+.+.+..++--++.+|..+.
T Consensus 189 ---~~~~~l~~ln~~~----v--~~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p 259 (389)
T PRK09560 189 ---IAIAVLFLLNRLG----V--TKLTPYLIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHP 259 (389)
T ss_pred ---HHHHHHHHHHHcC----C--ccchHHHHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhh
Confidence 1122233344432 1 112223334556666666779999999999999997633222111112455566665
Q ss_pred HHHHHHHHHHHHh--hhhh
Q 018715 309 LSFVAEIFIFLYV--GMDA 325 (351)
Q Consensus 309 ~~~l~~~~~Fv~i--G~~i 325 (351)
.....-.-+|.+. |..+
T Consensus 260 ~v~~~IlPlFAlaNAGV~l 278 (389)
T PRK09560 260 WVAFAILPLFAFANAGVSL 278 (389)
T ss_pred hhhhhhHHHHHhhcCCeee
Confidence 5555555555554 4444
No 25
>COG2855 Predicted membrane protein [Function unknown]
Probab=96.02 E-value=0.13 Score=48.47 Aligned_cols=140 Identities=14% Similarity=0.115 Sum_probs=86.4
Q ss_pred cccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHH
Q 018715 46 NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISF 125 (351)
Q Consensus 46 ~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~ 125 (351)
+.++|..+..++.|+++|.... .+.....-.++..+.+.++++.. -|++++++++.+.+.+.+......+..+
T Consensus 34 ~~~l~al~lAIllGi~l~~l~~--~~~~~~~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~~~l~~t- 106 (334)
T COG2855 34 HLGLSALTLAILLGILLGILPQ--IPAQTSAGITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIAITLSST- 106 (334)
T ss_pred hcCchHHHHHHHHHHHHhcccc--chhhhccchhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHHHHHHHH-
Confidence 4568888889999999983211 11111222566667777877643 4899999999999888776555444444
Q ss_pred HHHHHHHHHHHhhcccCCCCHHHHHHHh---hhhccccHHHHHHHhcccCCchhHHHHHHHhhhhhHHHHHHHHHHHH
Q 018715 126 VIISAGAVHFFKQMNIGTLKIGDYLAIG---AIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQS 200 (351)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~alllg---ailsaTdp~~v~~il~~~~~~~l~~~l~gEs~lnD~~aivlf~~~~~ 200 (351)
+..+..+.-++ ++++..+++.| +|..+...+++.|+.|... ++...-+..-.+++. ++..+|-.+..
T Consensus 107 ~~~~~~lg~~l------gld~~~a~Lia~GssICGasAiaA~~pvika~~-~eva~aIa~V~lfgt-ia~llyP~l~~ 176 (334)
T COG2855 107 FLFAYFLGKLL------GLDKKLALLIAAGSSICGASAIAATAPVIKAEE-EEVAVAIAVVVLFGT-LAMLLYPLLYP 176 (334)
T ss_pred HHHHHHHHHHh------CCCHHHHHHHHccchhhHHHHHHHhCCcCCCCc-cccceehhhHHHHHH-HHHHHHHHHHH
Confidence 33333333344 89999999998 5666666666666666322 234444444555554 45555544433
No 26
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=95.94 E-value=1.7 Score=41.90 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=43.4
Q ss_pred HHHHHHHhh------cccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhH-hhhcCChHHHHHh
Q 018715 37 IVIGHLLEE------NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFN-AGFQVKKKQFFRN 109 (351)
Q Consensus 37 ~~~~~~l~~------~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~-aGl~l~~~~l~~~ 109 (351)
.++|+.++| |..+|+++.-=++..++++....... . ..++|.+ +-+. +..+.|. .|+..|.+.+||-
T Consensus 18 lllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~-~---~~~fd~~-l~~~-fmliFFttiglsa~~~~lkkg 91 (404)
T COG0786 18 LLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGG-V---SLNFDTS-LQDV-FMLIFFATIGLSASFKLLKKG 91 (404)
T ss_pred HHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcce-E---EEeCCcc-cccH-HHHHHHHHhccccchhHHHhc
Confidence 356666664 45699887655555566655442211 1 1222220 1111 2233344 5999999999999
Q ss_pred hHHHHHHHHHH
Q 018715 110 FMTIMLFGAVG 120 (351)
Q Consensus 110 ~~~i~~la~~g 120 (351)
+|+....-...
T Consensus 92 Gk~l~if~~~a 102 (404)
T COG0786 92 GKKLAIFLATA 102 (404)
T ss_pred ChhHHHHHHHH
Confidence 99866554333
No 27
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=95.94 E-value=1.8 Score=42.02 Aligned_cols=78 Identities=13% Similarity=0.178 Sum_probs=39.6
Q ss_pred HHHHHHHHhh------cccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHh
Q 018715 36 CIVIGHLLEE------NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRN 109 (351)
Q Consensus 36 ~~~~~~~l~~------~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~ 109 (351)
..++|+++++ |..+|+++.-=+++.++.+..... .....++|.+ +.+....+..=..|++.+.+.+||-
T Consensus 15 lLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~----~~~~~~f~~~-l~~~lm~~fF~~igL~~~~~~lkkg 89 (368)
T PF03616_consen 15 LLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGF----GGISISFDTS-LQDFLMIIFFTTIGLGASLKLLKKG 89 (368)
T ss_pred HHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhc----CceEEEechh-HHHHHHHHHHHHHhhccchhhHHhh
Confidence 3355666653 466887653323333343332221 1112344432 2333222222235888899999998
Q ss_pred hHHHHHHHH
Q 018715 110 FMTIMLFGA 118 (351)
Q Consensus 110 ~~~i~~la~ 118 (351)
++++.....
T Consensus 90 g~~~~~~~~ 98 (368)
T PF03616_consen 90 GKAVLIFLL 98 (368)
T ss_pred HHHHHHHHH
Confidence 887665443
No 28
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.73 E-value=0.48 Score=49.00 Aligned_cols=103 Identities=10% Similarity=0.149 Sum_probs=65.8
Q ss_pred HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHH
Q 018715 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT 164 (351)
Q Consensus 85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v 164 (351)
+..+++|+.....|.++|.+.+.+++..++.+.....+.-...+...+. .. ++++..++.+|..+++......
T Consensus 266 f~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~-~~------g~~~~~al~~g~~L~~~Gef~~ 338 (601)
T PRK03659 266 FKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLAR-LY------GLRSSERMQFAGVLSQGGEFAF 338 (601)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHhccccHHH
Confidence 6788888888888999999999988877665554444444444333333 33 8999999999999888876553
Q ss_pred H--HHhcccC-Cc-hhHHHHHHHhhhhhHHHHHH
Q 018715 165 L--QVLNQDE-TP-LLYSLVFGEGVVNDATSVVL 194 (351)
Q Consensus 165 ~--~il~~~~-~~-~l~~~l~gEs~lnD~~aivl 194 (351)
+ ..-.+.+ .+ +..+.+.....+.-.++-++
T Consensus 339 vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l 372 (601)
T PRK03659 339 VLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLL 372 (601)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2223344 23 45555544444444333333
No 29
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=95.73 E-value=2 Score=41.03 Aligned_cols=115 Identities=11% Similarity=0.136 Sum_probs=66.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHH
Q 018715 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFV 126 (351)
Q Consensus 47 ~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~ 126 (351)
..++..+..++.|+++|.......+.....-.++..+.+.++++. .-|.+++++++.+.+.+.+......+..+..
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~ 104 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTLILTSTFF 104 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 346666555666666654210000111011122333456666653 4588999999999998887766655555443
Q ss_pred HHHHHHHHHHhhcccCCCCHHHHHHHh---hhhccccHHHHHHHhccc
Q 018715 127 IISAGAVHFFKQMNIGTLKIGDYLAIG---AIFAATDSVCTLQVLNQD 171 (351)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~alllg---ailsaTdp~~v~~il~~~ 171 (351)
...+...-.+ +.+...+.++| +|..++..+++.++.|..
T Consensus 105 ~~~~~g~k~l------~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~ 146 (335)
T TIGR00698 105 LTVFLGSSRL------KLDKQMSILLGAGSSICGAAAVAAIEPVIKAE 146 (335)
T ss_pred HHHHHHHHHh------CCChhHHHHHHcchhHHHHHHHHHhccccCCC
Confidence 3333332223 77888888887 666777777777777643
No 30
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.72 E-value=0.18 Score=43.30 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=75.8
Q ss_pred HHHHHHHHHHh-hcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCC---hHHHHHh
Q 018715 34 CACIVIGHLLE-ENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK---KKQFFRN 109 (351)
Q Consensus 34 ~~~~~~~~~l~-~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~---~~~l~~~ 109 (351)
.++..+|++-- +..++-...+.+++|+++|......+.. ...-.++.+.++++...++..|++.- .+.+||+
T Consensus 7 ~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~~~~~~~~----~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~ 82 (169)
T PF06826_consen 7 ALGYLLGRIKIPGGFSLGAAGGVLFVGLILGALGRTGPIF----LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRG 82 (169)
T ss_pred HHHHHhcceeeccceeccccHHHHHHHHHHHHhhhccCCC----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555444 4456667779999999999764322211 11112356889999999999999877 4566777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh-ccccHHHHHH
Q 018715 110 FMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQ 166 (351)
Q Consensus 110 ~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgail-saTdp~~v~~ 166 (351)
..+...++...+..+........++++ +++.. ...|.+. +-|+|.+...
T Consensus 83 G~~~~~~~~~i~~~~~~~~~~~~~~~~------~l~~~--~~~G~~aGa~T~tp~L~~ 132 (169)
T PF06826_consen 83 GLKLLLLGVIITLVPLLIALVIGRYLF------KLNPG--IAAGILAGALTSTPALAA 132 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHH--HHHHHHHccccCcHHHHH
Confidence 777778787777777666555555555 56644 4555555 3345444333
No 31
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.71 E-value=0.52 Score=40.98 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=60.7
Q ss_pred HhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHH
Q 018715 88 YLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQV 167 (351)
Q Consensus 88 i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~i 167 (351)
+.+...+|..|.++|.+++++..|+.-.+ ..+.+..+...-..++.+... -++.......|.++.+..|....+-
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l-~~~l~~~~~i~Plla~~l~~~----~~~~~~~~~~Gl~l~~~~P~~~~s~ 76 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLL-LIGLLAQFLIMPLLAFGLAWL----LLPLSPALALGLLLVAACPGGPASN 76 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHH-HHHHHHHHHHHHHHHHHHH-H----HTT--HHHHHHHHHHHHS-B-THHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHhcCCcHHHHH
Confidence 35677899999999999998776552221 123333333333333222101 1233334555555544444433332
Q ss_pred hc---ccCCchhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 168 LN---QDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIK 241 (351)
Q Consensus 168 l~---~~~~~~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~ 241 (351)
.- ..|+..+. .+-..+|...+.+..-....+..+.....+ .........+....+++=.+.|....+..+
T Consensus 77 ~~t~l~~Gd~~ls---~~lt~istll~~~~~P~~~~l~~~~~~~~~-~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p 149 (187)
T PF01758_consen 77 VFTYLAGGDVALS---VSLTLISTLLAPFLMPLLLYLLSGGSVDVD-SISPWDIIKSLLLIVILPLLLGMLLRKYLP 149 (187)
T ss_dssp HHHHHTT--HHHH---HHHHHHHHHHHHHHHHHHHHHHH-GGGHHH----HHHHHHHHHHHTHHHHHHHHHHHHHHG
T ss_pred HHHHHhCCCcccc---cceeeHHHHHHHHHHHHHHHHHhccccCCc-hhhHHHHHHHHHheehHHHhHHHHHHHHhh
Confidence 22 12222222 233455555555554444444333322222 111223333444444444455555555444
No 32
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=95.71 E-value=1.8 Score=40.77 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=85.2
Q ss_pred HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHH
Q 018715 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT 164 (351)
Q Consensus 85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v 164 (351)
....++..++|.-|++++.+++++..+.-.. -..+...++.+.-...+.+.. -++...-+..|-++..+-|..+
T Consensus 39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~-vligl~~qfvlmPlla~~~~~-----~~~l~~~l~~Gl~ll~~~Pggv 112 (319)
T COG0385 39 AIPIALALIMFGMGLTLSREDFLAGLKHPRL-VLIGLAAQFVLMPLLALLLAK-----LFPLPPELAVGLLLLGCCPGGV 112 (319)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHhhcchHH-HHHHHHHHHHHHHHHHHHHHH-----HcCCCHHHHHhHHheeeCCCch
Confidence 4588899999999999999999877655332 223444444444333333221 2235555777777777777666
Q ss_pred HHHhcccCCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 165 LQVLNQDETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKL 243 (351)
Q Consensus 165 ~~il~~~~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~ 243 (351)
.+..-..-.+ +.. .-..++..+..++....=....+..++..+.+.++.+.+.+.+.+.=..+|.++=.....+.++.
T Consensus 113 ~S~~~t~lAkGnVa-lsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~ 191 (319)
T COG0385 113 ASNAMTYLAKGNVA-LSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVERL 191 (319)
T ss_pred hHHHHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6643221111 111 11123344555665554444444333322334556677777777777777776666665555544
No 33
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.49 E-value=0.64 Score=48.28 Aligned_cols=96 Identities=9% Similarity=0.008 Sum_probs=61.5
Q ss_pred HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHH
Q 018715 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT 164 (351)
Q Consensus 85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v 164 (351)
|..+++|+.....|.++|++.+.++++.++.+....++.-.+.+...+. .+ ++++..++.+|..+++-.....
T Consensus 269 f~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~-~~------g~~~~~a~~~gl~L~~~Gef~~ 341 (621)
T PRK03562 269 FKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLAR-PL------GVPRKQRRWFAVLLGQGGEFAF 341 (621)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHhHHHHHHHHHhccccHHH
Confidence 6678888777788999999999888777665554444444444433333 33 8999999999998887655432
Q ss_pred --HHHhcccC-Cc-hhHHHHHHHhhhh
Q 018715 165 --LQVLNQDE-TP-LLYSLVFGEGVVN 187 (351)
Q Consensus 165 --~~il~~~~-~~-~l~~~l~gEs~ln 187 (351)
..+-.+.+ .+ +..+.+.....++
T Consensus 342 vl~~~a~~~~~i~~~~~~~lv~~v~lS 368 (621)
T PRK03562 342 VVFGAAQMANVLEPEWAKLLTLAVALS 368 (621)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 23333444 23 4555544444333
No 34
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.21 E-value=1.1 Score=45.77 Aligned_cols=107 Identities=12% Similarity=0.048 Sum_probs=65.1
Q ss_pred HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHH
Q 018715 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT 164 (351)
Q Consensus 85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v 164 (351)
+..+++|+.....|+++|.+.+.+++..+..+.....+.-.......+. .+ +.++.+++..|..+++......
T Consensus 277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~-~~------g~~~~~a~~~gl~l~~~Gef~l 349 (558)
T PRK10669 277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVR-LF------GHSRRTALTIAASLAQIGEFAF 349 (558)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCChhhHHHHHHHHhcccchHH
Confidence 4577777777778999999998877655444333333333322222222 33 7899999999999987666443
Q ss_pred H--HHhcccC-Cc-hhHHHHHHHhhhhhHHHHHHHHHH
Q 018715 165 L--QVLNQDE-TP-LLYSLVFGEGVVNDATSVVLFNAI 198 (351)
Q Consensus 165 ~--~il~~~~-~~-~l~~~l~gEs~lnD~~aivlf~~~ 198 (351)
+ .+-.+.+ .+ +.+..+...+++.-.++-.++...
T Consensus 350 ii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~ 387 (558)
T PRK10669 350 ILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL 387 (558)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 2233444 33 466666666666655555555443
No 35
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=95.09 E-value=0.79 Score=44.15 Aligned_cols=203 Identities=12% Similarity=0.148 Sum_probs=110.8
Q ss_pred hHHHHHhhHHHhhHhhhcCChHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-h
Q 018715 83 DLFFIYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-A 154 (351)
Q Consensus 83 ~~~~~i~L~~ilF~aGl~l~~~~l-------~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllg-a 154 (351)
++.-+....+..|..|+|++++.. ||..-+ ..-++.|++.++ ..|..++ .+ ....=| +
T Consensus 58 ~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP-~~AAlGGmivPA-----lIy~~~n------~~--~~~~~GW~ 123 (383)
T PRK14854 58 HWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITP-AIAAFAGLAMPS-----LIYLSIN------HD--IKVINGWA 123 (383)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHH-----HHHHhhc------cC--CcccCccc
Confidence 344555666667888998876543 222222 233556666664 2344442 11 111111 5
Q ss_pred hhccccHHHHHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 155 IFAATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVI 231 (351)
Q Consensus 155 ilsaTdp~~v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~ 231 (351)
+=.+||.+-...++.-. +.| .++..+..-++.||..+++.-.++. .++.+ +. +.......++
T Consensus 124 IP~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY---t~~i~---~~-------~L~~A~~~~~-- 188 (383)
T PRK14854 124 IPSATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY---TKSLS---LL-------SLSLGTLFIL-- 188 (383)
T ss_pred cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---CCCcc---HH-------HHHHHHHHHH--
Confidence 66899999999987744 466 5899999999999999987766553 22222 11 0111111111
Q ss_pred HHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHH
Q 018715 232 AGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSF 311 (351)
Q Consensus 232 ~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (351)
.-+.++|. ++.+. ...-+......++.-..-|.++-+|.++.|+.+-.+..+..+ --++.++..+....
T Consensus 189 ----~l~~~nr~---~~v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~--pl~rleh~L~p~v~ 257 (383)
T PRK14854 189 ----AMIICNRI---FKINR--SSVYVVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDS--PANFMEDSLHPWII 257 (383)
T ss_pred ----HHHHHHHh---cCCce--ehHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCC--HHHHHHHHhhchHH
Confidence 11223332 11111 222233555666666678999999999999999764322211 12344444444444
Q ss_pred HHHHHHHHHh--hhhh
Q 018715 312 VAEIFIFLYV--GMDA 325 (351)
Q Consensus 312 l~~~~~Fv~i--G~~i 325 (351)
..-.-+|.+. |..+
T Consensus 258 ~~IlPlFA~aNAGV~l 273 (383)
T PRK14854 258 YFILPVFAFANAGISF 273 (383)
T ss_pred HhhHHHHHhhcCCeee
Confidence 4444455554 4444
No 36
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=95.06 E-value=0.67 Score=45.52 Aligned_cols=166 Identities=13% Similarity=0.178 Sum_probs=97.1
Q ss_pred HHHHHhhHHHhhHhhhcCChHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-hh
Q 018715 84 LFFIYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AI 155 (351)
Q Consensus 84 ~~~~i~L~~ilF~aGl~l~~~~l-------~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllg-ai 155 (351)
++-+....+..|..|+|++.+.. ||..-++ .-++.|++.++ ..|+.++. +.+ - .=| ++
T Consensus 71 wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi-~AAlGGmivPA-----lIY~~~n~-~~~---~----~~GWgI 136 (438)
T PRK14856 71 WIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPV-IAALGGMIAPG-----LIYFFLNA-DTP---S----QHGFGI 136 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHH-HHHHhccHHHH-----HHHhheec-CCC---c----cCcccc
Confidence 34566666677888999886544 2222222 33556666654 33554422 110 0 111 56
Q ss_pred hccccHHHHHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 156 FAATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIA 232 (351)
Q Consensus 156 lsaTdp~~v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~ 232 (351)
-.+||.+-...++.-. +.| .++..+..-++.||..+++.-.++.+ ++.+ +... ... +.
T Consensus 137 PmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~---~~~L-------~~a------~~ 197 (438)
T PRK14856 137 PMATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TNLK---FAWL-------LGA------LG 197 (438)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCCc---HHHH-------HHH------HH
Confidence 6899999999988644 467 69999999999999999877665532 2222 1111 111 11
Q ss_pred HHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhc
Q 018715 233 GLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSH 288 (351)
Q Consensus 233 G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~ 288 (351)
+....+.+++.. .+ ....-+......++.-..-|.++-+|.++.|+.+-.
T Consensus 198 ~~~~l~~ln~~~----v~--~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~ 247 (438)
T PRK14856 198 VVLVLAVLNRLN----VR--SLIPYLLLGVLLWFCVHQSGIHATIAAVVLAFMIPV 247 (438)
T ss_pred HHHHHHHHHHcC----Cc--cccHHHHHHHHHHHHHHHccCcHHHHHHHHHheeec
Confidence 122233344432 11 122223345566666667799999999999999854
No 37
>COG2431 Predicted membrane protein [Function unknown]
Probab=94.73 E-value=0.74 Score=42.15 Aligned_cols=89 Identities=24% Similarity=0.255 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCC---hH--HHHHhhHHHHHHHHHHHHHHH
Q 018715 51 ESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK---KK--QFFRNFMTIMLFGAVGTLISF 125 (351)
Q Consensus 51 ~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~---~~--~l~~~~~~i~~la~~g~~~~~ 125 (351)
+.+...+.|..+|...... .+ +++.-.++.+..++|..|.++. .. +.+-| |+.+.++ +-++++.
T Consensus 108 k~~~~vl~g~~~G~l~~~~--------~~-~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~-~i~ilss 176 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSF--------LN-FPENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILA-FITLLSS 176 (297)
T ss_pred HHHHHHHHHHHHHHHhccc--------cc-CchhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHH-HHHHHHH
Confidence 4566778888888654321 11 2445678889999999999887 22 22223 2333434 3445566
Q ss_pred HHHHHHHHHHHhhcccCCCCHHHHHHHhhhh
Q 018715 126 VIISAGAVHFFKQMNIGTLKIGDYLAIGAIF 156 (351)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~alllgail 156 (351)
...|.++.+++ ++|+.+++.+++=.
T Consensus 177 liGG~iaa~~l------~lpl~~~lAmasG~ 201 (297)
T COG2431 177 LIGGLIAAFLL------DLPLTTGLAMASGF 201 (297)
T ss_pred HHHHHHHHHHH------hccHHHHHHHHhcc
Confidence 77777777777 88999888776543
No 38
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.59 E-value=0.71 Score=49.64 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=44.6
Q ss_pred HHHHhhHHHhhHhhhcCChHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHH
Q 018715 85 FFIYLLPPIIFNAGFQVKKKQFFRNF--MTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSV 162 (351)
Q Consensus 85 ~~~i~L~~ilF~aGl~l~~~~l~~~~--~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~ 162 (351)
...+++|+.....|+++|.+.+.... .....+.+.+.+.-.......+ .+. ++++.+++.+|.++++-.-.
T Consensus 323 ~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a-~~~------g~~~~eal~lG~lm~~kG~~ 395 (832)
T PLN03159 323 VSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIA-FFY------TMPFREGITLGFLMNTKGLV 395 (832)
T ss_pred HHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH-HHh------CCCHHHHHHHHHHHhcccHH
Confidence 34678888888899999998885432 2222222222222222222222 233 89999999999999887644
Q ss_pred H
Q 018715 163 C 163 (351)
Q Consensus 163 ~ 163 (351)
.
T Consensus 396 ~ 396 (832)
T PLN03159 396 E 396 (832)
T ss_pred H
Confidence 4
No 39
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=94.43 E-value=0.85 Score=44.58 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=97.4
Q ss_pred HHHHHhhHHHhhHhhhcCChHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-hh
Q 018715 84 LFFIYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AI 155 (351)
Q Consensus 84 ~~~~i~L~~ilF~aGl~l~~~~l-------~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllg-ai 155 (351)
++-+....+..|..|+|++.+.+ ||..-++ .-++.|++.++ ..|+.++. +-+ . .=| ++
T Consensus 66 wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPi-iAAlGGmivPA-----lIy~~~n~-~~~-----~--~~GWgI 131 (423)
T PRK14855 66 WVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAV-VAALGGMLVPA-----ALYTALNA-GGP-----G--ASGWGV 131 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHH-HHHHhchHHHH-----HHHheeec-CCC-----c--cCcccc
Confidence 34456666667888999886644 2222222 33556666654 33444421 111 0 112 56
Q ss_pred hccccHHHHHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 156 FAATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIA 232 (351)
Q Consensus 156 lsaTdp~~v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~ 232 (351)
=.+||.+-...++.-. +.| .++..+..-++.||..+++.-.++. .++.+ +... .....
T Consensus 132 PmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~~i~---~~~L-------~~a~~------ 192 (423)
T PRK14855 132 PMATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY---TSGLN---LLAL-------LLAAL------ 192 (423)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec---CCCCC---HHHH-------HHHHH------
Confidence 6899999999998754 467 5999999999999999987666543 22222 1111 11111
Q ss_pred HHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhc
Q 018715 233 GLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSH 288 (351)
Q Consensus 233 G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~ 288 (351)
+....+.+++.. . .....-+......++.-..-|.++-+|.++.|+.+-.
T Consensus 193 ~~~~l~~ln~~~----v--~~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~ 242 (423)
T PRK14855 193 TWALALLAGRLG----V--TSLKIYAVLGALLWFFVLKSGLHPTVAGVLLALAVPI 242 (423)
T ss_pred HHHHHHHHHHcC----C--ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHhccc
Confidence 122233344431 1 1122223355566666667899999999999999955
No 40
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=94.32 E-value=0.25 Score=43.22 Aligned_cols=129 Identities=18% Similarity=0.196 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCC-----hHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018715 54 TALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK-----KKQFFRNFMTIMLFGAVGTLISFVII 128 (351)
Q Consensus 54 ~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~-----~~~l~~~~~~i~~la~~g~~~~~~~~ 128 (351)
..+..|+++|.... . . .+.. +...++.+..++|..|.++- +|++|+..++.+.+.+...+- ....
T Consensus 3 ~~li~Gi~lG~~~~--~-~-----~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG-Sllg 72 (191)
T PF03956_consen 3 IALILGILLGYFLR--P-P-----FSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG-SLLG 72 (191)
T ss_pred eeHHHHHHHHHHhc--c-c-----cccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH-HHHH
Confidence 45678889986432 1 1 1111 34778889999999999874 445666667888777655544 4566
Q ss_pred HHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCCchhHHHHHHHhhhhhHHHHHHHHHHHH
Q 018715 129 SAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQS 200 (351)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~~~l~~~l~gEs~lnD~~aivlf~~~~~ 200 (351)
+..+..++ ++|+.+++..|+=..==+-.. ..+.|.+.|+.+++-.-.-++-+.++++..-.+..
T Consensus 73 g~l~~~ll------~~~~~~~lav~sG~GwYSlsg--~~i~~~~~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 73 GLLASLLL------GLSLKESLAVASGFGWYSLSG--VLITQLYGPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred HHHHHHHh------cCCHHHHHHHHccCcHHHhHH--HHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777776 889999988876543222211 22344455566666555555666666666665555
No 41
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=94.15 E-value=0.93 Score=44.42 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=61.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHH-HhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHH
Q 018715 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFI-YLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISF 125 (351)
Q Consensus 47 ~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~-i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~ 125 (351)
.+++...+..++|+++.-. ....+...-+-+.+.+ +++|+.....|.++|.+.+.+++..+..+....+..-.
T Consensus 241 ~gls~ilGAFlaGl~ls~~------~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~ 314 (397)
T COG0475 241 LGLSMILGAFLAGLLLSES------EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKI 314 (397)
T ss_pred hChhHHHHHHHHHHHhccc------ccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHH
Confidence 6777888888888877521 1110111112234778 88888888899999999999999885555544444443
Q ss_pred HHHHHHHHHHHhhcccCCCCHHHHHHHhhhhcc
Q 018715 126 VIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAA 158 (351)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~alllgailsa 158 (351)
......++ .. +++...+...|....+
T Consensus 315 ~~~~~~~~-~~------g~~~~~~~~~g~~~~~ 340 (397)
T COG0475 315 LGAYLAAR-LL------GFSKRLALGIGLLLRQ 340 (397)
T ss_pred HHHHHHHH-HH------cCcHHHHHHHHhhhhh
Confidence 33332222 33 5666666666655544
No 42
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=94.06 E-value=2.2 Score=41.32 Aligned_cols=203 Identities=15% Similarity=0.169 Sum_probs=112.3
Q ss_pred HHHHHhhHHHhhHhhhcCChHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh
Q 018715 84 LFFIYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF 156 (351)
Q Consensus 84 ~~~~i~L~~ilF~aGl~l~~~~l-------~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgail 156 (351)
++-+....+..|..|+|++++.. ||..-+ ..-++.|++.++ ..|+.++. +.+.. ..+. ++=
T Consensus 62 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP-i~AAlGGmivPA-----liy~~~n~-~~~~~--~~GW---aIP 129 (388)
T PRK09561 62 WINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALP-VIAAIGGMLVPA-----LIYLLFNY-ADPVT--REGW---AIP 129 (388)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHH-HHHHHhchHHHH-----HHHhheec-CCCcc--cCcc---ccc
Confidence 34456666667889999986654 222222 233556666654 33444422 11100 0011 456
Q ss_pred ccccHHHHHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 157 AATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAG 233 (351)
Q Consensus 157 saTdp~~v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G 233 (351)
.+||.+-...++.-. +.| .++..+..-++.||..+++.-.++. .++.+ +. +.......
T Consensus 130 ~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~~i~---~~-------~L~~a~~~------ 190 (388)
T PRK09561 130 AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY---TSDLS---MV-------SLGVAAVA------ 190 (388)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---CCCcc---HH-------HHHHHHHH------
Confidence 799999999998644 466 5899999999999999997766553 22222 11 11111111
Q ss_pred HHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHH
Q 018715 234 LLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVA 313 (351)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 313 (351)
....+.+++.. .+ ....-+......++.-..-|.++-+|.+..|+.+-.+.+++.+ --++.+|..+......
T Consensus 191 ~~~l~~ln~~~----v~--~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~--pl~rleh~L~p~v~~~ 262 (388)
T PRK09561 191 IAVLAVLNLCG----VR--RTSVYILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRS--PAERLEHGLHPWVAFL 262 (388)
T ss_pred HHHHHHHHHcC----Cc--cchHHHHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCC--HHHHHHHHhhhhhhhe
Confidence 22233334432 11 1222233555667766778999999999999999764322211 1234455555544444
Q ss_pred HHHHHHHh--hhhh
Q 018715 314 EIFIFLYV--GMDA 325 (351)
Q Consensus 314 ~~~~Fv~i--G~~i 325 (351)
-.-+|.+. |..+
T Consensus 263 IlPlFAfaNAGV~l 276 (388)
T PRK09561 263 ILPLFAFANAGVSL 276 (388)
T ss_pred eHHHHHhhcCCeee
Confidence 44455544 5444
No 43
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=93.77 E-value=4.8 Score=36.00 Aligned_cols=134 Identities=14% Similarity=0.054 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHH-HhhHHHhhHhhhcCChHHHHHh
Q 018715 31 ALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFI-YLLPPIIFNAGFQVKKKQFFRN 109 (351)
Q Consensus 31 ~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~-i~L~~ilF~aGl~l~~~~l~~~ 109 (351)
.+-+....+++.+.||.|-|..-+.++.=+++-.++... +. +.+....+.+++.. +.-..+-|..-+.=+++.+||+
T Consensus 12 ~lTl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~~-~i-~Y~~Y~~g~~~i~~lLgPAtVAlAvPLYkq~~~ik~~ 89 (230)
T COG1346 12 LLTLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLLF-GI-SYEDYMKGGQWINFLLGPATVALAVPLYKQRHLIKRH 89 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHc-CC-CHHHHhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344455667777777677555544433323333333222 22 11112223333332 2233344555566689999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh--ccccHHHHHHHhcccC-CchhH
Q 018715 110 FMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF--AATDSVCTLQVLNQDE-TPLLY 177 (351)
Q Consensus 110 ~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgail--saTdp~~v~~il~~~~-~~~l~ 177 (351)
|++++.-...|...........+.+ + +.+-. +.-+++ |.|.|.+ ..+-++.| .|.+.
T Consensus 90 w~~I~~g~~vGs~~ai~s~~llak~-~------g~~~~---~~~Sl~PkSvTTpiA-m~vs~~iGGip~lt 149 (230)
T COG1346 90 WKPILAGVLVGSVVAIISGVLLAKL-F------GLSPE---LILSLLPKSVTTPIA-MEVSESIGGIPALT 149 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-h------CCCHH---HHHHhcccccccHHH-HHHHHhcCCchHHH
Confidence 9999887777777654444333333 3 44433 222333 5666666 35556654 55543
No 44
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=93.61 E-value=3.2 Score=34.97 Aligned_cols=104 Identities=11% Similarity=-0.060 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHH
Q 018715 34 CACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTI 113 (351)
Q Consensus 34 ~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i 113 (351)
.++...+.+. ++.++|. +.++..++.+.......... .+ -|+.+...+...+-...|.+.+.+.+++..+..
T Consensus 5 ~~~~~~g~l~-~~l~~Pa--~~llG~mi~~~~~~~~~~~~----~~-~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~ 76 (156)
T TIGR03082 5 LVGLAGGLLA-SLLGLPA--AWLLGPLLAGAVLSLAGGLE----IT-LPPWLLALAQVVIGILIGSRFTREVLAELKRLW 76 (156)
T ss_pred HHHHHHHHHH-HHHCCCc--HHHHHHHHHHHHHHhcCCcc----CC-CCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 3444444544 4578885 34445555554433221111 12 345678888888889999999987776665543
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH
Q 018715 114 ML--FGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA 151 (351)
Q Consensus 114 ~~--la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~all 151 (351)
.. .....++..+...+...+... ++++.++++
T Consensus 77 ~~~l~~~~~~l~~~~~~~~~l~~~~------~~~~~ta~L 110 (156)
T TIGR03082 77 PAALLSTVLLLALSALLAWLLARLT------GVDPLTAFL 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHH
Confidence 32 222222223334444444444 788888764
No 45
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=93.29 E-value=2.8 Score=39.76 Aligned_cols=104 Identities=9% Similarity=-0.019 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHH
Q 018715 35 ACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIM 114 (351)
Q Consensus 35 ~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~ 114 (351)
.+...+..+.|+.|+|.. .++..++.+.......... .+. |+.+...+-..+=-..|.+.|.+.+|+..+...
T Consensus 162 ~~~~~g~~l~~~l~iPa~--~llGpml~~a~~~~~~~~~----~~~-P~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~ 234 (318)
T PF05145_consen 162 LAALAGGLLARRLRIPAP--WLLGPMLVSAILNLFGGPS----FSL-PPWLVNAAQVLIGASIGSRFTRETLRELRRLLP 234 (318)
T ss_pred HHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhCCC----CCC-CHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 334455555566888853 4444444444333221111 222 456788888888889999999888777665433
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH
Q 018715 115 L--FGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA 151 (351)
Q Consensus 115 ~--la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~all 151 (351)
. ......+..+...++..+.+. ++++.++++
T Consensus 235 ~~l~~~~~~l~~~~~~a~~l~~~~------~~~~~t~~L 267 (318)
T PF05145_consen 235 PALLSTLLLLALCALFAWLLSRLT------GIDFLTALL 267 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHH
Confidence 2 222233333344555555554 788887665
No 46
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=92.99 E-value=9.8 Score=37.28 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=22.3
Q ss_pred HHHHHHHHHhh-----ccchHHHHHHHHHhhhcccc
Q 018715 261 AYLSYMLAELF-----YLSGILTVFFCGIVMSHYTW 291 (351)
Q Consensus 261 ~~~~~~~ae~l-----g~Sgilav~~~Gl~l~~~~~ 291 (351)
....|.+.+.+ .+.....+++.|++++|..+
T Consensus 228 i~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~ 263 (398)
T TIGR00210 228 LLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLS 263 (398)
T ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 34455555543 57889999999999998554
No 47
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=92.84 E-value=7.3 Score=38.15 Aligned_cols=143 Identities=9% Similarity=-0.027 Sum_probs=89.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHH
Q 018715 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFV 126 (351)
Q Consensus 47 ~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~ 126 (351)
..+|.-+..++.|+++-.+........ ..+-.-+.+.++.+-+.+-.+=.++|+.++.+++.+.+.+...+++++..
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~---~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l 319 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPW---VAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMAL 319 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccc---cchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568988888888888877654332111 11112244677888888888888999999999999999999999988765
Q ss_pred HHHHHHHHHHhhcccCCCCHHHHH----HHhhhhccccHHHH--HHHhcccCCc-hhHHH-HHHHhhhhhHHHHHHHHHH
Q 018715 127 IISAGAVHFFKQMNIGTLKIGDYL----AIGAIFAATDSVCT--LQVLNQDETP-LLYSL-VFGEGVVNDATSVVLFNAI 198 (351)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~al----llgailsaTdp~~v--~~il~~~~~~-~l~~~-l~gEs~lnD~~aivlf~~~ 198 (351)
..-+..+..+ +-++..+. ..|--+.+|..+.. .++-++++.+ |-.-+ =.--+.+-|.........+
T Consensus 320 ~~~fv~fr~m------g~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 320 YAIFVTFRLM------GKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred HHHHHhHHhc------cchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceehhhhHHHHHHHHhhHHHHHHH
Confidence 5544444444 22344333 35555555554443 3566777754 52222 1345566676665554444
No 48
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=92.41 E-value=4.5 Score=38.21 Aligned_cols=138 Identities=20% Similarity=0.283 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcC--ChHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018715 51 ESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQV--KKKQFFRNFMTIMLFGAVGTLISFVII 128 (351)
Q Consensus 51 ~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l--~~~~l~~~~~~i~~la~~g~~~~~~~~ 128 (351)
..+..++.|+++|.... +.+. ...-.+-.+ .+.-.|++.+.|-|+.- +.+++||..+.....++..-++...+.
T Consensus 178 ~sv~LLlGgliIG~~~g--~~g~-~~i~pf~~~-lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pli~a~ig 253 (327)
T PF05982_consen 178 KSVVLLLGGLIIGFLAG--PEGV-ESIKPFFVD-LFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMPLINALIG 253 (327)
T ss_pred chHHHHHHHHHHhheeC--ccch-hhccchhhc-cHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35667777888886432 1111 111111112 45556778888888854 467888888888888877777665444
Q ss_pred HHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhccc--C-CchhHHHH-HHHh-hhhhHHHHHHHHHHH
Q 018715 129 SAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD--E-TPLLYSLV-FGEG-VVNDATSVVLFNAIQ 199 (351)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~--~-~~~l~~~l-~gEs-~lnD~~aivlf~~~~ 199 (351)
.... ++. +++...+.+++.+.++-|=.++-+.+|.. + +|.++-.. .|-. -+|=.+++.+|..+.
T Consensus 254 ~~lg-~~~------gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~SLgiTFPfNi~iGIPLY~~la 322 (327)
T PF05982_consen 254 IGLG-WLL------GLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTASLGITFPFNILIGIPLYYALA 322 (327)
T ss_pred HHHH-HHh------CCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHHHhcccchhHhhccHHHHHHH
Confidence 3333 444 89999999999888777766666666643 1 23222211 1111 467777777776544
No 49
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.06 E-value=1.3 Score=45.56 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChH---HHHH
Q 018715 32 LLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK---QFFR 108 (351)
Q Consensus 32 lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~---~l~~ 108 (351)
.+.++..+|++=-+..++-.+.+.+++|+++|... .+.+ +.+.++++.+.+|..|++.-.+ .+||
T Consensus 18 ~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g-----------~~i~-~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~ 85 (562)
T TIGR03802 18 SLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLG-----------IQID-PGVKAVFFALFIFAIGYEVGPQFFASLKK 85 (562)
T ss_pred HHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcC-----------CCCC-hHHHHHHHHHHHHHhhhccCHHHHHHHHh
Confidence 34444444444333455666788999999999521 1122 3477899999999999999855 5556
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCH--HHHHHHhhhhccccHHHHHHHhcccC
Q 018715 109 NFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKI--GDYLAIGAIFAATDSVCTLQVLNQDE 172 (351)
Q Consensus 109 ~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~--~~alllgailsaTdp~~v~~il~~~~ 172 (351)
+..+...+++..++.. ..+++.+++++ +++. ...++=||.-+...-++....+++.+
T Consensus 86 ~g~~~~~~a~~~~~~~-~~~~~~~~~~~------g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~ 144 (562)
T TIGR03802 86 DGLREIILALVFAVSG-LITVYALAKIF------GLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLG 144 (562)
T ss_pred ccHHHHHHHHHHHHHH-HHHHHHHHHHh------CCCHHHHHHHHhchhhccHHHHHHHHHHHhcC
Confidence 5556666665555544 44455555555 5543 44555566555444455455554443
No 50
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=91.86 E-value=3.9 Score=36.87 Aligned_cols=107 Identities=16% Similarity=0.094 Sum_probs=54.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhcc-cCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHH-hhHHHhhHh
Q 018715 20 HKSVVSMNLFVALLCACIVIGHLLEENR-WMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIY-LLPPIIFNA 97 (351)
Q Consensus 20 ~~~~~~l~~~i~lL~~~~~~~~~l~~~~-~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i-~L~~ilF~a 97 (351)
|.+.++-+..+.+-+....+++.+.||. +-|-.-+.++.=+++-..+. ..+. +.+......+++..+ +-...-+..
T Consensus 3 ~~~~~~p~~~l~lTl~~y~~~~~l~~r~~~~~~lnPll~s~~~ii~~L~-~~~i-~Y~~Y~~g~~~l~~lLgPAtVALAv 80 (232)
T PRK04288 3 HLSTMTPYFGILVSLIAFGIGTILFKKSKGFFLFTPLFVAMVLGIAFLK-LTGI-SYEEYNIGGDIISFFLEPATIAFAI 80 (232)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHH-HhCC-CHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3333333344555556667778887766 65544444333222222222 2221 111122233333322 222233444
Q ss_pred hhcCChHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018715 98 GFQVKKKQFFRNFMTIMLFGAVGTLISFVII 128 (351)
Q Consensus 98 Gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~ 128 (351)
-+.-+++.+||++++++.-...|...+.+..
T Consensus 81 PLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~ 111 (232)
T PRK04288 81 PLYKKRDVLKKYWWQILGGIVVGSVCSVLII 111 (232)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566789999999999887777777664433
No 51
>PRK04972 putative transporter; Provisional
Probab=91.61 E-value=3.2 Score=42.60 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhh----cccCChhHHHHHHHHHHHHHHHhhcCCCCccccccCh---hHHHHHhhHHHhhHhhhcCC---
Q 018715 33 LCACIVIGHLLEE----NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE---DLFFIYLLPPIIFNAGFQVK--- 102 (351)
Q Consensus 33 L~~~~~~~~~l~~----~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~aGl~l~--- 102 (351)
++++.++|.+--+ ..++-...+.++.|+++|..-... +...++++ ..+.+++|...+...|++--
T Consensus 390 i~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~-----~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f 464 (558)
T PRK04972 390 FIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANH-----PTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGI 464 (558)
T ss_pred HHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccccC-----CCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 3445555554332 233444678899999999643211 11122222 35778888888888887665
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh-ccccHHHHHHHhcccC
Q 018715 103 KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQVLNQDE 172 (351)
Q Consensus 103 ~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgail-saTdp~~v~~il~~~~ 172 (351)
.+.+++++++.+..+...++++.++..++.++++ ++++. .+.|++. +-|+|.+.....+..+
T Consensus 465 ~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~------k~~~~--~~~G~~aG~~t~~~~l~~~~~~~~ 527 (558)
T PRK04972 465 NNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVL------RMNRA--LLFGAIMGARTCAPAMEIISDTAR 527 (558)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCHH--HHHHHHhCCCCCcHHHHHHHhhcC
Confidence 4566777778888777777777777777777777 67776 5677776 5677776655555444
No 52
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=91.00 E-value=13 Score=34.54 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.9
Q ss_pred hHHHhhHhhhcCChHHHHHhhH
Q 018715 90 LPPIIFNAGFQVKKKQFFRNFM 111 (351)
Q Consensus 90 L~~ilF~aGl~l~~~~l~~~~~ 111 (351)
+..++|..|.+++.+++++..+
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~ 35 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLR 35 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHh
Confidence 8888999999999999988765
No 53
>PRK03818 putative transporter; Validated
Probab=90.95 E-value=2 Score=44.05 Aligned_cols=105 Identities=12% Similarity=0.136 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCCh--
Q 018715 26 MNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKK-- 103 (351)
Q Consensus 26 l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~-- 103 (351)
++.+...+.++.++|++=-+..++- ..+.+++|+++|.... .......+...+.+.++++...+|..|++.-.
T Consensus 8 ~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~----~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f 82 (552)
T PRK03818 8 VSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVS----QFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGF 82 (552)
T ss_pred HHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhcccc----ccCcccChHHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 3333344445555555222223343 4678888898885321 11111111111346789999999999998885
Q ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 104 -KQFFRNFMTIMLFGAVGTLISFVIISAGAVHFF 136 (351)
Q Consensus 104 -~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l 136 (351)
+.+|++..+...++++.++.+.+ +++..++++
T Consensus 83 ~~~l~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~ 115 (552)
T PRK03818 83 FSSLRKSGLRLNLFAVLIVILGGL-VTAILHKLF 115 (552)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 45666666666777666666544 355556666
No 54
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=90.32 E-value=12 Score=32.93 Aligned_cols=83 Identities=20% Similarity=0.159 Sum_probs=53.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHhhcCCCCccccc---------cChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHH
Q 018715 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLM---------FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFG 117 (351)
Q Consensus 47 ~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~---------~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la 117 (351)
-|+|.+...++.|+++.+.......++- ...+ +....+.+++. -..+++.|.++.||....-..--
T Consensus 38 Gr~hgSAIAI~lGL~lAy~gG~~TgG~k-GlaDi~lfsGiglmGGaMlRDfAI----vaTAf~v~~~e~kkaG~~G~vsL 112 (254)
T TIGR00808 38 GKLHGSAIAITMGLVLAYVGGVYTGGEK-GLADIAIFGGFGLMGGAMLRDLAI----VATAFEVDVKEVKKAGKVGMVAL 112 (254)
T ss_pred CCcchhHHHHHHHHHHHHHcccccCCcc-ccchhhhhcchhhhhhHHHHHHHH----HHHhhcCcHHHHHHcchHHHHHH
Confidence 4688899999999999876554332221 1111 11123445444 56789999999999988766656
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018715 118 AVGTLISFVIISAGAVH 134 (351)
Q Consensus 118 ~~g~~~~~~~~~~~~~~ 134 (351)
+.|++++++.....++.
T Consensus 113 ~~G~v~~F~~Ga~vA~a 129 (254)
T TIGR00808 113 LLGCVIPFVIGAMVAWA 129 (254)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67888887655554443
No 55
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=88.92 E-value=22 Score=33.89 Aligned_cols=138 Identities=11% Similarity=0.014 Sum_probs=63.9
Q ss_pred HhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHH
Q 018715 88 YLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQV 167 (351)
Q Consensus 88 i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~i 167 (351)
+++.+++|.-|.+++.+++||..++--. -..+....+...-..++.+-..+ ++....+..|-++.+.-|..+.+.
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~-~~~~~~~qfvi~Plla~~l~~l~----~~~~p~l~~GliLv~~~Pgg~~S~ 121 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKG-LILSLFINWIIGPFLMFLLAWLF----LRDLFEYIAGLILLGLARCIAMVF 121 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchH-HHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHhcchHHHHH
Confidence 4555789999999999999887655222 12233333333333333221111 122223555555554444444433
Q ss_pred h----cccCCchhHHHHHHHhhhhhHHHHHHHHHHHHhhhh--------ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 168 L----NQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLS--------HINLSIALKFVGSFFYLFIASTMLGVIAGL 234 (351)
Q Consensus 168 l----~~~~~~~l~~~l~gEs~lnD~~aivlf~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~ 234 (351)
. .+.+.+ +... -..+|...+.++.-.......+ ...+.+......+.+...+.=+++|...-.
T Consensus 122 v~T~lAkGnva-lsv~---lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~ 196 (328)
T TIGR00832 122 VWNQLAKGDPE-YTLV---LVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTVITVPWETIAKSVLIYLGIPLIAGILTRY 196 (328)
T ss_pred HHHHHcCCCHH-HHHH---HHHHHHHHHHHHHHHHHHHHHhcCccccccceeeeCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 222222 2222 2256666666655433322111 001123444455555555555555554433
No 56
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=88.83 E-value=9.1 Score=37.50 Aligned_cols=153 Identities=16% Similarity=0.134 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhc-C
Q 018715 23 VVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQ-V 101 (351)
Q Consensus 23 ~~~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~-l 101 (351)
...+..-..+-+....+|.++++..++|.....++.-.++=. ....|+...+. ...-.+.+..-..+++++-.|.. +
T Consensus 245 ~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~-~~lvP~~~e~~-a~~~~~f~~~~lt~~lLvgiGv~~~ 322 (414)
T PF03390_consen 245 FSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKA-FGLVPESLEEG-AKQWYKFFSKNLTWPLLVGIGVAYT 322 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hCcCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 344444444555566778888887789988776655444432 11111111111 11112446778899999999998 9
Q ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhh-hhc---cccHHHHHHHhcccC-Cc--
Q 018715 102 KKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGA-IFA---ATDSVCTLQVLNQDE-TP-- 174 (351)
Q Consensus 102 ~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllga-ils---aTdp~~v~~il~~~~-~~-- 174 (351)
|++++.+.......+-...+++.....+.....++ ++-..++-+-+. |.+ -|.=+++++--++.+ -|
T Consensus 323 ~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~------g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~LmpFA 396 (414)
T PF03390_consen 323 DLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLV------GFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMPFA 396 (414)
T ss_pred cHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHhhhcccCCCCCCcchheehhhhcccccHH
Confidence 99999998877666666666666666665555555 565555554444 332 243444455555555 24
Q ss_pred hhHHHHHHH
Q 018715 175 LLYSLVFGE 183 (351)
Q Consensus 175 ~l~~~l~gE 183 (351)
++.+.+=|.
T Consensus 397 QIstRiGGA 405 (414)
T PF03390_consen 397 QISTRIGGA 405 (414)
T ss_pred HHHHhhhhH
Confidence 455555444
No 57
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=88.43 E-value=13 Score=35.62 Aligned_cols=107 Identities=10% Similarity=0.049 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhH
Q 018715 32 LLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFM 111 (351)
Q Consensus 32 lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~ 111 (351)
++....+.+..+.|+.|+|. +.++..+++|....... ....+ -|+....++-..+--..|.++|...+++..+
T Consensus 192 ~l~~~~~~~g~l~~~lr~Pa--~~ll~~l~l~a~v~~~~----~~~~~-lP~wl~~va~~~iG~~IG~~f~~~~l~~~~r 264 (352)
T COG3180 192 LLILAALLGGLLGKLLRFPA--PTLLGPLLLGAIVHFGG----GITIQ-LPAWLLAVAQALIGALIGSRFDRSILREAKR 264 (352)
T ss_pred HHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHhhccc----ceeee-CCHHHHHHHHHHHHHHHcccccHHHHHHhHh
Confidence 34444555666666688885 46667777776544222 11122 2456666666677777899999888877666
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH
Q 018715 112 TIM--LFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA 151 (351)
Q Consensus 112 ~i~--~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~all 151 (351)
... .+..++..+-+...+...+++. +.|+.++++
T Consensus 265 ~~~~~~v~ii~l~~~~~~~a~ll~~~~------~i~~~ta~L 300 (352)
T COG3180 265 LLPAILVSIIALMAIAAGMAGLLSWLT------GIDLNTAYL 300 (352)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHH
Confidence 532 3333444333344444444443 788887765
No 58
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=88.03 E-value=9.8 Score=39.10 Aligned_cols=106 Identities=22% Similarity=0.148 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCccccccCh---hHHHHHhhHHHhhHhhhcCCh---HHHHHhhHHHHHHHHHHHHHH
Q 018715 51 ESITALIIGLCTGIVILLTTNGTSSHVLMFSE---DLFFIYLLPPIIFNAGFQVKK---KQFFRNFMTIMLFGAVGTLIS 124 (351)
Q Consensus 51 ~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~aGl~l~~---~~l~~~~~~i~~la~~g~~~~ 124 (351)
...+.+++|+++|......+ ...++++ ..+.++++...++..|++--. +.+|+++.+...++..-++.+
T Consensus 417 ~~~g~l~~gl~~g~~~~~~~-----~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~ 491 (562)
T TIGR03802 417 TGGGALISGLVFGWLRSKHP-----TFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILP 491 (562)
T ss_pred hhHHHHHHHHHHHHhcccCC-----cceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44577888888886432111 1112333 247789999888988888774 456777777777777777777
Q ss_pred HHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh-ccccHHHHHHHhc
Q 018715 125 FVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQVLN 169 (351)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~alllgail-saTdp~~v~~il~ 169 (351)
.++..+..++++ ++++. ...|++. +-|+|.+.....+
T Consensus 492 ~~~~~~~~~~~~------~~~~~--~~~G~~aG~~t~t~~l~~a~~ 529 (562)
T TIGR03802 492 LIITMLIGKYVL------KYDPA--LLLGALAGARTATPALGAVLE 529 (562)
T ss_pred HHHHHHHHHHHh------CCCHH--HHHHHhhccCCCcHHHHHHHH
Confidence 666666665666 66655 5667665 4566666544443
No 59
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=87.84 E-value=14 Score=33.29 Aligned_cols=103 Identities=17% Similarity=0.094 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHH--HhhHhhhcCCh
Q 018715 26 MNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPP--IIFNAGFQVKK 103 (351)
Q Consensus 26 l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~--ilF~aGl~l~~ 103 (351)
++..+.+-+.....++.+.||.+-|-.-+.++.=+++-..+... + .+.+......+.+. ..|.| .-+..-+.-++
T Consensus 4 ~~~~l~lTl~~y~~~~~l~~r~~~~~lnPvl~~~~~ii~~L~~~-~-i~Y~~Y~~g~~~l~-~lLgPAtVALAvPLY~~~ 80 (226)
T TIGR00659 4 IIVSLFLTLLVFFGAKKLYQRFKRPYLNPLLLTPLVLVGILLLV-G-IPYESYMLGGGVIN-DLLGPAVVALAIPLYKQL 80 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHh-C-CCHHHHHHhhHHHH-HhhHHHHHHHHHHHHHhH
Confidence 33444455566677788777666654444433322222222221 1 11111112223322 22222 23334445678
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 018715 104 KQFFRNFMTIMLFGAVGTLISFVIISAG 131 (351)
Q Consensus 104 ~~l~~~~~~i~~la~~g~~~~~~~~~~~ 131 (351)
+.+||++++++.-...|.+.+.......
T Consensus 81 ~~lk~~~~~Il~~~~~G~~~~~~s~~~l 108 (226)
T TIGR00659 81 PQIKKYWKEIILNVAVGSVIAIISGTLL 108 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887677776654433333
No 60
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=87.45 E-value=9.3 Score=35.90 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=79.4
Q ss_pred HhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH--HHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHH
Q 018715 43 LEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF--IYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVG 120 (351)
Q Consensus 43 l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~--~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g 120 (351)
.++..|+|. +.+++=+++|....-+.|+..+..=.+....+. .-.+...+|-.|-++|.|...+..|+-..+...=
T Consensus 4 ~~~i~kiPG--G~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K 81 (314)
T PF03812_consen 4 KKTIEKIPG--GMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVK 81 (314)
T ss_pred hHhhccCCC--ceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHH
Confidence 334456774 455566666665554433321111122222221 3456677899999999999988888877766666
Q ss_pred HHHHHHHHHHHHHHHHhhcccC-C-CCHHHHHHHhhhhccccHHHHHHHhcccCCc
Q 018715 121 TLISFVIISAGAVHFFKQMNIG-T-LKIGDYLAIGAIFAATDSVCTLQVLNQDETP 174 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~alllgailsaTdp~~v~~il~~~~~~ 174 (351)
+.+. .++++....+++.-|++ + +--..++.+=+.++.+++..-.++.+|++.+
T Consensus 82 ~~~~-~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~ 136 (314)
T PF03812_consen 82 FIIG-ALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDE 136 (314)
T ss_pred HHHH-HHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCH
Confidence 6655 45556655566432220 1 1223456677889999999999999999976
No 61
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=86.99 E-value=22 Score=34.53 Aligned_cols=97 Identities=14% Similarity=0.083 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhh-cccCChhHHHHHHHHHHHHHHHhhcCCCCccccccCh---hHHHHHhhHHHhhHhhhcCChHHHHHh
Q 018715 34 CACIVIGHLLEE-NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE---DLFFIYLLPPIIFNAGFQVKKKQFFRN 109 (351)
Q Consensus 34 ~~~~~~~~~l~~-~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~aGl~l~~~~l~~~ 109 (351)
.++..+.+.+++ ...+|.-+..++.|+++-......... +.|. +.+.++.+-+.+..+=..+|...+.+.
T Consensus 231 ~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~------~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~ 304 (368)
T PF03616_consen 231 GLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKY------KIDRKTIDRISGISLDLFLAMALMSLKLWVLADY 304 (368)
T ss_pred HHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCcc------cCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 334444444443 456888777887777776554322211 1232 346778888888888889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 110 FMTIMLFGAVGTLISFVIISAGAVHFF 136 (351)
Q Consensus 110 ~~~i~~la~~g~~~~~~~~~~~~~~~l 136 (351)
..|.+.+-..+++++....-++.+-.+
T Consensus 305 a~Plliil~~q~i~~~~f~~fv~fr~~ 331 (368)
T PF03616_consen 305 ALPLLIILAVQTILMVLFAYFVTFRVM 331 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999988777887776544433333333
No 62
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=86.98 E-value=12 Score=31.10 Aligned_cols=110 Identities=11% Similarity=-0.023 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH-HHhhHHHhhHhhhcCC
Q 018715 24 VSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF-IYLLPPIIFNAGFQVK 102 (351)
Q Consensus 24 ~~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~ilF~aGl~l~ 102 (351)
..+...+.+++.+...|+.+.+-.++|-+-. ++|+++=...+...... .+..+-..+.+. +..+-++=-..|.=..
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGs--ViGMlLL~l~L~~~~vk-~~~v~~~a~~LL~~m~LfFVPagVGim~~ 83 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPAS--VIGLVLLFVLLCTKVVK-LEQVESLGTALTNNIGFLFVPSGISVINS 83 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHHHhCCcC-HHHHHHHHHHHHHHHHHHHhhhHhHHHHh
Confidence 3444556677778888888887666553322 23433322222111111 111111112222 2222222223466667
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 103 KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFF 136 (351)
Q Consensus 103 ~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l 136 (351)
++.+++++.+++...+++++++..+++....++.
T Consensus 84 ~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~ 117 (141)
T PRK04125 84 LGVMSQYPVQIIGVIIVATILLLACTGLFSQFIL 117 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988888888888777776666543
No 63
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=86.41 E-value=30 Score=32.79 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=59.6
Q ss_pred HHHhhHhhhcCChHHHHHh---hHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-hhhccccHHH
Q 018715 91 PPIIFNAGFQVKKKQFFRN---FMTIM---LFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AIFAATDSVC 163 (351)
Q Consensus 91 ~~ilF~aGl~l~~~~l~~~---~~~i~---~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllg-ailsaTdp~~ 163 (351)
.+..+..|+|++++.+.-+ +++.. .-+..|++.++ ..|+.++ .+-+.. .=| ++-++||.+-
T Consensus 72 AvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PA-----liy~~~n------~~~p~~-~~GWaIP~ATDiAF 139 (390)
T COG3004 72 AVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPA-----LIYLALN------AGDPAT-LEGWAIPMATDIAF 139 (390)
T ss_pred HHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhh-----hHhheee------cCChhh-hcCcCcccHHHHHH
Confidence 3344567898887766433 33322 22344555443 2344442 111111 111 6678999999
Q ss_pred HHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHH
Q 018715 164 TLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQ 199 (351)
Q Consensus 164 v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~ 199 (351)
...++.-. ++| .++.-+..-+++||.-+++.-..+.
T Consensus 140 AlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFY 178 (390)
T COG3004 140 ALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFY 178 (390)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 99998754 467 5899999999999988887766653
No 64
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=85.98 E-value=13 Score=31.35 Aligned_cols=111 Identities=12% Similarity=0.143 Sum_probs=62.0
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChH---HHHHhh-HHHHHHHHHHHHHH
Q 018715 49 MNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK---QFFRNF-MTIMLFGAVGTLIS 124 (351)
Q Consensus 49 lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~---~l~~~~-~~i~~la~~g~~~~ 124 (351)
+-...+.+++|+++|......+ .......-.++.+.++++.+.++..|++.-.+ .+||+. ...+.+....++++
T Consensus 21 LG~~~G~L~vgL~~G~~~~~~p--~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~ 98 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHFGATGP--LTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVP 98 (154)
T ss_pred ecccHHHHHHHHHHHhccccCC--cceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3346788999999996421110 00011111234577899999999999988754 455543 22333334444444
Q ss_pred HHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh-ccccHHHHHHHhc
Q 018715 125 FVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQVLN 169 (351)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~alllgail-saTdp~~v~~il~ 169 (351)
..+..+..++++ ++++. ...|.+. +-|+|.+.....+
T Consensus 99 ~~~~~~~~~~~~------~~~~~--~~~G~~aGa~T~tpaL~aa~~ 136 (154)
T TIGR01625 99 TLLVAVALIKLL------RINYA--LTAGMLAGATTNTPALDAAND 136 (154)
T ss_pred HHHHHHHHHHHh------CCCHH--HHHHHHhccccChHHHHHHHH
Confidence 455555666666 66654 5666665 4455555444443
No 65
>PRK04972 putative transporter; Provisional
Probab=85.77 E-value=7.7 Score=39.83 Aligned_cols=97 Identities=22% Similarity=0.282 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCCh---HHHHH
Q 018715 32 LLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKK---KQFFR 108 (351)
Q Consensus 32 lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~---~~l~~ 108 (351)
.+.++..+|++=-+..++-...+.+++|+++|... .+. |+...++++.+.+|..|++.-. +.+||
T Consensus 20 ~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~-----------~~~-~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~ 87 (558)
T PRK04972 20 VLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQH-----------FSI-NTDALNLGFMLFIFCVGVEAGPNFFSIFFR 87 (558)
T ss_pred HHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCC-----------CCC-ChHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34445555554434456767779999999999531 112 2335688898899999998874 45566
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHH
Q 018715 109 NFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIG 147 (351)
Q Consensus 109 ~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (351)
+..+...+++..++.+.++ ++...+++ ++++.
T Consensus 88 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~ 119 (558)
T PRK04972 88 DGKNYLMLALVMVGSALVI-ALGLGKLF------GWDIG 119 (558)
T ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHh------CCCHH
Confidence 6666666676666655433 33444445 56654
No 66
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=84.92 E-value=1.5 Score=39.14 Aligned_cols=78 Identities=9% Similarity=-0.027 Sum_probs=63.8
Q ss_pred HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHH
Q 018715 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT 164 (351)
Q Consensus 85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v 164 (351)
...+.+-++.-++|++++.|.+++.......+.+......+-.-+...++.+ +.+|.++++.|.+..+..+...
T Consensus 159 l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l------~~~ii~~~l~g~v~~~i~~~~~ 232 (252)
T KOG3826|consen 159 LRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLL------AGPIIWAFLLGIVIGSILWRFP 232 (252)
T ss_pred hhhccchHHHHHhhhcccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHh------ccchHHHhccccceeeeecCCc
Confidence 5677788888999999999999999998888887777777666666677776 8999999999999998887665
Q ss_pred HHHh
Q 018715 165 LQVL 168 (351)
Q Consensus 165 ~~il 168 (351)
.+=.
T Consensus 233 r~~~ 236 (252)
T KOG3826|consen 233 RPDY 236 (252)
T ss_pred cccc
Confidence 4433
No 67
>PRK01658 holin-like protein; Validated
Probab=84.16 E-value=20 Score=28.92 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH-HHhhHHHhhHhhhcCCh
Q 018715 25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF-IYLLPPIIFNAGFQVKK 103 (351)
Q Consensus 25 ~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~ilF~aGl~l~~ 103 (351)
.+...+.+++.+...|+.+.+..++|-+-. ++|+++=.......... .+..+...+.+. +..+-++=-..|.=-..
T Consensus 5 ~~l~~l~il~~~~~~G~~i~~~l~lpiPGs--ViGmlLL~~~L~~~~ik-~~~v~~~a~~Ll~~m~llFVPa~VGi~~~~ 81 (122)
T PRK01658 5 KLLVQIALLYVFALVGTWIQEQLHLPIPGS--IIGIFLLLLLLSFKILK-LKWIELGAETLLAELPLFFIPSAVGVMNYG 81 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHHhCCcC-HHHHHHHHHHHHHHHHHHHHHhhhHHHHhH
Confidence 344456677777888888887666553322 24443322222111111 111221122222 22222222234666667
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 104 KQFFRNFMTIMLFGAVGTLISFVIISAGAVHFF 136 (351)
Q Consensus 104 ~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l 136 (351)
+.+++++.++....+.+++++..+++....++.
T Consensus 82 ~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l~ 114 (122)
T PRK01658 82 DFLSSKGISLFLVVVISTFVVMIVTGYLTQLLA 114 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999888999888877777766554
No 68
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=83.86 E-value=25 Score=33.13 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=42.0
Q ss_pred hhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh
Q 018715 89 LLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG 153 (351)
Q Consensus 89 ~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllg 153 (351)
.+|+..|.-|.++|++++.+.+.+.+.+++..+..+....-+.- -++ +.+-..+.+.|
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~-rll------g~~~~~g~li~ 254 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFAD-RLV------GGTGIAGAAAS 254 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHh------CCChhHHHHHH
Confidence 67777888999999999999999988888777766544333222 233 56666677776
No 69
>COG2985 Predicted permease [General function prediction only]
Probab=83.60 E-value=11 Score=37.66 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=77.7
Q ss_pred cCccchHHHHHHHHHHHHHHHHHHHHhh-----cccCChhHHHHHHHHHHHHHHHhhcCCCCccccccCh---hHHHHHh
Q 018715 18 SDHKSVVSMNLFVALLCACIVIGHLLEE-----NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE---DLFFIYL 89 (351)
Q Consensus 18 ~~~~~~~~l~~~i~lL~~~~~~~~~l~~-----~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~---~~~~~i~ 89 (351)
+.|.+..+++-+.+-+.++.++|.+--- ..++-..-+.+++++++|.+-... ...+.+++ ..+.+++
T Consensus 359 ~~~lq~~~lLp~~ig~~LGvllGsIp~~~pg~~s~~LG~aGGpLivaLiLG~ig~iG-----pl~w~mP~~An~~lrelG 433 (544)
T COG2985 359 QIKLQQVDLLPFAIGLGLGVLLGSIPFPLPGPGSFKLGNAGGPLIVALILGFIGAIG-----PLTWFMPPGALLALRELG 433 (544)
T ss_pred cceeeeeccHHHHHHHHHHHhheeeEeccCCCceEeecccccHHHHHHHHHHhcccC-----ceEEEcChhHHHHHHHHH
Confidence 3444555555555555555555543210 122224557788888888653211 11233333 2245655
Q ss_pred hHHHhhHhhhcCC-----hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh-ccccHHH
Q 018715 90 LPPIIFNAGFQVK-----KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVC 163 (351)
Q Consensus 90 L~~ilF~aGl~l~-----~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgail-saTdp~~ 163 (351)
+. +|.+|..+| .+.+-...-++...+.+-++++.+.++...++++ +.+|. .+.|++. +-|||.+
T Consensus 434 l~--lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v~------kmn~~--~l~G~laGs~T~ppa 503 (544)
T COG2985 434 LA--LFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYVL------KMNWL--LLCGALAGSMTDPPA 503 (544)
T ss_pred HH--HHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHH------hccHH--HHhhHHhcCCCChHH
Confidence 54 455655555 2333445556666777777777777777888887 67776 5778777 6688877
Q ss_pred HHHHhcc
Q 018715 164 TLQVLNQ 170 (351)
Q Consensus 164 v~~il~~ 170 (351)
. +...+
T Consensus 504 L-a~and 509 (544)
T COG2985 504 L-AFAND 509 (544)
T ss_pred H-HHHhh
Confidence 4 44433
No 70
>PRK05326 potassium/proton antiporter; Reviewed
Probab=82.72 E-value=8 Score=39.68 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=21.1
Q ss_pred HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHH
Q 018715 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLF 116 (351)
Q Consensus 85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~l 116 (351)
+..++.++..+..|+.+|++.+.+.....+.+
T Consensus 275 l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i 306 (562)
T PRK05326 275 LAWLAQIGMFLVLGLLVTPSRLLDIALPALLL 306 (562)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566666666778888888877655444433
No 71
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=82.33 E-value=51 Score=32.09 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=52.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHH
Q 018715 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFV 126 (351)
Q Consensus 47 ~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~ 126 (351)
+++|..+...+.++++..... +.++.... --+...++.+|.-++.-=++.|+|+++|..++.+. ++....++.+
T Consensus 23 ~~l~~~vl~~~~~~~lsnlgl-i~~p~~s~----~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~-~F~~~~~g~v 96 (378)
T PF05684_consen 23 KYLPGAVLCYLLGMLLSNLGL-IDSPASSP----VYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLL-AFLIGAVGTV 96 (378)
T ss_pred hhcCHHHHHHHHHHHHHHCCC-cCCCCcch----HHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHH-HHHHHHHHHH
Confidence 467777777777777764321 11111111 11446777888888888889999999999887654 3333334445
Q ss_pred HHHHHHHHHHhh
Q 018715 127 IISAGAVHFFKQ 138 (351)
Q Consensus 127 ~~~~~~~~~l~~ 138 (351)
+.+.+.+++++.
T Consensus 97 iG~~va~~l~~~ 108 (378)
T PF05684_consen 97 IGAVVAFLLFGG 108 (378)
T ss_pred HHHHHHHHHHhh
Confidence 555566666654
No 72
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=81.50 E-value=25 Score=31.41 Aligned_cols=95 Identities=20% Similarity=0.172 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHH--hhHhhhcCChHHHHHhhHHH
Q 018715 36 CIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPI--IFNAGFQVKKKQFFRNFMTI 113 (351)
Q Consensus 36 ~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~i--lF~aGl~l~~~~l~~~~~~i 113 (351)
+...++.+.||.+-|-.-+.++.-+++-..+.... .+.+...-..|++ ...|.|- -+.--+.=+++.+||+++++
T Consensus 4 ~y~~~~~l~~r~~~~~l~P~l~a~~~ii~~L~~~~--i~y~~Y~~gg~~l-~~lLgPatVALAvPLY~~~~~l~~~~~~i 80 (215)
T PF04172_consen 4 AYLIAKWLYKRFKSPFLNPLLIAIVLIIAFLLLTG--IPYEDYMQGGDIL-SFLLGPATVALAVPLYRQRRLLKKNWIPI 80 (215)
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777776666655455444444333332222 1111122223333 2223332 23333444688999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018715 114 MLFGAVGTLISFVIISAGAV 133 (351)
Q Consensus 114 ~~la~~g~~~~~~~~~~~~~ 133 (351)
+.-...|.+.+.......++
T Consensus 81 l~~~~~g~~~~~~~~~~l~~ 100 (215)
T PF04172_consen 81 LVGVLVGSLVSIFSAVLLAR 100 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88777787766544443333
No 73
>PRK01821 hypothetical protein; Provisional
Probab=81.37 E-value=28 Score=28.54 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH-HHhhHHHhhHhhhcCCh
Q 018715 25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF-IYLLPPIIFNAGFQVKK 103 (351)
Q Consensus 25 ~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~ilF~aGl~l~~ 103 (351)
.+...+.+++.+...|+.+.+..++|-+-. ++|+++=.......... .+..+-..+.+. +..+-++=-..|.=-..
T Consensus 10 ~~l~~l~ill~~~~~Ge~i~~~l~lpiPGs--ViGmlLLf~~L~~~~vk-~~~v~~~a~~LL~~m~LfFVPa~VGim~~~ 86 (133)
T PRK01821 10 QYLRAFVLIYACLYAGIFIASLLPITIPGS--IIGMLILFVLLALQILP-AKWVKPGCSLLIRYMALLFVPIGVGVMQYY 86 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHHHhCCcC-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444455667777788888887666553322 23433322222111111 111111122222 22222222234555667
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 104 KQFFRNFMTIMLFGAVGTLISFVIISAGAVHFF 136 (351)
Q Consensus 104 ~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l 136 (351)
+.+++++.++....+++++++..+++....++.
T Consensus 87 ~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~ 119 (133)
T PRK01821 87 DLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVH 119 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988888888888777776665543
No 74
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=81.20 E-value=55 Score=31.73 Aligned_cols=135 Identities=14% Similarity=0.151 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhc-CChHHHHHh
Q 018715 31 ALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQ-VKKKQFFRN 109 (351)
Q Consensus 31 ~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~-l~~~~l~~~ 109 (351)
.+-+.....++++++...+|.....+++=..+=-.....++...+...++ .+.+..=..=++|+..|.. +|++++-+.
T Consensus 271 llA~~lf~~g~il~kf~~~P~~va~MIil~a~lk~~nlvp~~i~~GA~~l-~~F~sk~~t~~Lm~giGv~ytdl~ev~~a 349 (438)
T COG3493 271 LLACTLFMAGGILGKFIGLPGPVAFMIILVAILKAANLVPKEIEEGAKQL-SQFFSKNLTWPLMAGIGVAYTDLNEVAAA 349 (438)
T ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhCcCCHHHHHHHHHH-HHHHHHhhHHHHHHhhhhccccHHHHHHH
Confidence 34445567788888766688666333221111111111111111111111 1335555567888999996 999999887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-CHHHHHHHhhhhc---cccHHHHHHHhcccC
Q 018715 110 FMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTL-KIGDYLAIGAIFA---ATDSVCTLQVLNQDE 172 (351)
Q Consensus 110 ~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~-~~~~alllgails---aTdp~~v~~il~~~~ 172 (351)
......+....+++.+...++...+++ ++ |...|..=|.|.+ -|.-+++++--++.+
T Consensus 350 lt~~~vii~~~vVl~~i~~~~f~grl~------~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM~ 410 (438)
T COG3493 350 LTWQNVIIALSVVLGAILGGAFVGRLM------GFYPVEAAITAGLCMANMGGTGDVAVLSAADRME 410 (438)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHh------cCCchHHHHHHhHHhcCCCCCCchHHhhhcchhc
Confidence 665555555566666666665555555 44 4455555556664 355555555555554
No 75
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=81.10 E-value=57 Score=31.79 Aligned_cols=161 Identities=13% Similarity=0.126 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHH----Hh-hcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhh
Q 018715 25 SMNLFVALLCACIVIGHL----LE-ENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGF 99 (351)
Q Consensus 25 ~l~~~i~lL~~~~~~~~~----l~-~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl 99 (351)
.+...+.+++++...|+. ++ ....+|.-...+.+|+++=.+...... ++..+-.-+.+.++.+...+=.+=.
T Consensus 219 ~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~---~~v~~~~v~~ig~vsL~lflamALm 295 (404)
T COG0786 219 PLIETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKK---YRVFRRAVDVIGNVSLSLFLAMALM 295 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhcc---ccccHHHHHHHhhhHHHHHHHHHHH
Confidence 333334444444444444 44 345699998999898888765543221 1111111245778888877777777
Q ss_pred cCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH----Hhhhhccc--cHHHHHHHhcccCC
Q 018715 100 QVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA----IGAIFAAT--DSVCTLQVLNQDET 173 (351)
Q Consensus 100 ~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~all----lgailsaT--dp~~v~~il~~~~~ 173 (351)
++++-++-+.+-+.+.+-.++++.......++.+-.+ +-++..+.+ .|--+.+| .-+-..++-++.|.
T Consensus 296 SlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~m------G~~YdAaV~~~G~~G~gLGATPtAianM~av~~k~g~ 369 (404)
T COG0786 296 SLKLWELADLALPLLVILAVQTIVMALFAIFVTFRLM------GKNYDAAVLAAGHCGFGLGATPTAIANMQAVTEKFGP 369 (404)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHh------CcchhHHHHhcccccCccCCcHHHHHhhhcchhhcCC
Confidence 8888888888888777666676654333322222222 445555544 23334444 33333344455564
Q ss_pred c-h--hHHHHHHHhhhhhHHHHHHH
Q 018715 174 P-L--LYSLVFGEGVVNDATSVVLF 195 (351)
Q Consensus 174 ~-~--l~~~l~gEs~lnD~~aivlf 195 (351)
+ + +..=+.| +.+-|.+....-
T Consensus 370 S~kAf~ivPiVG-Affid~ina~ii 393 (404)
T COG0786 370 SHKAFIVVPIVG-AFFIDIINALII 393 (404)
T ss_pred CceeeEEeehHH-HHHHHHHHHHHH
Confidence 4 3 2222456 778887774433
No 76
>PRK03818 putative transporter; Validated
Probab=80.24 E-value=19 Score=36.91 Aligned_cols=104 Identities=12% Similarity=0.050 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCccccccC---hhHHHHHhhHHHhhHhhhcCChHHH---HH-hhHHHHHHHHHHHHHH
Q 018715 52 SITALIIGLCTGIVILLTTNGTSSHVLMFS---EDLFFIYLLPPIIFNAGFQVKKKQF---FR-NFMTIMLFGAVGTLIS 124 (351)
Q Consensus 52 ~~~~ll~GillG~~~~~~~~~~~~~~~~~~---~~~~~~i~L~~ilF~aGl~l~~~~l---~~-~~~~i~~la~~g~~~~ 124 (351)
..+.+++|+++|..-... .....++ +..+.+++|.+.+...|++--.+-+ ++ .+.....++...++++
T Consensus 403 ~~G~L~~gl~~g~~~~~~-----~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~ 477 (552)
T PRK03818 403 AGGPLIVALILGRIGSIG-----KLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVP 477 (552)
T ss_pred chHHHHHHHHHHhccCCC-----CceeecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 467889999999642211 1111122 2346789998888888887765443 33 3566666666666666
Q ss_pred HHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh-ccccHHHHHHHh
Q 018715 125 FVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQVL 168 (351)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~alllgail-saTdp~~v~~il 168 (351)
.++..+..++++ ++++. ...|++. +-|+|.+....-
T Consensus 478 ~~~~~~~~~~~~------~~~~~--~~~G~~aG~~t~tp~l~~a~ 514 (552)
T PRK03818 478 LLIVGILARMLA------KMNYL--TLCGMLAGSMTDPPALAFAN 514 (552)
T ss_pred HHHHHHHHHHHH------cCCHH--HHHHHHhccCCCcHHHHHHh
Confidence 655555556776 67766 5677766 446666554443
No 77
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=79.28 E-value=41 Score=32.31 Aligned_cols=153 Identities=13% Similarity=0.106 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhc-
Q 018715 22 SVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQ- 100 (351)
Q Consensus 22 ~~~~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~- 100 (351)
+...+..-..+-+....+|.+++...++|....+++.++++-.. ...+ ....+..+--.+.+..-...+++.-.|+.
T Consensus 177 ~~~~~g~Gl~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~-gllp-~~i~~~a~~~~~F~~~~lt~~ll~giGla~ 254 (347)
T TIGR00783 177 DVKLMGSGVLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAF-GLVP-KEIEEGAKMLSQFISKNLTWPLMVGVGVSY 254 (347)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh-CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 44444433444444555666665333678888888888776532 1111 11111011111245566777888888986
Q ss_pred CChHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHH-HHHhhhhc---cccHHHHHHHhcccC-Cc
Q 018715 101 VKKKQFFRNF-MTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDY-LAIGAIFA---ATDSVCTLQVLNQDE-TP 174 (351)
Q Consensus 101 l~~~~l~~~~-~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-lllgails---aTdp~~v~~il~~~~-~~ 174 (351)
+|++++-+.. .+.+.+.+.++ +...+.+.....++ ++-..++ ..=|-|.+ -|.=+++++--++.+ .|
T Consensus 255 t~l~~L~~a~t~~~vviiv~~V-lg~ii~s~lvGKll------G~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 255 IDLDDLVAALSWQFVVICLSVV-VAMILGGAFLGKLM------GMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred CCHHHHHHHhchhHhhhHHHHH-HHHHHHHHHHHHHh------CCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 8999999988 55444443333 33344444444455 5544444 44442432 233344455555554 23
Q ss_pred --hhHHHHHHH
Q 018715 175 --LLYSLVFGE 183 (351)
Q Consensus 175 --~l~~~l~gE 183 (351)
++.+.+=|.
T Consensus 328 fAQIstRiGGA 338 (347)
T TIGR00783 328 FAQISTRLGGA 338 (347)
T ss_pred HHHHHHHhhhH
Confidence 455555443
No 78
>PRK10711 hypothetical protein; Provisional
Probab=77.59 E-value=32 Score=31.04 Aligned_cols=93 Identities=10% Similarity=0.040 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHH-hhHHHhhHhhhcCChHHHHHhhH
Q 018715 33 LCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIY-LLPPIIFNAGFQVKKKQFFRNFM 111 (351)
Q Consensus 33 L~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i-~L~~ilF~aGl~l~~~~l~~~~~ 111 (351)
-+.+..+++.+.||.+.|-.-+.++.-+++-..+... + .+.+......+++..+ +-...-+..-+.=+++.+||+++
T Consensus 12 Tl~~y~~~~~l~~k~~~~~l~Pll~s~~~ii~~L~~~-~-i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~q~~~lk~~~~ 89 (231)
T PRK10711 12 TLIVFFAARKLAARFKFPLLNPLLVAMVVIIPFLLLT-G-IPYEHYFKGSEVLNDLLQPAVVALAFPLYEQLHQIRARWK 89 (231)
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHh-C-CCHHHHHhccHHHHhhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445566777777666665444443333333222222 1 1111122222333322 22223344455667899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018715 112 TIMLFGAVGTLISFVI 127 (351)
Q Consensus 112 ~i~~la~~g~~~~~~~ 127 (351)
+++.-...|.+.+...
T Consensus 90 ~I~~~~~vG~~v~i~s 105 (231)
T PRK10711 90 SIISICFIGSVVAMVT 105 (231)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888667777665433
No 79
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=74.22 E-value=22 Score=34.06 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=32.9
Q ss_pred HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHH
Q 018715 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLI 123 (351)
Q Consensus 85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~ 123 (351)
+....+..=++..|+++|++++||.+++.+.++....+.
T Consensus 281 ~~~~ll~~AmaaiGl~t~~~~l~~~G~kp~~~g~i~~~~ 319 (335)
T TIGR00698 281 LDTFLLATAMAALGLTTNVSAVKKAGVKPLFASYAGYLW 319 (335)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHcCchHHHHHHHHHHH
Confidence 567778888899999999999999999988888766543
No 80
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=74.19 E-value=71 Score=30.17 Aligned_cols=122 Identities=15% Similarity=0.089 Sum_probs=70.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH---HHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHH
Q 018715 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF---IYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLI 123 (351)
Q Consensus 47 ~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~---~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~ 123 (351)
.|+|- +.+++=+++|....-+.|+. .+.=.+....|. .-.+...+|-.|-++|.|.-.+..++-..+...=..+
T Consensus 8 ~kiPg--g~m~vPl~lga~inTf~P~~-l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~ 84 (312)
T PRK12460 8 KKIPG--GMMVVPLLIGALINTFFPQA-LEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGV 84 (312)
T ss_pred ccCCC--ceeHHHHHHHHHHHhccCcc-hhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHH
Confidence 46774 34455555665444333332 112233333442 2345566888999999998777766655544444444
Q ss_pred HHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCCch
Q 018715 124 SFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPL 175 (351)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~~~ 175 (351)
. .++++....+++.- ++--...+.+=+.++.|+...-.++..|++.++
T Consensus 85 ~-~~~g~~~~~~~g~~---g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~ 132 (312)
T PRK12460 85 A-IVIGLLVGKFFGAE---GIFGLSGLAIVAAMSNSNGGLYAALMGEFGDER 132 (312)
T ss_pred H-HHHHHHHHHHcCcc---cccchHHHHHHHHHhcCcHHHHHHHHHHcCCHh
Confidence 3 34444444445322 332334556667888999999999999999763
No 81
>COG2985 Predicted permease [General function prediction only]
Probab=73.54 E-value=25 Score=35.12 Aligned_cols=83 Identities=12% Similarity=0.187 Sum_probs=58.5
Q ss_pred HHHHhhHHHhhHhhhcCC---hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC--HHHHHHHhhhhccc
Q 018715 85 FFIYLLPPIIFNAGFQVK---KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLK--IGDYLAIGAIFAAT 159 (351)
Q Consensus 85 ~~~i~L~~ilF~aGl~l~---~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~--~~~alllgailsaT 159 (351)
-+++++.+.++..|++.- ++.+||.+++-..++++.++ +....++..+.++ +++ .....+=||.-+..
T Consensus 60 ~f~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~allivi-~~~~~a~~l~k~~------~~~~~~~~Gm~sGAlTsTP 132 (544)
T COG2985 60 HFELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIVI-AALLLAWVLHKLF------GIDLGLIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHhhc------CCCHHHhhhhhcccccCCc
Confidence 347888888999999887 55778888887777766643 3445555555554 444 44556667777777
Q ss_pred cHHHHHHHhcccCCc
Q 018715 160 DSVCTLQVLNQDETP 174 (351)
Q Consensus 160 dp~~v~~il~~~~~~ 174 (351)
.-+++..++++.+.+
T Consensus 133 ~L~aa~~~L~~lg~~ 147 (544)
T COG2985 133 GLGAAQDILRELGAP 147 (544)
T ss_pred hhHHHHHHHHhhccc
Confidence 788888889888765
No 82
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=70.47 E-value=1.1e+02 Score=29.79 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=47.2
Q ss_pred HHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHH
Q 018715 84 LFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAI 152 (351)
Q Consensus 84 ~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alll 152 (351)
-|.+++.+.+.--+=+.+|++.+-|.........+.+++.. ...+.....++ |.++...+++
T Consensus 111 nFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A-~~~g~lVG~~~------G~~~~d~~m~ 172 (438)
T COG3493 111 NFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGA-AAVGILVGLLF------GLSFQDTMMY 172 (438)
T ss_pred ChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHh------CCChHHeeee
Confidence 38899999999999999999999998888776666666544 45555556666 8888877654
No 83
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=58.33 E-value=2e+02 Score=28.59 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=11.1
Q ss_pred hhhhhHHHHHHHHHHH
Q 018715 184 GVVNDATSVVLFNAIQ 199 (351)
Q Consensus 184 s~lnD~~aivlf~~~~ 199 (351)
+.++|.+++..|..+.
T Consensus 428 tt~~D~~g~~~~~~~a 443 (449)
T TIGR00400 428 TTIADALTLIIYFNIA 443 (449)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4568888888776543
No 84
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=58.20 E-value=1.3e+02 Score=28.52 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=31.9
Q ss_pred HHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHH
Q 018715 87 IYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISF 125 (351)
Q Consensus 87 ~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~ 125 (351)
.+.+|+.-|.-|-.+|++.+.|..-+-.++++..++++.
T Consensus 200 ~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg 238 (314)
T PF03812_consen 200 PILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTG 238 (314)
T ss_pred CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHh
Confidence 567888889999999999999998888887776665543
No 85
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=57.05 E-value=5.2 Score=38.54 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=9.7
Q ss_pred hhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH-HHhhHHHhhHhhhcCChHHH---HHhhHHHHHHHHH
Q 018715 44 EENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF-IYLLPPIIFNAGFQVKKKQF---FRNFMTIMLFGAV 119 (351)
Q Consensus 44 ~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~ilF~aGl~l~~~~l---~~~~~~i~~la~~ 119 (351)
.+..+.+...+.++.|+++.. .+ ..++..+ .-+.+. .++.|......|.++|.+.+ .+.+.....+.+.
T Consensus 229 a~~~g~s~~l~af~~Gl~~~~-----~~-~~~~~~~-~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~ 301 (380)
T PF00999_consen 229 AEILGLSGILGAFIAGLILSN-----SP-FAERLEE-KLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIA 301 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccceeeeeehcccc-----cc-ccchhhh-cccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHH
Confidence 334677788888888888871 11 1111111 112244 77788888889999999888 4444444443333
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHH
Q 018715 120 GTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVC 163 (351)
Q Consensus 120 g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~ 163 (351)
..+.-....... .... +.++.++...|....+-....
T Consensus 302 ~~~~k~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~g~~~ 338 (380)
T PF00999_consen 302 ILLGKFIGVYLA-SRLF------GIPWKEALFIGLGMLPRGEVS 338 (380)
T ss_dssp ----------------------------HHHHTTTTSS--HHHH
T ss_pred HHHhhhceeehh-hhhc------ccccchhHHHHHhhcCccHHH
Confidence 333332222222 2222 778889888887666444443
No 86
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=53.25 E-value=2e+02 Score=27.10 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=31.0
Q ss_pred HHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHH
Q 018715 87 IYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISF 125 (351)
Q Consensus 87 ~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~ 125 (351)
.+..|+.-|.-|-.+|++.+.|.+-+-.++++..++++.
T Consensus 200 ~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG 238 (314)
T TIGR00793 200 QTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTG 238 (314)
T ss_pred CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHh
Confidence 566788889999999999999888777777766665553
No 87
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=52.42 E-value=2.2e+02 Score=27.26 Aligned_cols=146 Identities=17% Similarity=0.151 Sum_probs=73.1
Q ss_pred HHHHhhHHHhhHhhhcCChHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC-HHHHHHHhhhhcccc
Q 018715 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMT---IMLFGAVGTLISFVIISAGAVHFFKQMNIGTLK-IGDYLAIGAIFAATD 160 (351)
Q Consensus 85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~---i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~-~~~alllgailsaTd 160 (351)
-..+++...++--=.++|++++++..+. ....-....++.-+.....++.+++ ..| ...++++-.+.-+||
T Consensus 52 piai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm~~la~~fl~-----~~pey~~GlILlglApC~a 126 (342)
T COG0798 52 PIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLMFALAWFFLP-----DEPEYRAGLILLGLAPCIA 126 (342)
T ss_pred hHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhhhhHH
Confidence 4566676777777779998888766443 3333333333333333334444442 233 333333333333343
Q ss_pred HHHHHHHhcccCCchhHHHHHHHhhhhhHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 161 SVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHI-NLSIALKFVGSFFYLFIASTMLGVIAGLLSAFI 239 (351)
Q Consensus 161 p~~v~~il~~~~~~~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l 239 (351)
-+.+=+=+.+.+ .+.-..-..+||...+++|.....+..+.. ...++++.+.+.+..++ +=...|...++.
T Consensus 127 MVivw~~La~Gd----~~~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~----iPli~G~lTR~i 198 (342)
T COG0798 127 MVIVWSGLAKGD----RELTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLG----IPLIAGVLTRYI 198 (342)
T ss_pred HHHHHHhhccCc----HhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 333332222222 222334556899999999986665543321 12334444444444333 334445667666
Q ss_pred HHHH
Q 018715 240 IKKL 243 (351)
Q Consensus 240 ~~~~ 243 (351)
..|.
T Consensus 199 ~~k~ 202 (342)
T COG0798 199 LIKK 202 (342)
T ss_pred HHHh
Confidence 6554
No 88
>COG2855 Predicted membrane protein [Function unknown]
Probab=51.46 E-value=99 Score=29.50 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=32.5
Q ss_pred HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHH
Q 018715 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLI 123 (351)
Q Consensus 85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~ 123 (351)
...+.+..=|...|+++|.++++|.+.+.+.++....+.
T Consensus 283 lst~ll~~aMaAlGL~t~i~~l~~~G~kpl~la~~~~~~ 321 (334)
T COG2855 283 LSTFLLAMAMAALGLTTHIKALKKAGGKPLLLALLLWVF 321 (334)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHcCccHHHHHHHHHHH
Confidence 456777778899999999999999999999888766554
No 89
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=50.40 E-value=47 Score=32.20 Aligned_cols=106 Identities=12% Similarity=0.028 Sum_probs=60.7
Q ss_pred HHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccCCCCHHHHHHHhhhhccccHHHH
Q 018715 86 FIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFK-QMNIGTLKIGDYLAIGAIFAATDSVCT 164 (351)
Q Consensus 86 ~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~-~~~~~~~~~~~alllgailsaTdp~~v 164 (351)
...++-..++.-|.+.|++.+++..+.-..+++ |..-.. .+.-..++... .+ .+|...+ ..+...+...|.-.
T Consensus 115 ~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~l-G~v~q~-~i~pl~~f~~~~~~---~lP~~~~-ag~~Lvtc~~p~g~ 188 (371)
T KOG2718|consen 115 FPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLAL-GFVPQY-LIMPLLGFLLSKVL---LLPAALA-AGLLLVTCVSPGGG 188 (371)
T ss_pred cccHHHHHHHHHhcCccHHHHhhHhhCCcceee-hHHHHH-HHHHHHHHhhhhHh---hCCcccc-ceeEEEEeccCCcc
Confidence 335566778888999999999988776554432 222122 22222222221 11 2333332 56677788888887
Q ss_pred HHHhcccCCchhHHHHHHHhhhhhHHHHHHHHH
Q 018715 165 LQVLNQDETPLLYSLVFGEGVVNDATSVVLFNA 197 (351)
Q Consensus 165 ~~il~~~~~~~l~~~l~gEs~lnD~~aivlf~~ 197 (351)
...+.....+.-.++...+...+...++++.-.
T Consensus 189 ~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl 221 (371)
T KOG2718|consen 189 GNYLTSKRLPGDVTLSILMTTISTVLAVILTPL 221 (371)
T ss_pred hhhheeecCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 777765554434555566666666555555443
No 90
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=49.10 E-value=56 Score=35.03 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=48.7
Q ss_pred HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHH
Q 018715 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT 164 (351)
Q Consensus 85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v 164 (351)
..++++|.-.-..|++.|.+.+.+ +.................+...+. +. +.|+.+++.+|.+++.-.-...
T Consensus 311 ~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl-~~------k~p~~~~l~l~~lm~~kgl~el 382 (769)
T KOG1650|consen 311 VSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSL-YC------KLPLRDSLALGLLMSTKGLVEL 382 (769)
T ss_pred HHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-Hh------cCchhHHHHHHHHHHhhhHHHH
Confidence 457889999999999999999988 433333332333333333333333 34 8999999999999887766554
Q ss_pred H
Q 018715 165 L 165 (351)
Q Consensus 165 ~ 165 (351)
.
T Consensus 383 ~ 383 (769)
T KOG1650|consen 383 I 383 (769)
T ss_pred H
Confidence 3
No 91
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=45.89 E-value=2e+02 Score=24.99 Aligned_cols=30 Identities=23% Similarity=0.074 Sum_probs=22.4
Q ss_pred hHHHHHHHhhhhhHHHHHHH-HHHHHhhhhc
Q 018715 176 LYSLVFGEGVVNDATSVVLF-NAIQSFDLSH 205 (351)
Q Consensus 176 l~~~l~gEs~lnD~~aivlf-~~~~~~~~~~ 205 (351)
+...+.-.+.+-|+.+...+ ..+.+...|+
T Consensus 3 l~~lLtf~aG~iDa~~fl~~~~~F~s~~TGN 33 (209)
T PF06912_consen 3 LALLLTFIAGFIDAYSFLALGGVFVSFMTGN 33 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHhHHH
Confidence 45567778899999999988 5776665443
No 92
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=45.06 E-value=1.1e+02 Score=23.45 Aligned_cols=44 Identities=14% Similarity=0.053 Sum_probs=30.0
Q ss_pred HHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 018715 87 IYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISA 130 (351)
Q Consensus 87 ~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~ 130 (351)
+..+-++=-..|.=-..+.+++++.++....+.+++++...++.
T Consensus 50 ~m~lfFvPa~VGi~~~~~~l~~~~~~i~~~i~vsT~l~~~~tg~ 93 (96)
T PF03788_consen 50 NMALFFVPAGVGIMEYFDLLAQEGLPILVVIVVSTLLVLAVTGW 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333445666678889999999888888888777655553
No 93
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=44.96 E-value=2.7e+02 Score=26.08 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=30.6
Q ss_pred hHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHH
Q 018715 83 DLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGT 121 (351)
Q Consensus 83 ~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~ 121 (351)
+.+.+...|.-++..|..++.+..+++++........=.
T Consensus 210 ~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kl 248 (321)
T TIGR00946 210 SILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRF 248 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHH
Confidence 557899999999999999999888877776655444443
No 94
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=44.58 E-value=1.7e+02 Score=23.79 Aligned_cols=109 Identities=10% Similarity=0.062 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhH-HHHHhhHHHhhHhhhcCCh
Q 018715 25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDL-FFIYLLPPIIFNAGFQVKK 103 (351)
Q Consensus 25 ~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~-~~~i~L~~ilF~aGl~l~~ 103 (351)
.+.....++......|+.+.+-.++|-+-. ++|+++=..+.... ....++.+-..+. ..+..+-++==..|.--..
T Consensus 6 ~~~~q~~ii~~~~~~G~~i~~~l~lplPGs--IiGmvLLfllL~~~-iv~l~wv~~~a~~Ll~~m~llFVPa~VgVm~y~ 82 (128)
T COG1380 6 QILRQLAIILGFLFLGEWIASLLHLPLPGS--IIGMVLLFLLLALK-IVKLEWVERGATFLLRNMALLFVPAGVGVMNYF 82 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344455666777778888887555553322 23332211111111 0111111111111 1222211111122443357
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 104 KQFFRNFMTIMLFGAVGTLISFVIISAGAVHFF 136 (351)
Q Consensus 104 ~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l 136 (351)
+.+++++.+++.....++++....+|....+..
T Consensus 83 ~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~ 115 (128)
T COG1380 83 DLLAADGLPILVVIIISTLLVLLVTGWVVQLLI 115 (128)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999888888888888887776654
No 95
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.00 E-value=2.1e+02 Score=24.40 Aligned_cols=95 Identities=11% Similarity=0.150 Sum_probs=50.9
Q ss_pred cCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhccc--------
Q 018715 100 QVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD-------- 171 (351)
Q Consensus 100 ~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~-------- 171 (351)
++|+..-||+.+.+....+...++.++..+-.+..+|+.-+-.++-|- ++|.+++.--.+++..-+|+.
T Consensus 5 ~idk~~YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~~~~~nf~~N---llGVil~~~~~~~~l~~~k~~p~m~Ev~Y 81 (165)
T PF11286_consen 5 EIDKERYRKHLNRVIVACVASLAILSLAFSQLLIALFGGESGGNFHWN---LLGVILGLLLTSALLRQLKTHPFMTEVYY 81 (165)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeee---HHHHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 578888888887766554445444445555555555542221233333 355555554455555555432
Q ss_pred ----C-----CchhHHHHHHHhhhhhHHHHHHHHH
Q 018715 172 ----E-----TPLLYSLVFGEGVVNDATSVVLFNA 197 (351)
Q Consensus 172 ----~-----~~~l~~~l~gEs~lnD~~aivlf~~ 197 (351)
| ..|--+-+..++-=||.-|..+...
T Consensus 82 vW~LKq~ln~I~rkl~~ik~aa~~~d~~Al~iL~F 116 (165)
T PF11286_consen 82 VWQLKQLLNKIYRKLHKIKAAAEQGDPDALKILRF 116 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 1122233455666788888776553
No 96
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=39.33 E-value=2.7e+02 Score=24.62 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=30.6
Q ss_pred CCCHHHHHHHhhhhccccHHHHHHHhcccCCchhHHHHHHHhhhhhHHHHH
Q 018715 143 TLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVV 193 (351)
Q Consensus 143 ~~~~~~alllgailsaTdp~~v~~il~~~~~~~l~~~l~gEs~lnD~~aiv 193 (351)
+......-++|-..|+|......+-..+. .|+......+...+.+....+
T Consensus 20 r~Gl~ltg~~GGlvSSTA~t~~la~~~r~-~p~~~~~~~~~i~lA~~~m~~ 69 (211)
T PF13194_consen 20 RRGLLLTGLLGGLVSSTATTVSLARRSRE-NPELSRLLAAGILLASAVMFV 69 (211)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHH
Confidence 45677778899999999887765543222 334444455555555544443
No 97
>COG3329 Predicted permease [General function prediction only]
Probab=38.42 E-value=82 Score=29.68 Aligned_cols=142 Identities=17% Similarity=0.187 Sum_probs=72.0
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCC--hHHHHHhhHHHHHHHHHHHHHHHH
Q 018715 49 MNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK--KKQFFRNFMTIMLFGAVGTLISFV 126 (351)
Q Consensus 49 lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~--~~~l~~~~~~i~~la~~g~~~~~~ 126 (351)
+.+....++.|+++|.+..- .+......-++| .++-.|++.+.+-|++-. .+++||........+++.-++...
T Consensus 216 lnpal~lllggl~iGlitGe--~g~~vl~~F~~~--lFqGvL~lflL~MGm~A~rrl~elrk~g~~~v~fgllaPil~g~ 291 (372)
T COG3329 216 LNPALVLLLGGLAIGLITGE--QGESVLKPFFDP--LFQGVLCLFLLDMGMTAGRRLKELRKVGQGLVLFGLLAPILHGF 291 (372)
T ss_pred cCchHHHHHHHHHHhheecc--CchhhhhhhhHH--HHHHHHHHHHHHHhHHHHHHHHHHHhcCcceehHHHHHHHHHHH
Confidence 44556778889999864321 111111111222 566678888888888654 446666655555555444333321
Q ss_pred HHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhccc--C-Cch--hHHHHHHHhhhhhHHHHHHHHH
Q 018715 127 IISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD--E-TPL--LYSLVFGEGVVNDATSVVLFNA 197 (351)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~--~-~~~--l~~~l~gEs~lnD~~aivlf~~ 197 (351)
+++...+.- ++. .|++.....+++.+.++.|=.++-+.+|-. + +|. +..-+-----+|=.+++.+|.-
T Consensus 292 -ig~~lg~~a-~y~-tgfs~g~~vllAVlaaSaSyIa~PaalR~~iPeAnPs~yl~~Slgvtfpfni~igIPLyi~ 364 (372)
T COG3329 292 -IGLLLGMIA-GYP-TGFSDGGVVLLAVLAASASYIAVPAALRLAIPEANPSLYLGASLGVTFPFNITIGIPLYIE 364 (372)
T ss_pred -HHHHHHHHh-ccc-ccCCCcchHHHHHHhcchhhccccHHHhccCCCCCCcceeehhhccccceeeeechHHHHH
Confidence 222222211 010 155555577787777666655555666532 1 222 2222222224677777777743
No 98
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=36.03 E-value=3.5e+02 Score=25.23 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=17.1
Q ss_pred hHHHHHhhHHHhhHhhhcCChH
Q 018715 83 DLFFIYLLPPIIFNAGFQVKKK 104 (351)
Q Consensus 83 ~~~~~i~L~~ilF~aGl~l~~~ 104 (351)
+...++++|.++|.+-.+.+.+
T Consensus 40 ~~v~~i~lP~lif~~~~~~~~~ 61 (321)
T TIGR00946 40 RFVINFALPLTIFHSISTTLAD 61 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999987776554
No 99
>PRK09903 putative transporter YfdV; Provisional
Probab=31.39 E-value=4.4e+02 Score=24.60 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=21.2
Q ss_pred hHHHHHhhHHHhhHhhhcCChHHHHHh
Q 018715 83 DLFFIYLLPPIIFNAGFQVKKKQFFRN 109 (351)
Q Consensus 83 ~~~~~i~L~~ilF~aGl~l~~~~l~~~ 109 (351)
+.+.+...|.-|+..|..++.+.++++
T Consensus 201 ~~lg~~~~PlaL~~iG~~L~~~~~~~~ 227 (314)
T PRK09903 201 NLIAKANSGVAVFAAGLTLAAHKFEFS 227 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 457788999999999998876665544
No 100
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=30.72 E-value=5.4e+02 Score=25.45 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=47.9
Q ss_pred HHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHH
Q 018715 84 LFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAI 152 (351)
Q Consensus 84 ~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alll 152 (351)
-|.+++...++--+=+.+|++.++|...+.+-..+.+++...... .....++ |.++.++++.
T Consensus 94 ~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g-~lvG~l~------G~~~~~~i~~ 155 (414)
T PF03390_consen 94 NFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLG-GLVGMLF------GYSFKDAIFY 155 (414)
T ss_pred ChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh------CCCHHHHHHH
Confidence 378888888888888999999999999888777777776654444 4445555 8899888775
No 101
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=29.50 E-value=5e+02 Score=24.73 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=44.6
Q ss_pred HHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHH
Q 018715 84 LFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVC 163 (351)
Q Consensus 84 ~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~ 163 (351)
.+.-+.+.-|=|.+|.++..+.+.....+...--..+ +++....|.++.+++ +++...+..+++--.+.|.+.
T Consensus 28 ~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg-----~liPl~~~~iLr~~~--~l~~~daaAiAAhYGSVSavT 100 (327)
T PF05982_consen 28 FLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLG-----ILIPLIAFPILRRLG--KLDRADAAAIAAHYGSVSAVT 100 (327)
T ss_pred HHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcc--CCChhhHHHHHHHcCchHHHH
Confidence 3444555556667777777666655444333322333 344445566654433 567666666655554444433
Q ss_pred ---HHHHhcccCCc
Q 018715 164 ---TLQVLNQDETP 174 (351)
Q Consensus 164 ---v~~il~~~~~~ 174 (351)
..+.+++.+.+
T Consensus 101 F~~a~~~L~~~gi~ 114 (327)
T PF05982_consen 101 FAAALAFLESQGIS 114 (327)
T ss_pred HHHHHHHHHHCCCC
Confidence 34556666654
No 102
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=28.56 E-value=1.5e+02 Score=27.91 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=67.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH--HHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHH
Q 018715 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF--IYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLIS 124 (351)
Q Consensus 47 ~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~--~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~ 124 (351)
.|+|- +.+++=+++|....-+.|+.....=.+...++. .-.+...+|-.|-++|.|.-.+..++-..+...=..+.
T Consensus 8 ~kIPG--G~MiVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~ 85 (314)
T TIGR00793 8 EKIPG--GMMLVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVA 85 (314)
T ss_pred ccCCC--ceeHHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhcceeeeHHHHHH
Confidence 46774 344444555554443333221111123333332 22345567888999999887666555444433333333
Q ss_pred HHHHHHHHHHHHhhcccC-C-CCHHHHHHHhhhhccccHHHHHHHhcccCCch
Q 018715 125 FVIISAGAVHFFKQMNIG-T-LKIGDYLAIGAIFAATDSVCTLQVLNQDETPL 175 (351)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~-~-~~~~~alllgailsaTdp~~v~~il~~~~~~~ 175 (351)
.++++....+++.-|++ + +--...+.+=+.++.|+...-.++..|++.++
T Consensus 86 -~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~ 137 (314)
T TIGR00793 86 -WVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKE 137 (314)
T ss_pred -HHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHh
Confidence 34444444455422210 0 21234455667888899999999999999763
No 103
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=27.90 E-value=62 Score=30.52 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=25.6
Q ss_pred HHHHhhHHHhhHhhhcCChHHHHHhhHHHHH
Q 018715 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIML 115 (351)
Q Consensus 85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~ 115 (351)
+....+..=+...|+++|++++|+.+++.+.
T Consensus 273 ~s~~~~~~A~aaiGl~~~~~~l~~~G~kpl~ 303 (305)
T PF03601_consen 273 LSKWLFALAMAAIGLSTNFKDLKQVGWKPLL 303 (305)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHhcCcccee
Confidence 5677777778999999999999998876554
No 104
>PRK01844 hypothetical protein; Provisional
Probab=26.02 E-value=2.6e+02 Score=20.30 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 018715 223 IASTMLGVIAGLLSAF 238 (351)
Q Consensus 223 ~~~~~~G~~~G~~~~~ 238 (351)
+.++++|.+.|++.+.
T Consensus 11 I~~li~G~~~Gff~ar 26 (72)
T PRK01844 11 VVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666665544
No 105
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=25.23 E-value=4.2e+02 Score=22.41 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=14.4
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 018715 50 NESITALIIGLCTGIVIL 67 (351)
Q Consensus 50 P~~~~~ll~GillG~~~~ 67 (351)
++.++.++.|+++||...
T Consensus 33 ~~~i~~vlaavllGP~~g 50 (160)
T TIGR02359 33 VQHFVNVIAGVLLGPWYA 50 (160)
T ss_pred hhHHHHHHHHHHHchHHH
Confidence 366788999999999654
No 106
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=23.62 E-value=7.4e+02 Score=24.65 Aligned_cols=39 Identities=26% Similarity=0.396 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHH
Q 018715 27 NLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVIL 67 (351)
Q Consensus 27 ~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~ 67 (351)
.+|+.+-+++.++-+.+++ ++++ ++=|+++|+.+-.+..
T Consensus 302 iLFI~LTF~~fflfE~~~~-~~iH-piQY~LVGlAl~lFYl 340 (430)
T PF06123_consen 302 ILFIGLTFLAFFLFELLSK-LRIH-PIQYLLVGLALVLFYL 340 (430)
T ss_pred HHHHHHHHHHHHHHHHHhc-Cccc-HHHHHHHHHHHHHHHH
Confidence 5666677777777777775 5564 4679999998876554
No 107
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=23.51 E-value=4.6e+02 Score=22.28 Aligned_cols=19 Identities=21% Similarity=0.053 Sum_probs=14.8
Q ss_pred hccccHHHHHHHhcccCCc
Q 018715 156 FAATDSVCTLQVLNQDETP 174 (351)
Q Consensus 156 lsaTdp~~v~~il~~~~~~ 174 (351)
...|+|.-....+++.|.|
T Consensus 111 ~~TT~~~~l~~~l~~l~~P 129 (198)
T TIGR02454 111 ALTTPFPELLSALRRLGVP 129 (198)
T ss_pred HHcCCHHHHHHHHHHcCCC
Confidence 4568888888888888877
No 108
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=23.30 E-value=1.5e+02 Score=19.66 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=10.1
Q ss_pred hHHHHHhhHHHHHHHHH
Q 018715 103 KKQFFRNFMTIMLFGAV 119 (351)
Q Consensus 103 ~~~l~~~~~~i~~la~~ 119 (351)
+++++||+.....+.++
T Consensus 9 ~~~f~~nk~a~~gl~il 25 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIIL 25 (56)
T ss_pred HHHHHhCchHHHHHHHH
Confidence 56777777655544433
No 109
>COG0306 PitA Phosphate/sulphate permeases [Inorganic ion transport and metabolism]
Probab=23.28 E-value=5.7e+02 Score=24.39 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCc----hhHHHHHHHHHHHHHH
Q 018715 212 LKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMG-RHSTD----REVALMILMAYLSYML 267 (351)
Q Consensus 212 ~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~-~~~~~----~~~~l~l~~~~~~~~~ 267 (351)
++.+.+.+...+.+.++|..++++..+.+|+...+ +.... .+....+..++.+|..
T Consensus 129 ~~~~~~Iv~swvlsPii~~~ia~~l~~~~~~~~~~~~~~~~~~~~~r~l~i~sa~~~aF~h 189 (326)
T COG0306 129 WGVLGKIVASWVLSPILGGVLAYLLYSLLRRLIVGKDGKRKVERIFRILLIISASLVAFAH 189 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhc
Confidence 34455666667778888998998888888877432 12222 2334455555555543
No 110
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=22.37 E-value=2.1e+02 Score=25.87 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHH
Q 018715 217 SFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILT 278 (351)
Q Consensus 217 ~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgila 278 (351)
++..++++|..+|..++............+++.......+....+...|.+=..+|.+..=+
T Consensus 131 HfpsDVlaG~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~y~~~~~~gvd~~ws 192 (235)
T cd03381 131 HFPHQVIAGVISGIAVAETFSHIRYIYSASLKRYVLITFFLFGFALGFYLLLKWLGVDLLWS 192 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 44556777888887777665543211110111111223444556777777777788777443
No 111
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.63 E-value=84 Score=25.47 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018715 223 IASTMLGVIAGLLSAFIIK 241 (351)
Q Consensus 223 ~~~~~~G~~~G~~~~~l~~ 241 (351)
+.++++|+++|+++.++..
T Consensus 3 ~i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4456666666666655544
No 112
>PRK09903 putative transporter YfdV; Provisional
Probab=21.45 E-value=6.7e+02 Score=23.34 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=27.9
Q ss_pred hHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHH
Q 018715 83 DLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLIS 124 (351)
Q Consensus 83 ~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~ 124 (351)
+...++++|.++|.+-.+.|.++...+.+ ............
T Consensus 38 ~lv~~v~lPalif~s~~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (314)
T PRK09903 38 KLVLNYALPAALFVSITRANREMIFADTR-LTLVSLVVIVGC 78 (314)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHhhhh-HHHHHHHHHHHH
Confidence 56889999999999999988777654443 233344444433
No 113
>PF06610 DUF1144: Protein of unknown function (DUF1144); InterPro: IPR010574 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.17 E-value=4e+02 Score=21.98 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=36.2
Q ss_pred HhhhhhHHHHHHHHH--HHHhh-hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 183 EGVVNDATSVVLFNA--IQSFD-LSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKL 243 (351)
Q Consensus 183 Es~lnD~~aivlf~~--~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~ 243 (351)
...+-|.+|.+.|.. -..+. ..+.+ ..+++.......+.+...|...|+.+.+.-|..
T Consensus 80 ~~~l~D~lAyvsFQsPVYaaIL~~vGA~---~~qivtav~snavvs~~mG~~YG~FLd~cRrlF 140 (143)
T PF06610_consen 80 SKNLADLLAYVSFQSPVYAAILWFVGAD---GDQIVTAVSSNAVVSMVMGRPYGYFLDYCRRLF 140 (143)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345778999988762 11121 11222 233455556677888889999998888776654
No 114
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.12 E-value=3.4e+02 Score=21.03 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhhcccC--ChhHHHHHHHHHHHH
Q 018715 31 ALLCACIVIGHLLEENRWM--NESITALIIGLCTGI 64 (351)
Q Consensus 31 ~lL~~~~~~~~~l~~~~~l--P~~~~~ll~GillG~ 64 (351)
.-++++..+|.++.++..- .-.+..+++|+.+|.
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 4556788899999875432 234444555666654
No 115
>PF15179 Myc_target_1: Myc target protein 1
Probab=20.85 E-value=2e+02 Score=24.91 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 219 FYLFIASTMLGVIAGLLSAFIIKKL 243 (351)
Q Consensus 219 l~~~~~~~~~G~~~G~~~~~l~~~~ 243 (351)
+..+-.+.++|+++|.++..++.++
T Consensus 22 IlaF~vSm~iGLviG~li~~Lltwl 46 (197)
T PF15179_consen 22 ILAFCVSMAIGLVIGALIWALLTWL 46 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666665555555
No 116
>PRK00523 hypothetical protein; Provisional
Probab=20.69 E-value=3.4e+02 Score=19.71 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 018715 223 IASTMLGVIAGLLSAF 238 (351)
Q Consensus 223 ~~~~~~G~~~G~~~~~ 238 (351)
+.++++|.+.|++.+.
T Consensus 12 i~~li~G~~~Gffiar 27 (72)
T PRK00523 12 IPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666666665544
No 117
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.28 E-value=2.2e+02 Score=22.50 Aligned_cols=36 Identities=28% Similarity=0.212 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHH
Q 018715 29 FVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVI 66 (351)
Q Consensus 29 ~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~ 66 (351)
|+.-+++++.+|+++.|..+- ...-++++.++|..+
T Consensus 52 fIsGilVGa~iG~llD~~agT--sPwglIv~lllGf~A 87 (116)
T COG5336 52 FISGILVGAGIGWLLDKFAGT--SPWGLIVFLLLGFGA 87 (116)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH
Confidence 455566788889998864332 223334444444433
No 118
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.18 E-value=2.8e+02 Score=19.65 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 018715 224 ASTMLGVIAGLLSAF 238 (351)
Q Consensus 224 ~~~~~G~~~G~~~~~ 238 (351)
.++++|.+.|+..+.
T Consensus 5 lali~G~~~Gff~ar 19 (64)
T PF03672_consen 5 LALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556666655543
Done!