Query 018715
Match_columns 351
No_of_seqs 197 out of 1394
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 04:57:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018715.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018715hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 71.4 7.9 0.00057 30.1 8.1 24 47-70 9-32 (173)
2 d2nwwa1 f.49.1.1 (A:12-416) Pr 20.2 1.3E+02 0.0094 25.7 7.7 75 50-124 3-85 (405)
3 d2e74e1 f.23.24.1 (E:1-32) Pet 12.2 1E+02 0.0073 15.7 4.1 19 218-236 6-24 (32)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 7.4 82 0.006 15.6 1.1 17 275-291 4-20 (27)
5 d1r3jc_ f.14.1.1 (C:) Potassiu 4.8 4.4E+02 0.032 17.0 5.2 27 217-243 71-97 (103)
6 d1u7ga_ f.44.1.1 (A:) Ammonium 4.7 8.2E+02 0.06 20.1 9.0 17 272-288 317-333 (383)
7 d1q90r_ f.23.12.1 (R:) ISP sub 3.9 3.6E+02 0.026 14.7 4.4 24 107-130 9-32 (39)
8 d2fj6a1 a.60.15.1 (A:1-74) Hyp 3.4 1.4E+02 0.0099 19.2 0.4 15 4-18 42-56 (74)
9 d2nr9a1 f.51.1.1 (A:4-192) Glp 3.2 4.2E+02 0.03 19.2 3.5 18 224-241 168-185 (189)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 3.2 2.7E+02 0.02 14.8 1.5 11 277-287 22-32 (37)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=71.37 E-value=7.9 Score=30.07 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=16.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHhhc
Q 018715 47 RWMNESITALIIGLCTGIVILLTT 70 (351)
Q Consensus 47 ~~lP~~~~~ll~GillG~~~~~~~ 70 (351)
+|+|-....++.|.+.+.+...+.
T Consensus 9 ~RlpWL~i~l~~~~~~a~ii~~Fe 32 (173)
T d2yvxa3 9 ARVRWLVILILTGMVTSSILQGFE 32 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777776665543
No 2
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.16 E-value=1.3e+02 Score=25.68 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=35.5
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCC-CccccccChhHHH---HHhhHHHhhH-h--hh-cCChHHHHHhhHHHHHHHHHHH
Q 018715 50 NESITALIIGLCTGIVILLTTNGT-SSHVLMFSEDLFF---IYLLPPIIFN-A--GF-QVKKKQFFRNFMTIMLFGAVGT 121 (351)
Q Consensus 50 P~~~~~ll~GillG~~~~~~~~~~-~~~~~~~~~~~~~---~i~L~~ilF~-a--Gl-~l~~~~l~~~~~~i~~la~~g~ 121 (351)
++...-+..|+++|.......+.. .....+.-.|.|. +..++|++|. . |. +++.++.+|...+....-...+
T Consensus 3 ~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt 82 (405)
T d2nwwa1 3 QKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTS 82 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHH
Confidence 345667788888886543221100 0011222224433 3344444443 2 33 4554556666666555544444
Q ss_pred HHH
Q 018715 122 LIS 124 (351)
Q Consensus 122 ~~~ 124 (351)
.++
T Consensus 83 ~iA 85 (405)
T d2nwwa1 83 AFA 85 (405)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 3
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.20 E-value=1e+02 Score=15.70 Aligned_cols=19 Identities=21% Similarity=0.698 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018715 218 FFYLFIASTMLGVIAGLLS 236 (351)
Q Consensus 218 ~l~~~~~~~~~G~~~G~~~ 236 (351)
..+........|+.+|.+.
T Consensus 6 vfyivfialffgiavgiif 24 (32)
T d2e74e1 6 VFYIVFIALFFGIAVGIIF 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHhhhee
Confidence 3444455556666666554
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.39 E-value=82 Score=15.60 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=11.0
Q ss_pred hHHHHHHHHHhhhcccc
Q 018715 275 GILTVFFCGIVMSHYTW 291 (351)
Q Consensus 275 gilav~~~Gl~l~~~~~ 291 (351)
|++-+..+|++.+.+..
T Consensus 4 gli~~tl~glf~aayqq 20 (27)
T d2e74g1 4 GLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHH
Confidence 45566677887776543
No 5
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=4.78 E-value=4.4e+02 Score=16.97 Aligned_cols=27 Identities=11% Similarity=0.343 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715 217 SFFYLFIASTMLGVIAGLLSAFIIKKL 243 (351)
Q Consensus 217 ~~l~~~~~~~~~G~~~G~~~~~l~~~~ 243 (351)
..+..+.|-..++...+.+..+..++.
T Consensus 71 ~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 97 (103)
T d1r3jc_ 71 AVVVMVAGITSFGLVTAALATWFVGRE 97 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777777776654
No 6
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=4.72 E-value=8.2e+02 Score=20.07 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=13.4
Q ss_pred ccchHHHHHHHHHhhhc
Q 018715 272 YLSGILTVFFCGIVMSH 288 (351)
Q Consensus 272 g~Sgilav~~~Gl~l~~ 288 (351)
+..|+.+...+|++-+.
T Consensus 317 g~~Gi~G~l~~glfa~~ 333 (383)
T d1u7ga_ 317 GVCGIVGCIMTGIFAAS 333 (383)
T ss_dssp HHHHHHHHHHHHHHTSG
T ss_pred hhhHHHHHHHHHHhcCc
Confidence 45789999999988653
No 7
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.95 E-value=3.6e+02 Score=14.74 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=12.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Q 018715 107 FRNFMTIMLFGAVGTLISFVIISA 130 (351)
Q Consensus 107 ~~~~~~i~~la~~g~~~~~~~~~~ 130 (351)
||+....++++.........+...
T Consensus 9 rR~~MNLll~G~~~~~~~g~l~py 32 (39)
T d1q90r_ 9 KRNIMNLILAGGAGLPITTLALGY 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhhhhccce
Confidence 555556666655444443344433
No 8
>d2fj6a1 a.60.15.1 (A:1-74) Hypothetical protein YozE {Bacillus subtilis [TaxId: 1423]}
Probab=3.37 E-value=1.4e+02 Score=19.19 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=11.3
Q ss_pred cchhhHHHhhhhccc
Q 018715 4 ELSNLMERSLSMLSS 18 (351)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (351)
|+|+-+|.|++++.+
T Consensus 42 eiS~YLE~n~~~l~s 56 (74)
T d2fj6a1 42 EISSYLELNADYLHT 56 (74)
T ss_dssp HHHHHHHTSHHHHTT
T ss_pred HHHHHHHHcccccch
Confidence 678888888877643
No 9
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=3.24 E-value=4.2e+02 Score=19.17 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018715 224 ASTMLGVIAGLLSAFIIK 241 (351)
Q Consensus 224 ~~~~~G~~~G~~~~~l~~ 241 (351)
+|.+.|...|++..+..|
T Consensus 168 ~G~l~G~~~g~~~~~~~k 185 (189)
T d2nr9a1 168 SGLIVGLIWGFIDSKLRK 185 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccc
Confidence 455556655555544333
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.23 E-value=2.7e+02 Score=14.80 Aligned_cols=11 Identities=18% Similarity=0.464 Sum_probs=4.6
Q ss_pred HHHHHHHHhhh
Q 018715 277 LTVFFCGIVMS 287 (351)
Q Consensus 277 lav~~~Gl~l~ 287 (351)
+-+++.|+.++
T Consensus 22 Llifvl~vLFs 32 (37)
T d2axtl1 22 LLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
Done!