Query 018715
Match_columns 351
No_of_seqs 197 out of 1394
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:56:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.1 2.3E-09 7.9E-14 102.0 15.0 207 83-327 61-278 (388)
2 2l0e_A Sodium/hydrogen exchang 98.3 6E-08 2E-12 58.4 -1.0 31 145-175 2-32 (33)
3 2htg_A NHE-1, NHE1 isoform of 97.7 1.5E-06 5.1E-11 49.8 -2.0 22 175-196 5-26 (28)
4 2k3c_A TMIX peptide; membrane 97.3 1.7E-06 5.9E-11 52.1 -6.1 31 260-290 2-32 (33)
5 3zux_A Transporter, ASBTNM; tr 95.4 1.6 5.5E-05 40.3 21.6 141 85-240 44-189 (332)
6 1y4e_A Sodium/hydrogen exchang 93.8 0.0059 2E-07 34.5 -1.0 25 80-104 2-26 (27)
7 2zy9_A Mg2+ transporter MGTE; 32.9 1.9E+02 0.0064 27.5 9.4 16 184-199 451-466 (473)
8 2q67_A Potassium channel prote 22.3 2E+02 0.007 21.3 6.1 26 126-156 35-60 (114)
9 3vou_A ION transport 2 domain 16.3 2.8E+02 0.0096 21.4 5.9 14 143-156 50-63 (148)
10 2l35_A DAP12-NKG2C_TM; immunor 15.1 1.4E+02 0.0046 20.1 2.9 31 254-285 17-47 (63)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.06 E-value=2.3e-09 Score=101.95 Aligned_cols=207 Identities=12% Similarity=0.106 Sum_probs=141.4
Q ss_pred hHHHHHhhHHHhhHhhhcCChHHH----HHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh
Q 018715 83 DLFFIYLLPPIIFNAGFQVKKKQF----FRNFM--TIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF 156 (351)
Q Consensus 83 ~~~~~i~L~~ilF~aGl~l~~~~l----~~~~~--~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgail 156 (351)
++.-+-.+.+.+|..|+|+|++.+ |+.++ .....+..|++.++.+ |+.+ +.+...+.--+++.
T Consensus 61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~------~~~~~~~~~gw~ip 129 (388)
T 1zcd_A 61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF------NYADPITREGWAIP 129 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG------CCSSTTHHHHTSSS
T ss_pred HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH------hcCChhhhhhhHHH
Confidence 456788899999999999998876 44444 3467788888888644 4444 56666677888999
Q ss_pred ccccHHHHHHHhcccC--Cc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 157 AATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAG 233 (351)
Q Consensus 157 saTdp~~v~~il~~~~--~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G 233 (351)
++||.+..+.++...+ .| ..+..+.+.+.+||..++++..++.+ ++.+ ...... . .. .
T Consensus 130 ~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~---~~~l~~---------~-~~---~ 190 (388)
T 1zcd_A 130 AATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLS---MASLGV---------A-AV---A 190 (388)
T ss_dssp SCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCC---HHHHHH---------H-HH---H
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcc---HHHHHH---------H-HH---H
Confidence 9999999999998765 45 48899999999999999999888743 2222 111110 0 01 1
Q ss_pred HHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHH-HH
Q 018715 234 LLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLS-FV 312 (351)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~-~l 312 (351)
....+..+|. +.+.......+ ....++.++..|.++.+|.+++|+++...++++.+ ..++.++..+... ++
T Consensus 191 ~~~~~~l~r~----~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~--~~~~le~~l~p~v~~~ 262 (388)
T 1zcd_A 191 IAVLAVLNLC----GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRS--PAKRLEHVLHPWVAYL 262 (388)
T ss_dssp HHHHHHHHHT----TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSC--HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh----cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCC--HHHHHHHHHHHHHHHH
Confidence 1112333333 11222222322 34667777999999999999999999975432222 2345556666655 58
Q ss_pred HHHHH-HHHhhhhhcc
Q 018715 313 AEIFI-FLYVGMDALD 327 (351)
Q Consensus 313 ~~~~~-Fv~iG~~i~~ 327 (351)
+-++| |...|.+++.
T Consensus 263 ilPlFaFanaGv~l~~ 278 (388)
T 1zcd_A 263 ILPLFAFANAGVSLQG 278 (388)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHhcCeeecc
Confidence 89999 9999999954
No 2
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=98.27 E-value=6e-08 Score=58.39 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=27.8
Q ss_pred CHHHHHHHhhhhccccHHHHHHHhcccCCch
Q 018715 145 KIGDYLAIGAIFAATDSVCTLQVLNQDETPL 175 (351)
Q Consensus 145 ~~~~alllgailsaTdp~~v~~il~~~~~~~ 175 (351)
+|..++++||++|+|||+++.+++|+.+.|+
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~ 32 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK 32 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence 4567899999999999999999999998775
No 3
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=97.72 E-value=1.5e-06 Score=49.77 Aligned_cols=22 Identities=59% Similarity=0.934 Sum_probs=20.5
Q ss_pred hhHHHHHHHhhhhhHHHHHHHH
Q 018715 175 LLYSLVFGEGVVNDATSVVLFN 196 (351)
Q Consensus 175 ~l~~~l~gEs~lnD~~aivlf~ 196 (351)
+++.+++|||++||++++++|.
T Consensus 5 ~L~~lvfGESllNDavaiVlf~ 26 (28)
T 2htg_A 5 LLHILVFGESLLNDAVTVVLYK 26 (28)
T ss_dssp TTHHHHTTTTTTTTTTTTTTTT
T ss_pred eEEEEEEeeeeecccEEEEEEe
Confidence 6999999999999999999875
No 4
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=97.26 E-value=1.7e-06 Score=52.13 Aligned_cols=31 Identities=42% Similarity=0.748 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHhhhccc
Q 018715 260 MAYLSYMLAELFYLSGILTVFFCGIVMSHYT 290 (351)
Q Consensus 260 ~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~ 290 (351)
.+|.+|..||.+|+||++|+++||+.++++.
T Consensus 2 ~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y~ 32 (33)
T 2k3c_A 2 KSYMAYLSAELFHLSGIMALIASGVVMRPKK 32 (33)
T ss_dssp CCSTTTGGGSSSTTTTTTTTTTTTSCCCCCC
T ss_pred hhHHHHHHHHHhCcChHHHHHHHHHHHhhcc
Confidence 3678899999999999999999999999764
No 5
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=95.43 E-value=1.6 Score=40.26 Aligned_cols=141 Identities=19% Similarity=0.226 Sum_probs=65.4
Q ss_pred HHHHhhHHHhhHhhhcCChHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC--HHHHHHHhhhhccc
Q 018715 85 FFIYLLPPIIFNAGFQVKKKQFFR---NFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLK--IGDYLAIGAIFAAT 159 (351)
Q Consensus 85 ~~~i~L~~ilF~aGl~l~~~~l~~---~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~--~~~alllgailsaT 159 (351)
.....+..++|..|.++|.+++++ +++.... +......+.-..++.+...+ +.+ ...++++-++.-++
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~----~l~~~~vi~Pll~~~l~~~~---~l~~~~~~Glil~~~~P~~ 116 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVII----GVIAQFAIMPATAWCLSKLL---NLPAEIAVGVILVGCCPGG 116 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHH----HHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHH----HHHHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHhcCCch
Confidence 456788999999999999999984 4444332 22222222222222221111 233 23333333333333
Q ss_pred cHHHHHHHhcccCCchhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 160 DSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFI 239 (351)
Q Consensus 160 dp~~v~~il~~~~~~~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l 239 (351)
+...+..-+-+ +... .-.....+|+..+++..-....+..++..+.+..+...+.+..++. =.+.|.+..++
T Consensus 117 ~~s~v~t~~a~-Gd~~---la~~~~~~stll~~~~~Pl~~~l~~g~~~~v~~~~~~~~l~~~vll----P~~lG~l~r~~ 188 (332)
T 3zux_A 117 TASNVMTYLAR-GNVA---LSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLL----PIVLGLIVHKV 188 (332)
T ss_dssp THHHHHHHHTT-CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTHH----HHHHHHHHHHH
T ss_pred hHHHHHHHHhC-CCHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 33332222212 2222 2233556677777776665554443332233333344443333333 34444555444
Q ss_pred H
Q 018715 240 I 240 (351)
Q Consensus 240 ~ 240 (351)
.
T Consensus 189 ~ 189 (332)
T 3zux_A 189 L 189 (332)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=93.85 E-value=0.0059 Score=34.47 Aligned_cols=25 Identities=44% Similarity=1.059 Sum_probs=21.5
Q ss_pred cChhHHHHHhhHHHhhHhhhcCChH
Q 018715 80 FSEDLFFIYLLPPIIFNAGFQVKKK 104 (351)
Q Consensus 80 ~~~~~~~~i~L~~ilF~aGl~l~~~ 104 (351)
++++.|+...||+|+|++|+.++.|
T Consensus 2 ~~~~~FF~~LLPPII~~aGy~l~~r 26 (27)
T 1y4e_A 2 LQSDVFFLFLLPPIILDAGYFLPLR 26 (27)
T ss_dssp CCSCSSHHHHSCCSSHHHHTTGGGG
T ss_pred CccceeeeeccCccEeeccccccCC
Confidence 4677899999999999999998654
No 7
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=32.90 E-value=1.9e+02 Score=27.53 Aligned_cols=16 Identities=13% Similarity=0.488 Sum_probs=11.7
Q ss_pred hhhhhHHHHHHHHHHH
Q 018715 184 GVVNDATSVVLFNAIQ 199 (351)
Q Consensus 184 s~lnD~~aivlf~~~~ 199 (351)
+.++|.+++..|..+.
T Consensus 451 tt~~D~~g~~~~~~~a 466 (473)
T 2zy9_A 451 ATLSDVTGLLIYLSVA 466 (473)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4579999998876543
No 8
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=22.27 E-value=2e+02 Score=21.31 Aligned_cols=26 Identities=15% Similarity=0.018 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhcccCCCCHHHHHHHhhhh
Q 018715 126 VIISAGAVHFFKQMNIGTLKIGDYLAIGAIF 156 (351)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~alllgail 156 (351)
...+...+...+ ++++.+|+-++.+-
T Consensus 35 ~~~g~~~~~~~e-----~~~~~~a~y~~~~T 60 (114)
T 2q67_A 35 LISGTIFYSTVE-----GLRPIDALYFSVVT 60 (114)
T ss_dssp HHHHHHHHHHHS-----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CCCHHHHHHHHHHH
Confidence 344444444442 78999998886543
No 9
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=16.26 E-value=2.8e+02 Score=21.43 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=11.1
Q ss_pred CCCHHHHHHHhhhh
Q 018715 143 TLKIGDYLAIGAIF 156 (351)
Q Consensus 143 ~~~~~~alllgail 156 (351)
++++..|+-+..+.
T Consensus 50 ~~~~~~a~y~~~~t 63 (148)
T 3vou_A 50 GLRPLDALYFSVVT 63 (148)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 88999998886553
No 10
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=15.09 E-value=1.4e+02 Score=20.12 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHh
Q 018715 254 VALMILMAYLSYMLAELFYLSGILTVFFCGIV 285 (351)
Q Consensus 254 ~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~ 285 (351)
...++.++...|+.|.. +..|+++....+++
T Consensus 17 Ii~TllLal~VY~~A~~-~~a~~lgi~c~~l~ 47 (63)
T 2l35_A 17 LVLTVLIALAVYFLGRL-GTAEVLGIISIVLV 47 (63)
T ss_dssp HHHHHHHHHHHHHHCCS-SSCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccc-chhhhhhhhhHHHH
Confidence 45677788888888875 66667776666654
Done!