RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 018715
         (351 letters)



>d2axtc1 f.55.1.1 (C:27-473) Photosystem II CP43 protein PsbC
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 447

 Score = 26.7 bits (59), Expect = 5.4
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 9/35 (25%)

Query: 261 AYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVT 295
           AYLSY L           +   G + + + W N T
Sbjct: 244 AYLSYSLG---------ALSMMGFIATCFVWFNNT 269


>d1uynx_ f.4.5.1 (X:) Translocator domain of NalP {Neisseria
           meningitidis [TaxId: 487]}
          Length = 299

 Score = 26.3 bits (57), Expect = 6.2
 Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 6/90 (6%)

Query: 220 YLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTV 279
                +T             + +     +S + +   + L A + +   ++ YL G+ + 
Sbjct: 67  AKTGENTTAAA------TLGMGRSTWSENSANAKTDSISLFAGIRHDAGDIGYLKGLFSY 120

Query: 280 FFCGIVMSHYTWHNVTESSRVTTKHAFATL 309
                 +S  T  +      V         
Sbjct: 121 GRYKNSISRSTGADEHAEGSVNGTLMQLGA 150


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,230,987
Number of extensions: 54160
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 19
Length of query: 351
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 265
Effective length of database: 1,226,816
Effective search space: 325106240
Effective search space used: 325106240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.7 bits)