BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018716
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 107 HEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLS----AETIRCTTVPNVL 162
HE++ F K VL+L CG+G I+A GA V DLS E R TT P V+
Sbjct: 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSP-VV 92
Query: 163 ANLEQARERQSRQPES 178
++A E + +P++
Sbjct: 93 CYEQKAIEDIAIEPDA 108
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 62 AISMFKGKVSVADIIGFTGSEMISSK---------PDGFLKCWESSIDLVNVLKHEIRDG 112
+++ K VS DI F G E I + P+ F + +S VN+ +R
Sbjct: 232 SVNRSKSDVSYGDIERFWGKEFIRERLDDVDYLIHPNSFFQT--NSYQAVNL----VRKV 285
Query: 113 QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHF--QDLSAETIRCTT-VPNVLANLEQAR 169
G+++L++ G G GI+ +G F + + E R + NV A E A
Sbjct: 286 SELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVAS 345
Query: 170 ERQ 172
+R+
Sbjct: 346 DRE 348
>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 62 AISMFKGKVSVADIIGFTGSEMISSK---------PDGFLKCWESSIDLVNVLKHEIRDG 112
+++ K VS DI F G E I + P+ F + +S VN+ +R
Sbjct: 232 SVNRSKSDVSYGDIERFWGKEFIRERLDDVDYLIHPNSFFQT--NSYQAVNL----VRKV 285
Query: 113 QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHF--QDLSAETIRCTT-VPNVLANLEQAR 169
G+++L++ G G GI+ +G F + + E R + NV A E A
Sbjct: 286 SELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVAS 345
Query: 170 ERQ 172
+R+
Sbjct: 346 DRE 348
>pdb|1R5A|A Chain A, Glutathione S-Transferase
Length = 218
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 24 MSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDLQAISMFKGKVSVADIIGFTGSEM 83
M++ + A PC +V +L K G +DL+ +++ +G+ D +
Sbjct: 1 MTTVLYYLPASPPCRSVLLLA-------KMIGVELDLKVLNIMEGEQLKPDFVELNPQHC 53
Query: 84 ISSKPDGFLKCWESSIDLVNVLKHEIRDGQL---SFRGKRVLELSCGYGLPGIF 134
I + D L WES + L ++ +D L FR + +++ + L ++
Sbjct: 54 IPTMDDHGLVLWESRVILSYLVSAYGKDENLYPKDFRSRAIVDQRLHFDLGTLY 107
>pdb|3QUF|A Chain A, The Structure Of A Family 1 Extracellular Solute-Binding
Protein From Bifidobacterium Longum Subsp. Infantis
pdb|3QUF|B Chain B, The Structure Of A Family 1 Extracellular Solute-Binding
Protein From Bifidobacterium Longum Subsp. Infantis
Length = 414
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 202 PTVLSVVRNDVSEVT-TGMSLSFSEEDFMDGCSSQDGSIIGQD 243
PT+ ++ ++ ++V +G +L S EDF+DG + ++ QD
Sbjct: 84 PTIFNLTXDNRTDVXKSGAALDISGEDFLDGIDDTNFALFQQD 126
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA 150
F+ K VL++ CG G+ +FA GA V D+S+
Sbjct: 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS 71
>pdb|3CGM|A Chain A, Crystal Structure Of Thermophilic Slyd
pdb|3CGN|A Chain A, Crystal Structure Of Thermophilic Slyd
pdb|3LUO|A Chain A, Crystal Structure And Functional Characterization Of The
The Prolyl Isomerase And Chaperone Slyd
Length = 158
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 179 SLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDF 228
S P + P FYA D E P L+VV + EVT + + +D
Sbjct: 77 SAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDL 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,958,868
Number of Sequences: 62578
Number of extensions: 383052
Number of successful extensions: 753
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 8
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)