Query 018716
Match_columns 351
No_of_seqs 254 out of 1960
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:26:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2920 Predicted methyltransf 100.0 7.7E-36 1.7E-40 283.3 4.9 271 5-351 2-281 (282)
2 PF10294 Methyltransf_16: Puta 99.9 7.1E-27 1.5E-31 209.3 11.6 154 90-328 16-172 (173)
3 KOG3201 Uncharacterized conser 99.8 5.1E-20 1.1E-24 162.8 4.0 170 89-350 5-176 (201)
4 COG3897 Predicted methyltransf 99.6 1.3E-15 2.9E-20 138.5 8.3 159 86-348 54-217 (218)
5 KOG2793 Putative N2,N2-dimethy 99.6 1.4E-14 3E-19 137.0 13.8 177 92-349 54-238 (248)
6 PRK15068 tRNA mo(5)U34 methylt 99.2 1.1E-09 2.3E-14 107.6 16.9 152 94-337 104-273 (322)
7 TIGR00537 hemK_rel_arch HemK-r 99.1 2.5E-09 5.3E-14 95.5 16.1 45 116-162 18-62 (179)
8 PF12847 Methyltransf_18: Meth 99.1 1.2E-09 2.6E-14 88.9 12.4 106 117-308 1-111 (112)
9 PF05175 MTS: Methyltransferas 99.1 4.5E-09 9.9E-14 93.5 16.9 60 96-164 18-78 (170)
10 TIGR00452 methyltransferase, p 99.1 3.3E-09 7.1E-14 104.0 17.2 151 94-338 103-273 (314)
11 COG2264 PrmA Ribosomal protein 99.0 3.6E-09 7.8E-14 102.8 14.4 65 94-165 145-209 (300)
12 PF06325 PrmA: Ribosomal prote 99.0 6.9E-09 1.5E-13 100.9 15.0 65 94-165 144-208 (295)
13 PLN02244 tocopherol O-methyltr 99.0 2.3E-08 5E-13 98.7 18.7 138 116-341 117-280 (340)
14 PF13847 Methyltransf_31: Meth 99.0 1.1E-08 2.4E-13 88.7 12.7 108 117-310 3-112 (152)
15 PLN02396 hexaprenyldihydroxybe 99.0 3.7E-09 8E-14 104.0 10.7 106 116-308 130-235 (322)
16 COG2227 UbiG 2-polyprenyl-3-me 98.9 1.9E-09 4.1E-14 101.4 7.8 126 115-329 57-197 (243)
17 TIGR00406 prmA ribosomal prote 98.9 3.5E-08 7.6E-13 95.2 16.1 64 94-164 142-205 (288)
18 PRK14967 putative methyltransf 98.9 4.2E-08 9.1E-13 90.8 15.3 54 97-155 21-74 (223)
19 PRK00517 prmA ribosomal protei 98.9 9.7E-08 2.1E-12 90.1 17.9 61 95-162 103-163 (250)
20 KOG1270 Methyltransferases [Co 98.9 3.1E-09 6.8E-14 101.0 6.8 111 116-311 88-198 (282)
21 TIGR00138 gidB 16S rRNA methyl 98.9 7E-08 1.5E-12 87.3 14.5 40 116-155 41-81 (181)
22 PF08241 Methyltransf_11: Meth 98.9 2.1E-08 4.6E-13 78.1 9.7 95 122-306 1-95 (95)
23 PRK05134 bifunctional 3-demeth 98.8 1.8E-07 3.9E-12 86.4 17.1 116 101-308 36-151 (233)
24 PRK00107 gidB 16S rRNA methylt 98.8 1.6E-07 3.4E-12 85.6 16.4 127 117-341 45-173 (187)
25 PRK11873 arsM arsenite S-adeno 98.8 7.6E-08 1.6E-12 91.3 14.8 134 116-336 76-228 (272)
26 smart00828 PKS_MT Methyltransf 98.8 1.3E-07 2.8E-12 86.7 15.1 128 119-333 1-139 (224)
27 PRK11207 tellurite resistance 98.8 5.7E-08 1.2E-12 88.5 12.6 39 116-155 29-67 (197)
28 PRK11036 putative S-adenosyl-L 98.8 3.5E-08 7.7E-13 93.0 11.3 105 117-307 44-148 (255)
29 PRK14968 putative methyltransf 98.8 5.7E-07 1.2E-11 79.6 18.4 59 94-162 8-66 (188)
30 PRK08287 cobalt-precorrin-6Y C 98.8 2E-07 4.2E-12 83.8 14.6 120 116-332 30-150 (187)
31 PRK15128 23S rRNA m(5)C1962 me 98.8 1.1E-07 2.4E-12 96.0 14.0 126 116-328 219-355 (396)
32 TIGR00477 tehB tellurite resis 98.8 1E-07 2.3E-12 86.7 12.2 39 116-155 29-67 (195)
33 PF13489 Methyltransf_23: Meth 98.7 6.1E-08 1.3E-12 83.1 9.8 64 267-331 75-156 (161)
34 PRK10258 biotin biosynthesis p 98.7 1.7E-07 3.6E-12 87.9 13.1 99 117-308 42-140 (251)
35 PRK00216 ubiE ubiquinone/menaq 98.7 5.2E-07 1.1E-11 82.6 15.7 105 117-307 51-157 (239)
36 PRK12335 tellurite resistance 98.7 1.3E-07 2.9E-12 90.9 12.1 39 116-155 119-157 (287)
37 PRK14966 unknown domain/N5-glu 98.7 4.9E-07 1.1E-11 91.8 16.4 58 98-162 238-296 (423)
38 PLN02336 phosphoethanolamine N 98.7 7E-07 1.5E-11 91.4 17.5 135 116-339 265-414 (475)
39 TIGR01983 UbiG ubiquinone bios 98.7 3.2E-07 6.9E-12 83.9 13.3 128 94-308 22-149 (224)
40 TIGR03534 RF_mod_PrmC protein- 98.7 8.9E-07 1.9E-11 82.1 16.4 57 94-155 69-126 (251)
41 PF08003 Methyltransf_9: Prote 98.7 7.6E-07 1.6E-11 86.7 16.3 155 94-340 97-269 (315)
42 PRK15001 SAM-dependent 23S rib 98.7 2.9E-07 6.3E-12 92.5 13.5 46 118-164 229-275 (378)
43 PRK10909 rsmD 16S rRNA m(2)G96 98.7 2.4E-07 5.2E-12 85.3 11.9 108 116-310 52-161 (199)
44 PLN02490 MPBQ/MSBQ methyltrans 98.7 1.2E-06 2.5E-11 87.0 17.2 131 116-336 112-254 (340)
45 PLN02585 magnesium protoporphy 98.7 8.3E-07 1.8E-11 87.2 16.1 39 116-155 143-181 (315)
46 PTZ00098 phosphoethanolamine N 98.6 4.3E-07 9.4E-12 86.5 13.3 128 116-334 51-198 (263)
47 TIGR02072 BioC biotin biosynth 98.6 4.2E-07 9.1E-12 82.9 12.7 102 116-308 33-135 (240)
48 PF02353 CMAS: Mycolic acid cy 98.6 4.3E-07 9.3E-12 87.5 13.2 117 96-306 45-164 (273)
49 PRK11783 rlmL 23S rRNA m(2)G24 98.6 2.5E-07 5.4E-12 99.6 12.6 48 116-164 537-584 (702)
50 TIGR02752 MenG_heptapren 2-hep 98.6 4.2E-07 9E-12 83.8 12.1 105 116-307 44-150 (231)
51 PRK00121 trmB tRNA (guanine-N( 98.6 2.9E-07 6.3E-12 84.3 10.9 125 117-331 40-174 (202)
52 PLN02233 ubiquinone biosynthes 98.6 6.5E-07 1.4E-11 85.3 13.5 108 116-307 72-181 (261)
53 PRK01683 trans-aconitate 2-met 98.6 7.8E-07 1.7E-11 83.5 13.8 99 116-307 30-129 (258)
54 PRK09328 N5-glutamine S-adenos 98.6 3.6E-06 7.9E-11 79.4 18.0 59 99-162 94-153 (275)
55 PRK00377 cbiT cobalt-precorrin 98.6 1.8E-06 4E-11 78.5 15.4 130 115-338 38-169 (198)
56 TIGR02469 CbiT precorrin-6Y C5 98.6 3.2E-06 6.9E-11 69.4 15.3 40 116-155 18-58 (124)
57 COG4123 Predicted O-methyltran 98.6 1.1E-06 2.5E-11 83.4 13.7 66 91-165 26-92 (248)
58 TIGR00536 hemK_fam HemK family 98.6 1.9E-06 4.2E-11 82.8 15.5 45 119-164 116-161 (284)
59 PF13659 Methyltransf_26: Meth 98.6 1.7E-07 3.6E-12 77.0 6.9 38 118-155 1-38 (117)
60 PRK08317 hypothetical protein; 98.5 2.9E-06 6.2E-11 77.1 15.3 104 116-307 18-123 (241)
61 PRK14103 trans-aconitate 2-met 98.5 5.6E-07 1.2E-11 84.8 10.7 39 268-307 87-125 (255)
62 PRK01544 bifunctional N5-gluta 98.5 2.3E-06 5E-11 89.0 16.1 47 117-164 138-185 (506)
63 TIGR03533 L3_gln_methyl protei 98.5 1.8E-06 3.9E-11 83.4 13.3 47 117-164 121-168 (284)
64 TIGR00095 RNA methyltransferas 98.5 2.3E-06 4.9E-11 78.0 12.9 48 116-164 48-95 (189)
65 PRK09489 rsmC 16S ribosomal RN 98.5 1.5E-06 3.2E-11 86.3 12.3 46 118-164 197-243 (342)
66 COG2890 HemK Methylase of poly 98.5 5.1E-06 1.1E-10 80.3 15.4 45 120-165 113-158 (280)
67 TIGR02021 BchM-ChlM magnesium 98.5 3.3E-06 7.1E-11 77.6 13.3 40 115-155 53-92 (219)
68 PRK11705 cyclopropane fatty ac 98.5 3.3E-06 7.2E-11 84.9 14.4 39 116-155 166-205 (383)
69 KOG1499 Protein arginine N-met 98.4 5.4E-07 1.2E-11 88.8 8.4 52 112-165 55-106 (346)
70 PF08242 Methyltransf_12: Meth 98.4 5.7E-08 1.2E-12 78.0 1.2 35 269-304 65-99 (99)
71 TIGR03704 PrmC_rel_meth putati 98.4 8.9E-06 1.9E-10 77.2 16.3 61 99-163 71-132 (251)
72 COG2263 Predicted RNA methylas 98.4 5.9E-07 1.3E-11 82.0 7.9 78 77-163 13-90 (198)
73 TIGR01934 MenG_MenH_UbiE ubiqu 98.4 3.1E-06 6.7E-11 76.6 12.6 102 117-307 39-142 (223)
74 PRK15451 tRNA cmo(5)U34 methyl 98.4 4.4E-06 9.6E-11 78.7 13.8 40 116-155 55-97 (247)
75 PRK11805 N5-glutamine S-adenos 98.4 8.2E-06 1.8E-10 79.8 15.4 45 119-164 135-180 (307)
76 TIGR03587 Pse_Me-ase pseudamin 98.4 3.9E-06 8.4E-11 77.3 12.4 40 116-155 42-82 (204)
77 PF13649 Methyltransf_25: Meth 98.4 8.4E-07 1.8E-11 71.7 7.0 35 121-155 1-39 (101)
78 PF03848 TehB: Tellurite resis 98.4 4E-06 8.7E-11 77.0 12.1 39 116-155 29-67 (192)
79 cd02440 AdoMet_MTases S-adenos 98.4 4.6E-06 9.9E-11 64.0 10.5 39 268-307 64-103 (107)
80 TIGR00740 methyltransferase, p 98.4 1.1E-05 2.4E-10 75.2 14.5 40 116-155 52-94 (239)
81 PLN02781 Probable caffeoyl-CoA 98.4 1.1E-05 2.3E-10 76.0 14.2 139 116-337 67-221 (234)
82 TIGR00080 pimt protein-L-isoas 98.3 5.6E-06 1.2E-10 76.2 12.1 40 116-155 76-117 (215)
83 COG2230 Cfa Cyclopropane fatty 98.3 7.8E-06 1.7E-10 79.1 13.4 118 95-306 54-174 (283)
84 PRK07580 Mg-protoporphyrin IX 98.3 7.9E-06 1.7E-10 74.9 12.9 39 116-155 62-100 (230)
85 PRK13168 rumA 23S rRNA m(5)U19 98.3 8.6E-06 1.9E-10 83.2 13.2 60 99-164 283-342 (443)
86 PRK13944 protein-L-isoaspartat 98.3 1.1E-05 2.3E-10 74.1 12.4 40 116-155 71-112 (205)
87 PLN02672 methionine S-methyltr 98.3 1.3E-05 2.8E-10 89.6 15.3 95 96-200 100-195 (1082)
88 PF05401 NodS: Nodulation prot 98.3 4.3E-06 9.3E-11 77.0 9.5 122 117-329 43-171 (201)
89 PF01209 Ubie_methyltran: ubiE 98.3 6.9E-06 1.5E-10 77.3 10.9 54 92-155 32-87 (233)
90 COG2226 UbiE Methylase involve 98.3 7.9E-06 1.7E-10 77.4 10.9 119 92-307 36-155 (238)
91 PRK11188 rrmJ 23S rRNA methylt 98.2 4E-05 8.7E-10 70.8 14.8 138 115-348 49-203 (209)
92 PLN03075 nicotianamine synthas 98.2 2.7E-05 5.9E-10 75.9 14.3 107 117-308 123-233 (296)
93 TIGR01177 conserved hypothetic 98.2 3E-05 6.6E-10 76.1 14.5 52 99-155 168-219 (329)
94 PRK00312 pcm protein-L-isoaspa 98.2 3E-05 6.6E-10 71.0 13.2 52 99-155 64-115 (212)
95 PRK05785 hypothetical protein; 98.2 1.3E-05 2.9E-10 74.8 10.6 39 117-155 51-89 (226)
96 TIGR00091 tRNA (guanine-N(7)-) 98.2 2E-05 4.4E-10 71.5 11.5 39 117-155 16-55 (194)
97 KOG1271 Methyltransferases [Ge 98.2 3.8E-05 8.3E-10 70.2 13.0 59 96-155 46-106 (227)
98 PLN02336 phosphoethanolamine N 98.2 1.2E-05 2.7E-10 82.3 11.2 104 116-307 36-141 (475)
99 PRK04266 fibrillarin; Provisio 98.2 0.00014 3E-09 68.3 17.3 40 116-155 71-111 (226)
100 PRK13942 protein-L-isoaspartat 98.2 2.5E-05 5.5E-10 72.1 12.2 40 116-155 75-116 (212)
101 TIGR03840 TMPT_Se_Te thiopurin 98.2 1.9E-05 4E-10 73.4 11.0 63 87-155 6-71 (213)
102 COG2813 RsmC 16S RNA G1207 met 98.2 3E-05 6.5E-10 75.5 12.8 47 118-165 159-206 (300)
103 PRK07402 precorrin-6B methylas 98.1 4.4E-05 9.6E-10 69.1 13.1 46 116-162 39-85 (196)
104 COG1092 Predicted SAM-dependen 98.1 2.5E-05 5.5E-10 78.9 12.5 50 116-166 216-265 (393)
105 PRK00811 spermidine synthase; 98.1 4.7E-05 1E-09 73.5 13.8 40 117-156 76-116 (283)
106 smart00650 rADc Ribosomal RNA 98.1 3.4E-05 7.5E-10 68.3 11.7 39 116-155 12-50 (169)
107 PRK03522 rumB 23S rRNA methylu 98.1 1.5E-05 3.2E-10 77.9 10.2 47 116-164 172-218 (315)
108 TIGR02085 meth_trns_rumB 23S r 98.1 1.5E-05 3.3E-10 79.8 10.5 47 116-164 232-278 (374)
109 smart00138 MeTrc Methyltransfe 98.1 2.2E-05 4.7E-10 75.1 10.9 42 268-310 201-244 (264)
110 PHA03411 putative methyltransf 98.1 4.2E-05 9.2E-10 73.9 12.7 38 118-155 65-103 (279)
111 KOG3191 Predicted N6-DNA-methy 98.1 6.4E-05 1.4E-09 68.6 12.3 75 86-166 17-93 (209)
112 PRK03612 spermidine synthase; 98.0 4.1E-05 8.8E-10 80.0 12.0 40 117-156 297-337 (521)
113 TIGR02716 C20_methyl_CrtF C-20 98.0 7.6E-05 1.6E-09 72.2 12.5 38 117-155 149-187 (306)
114 TIGR00479 rumA 23S rRNA (uraci 98.0 8.3E-05 1.8E-09 75.5 13.2 47 116-164 291-337 (431)
115 PRK13255 thiopurine S-methyltr 98.0 5.8E-05 1.3E-09 70.4 11.1 51 99-155 24-74 (218)
116 KOG1500 Protein arginine N-met 98.0 3.2E-05 7E-10 76.3 9.5 40 113-153 173-212 (517)
117 PF03602 Cons_hypoth95: Conser 98.0 3.3E-05 7.2E-10 70.2 9.0 57 100-167 31-87 (183)
118 PTZ00146 fibrillarin; Provisio 98.0 0.00033 7.2E-09 68.3 16.1 63 92-155 107-172 (293)
119 COG4976 Predicted methyltransf 98.0 6.9E-06 1.5E-10 77.3 4.2 64 267-331 185-258 (287)
120 TIGR00438 rrmJ cell division p 97.9 0.0001 2.2E-09 66.3 11.2 37 115-151 30-68 (188)
121 PRK14902 16S rRNA methyltransf 97.9 0.00019 4.2E-09 73.3 14.5 46 116-162 249-296 (444)
122 PRK11088 rrmA 23S rRNA methylt 97.9 0.00014 3.1E-09 69.3 12.6 39 117-155 85-127 (272)
123 PRK06922 hypothetical protein; 97.9 8.1E-05 1.8E-09 79.4 11.8 40 116-155 417-457 (677)
124 PRK10901 16S rRNA methyltransf 97.9 0.0003 6.4E-09 71.7 15.3 40 116-155 243-283 (427)
125 PRK13943 protein-L-isoaspartat 97.9 0.00016 3.4E-09 71.4 12.7 40 116-155 79-120 (322)
126 PRK04457 spermidine synthase; 97.9 4.9E-05 1.1E-09 72.7 8.6 39 117-155 66-105 (262)
127 PF05219 DREV: DREV methyltran 97.9 0.00019 4E-09 68.8 12.1 67 268-336 149-237 (265)
128 PRK06202 hypothetical protein; 97.8 0.00011 2.3E-09 68.3 9.8 40 116-155 59-103 (232)
129 TIGR00478 tly hemolysin TlyA f 97.8 4.7E-05 1E-09 71.7 7.2 57 94-154 56-112 (228)
130 PRK14904 16S rRNA methyltransf 97.8 0.00015 3.2E-09 74.3 11.4 57 92-155 232-290 (445)
131 TIGR02081 metW methionine bios 97.8 0.00047 1E-08 62.3 13.4 38 117-154 13-50 (194)
132 PRK01581 speE spermidine synth 97.8 0.00025 5.5E-09 71.1 12.5 39 117-155 150-189 (374)
133 PRK04148 hypothetical protein; 97.8 0.00011 2.4E-09 63.9 8.7 49 100-153 3-52 (134)
134 TIGR03438 probable methyltrans 97.8 0.00017 3.8E-09 70.0 11.0 39 117-155 63-103 (301)
135 PRK05031 tRNA (uracil-5-)-meth 97.8 0.00018 4E-09 71.8 11.3 60 98-164 192-251 (362)
136 TIGR02143 trmA_only tRNA (urac 97.8 0.00022 4.9E-09 71.0 11.6 45 118-164 198-242 (353)
137 PF10672 Methyltrans_SAM: S-ad 97.8 0.00012 2.6E-09 71.2 9.3 49 116-165 122-170 (286)
138 PLN02476 O-methyltransferase 97.8 0.0012 2.5E-08 64.1 15.9 138 116-337 117-266 (278)
139 PF01596 Methyltransf_3: O-met 97.7 0.0012 2.5E-08 61.3 14.7 138 116-337 44-193 (205)
140 TIGR00417 speE spermidine synt 97.7 0.00048 1.1E-08 65.9 12.0 39 117-155 72-111 (270)
141 KOG4300 Predicted methyltransf 97.7 0.00018 3.9E-09 67.0 8.6 40 267-307 142-181 (252)
142 KOG2497 Predicted methyltransf 97.7 1.9E-05 4E-10 75.8 2.0 46 90-139 67-112 (262)
143 PF07021 MetW: Methionine bios 97.7 0.00045 9.6E-09 63.5 10.8 38 116-153 12-49 (193)
144 PRK04338 N(2),N(2)-dimethylgua 97.7 0.00024 5.3E-09 71.6 9.8 46 118-164 58-104 (382)
145 COG2242 CobL Precorrin-6B meth 97.6 0.0041 9E-08 56.9 16.6 47 116-167 33-80 (187)
146 PF05185 PRMT5: PRMT5 arginine 97.6 0.00036 7.8E-09 71.8 10.6 53 101-153 170-227 (448)
147 PRK14121 tRNA (guanine-N(7)-)- 97.6 0.0004 8.7E-09 70.2 10.4 40 116-155 121-161 (390)
148 PRK14901 16S rRNA methyltransf 97.6 0.00078 1.7E-08 68.8 12.3 47 116-163 251-299 (434)
149 KOG3010 Methyltransferase [Gen 97.6 0.00022 4.7E-09 67.6 7.4 35 119-154 35-69 (261)
150 PHA03412 putative methyltransf 97.6 0.0009 2E-08 63.5 11.6 39 117-155 49-91 (241)
151 COG4122 Predicted O-methyltran 97.6 0.0039 8.4E-08 58.5 15.6 148 96-338 45-207 (219)
152 PLN02366 spermidine synthase 97.5 0.0011 2.4E-08 65.0 12.4 39 117-155 91-130 (308)
153 TIGR00563 rsmB ribosomal RNA s 97.5 0.0019 4.1E-08 65.8 14.1 58 96-162 225-283 (426)
154 KOG3420 Predicted RNA methylas 97.5 9.6E-05 2.1E-09 65.4 4.0 49 114-167 45-93 (185)
155 PRK14903 16S rRNA methyltransf 97.5 0.00088 1.9E-08 68.5 11.4 40 116-155 236-277 (431)
156 TIGR00446 nop2p NOL1/NOP2/sun 97.5 0.00077 1.7E-08 64.3 10.0 48 116-164 70-119 (264)
157 PRK00274 ksgA 16S ribosomal RN 97.5 0.00049 1.1E-08 66.0 8.5 55 94-155 25-79 (272)
158 TIGR00308 TRM1 tRNA(guanine-26 97.4 0.00063 1.4E-08 68.5 9.1 46 118-164 45-92 (374)
159 PTZ00338 dimethyladenosine tra 97.4 0.002 4.4E-08 62.8 12.3 51 100-155 23-73 (294)
160 KOG2904 Predicted methyltransf 97.4 0.0011 2.4E-08 64.1 9.5 73 93-168 126-199 (328)
161 COG0742 N6-adenine-specific me 97.2 0.0053 1.2E-07 56.3 12.3 50 100-155 32-81 (187)
162 PRK11727 23S rRNA mA1618 methy 97.1 0.0015 3.2E-08 64.6 7.4 47 117-164 114-161 (321)
163 COG4106 Tam Trans-aconitate me 97.0 0.0021 4.7E-08 60.3 7.7 39 116-154 29-68 (257)
164 PLN02589 caffeoyl-CoA O-methyl 96.9 0.016 3.4E-07 55.4 12.9 138 116-337 78-234 (247)
165 PRK14896 ksgA 16S ribosomal RN 96.9 0.0046 9.9E-08 58.8 9.0 51 100-155 16-66 (258)
166 PF01135 PCMT: Protein-L-isoas 96.9 0.0058 1.3E-07 56.8 9.2 41 115-155 70-112 (209)
167 COG2518 Pcm Protein-L-isoaspar 96.9 0.0063 1.4E-07 56.7 9.2 54 97-155 56-109 (209)
168 KOG1540 Ubiquinone biosynthesi 96.8 0.02 4.3E-07 55.1 12.3 38 116-153 99-143 (296)
169 PF06080 DUF938: Protein of un 96.8 0.03 6.6E-07 52.0 13.0 62 267-329 99-164 (204)
170 PF07942 N2227: N2227-like pro 96.8 0.034 7.3E-07 53.8 13.8 160 116-331 55-235 (270)
171 PRK13256 thiopurine S-methyltr 96.8 0.0057 1.2E-07 57.6 8.3 66 84-155 12-80 (226)
172 KOG2899 Predicted methyltransf 96.7 0.019 4.1E-07 54.9 11.5 42 114-155 55-97 (288)
173 TIGR00755 ksgA dimethyladenosi 96.7 0.0086 1.9E-07 56.6 8.9 39 116-155 28-66 (253)
174 PLN02823 spermine synthase 96.6 0.043 9.4E-07 54.6 13.8 39 117-155 103-142 (336)
175 PF02527 GidB: rRNA small subu 96.6 0.05 1.1E-06 49.7 12.7 36 118-153 49-85 (184)
176 PF00891 Methyltransf_2: O-met 96.6 0.016 3.4E-07 54.0 9.7 37 117-154 100-137 (241)
177 PRK00536 speE spermidine synth 96.6 0.025 5.4E-07 54.5 11.2 39 117-156 72-110 (262)
178 PHA01634 hypothetical protein 96.5 0.0057 1.2E-07 53.1 5.6 52 113-165 24-75 (156)
179 COG2519 GCD14 tRNA(1-methylade 96.5 0.11 2.3E-06 50.0 14.5 47 115-162 92-140 (256)
180 PF02475 Met_10: Met-10+ like- 96.4 0.0073 1.6E-07 55.9 6.3 49 116-165 100-149 (200)
181 KOG1541 Predicted protein carb 96.3 0.0061 1.3E-07 57.5 5.1 38 117-155 50-87 (270)
182 COG1352 CheR Methylase of chem 96.1 0.064 1.4E-06 51.8 11.0 44 267-311 199-244 (268)
183 PF09243 Rsm22: Mitochondrial 96.0 0.17 3.6E-06 48.8 13.8 60 95-154 11-72 (274)
184 PF08704 GCD14: tRNA methyltra 95.9 0.28 6E-06 46.9 14.3 48 114-166 37-86 (247)
185 TIGR01444 fkbM_fam methyltrans 95.8 0.018 3.8E-07 48.8 5.4 44 120-164 1-45 (143)
186 PF08123 DOT1: Histone methyla 95.7 0.1 2.2E-06 48.5 10.4 39 116-154 41-80 (205)
187 PF01861 DUF43: Protein of unk 95.6 0.64 1.4E-05 44.4 15.5 166 88-346 20-186 (243)
188 COG3963 Phospholipid N-methylt 95.5 0.04 8.6E-07 50.1 6.4 61 90-155 26-88 (194)
189 KOG2361 Predicted methyltransf 95.4 0.06 1.3E-06 51.4 7.9 36 120-155 74-112 (264)
190 PRK11760 putative 23S rRNA C24 95.4 0.16 3.5E-06 50.9 11.1 35 115-150 209-243 (357)
191 COG1189 Predicted rRNA methyla 95.3 0.04 8.7E-07 52.4 6.3 54 94-151 60-113 (245)
192 PF13679 Methyltransf_32: Meth 94.9 0.11 2.5E-06 44.7 7.5 55 100-154 8-67 (141)
193 PF02390 Methyltransf_4: Putat 94.9 0.34 7.3E-06 44.4 10.9 38 118-155 18-56 (195)
194 PRK10611 chemotaxis methyltran 94.8 0.13 2.9E-06 50.1 8.4 43 268-311 221-265 (287)
195 KOG2940 Predicted methyltransf 94.7 0.053 1.2E-06 51.6 5.3 39 117-155 72-110 (325)
196 PF01564 Spermine_synth: Sperm 94.6 0.77 1.7E-05 43.6 13.1 40 117-156 76-116 (246)
197 PF05958 tRNA_U5-meth_tr: tRNA 94.6 0.096 2.1E-06 52.3 7.2 65 94-165 178-242 (352)
198 COG2520 Predicted methyltransf 94.5 0.12 2.6E-06 51.7 7.4 51 115-166 186-236 (341)
199 PF01739 CheR: CheR methyltran 94.1 0.14 3E-06 47.2 6.6 43 267-310 133-177 (196)
200 PF09445 Methyltransf_15: RNA 94.0 0.15 3.2E-06 45.9 6.3 60 119-201 1-60 (163)
201 COG2521 Predicted archaeal met 94.0 0.089 1.9E-06 50.2 5.1 40 116-155 133-172 (287)
202 KOG3987 Uncharacterized conser 93.7 0.0082 1.8E-07 56.2 -2.3 53 100-155 97-149 (288)
203 PRK11783 rlmL 23S rRNA m(2)G24 93.7 0.8 1.7E-05 49.9 12.5 36 99-137 175-210 (702)
204 PF00398 RrnaAD: Ribosomal RNA 93.3 0.22 4.8E-06 47.4 6.6 52 99-155 16-67 (262)
205 PF11968 DUF3321: Putative met 93.2 1.4 2.9E-05 41.6 11.4 64 267-335 101-178 (219)
206 COG2265 TrmA SAM-dependent met 93.2 0.23 5E-06 51.2 6.9 48 116-165 292-339 (432)
207 PF01170 UPF0020: Putative RNA 93.1 1.8 3.9E-05 38.9 12.0 52 100-155 15-76 (179)
208 COG0030 KsgA Dimethyladenosine 93.0 0.24 5.2E-06 47.7 6.3 55 94-155 13-67 (259)
209 PF05724 TPMT: Thiopurine S-me 92.9 0.12 2.6E-06 48.3 4.1 58 92-155 14-74 (218)
210 COG0421 SpeE Spermidine syntha 92.8 1.3 2.8E-05 43.2 11.2 37 119-155 78-115 (282)
211 PF05148 Methyltransf_8: Hypot 92.8 2.8 6E-05 39.5 12.8 59 268-331 120-178 (219)
212 PF05971 Methyltransf_10: Prot 92.5 0.41 8.9E-06 47.1 7.3 67 96-164 80-149 (299)
213 COG0357 GidB Predicted S-adeno 92.4 0.19 4.2E-06 47.1 4.7 34 118-151 68-102 (215)
214 KOG1709 Guanidinoacetate methy 92.1 1 2.2E-05 42.8 9.0 40 116-155 100-139 (271)
215 COG0220 Predicted S-adenosylme 92.1 0.58 1.3E-05 44.2 7.6 37 119-155 50-87 (227)
216 COG0500 SmtA SAM-dependent met 92.1 2.8 6E-05 32.3 10.4 40 269-310 118-157 (257)
217 PF04816 DUF633: Family of unk 91.8 0.58 1.3E-05 43.4 7.1 35 121-155 1-36 (205)
218 PLN02232 ubiquinone biosynthes 91.7 0.67 1.4E-05 40.7 7.2 39 268-307 42-80 (160)
219 COG1041 Predicted DNA modifica 91.6 5.5 0.00012 40.0 14.2 75 80-167 167-241 (347)
220 PF03291 Pox_MCEL: mRNA cappin 91.0 0.51 1.1E-05 46.9 6.3 58 94-156 43-101 (331)
221 COG4076 Predicted RNA methylas 91.0 0.16 3.4E-06 47.2 2.4 48 117-166 32-79 (252)
222 KOG2798 Putative trehalase [Ca 90.7 4.5 9.7E-05 40.4 12.2 48 117-168 150-197 (369)
223 KOG0820 Ribosomal RNA adenine 90.6 0.68 1.5E-05 45.2 6.5 40 115-155 56-95 (315)
224 KOG2187 tRNA uracil-5-methyltr 90.4 1 2.2E-05 47.2 8.0 62 97-164 367-428 (534)
225 KOG3045 Predicted RNA methylas 87.8 6.6 0.00014 38.3 10.8 64 268-336 226-289 (325)
226 KOG1501 Arginine N-methyltrans 87.7 0.64 1.4E-05 48.1 4.2 36 120-155 69-104 (636)
227 PF01728 FtsJ: FtsJ-like methy 87.3 1.3 2.8E-05 39.3 5.6 51 97-151 5-59 (181)
228 COG4262 Predicted spermidine s 86.6 6.4 0.00014 40.2 10.4 39 118-156 290-329 (508)
229 PF03141 Methyltransf_29: Puta 86.4 2.1 4.6E-05 44.8 7.2 44 94-140 94-140 (506)
230 PRK00050 16S rRNA m(4)C1402 me 85.8 2.1 4.6E-05 42.0 6.6 40 116-155 18-59 (296)
231 PRK01544 bifunctional N5-gluta 85.8 4.2 9.1E-05 42.7 9.2 38 117-154 347-385 (506)
232 KOG0024 Sorbitol dehydrogenase 85.6 1.1 2.5E-05 44.5 4.6 40 116-155 168-209 (354)
233 PRK10742 putative methyltransf 83.6 2.6 5.6E-05 40.5 5.9 41 120-162 91-131 (250)
234 PF02384 N6_Mtase: N-6 DNA Met 83.0 3.3 7.2E-05 39.9 6.6 60 99-163 32-99 (311)
235 TIGR02987 met_A_Alw26 type II 81.7 2.7 5.8E-05 44.0 5.7 39 117-155 31-78 (524)
236 COG1568 Predicted methyltransf 81.6 3.5 7.7E-05 40.5 6.0 39 114-153 149-188 (354)
237 COG1867 TRM1 N2,N2-dimethylgua 79.8 2.9 6.4E-05 42.3 5.0 46 118-164 53-99 (380)
238 PF12147 Methyltransf_20: Puta 77.3 54 0.0012 32.5 12.7 35 117-151 135-172 (311)
239 PF02636 Methyltransf_28: Puta 75.6 5.9 0.00013 37.3 5.6 53 101-153 2-63 (252)
240 PF03686 UPF0146: Uncharacteri 74.6 8.7 0.00019 33.3 5.8 45 99-151 2-47 (127)
241 KOG1975 mRNA cap methyltransfe 74.1 4.1 8.9E-05 40.8 4.1 40 117-156 117-156 (389)
242 KOG1661 Protein-L-isoaspartate 74.0 5.9 0.00013 37.5 4.9 40 116-155 81-123 (237)
243 KOG1227 Putative methyltransfe 73.1 3 6.5E-05 41.3 2.9 76 92-168 167-245 (351)
244 PF02005 TRM: N2,N2-dimethylgu 71.6 5.4 0.00012 40.4 4.5 48 118-166 50-99 (377)
245 PRK11933 yebU rRNA (cytosine-C 68.9 20 0.00043 37.5 8.0 46 116-162 112-159 (470)
246 KOG1269 SAM-dependent methyltr 68.5 21 0.00046 36.1 7.9 39 116-154 109-147 (364)
247 COG1063 Tdh Threonine dehydrog 68.3 9.7 0.00021 37.8 5.4 39 116-154 167-207 (350)
248 cd00315 Cyt_C5_DNA_methylase C 68.2 11 0.00023 36.2 5.6 35 120-154 2-36 (275)
249 COG2384 Predicted SAM-dependen 67.1 16 0.00034 34.7 6.2 47 117-164 16-63 (226)
250 PF01234 NNMT_PNMT_TEMT: NNMT/ 66.8 3.5 7.7E-05 39.7 1.9 39 115-153 54-92 (256)
251 TIGR03439 methyl_EasF probable 66.5 14 0.0003 36.7 6.1 39 117-155 76-119 (319)
252 COG5459 Predicted rRNA methyla 61.3 18 0.00039 36.9 5.7 41 268-308 183-225 (484)
253 PF05206 TRM13: Methyltransfer 61.1 17 0.00038 35.0 5.5 37 114-150 15-57 (259)
254 COG0116 Predicted N6-adenine-s 60.2 1.5E+02 0.0034 30.3 12.2 36 100-139 178-213 (381)
255 PF07757 AdoMet_MTase: Predict 59.8 17 0.00037 30.8 4.5 49 99-148 40-88 (112)
256 KOG2730 Methylase [General fun 59.3 14 0.00031 35.3 4.4 82 95-202 75-156 (263)
257 PRK09424 pntA NAD(P) transhydr 57.5 17 0.00036 38.5 5.1 40 115-155 162-203 (509)
258 PF01189 Nol1_Nop2_Fmu: NOL1/N 56.4 63 0.0014 31.2 8.6 59 90-155 65-125 (283)
259 COG1889 NOP1 Fibrillarin-like 53.1 2.1E+02 0.0045 27.2 12.0 64 92-156 51-116 (231)
260 PF01555 N6_N4_Mtase: DNA meth 52.4 38 0.00082 30.1 5.9 52 98-155 177-228 (231)
261 COG0293 FtsJ 23S rRNA methylas 50.0 36 0.00078 31.8 5.4 51 96-150 28-80 (205)
262 COG1565 Uncharacterized conser 49.5 71 0.0015 32.5 7.8 56 99-155 60-124 (370)
263 COG1255 Uncharacterized protei 49.2 31 0.00068 29.7 4.4 44 100-151 3-47 (129)
264 cd00401 AdoHcyase S-adenosyl-L 47.9 26 0.00056 36.1 4.5 57 86-153 180-238 (413)
265 PF05891 Methyltransf_PK: AdoM 45.7 26 0.00056 33.1 3.8 40 116-155 54-93 (218)
266 KOG2671 Putative RNA methylase 44.3 17 0.00038 36.8 2.5 81 80-168 178-260 (421)
267 PF07090 DUF1355: Protein of u 43.4 23 0.00049 32.3 3.0 49 267-316 64-116 (177)
268 cd08283 FDH_like_1 Glutathione 42.6 43 0.00094 33.1 5.2 40 116-155 183-224 (386)
269 PF07091 FmrO: Ribosomal RNA m 41.4 36 0.00078 32.8 4.1 38 118-155 106-144 (251)
270 PRK15001 SAM-dependent 23S rib 40.6 3.1E+02 0.0068 27.9 11.0 62 92-164 25-87 (378)
271 PLN02668 indole-3-acetate carb 39.4 19 0.00041 36.8 2.0 35 117-151 63-113 (386)
272 cd01080 NAD_bind_m-THF_DH_Cycl 38.5 56 0.0012 29.3 4.7 50 93-150 26-78 (168)
273 PRK09880 L-idonate 5-dehydroge 36.5 61 0.0013 31.4 5.0 37 116-154 168-208 (343)
274 KOG2078 tRNA modification enzy 36.3 16 0.00035 37.9 0.9 49 116-166 248-296 (495)
275 PRK11524 putative methyltransf 35.5 1.3E+02 0.0028 28.9 7.0 51 99-155 195-245 (284)
276 KOG4058 Uncharacterized conser 35.1 42 0.00092 30.3 3.3 38 117-154 72-109 (199)
277 cd05191 NAD_bind_amino_acid_DH 34.8 1.4E+02 0.003 23.1 5.9 49 100-148 5-55 (86)
278 cd08237 ribitol-5-phosphate_DH 34.3 64 0.0014 31.4 4.8 39 116-154 162-203 (341)
279 TIGR02356 adenyl_thiF thiazole 33.8 42 0.0009 30.7 3.2 46 115-165 18-65 (202)
280 PRK08328 hypothetical protein; 32.8 41 0.0009 31.4 3.1 46 115-165 24-71 (231)
281 PRK13699 putative methylase; P 32.7 1.6E+02 0.0035 27.5 7.0 50 99-154 150-199 (227)
282 PF11599 AviRa: RRNA methyltra 32.7 1.2E+02 0.0026 29.0 6.0 44 118-162 52-98 (246)
283 cd00755 YgdL_like Family of ac 32.3 43 0.00093 31.6 3.1 46 115-165 8-55 (231)
284 KOG1201 Hydroxysteroid 17-beta 32.1 1.4E+02 0.0031 29.6 6.6 42 113-155 33-77 (300)
285 TIGR03366 HpnZ_proposed putati 32.0 84 0.0018 29.5 5.1 38 116-153 119-158 (280)
286 PRK08223 hypothetical protein; 31.8 30 0.00066 33.9 2.0 49 113-166 22-72 (287)
287 cd05311 NAD_bind_2_malic_enz N 30.9 1.2E+02 0.0026 28.3 5.8 53 97-150 5-61 (226)
288 PF11899 DUF3419: Protein of u 30.7 1E+02 0.0022 31.4 5.6 53 93-154 19-71 (380)
289 KOG2915 tRNA(1-methyladenosine 30.4 1.5E+02 0.0032 29.4 6.3 38 115-152 103-142 (314)
290 PF00899 ThiF: ThiF family; I 30.0 58 0.0013 27.3 3.3 33 118-150 2-36 (135)
291 KOG1663 O-methyltransferase [S 30.0 1.4E+02 0.003 28.6 6.0 52 100-155 60-113 (237)
292 TIGR01202 bchC 2-desacetyl-2-h 29.9 78 0.0017 30.3 4.5 38 116-153 143-182 (308)
293 PLN02740 Alcohol dehydrogenase 29.9 85 0.0018 31.0 4.9 37 116-154 197-237 (381)
294 PRK15116 sulfur acceptor prote 29.7 37 0.00081 32.8 2.2 46 115-165 27-74 (268)
295 COG1062 AdhC Zn-dependent alco 29.7 93 0.002 31.6 5.0 38 116-153 184-223 (366)
296 PF10237 N6-adenineMlase: Prob 29.6 4.1E+02 0.0089 23.7 10.3 41 268-310 84-125 (162)
297 COG4017 Uncharacterized protei 29.4 90 0.0019 29.4 4.5 68 92-162 19-88 (254)
298 TIGR01381 E1_like_apg7 E1-like 28.8 59 0.0013 35.6 3.7 36 115-150 335-372 (664)
299 TIGR02354 thiF_fam2 thiamine b 28.3 67 0.0015 29.4 3.6 37 114-150 17-55 (200)
300 TIGR02818 adh_III_F_hyde S-(hy 27.9 1.1E+02 0.0023 30.2 5.2 39 116-154 184-224 (368)
301 PF00145 DNA_methylase: C-5 cy 27.8 1.3E+02 0.0028 28.3 5.6 35 120-154 2-36 (335)
302 COG3129 Predicted SAM-dependen 27.2 80 0.0017 30.6 3.9 61 100-164 59-125 (292)
303 KOG0022 Alcohol dehydrogenase, 26.0 1.1E+02 0.0024 30.9 4.8 39 116-154 191-231 (375)
304 cd01075 NAD_bind_Leu_Phe_Val_D 25.8 3.3E+02 0.0071 24.8 7.6 39 113-154 23-65 (200)
305 PRK05690 molybdopterin biosynt 25.4 79 0.0017 29.8 3.6 47 115-166 29-77 (245)
306 PRK06949 short chain dehydroge 25.3 3.5E+02 0.0076 24.3 7.9 38 114-153 5-46 (258)
307 PF01488 Shikimate_DH: Shikima 25.1 1.6E+02 0.0035 24.8 5.2 39 115-153 9-49 (135)
308 PF03059 NAS: Nicotianamine sy 24.5 6.7E+02 0.014 24.5 13.0 38 118-155 121-161 (276)
309 COG1064 AdhP Zn-dependent alco 24.2 1.4E+02 0.003 30.1 5.2 38 115-154 164-204 (339)
310 PRK09242 tropinone reductase; 23.7 3.4E+02 0.0074 24.6 7.5 40 113-153 4-46 (257)
311 PRK12826 3-ketoacyl-(acyl-carr 23.5 4E+02 0.0086 23.7 7.8 35 116-152 4-42 (251)
312 TIGR03451 mycoS_dep_FDH mycoth 23.5 1.4E+02 0.0031 29.0 5.1 36 116-153 175-214 (358)
313 PF02086 MethyltransfD12: D12 23.4 1.3E+02 0.0028 27.7 4.6 51 100-155 7-57 (260)
314 KOG2017 Molybdopterin synthase 22.6 90 0.002 31.9 3.5 50 112-166 60-111 (427)
315 TIGR00936 ahcY adenosylhomocys 22.4 88 0.0019 32.2 3.5 55 86-151 173-229 (406)
316 PRK06153 hypothetical protein; 22.1 91 0.002 32.0 3.4 36 115-150 173-210 (393)
317 cd08281 liver_ADH_like1 Zinc-d 22.0 1.5E+02 0.0033 29.0 5.0 36 116-153 190-229 (371)
318 KOG2651 rRNA adenine N-6-methy 21.5 2.1E+02 0.0047 29.6 5.9 37 117-153 153-189 (476)
319 PRK12749 quinate/shikimate deh 21.3 1.7E+02 0.0036 28.5 5.0 38 114-151 120-159 (288)
320 PRK06172 short chain dehydroge 21.1 4.3E+02 0.0093 23.8 7.6 37 116-153 5-44 (253)
321 TIGR00675 dcm DNA-methyltransf 20.8 1.7E+02 0.0036 28.7 5.0 34 121-154 1-34 (315)
322 TIGR02355 moeB molybdopterin s 20.7 1.1E+02 0.0024 28.8 3.6 46 115-165 21-68 (240)
323 PLN02827 Alcohol dehydrogenase 20.7 1.7E+02 0.0038 28.9 5.1 36 116-153 192-231 (378)
324 cd01483 E1_enzyme_family Super 20.6 99 0.0021 26.1 3.0 42 120-166 1-44 (143)
325 TIGR00006 S-adenosyl-methyltra 20.6 3.3E+02 0.0071 27.0 6.9 40 116-155 19-59 (305)
326 PRK06124 gluconate 5-dehydroge 20.6 5E+02 0.011 23.4 7.9 39 114-153 7-48 (256)
327 PRK08213 gluconate 5-dehydroge 20.6 5.3E+02 0.011 23.4 8.1 37 115-153 9-49 (259)
328 KOG1253 tRNA methyltransferase 20.4 38 0.00082 35.8 0.3 48 116-164 108-157 (525)
329 cd00757 ThiF_MoeB_HesA_family 20.3 1.2E+02 0.0026 28.0 3.7 47 115-166 18-66 (228)
330 PF05050 Methyltransf_21: Meth 20.3 2E+02 0.0044 23.9 4.9 37 123-160 1-42 (167)
331 cd08239 THR_DH_like L-threonin 20.3 1.9E+02 0.0041 27.6 5.2 36 116-153 162-201 (339)
332 PRK12475 thiamine/molybdopteri 20.2 79 0.0017 31.5 2.6 38 113-150 19-58 (338)
333 PRK14027 quinate/shikimate deh 20.1 2.6E+02 0.0056 27.1 6.1 39 115-153 124-164 (283)
No 1
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=7.7e-36 Score=283.32 Aligned_cols=271 Identities=38% Similarity=0.520 Sum_probs=213.4
Q ss_pred hhhhhhcCCCCCCCCCCcceeeeecCCCCCCCCcc--cccccccccccccc---cCceeeeccceeeccccchhhhcccc
Q 018716 5 SLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPA--VEILPSKVAHLYKY---AGDNVDLQAISMFKGKVSVADIIGFT 79 (351)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~e~l~~~~~~~~k~---~~~~v~~~g~~l~~g~~~~~~~~g~~ 79 (351)
.+.+||++++.|-..+. ++.. .++...++|+|+ +|..+++.+..-+. ..+...+...+|+++.++..+++++.
T Consensus 2 ~~~~~~~~d~~~~~~~~-~~~e-~s~~~~~~~~~~~~~e~~~~~~~~~~~~~~f~~~~l~~g~~~l~~~~~~~~~i~~~~ 79 (282)
T KOG2920|consen 2 VLTSQLFADLEPVGEGL-GFFE-SSEKFLPSPPPPHPVEHIRSKLTIGRKSSGFDIKLLLVGSHTLWKHLDSIEEIILLN 79 (282)
T ss_pred cccccccCCCccccccc-cccc-ccccccCCCCCccccccchhhcccccccccchhhhhhhhHHHHhhcccccchhhccc
Confidence 56789999998855443 5555 677767777777 99999998765563 33455566678898999998888889
Q ss_pred CCCCCCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHH
Q 018716 80 GSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVP 159 (351)
Q Consensus 80 ~~dl~~g~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~ 159 (351)
.+|+++++||||+|+|+++.+|+.++...+ ..+..+.+|||||||||+|++|++++..|+..++++|+|.++++..+.|
T Consensus 80 ~sDl~p~vyEGg~k~wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~p 158 (282)
T KOG2920|consen 80 HSDLVPGVYEGGLKLWECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLP 158 (282)
T ss_pred ccccCCceeecceEEeecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeeccc
Confidence 999999999999999999999999999886 4567899999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcc
Q 018716 160 NVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSI 239 (351)
Q Consensus 160 Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~ 239 (351)
|+.+|..... .|.+...+...+.++
T Consensus 159 n~~~~~~~~~---------------------------~~~e~~~~~~i~~s~---------------------------- 183 (282)
T KOG2920|consen 159 NILVNSHAGV---------------------------EEKENHKVDEILNSL---------------------------- 183 (282)
T ss_pred ceecchhhhh---------------------------hhhhcccceeccccc----------------------------
Confidence 9999987542 133322211111110
Q ss_pred cccCCcccccccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchH
Q 018716 240 IGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAA 319 (351)
Q Consensus 240 i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~ 319 (351)
++ +|. .+. ....+||+|++||+||++..++.++...+.+|.+++|++|+|+|++||||||++
T Consensus 184 ------------l~---dg~-~~~--t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~yFgVgg~i 245 (282)
T KOG2920|consen 184 ------------LS---DGV-FNH--TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLYFGVGGGI 245 (282)
T ss_pred ------------cc---cch-hhh--ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhHhhccCcCcch
Confidence 00 121 000 112599999999999999999999866667787799999999999999999999
Q ss_pred HHHH-HhhhhcC---ceeeEEeeecCCcceeeeecC
Q 018716 320 RHLR-SLVDEEG---IFGAHLIKEMTDRDIWKFFLK 351 (351)
Q Consensus 320 ~~F~-~~ve~~G---~~~~~~v~e~~d~~i~~~~~~ 351 (351)
.+|. +.|.+.. .-+++++.+...|.||.+.+|
T Consensus 246 ~~f~~~~~~~~d~~~~~~~~~i~~~v~r~i~~~~~~ 281 (282)
T KOG2920|consen 246 EEFNSKLMFDEDVFQISEAKLIRETVKRSILTIEFK 281 (282)
T ss_pred hhhcccccccCCccccccceehhhcCceeEEEEEec
Confidence 9994 5555544 347778889999999999876
No 2
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.94 E-value=7.1e-27 Score=209.31 Aligned_cols=154 Identities=30% Similarity=0.412 Sum_probs=97.9
Q ss_pred CCcccchhHHHHHHHHhhhhhc--CCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716 90 GFLKCWESSIDLVNVLKHEIRD--GQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLE 166 (351)
Q Consensus 90 gG~k~Weas~~L~~~L~~~~~~--~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~ 166 (351)
.|.++|++++.|++||.+.... ....+++++|||||||+|++||++++. +..+|++||+++ +++. +..|+.+|..
T Consensus 16 ~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~-l~~Ni~~N~~ 93 (173)
T PF10294_consen 16 TGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLEL-LRRNIELNGS 93 (173)
T ss_dssp -------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHH-HHHHHHTT--
T ss_pred CcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHH-HHHHHHhccc
Confidence 5778999999999999985311 234689999999999999999999987 777999999999 6643 3455555542
Q ss_pred HhhhhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 018716 167 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS 246 (351)
Q Consensus 167 ~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~ 246 (351)
. ...+|.+..+||++... . ++
T Consensus 94 ~-------------------~~~~v~v~~L~Wg~~~~--~--------------------~~------------------ 114 (173)
T PF10294_consen 94 L-------------------LDGRVSVRPLDWGDELD--S--------------------DL------------------ 114 (173)
T ss_dssp -------------------------EEEE--TTS-HH--H--------------------HH------------------
T ss_pred c-------------------ccccccCcEEEecCccc--c--------------------cc------------------
Confidence 1 13467888999987310 0 00
Q ss_pred cccccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhh
Q 018716 247 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV 326 (351)
Q Consensus 247 ~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~v 326 (351)
....+||+||||||+|+++.+++|+++|+++|+ ++|.+|+++++|+ ...++|++++
T Consensus 115 -------------------~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~-~~~~vl~~~~~R~----~~~~~F~~~~ 170 (173)
T PF10294_consen 115 -------------------LEPHSFDVILASDVLYDEELFEPLVRTLKRLLK-PNGKVLLAYKRRR----KSEQEFFDRL 170 (173)
T ss_dssp -------------------HS-SSBSEEEEES--S-GGGHHHHHHHHHHHBT-T-TTEEEEEE-S-----TGGCHHHHHH
T ss_pred -------------------cccccCCEEEEecccchHHHHHHHHHHHHHHhC-CCCEEEEEeCEec----HHHHHHHHHh
Confidence 124689999999999999999999999999997 7777999999883 3578899998
Q ss_pred hh
Q 018716 327 DE 328 (351)
Q Consensus 327 e~ 328 (351)
++
T Consensus 171 ~k 172 (173)
T PF10294_consen 171 KK 172 (173)
T ss_dssp --
T ss_pred hh
Confidence 76
No 3
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=5.1e-20 Score=162.76 Aligned_cols=170 Identities=26% Similarity=0.378 Sum_probs=128.4
Q ss_pred CCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEccc-CCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716 89 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCG-YGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLE 166 (351)
Q Consensus 89 ~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcG-tGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~ 166 (351)
+|...+||+..+|+.++.+.. ..++|++|||||.| |||.|+.+|. ...+.|.+||.|++.+ .|++.-..
T Consensus 5 tgnvciwpseeala~~~l~~~----n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-----rnv~ki~~ 75 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRDP----NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-----RNVEKIRN 75 (201)
T ss_pred CCcEEecccHHHHHHHHHhch----hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-----HHHHHHHh
Confidence 466789999999999999874 45899999999999 7999988774 4567899999999887 45554333
Q ss_pred HhhhhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 018716 167 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS 246 (351)
Q Consensus 167 ~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~ 246 (351)
.|.. +.. .+|.+ +.|..
T Consensus 76 ~n~~-------s~~--------tsc~v--lrw~~---------------------------------------------- 92 (201)
T KOG3201|consen 76 SNMA-------SSL--------TSCCV--LRWLI---------------------------------------------- 92 (201)
T ss_pred cccc-------ccc--------ceehh--hHHHH----------------------------------------------
Confidence 2210 111 12222 22211
Q ss_pred cccccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhh
Q 018716 247 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV 326 (351)
Q Consensus 247 ~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~v 326 (351)
|+.. .......||+|++|||+|..+..++|+++|+.+|+ |.|.+++-+.|| |.+.++|.+.+
T Consensus 93 -----------~~aq--sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~-p~g~Al~fsPRR----g~sL~kF~de~ 154 (201)
T KOG3201|consen 93 -----------WGAQ--SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLR-PSGRALLFSPRR----GQSLQKFLDEV 154 (201)
T ss_pred -----------hhhH--HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhC-cccceeEecCcc----cchHHHHHHHH
Confidence 1111 11245689999999999999999999999999997 889899888877 67899999999
Q ss_pred hhcCceeeEEeeecCCcceeeeec
Q 018716 327 DEEGIFGAHLIKEMTDRDIWKFFL 350 (351)
Q Consensus 327 e~~G~~~~~~v~e~~d~~i~~~~~ 350 (351)
+..| |.+.+ .+..|..||+++.
T Consensus 155 ~~~g-f~v~l-~enyde~iwqrh~ 176 (201)
T KOG3201|consen 155 GTVG-FTVCL-EENYDEAIWQRHG 176 (201)
T ss_pred Hhce-eEEEe-cccHhHHHHHHHH
Confidence 9999 46664 7778999998864
No 4
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.61 E-value=1.3e-15 Score=138.46 Aligned_cols=159 Identities=21% Similarity=0.319 Sum_probs=113.3
Q ss_pred CCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 86 SKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 86 g~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
-.|| ...|.+++.|++|+..++ ...+||+|||+|+|.||++|++++.|++.|+.+|+.+... .|+.+|.
T Consensus 54 Ppfw--a~~WagG~~lAR~i~~~P----etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-----~ai~lNa 122 (218)
T COG3897 54 PPFW--AFAWAGGQVLARYIDDHP----ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-----QAIRLNA 122 (218)
T ss_pred chHH--HHHHhhhHHHHHHHhcCc----cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-----HHhhcch
Confidence 4566 448999999999999874 5689999999999999999999999999999999998654 7888888
Q ss_pred HHhhhhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCc
Q 018716 166 EQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSS 245 (351)
Q Consensus 166 ~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~ 245 (351)
.+|- -.+.+ .+.|. +
T Consensus 123 ~ang-------------------v~i~~------------------------------~~~d~-----------~----- 137 (218)
T COG3897 123 AANG-------------------VSILF------------------------------THADL-----------I----- 137 (218)
T ss_pred hhcc-------------------ceeEE------------------------------eeccc-----------c-----
Confidence 7541 01111 11111 1
Q ss_pred ccccccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHh
Q 018716 246 SRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSL 325 (351)
Q Consensus 246 ~~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ 325 (351)
-....+|+||++|++|+.+....|+.++.+|..++..++..-..|.|... ...+|+..
T Consensus 138 --------------------g~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk--~~l~~~a~ 195 (218)
T COG3897 138 --------------------GSPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPK--KRLEFLAI 195 (218)
T ss_pred --------------------CCCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCCch--hhhhhhhh
Confidence 13578999999999999999999999988887644434433355666543 33444433
Q ss_pred hhhcCceeeEEeeecCC-----cceeee
Q 018716 326 VDEEGIFGAHLIKEMTD-----RDIWKF 348 (351)
Q Consensus 326 ve~~G~~~~~~v~e~~d-----~~i~~~ 348 (351)
- ++....+..| ..||.|
T Consensus 196 y------qvp~~~~~ed~~vkrttV~~~ 217 (218)
T COG3897 196 Y------QVPMFRELEDAAVKRTTVWRF 217 (218)
T ss_pred c------cCcccccccCcceeeeeeeec
Confidence 2 2333344433 667776
No 5
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.59 E-value=1.4e-14 Score=136.99 Aligned_cols=177 Identities=25% Similarity=0.236 Sum_probs=118.7
Q ss_pred cccchhHHHHHHHHhhhhhcC-----CCCCC--CCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 92 LKCWESSIDLVNVLKHEIRDG-----QLSFR--GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 92 ~k~Weas~~L~~~L~~~~~~~-----~~~~~--~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
+.+|+++-.++.++.....+. ...++ .++|||||+|||++|+.+++....+|+.||...-+. . +..|...|
T Consensus 54 ~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~-~-L~~~~~~~ 131 (248)
T KOG2793|consen 54 AYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVE-N-LKFNRDKN 131 (248)
T ss_pred eEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHH-H-HHHhhhhh
Confidence 579999999999998774311 11233 457999999999999999984445999999887442 2 23444333
Q ss_pred HHHhhhhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCC
Q 018716 165 LEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDS 244 (351)
Q Consensus 165 ~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~ 244 (351)
.... +++..+|.+..++|++.+.. + + .
T Consensus 132 ~~~l----------------~~~g~~v~v~~L~Wg~~~~~-----------------~-----~-----------~---- 158 (248)
T KOG2793|consen 132 NIAL----------------NQLGGSVIVAILVWGNALDV-----------------S-----F-----------R---- 158 (248)
T ss_pred hhhh----------------hhcCCceeEEEEecCCcccH-----------------h-----h-----------c----
Confidence 3221 12344788889999986421 0 0 0
Q ss_pred cccccccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHH
Q 018716 245 SSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRS 324 (351)
Q Consensus 245 ~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~ 324 (351)
....+|+||+|||+|++++++.|+.+|..+|. .+++++++++.|.-- .-..+.-
T Consensus 159 ----------------------~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~-~~~~i~l~~~lr~~~---~~~~~~~ 212 (248)
T KOG2793|consen 159 ----------------------LPNPFDLILASDVVYEEESFEGLVKTLAFLLA-KDGTIFLAYPLRRDA---AWEIEVL 212 (248)
T ss_pred ----------------------cCCcccEEEEeeeeecCCcchhHHHHHHHHHh-cCCeEEEEEecccch---HHHHHHH
Confidence 01118999999999999999999999999987 566999998776410 0111222
Q ss_pred hhh-hcCceeeEEeeecCCcceeeee
Q 018716 325 LVD-EEGIFGAHLIKEMTDRDIWKFF 349 (351)
Q Consensus 325 ~ve-~~G~~~~~~v~e~~d~~i~~~~ 349 (351)
.++ ..+.|.+......+|++-|..+
T Consensus 213 ~~~~~~~~~~v~~~~~~~~~~~~~i~ 238 (248)
T KOG2793|consen 213 LFKKDLKIFDVVQESFFKDQESFRIG 238 (248)
T ss_pred HhhhhhccceeeeEeccCcceeeeee
Confidence 222 2455677777777777776654
No 6
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.17 E-value=1.1e-09 Score=107.55 Aligned_cols=152 Identities=22% Similarity=0.265 Sum_probs=102.9
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 173 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~ 173 (351)
-|.+.+.....+.+. ..+.+++|||+|||+|..++.++..|+..|++.|.++.++.. .|...+...
T Consensus 104 ew~s~~k~~~l~~~l-----~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q---~~a~~~~~~------ 169 (322)
T PRK15068 104 EWRSDWKWDRVLPHL-----SPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQ---FEAVRKLLG------ 169 (322)
T ss_pred eehHHhHHHHHHHhh-----CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHH---HHHHHHhcC------
Confidence 576654433332221 246889999999999999999888888789999999987632 222211110
Q ss_pred cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716 174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 253 (351)
Q Consensus 174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls 253 (351)
...+++|..++.++.+
T Consensus 170 -------------~~~~i~~~~~d~e~lp--------------------------------------------------- 185 (322)
T PRK15068 170 -------------NDQRAHLLPLGIEQLP--------------------------------------------------- 185 (322)
T ss_pred -------------CCCCeEEEeCCHHHCC---------------------------------------------------
Confidence 0124666554432210
Q ss_pred CchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe-------------ccccccc-----
Q 018716 254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT-------------KKNYVGF----- 315 (351)
Q Consensus 254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~-------------K~~yfgv----- 315 (351)
....||+|++..++|+......+++-+.++|+ |+|.+++.. ..+|...
T Consensus 186 -------------~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~ 251 (322)
T PRK15068 186 -------------ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLETLVIDGDENTVLVPGDRYAKMRNVYF 251 (322)
T ss_pred -------------CcCCcCEEEECChhhccCCHHHHHHHHHHhcC-CCcEEEEEEEEecCCCccccCchhHHhcCcccee
Confidence 14579999999999999999999999999997 899887642 1223221
Q ss_pred cchHHHHHHhhhhcCceeeEEe
Q 018716 316 NNAARHLRSLVDEEGIFGAHLI 337 (351)
Q Consensus 316 ~gg~~~F~~~ve~~G~~~~~~v 337 (351)
-.+...+.+.+++.||-..+++
T Consensus 252 lps~~~l~~~L~~aGF~~i~~~ 273 (322)
T PRK15068 252 IPSVPALKNWLERAGFKDVRIV 273 (322)
T ss_pred CCCHHHHHHHHHHcCCceEEEE
Confidence 1267788999999997555554
No 7
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.13 E-value=2.5e-09 Score=95.52 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=37.6
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL 162 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~ 162 (351)
.++++|||+|||+|..++.++..+. +|+++|+++++++. +..|+.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-a~~~~~ 62 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKE-LRENAK 62 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHH-HHHHHH
Confidence 4668999999999999999988776 89999999999865 345554
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.12 E-value=1.2e-09 Score=88.92 Aligned_cols=106 Identities=23% Similarity=0.301 Sum_probs=74.3
Q ss_pred CCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716 117 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 195 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~ 195 (351)
++.+|||||||+|..++.+++ ....+|++.|+++++++. .+.|.... ...+++++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~i~~~~ 58 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEI-----ARERAAEE-----------------GLSDRITFVQ 58 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHH-----HHHHHHHT-----------------TTTTTEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHH-----HHHHHHhc-----------------CCCCCeEEEE
Confidence 578999999999999999997 234589999999999865 23333211 1245788887
Q ss_pred ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716 196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 275 (351)
Q Consensus 196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL 275 (351)
+|+ ... | ....+||+|+
T Consensus 59 ~d~-~~~-------------------------------------------------------~-------~~~~~~D~v~ 75 (112)
T PF12847_consen 59 GDA-EFD-------------------------------------------------------P-------DFLEPFDLVI 75 (112)
T ss_dssp SCC-HGG-------------------------------------------------------T-------TTSSCEEEEE
T ss_pred Ccc-ccC-------------------------------------------------------c-------ccCCCCCEEE
Confidence 776 210 0 1235699999
Q ss_pred Eec-ccc--C-ccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716 276 LTE-IPY--S-VTSLKKLYLLIKKCLRPPYGVVYLAT 308 (351)
Q Consensus 276 asD-viY--~-~~~~~~L~~~l~~~L~~p~gv~ylA~ 308 (351)
... +.. . .+....+++.+.++|+ |+|++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLK-PGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 999 332 1 1345667888888897 899998864
No 9
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.11 E-value=4.5e-09 Score=93.55 Aligned_cols=60 Identities=25% Similarity=0.436 Sum_probs=47.5
Q ss_pred hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCC-EEEEEcCChHHHHhhhHHHHHHH
Q 018716 96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~-~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
.++..|++++... ++++|||||||+|..|+.+++.+.. +|+++|+++.+++. +..|+..|
T Consensus 18 ~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~-a~~n~~~n 78 (170)
T PF05175_consen 18 AGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALEL-AKRNAERN 78 (170)
T ss_dssp HHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHH-HHHHHHhc
Confidence 4666888888754 6789999999999999999986654 79999999999854 34555544
No 10
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.11 E-value=3.3e-09 Score=103.99 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=101.9
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 173 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~ 173 (351)
.|.+.+....++.+. ...++++|||+|||+|...+.++..|+..|++.|.++.|+... ..++....
T Consensus 103 e~~s~~~~~~~l~~l-----~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~------- 168 (314)
T TIGR00452 103 EWRSDIKWDRVLPHL-----SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLD------- 168 (314)
T ss_pred HHHHHHHHHHHHHhc-----CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhc-------
Confidence 577665555555432 3478999999999999998888878887899999999887431 11111110
Q ss_pred cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716 174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 253 (351)
Q Consensus 174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls 253 (351)
...++++..++.++.
T Consensus 169 -------------~~~~v~~~~~~ie~l---------------------------------------------------- 183 (314)
T TIGR00452 169 -------------NDKRAILEPLGIEQL---------------------------------------------------- 183 (314)
T ss_pred -------------cCCCeEEEECCHHHC----------------------------------------------------
Confidence 012344433222110
Q ss_pred CchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEec--------------------cccc
Q 018716 254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK--------------------KNYV 313 (351)
Q Consensus 254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K--------------------~~yf 313 (351)
.....||+|++..++|+.......++.++++|+ |+|.+++..- ..||
T Consensus 184 ------------p~~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~f 250 (314)
T TIGR00452 184 ------------HELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYF 250 (314)
T ss_pred ------------CCCCCcCEEEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEEEEecCccccccCchHHHHhcccccc
Confidence 012479999999999999999899999999997 8998886421 0122
Q ss_pred cccchHHHHHHhhhhcCceeeEEee
Q 018716 314 GFNNAARHLRSLVDEEGIFGAHLIK 338 (351)
Q Consensus 314 gv~gg~~~F~~~ve~~G~~~~~~v~ 338 (351)
..+.......+++.||-.++++.
T Consensus 251 --lpS~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 251 --IPSVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred --CCCHHHHHHHHHHCCCeEEEEEe
Confidence 22567778889999986666543
No 11
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3.6e-09 Score=102.78 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=54.8
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
.-+......++|.+.. .++++|||+|||+|+++|++++.|+++|+++|++|..++- ++.|+.+|.
T Consensus 145 ~HpTT~lcL~~Le~~~------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~a-a~eNa~~N~ 209 (300)
T COG2264 145 THPTTSLCLEALEKLL------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEA-ARENARLNG 209 (300)
T ss_pred CChhHHHHHHHHHHhh------cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHH-HHHHHHHcC
Confidence 4566666667776653 5899999999999999999999999999999999999864 678888884
No 12
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.01 E-value=6.9e-09 Score=100.90 Aligned_cols=65 Identities=26% Similarity=0.302 Sum_probs=52.8
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
.-+......++|.+. ..++++|||+|||+|+++|+|++.|+++|++.|+++..++. ++.|+.+|.
T Consensus 144 ~H~TT~lcl~~l~~~------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~-a~~N~~~N~ 208 (295)
T PF06325_consen 144 HHPTTRLCLELLEKY------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEA-ARENAELNG 208 (295)
T ss_dssp HCHHHHHHHHHHHHH------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHH-HHHHHHHTT
T ss_pred CCHHHHHHHHHHHHh------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHH-HHHHHHHcC
Confidence 467777777788766 36789999999999999999999999999999999988753 456666663
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.01 E-value=2.3e-08 Score=98.66 Aligned_cols=138 Identities=20% Similarity=0.253 Sum_probs=94.4
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 194 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~ 194 (351)
.++++|||+|||+|..++.++.. |+ +|++.|+++.+++.. +.|.... .+..++.|.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a-----~~~~~~~-----------------g~~~~v~~~ 173 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARA-----NALAAAQ-----------------GLSDKVSFQ 173 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHH-----HHHHHhc-----------------CCCCceEEE
Confidence 46789999999999999888864 54 899999999988542 2222211 122356666
Q ss_pred eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716 195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 274 (351)
Q Consensus 195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI 274 (351)
.+|..+.+ ..++.||+|
T Consensus 174 ~~D~~~~~---------------------------------------------------------------~~~~~FD~V 190 (340)
T PLN02244 174 VADALNQP---------------------------------------------------------------FEDGQFDLV 190 (340)
T ss_pred EcCcccCC---------------------------------------------------------------CCCCCccEE
Confidence 55543211 124689999
Q ss_pred EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecc-------------------------ccccccchHHHHHHhhhhc
Q 018716 275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------------------------NYVGFNNAARHLRSLVDEE 329 (351)
Q Consensus 275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~-------------------------~yfgv~gg~~~F~~~ve~~ 329 (351)
++.+++.+......+++-+.++|+ |+|.++++.-. +|+.......++.+.+++.
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~a 269 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVAA-PGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESL 269 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHcC-CCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHC
Confidence 999999988888889999999997 89998885310 1111112577889999999
Q ss_pred CceeeEEeeecC
Q 018716 330 GIFGAHLIKEMT 341 (351)
Q Consensus 330 G~~~~~~v~e~~ 341 (351)
|+-.++ +.+.+
T Consensus 270 Gf~~v~-~~d~s 280 (340)
T PLN02244 270 GLQDIK-TEDWS 280 (340)
T ss_pred CCCeeE-eeeCc
Confidence 974443 34433
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.96 E-value=1.1e-08 Score=88.70 Aligned_cols=108 Identities=24% Similarity=0.388 Sum_probs=80.2
Q ss_pred CCCEEEEEcccCCHHHHHHH-HcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716 117 RGKRVLELSCGYGLPGIFAC-LKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 194 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa-~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~ 194 (351)
++.+|||+|||+|..++.++ ..+ ..+|++.|++++|++.. +.+.... .+. +++|.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a-----~~~~~~~-----------------~~~-ni~~~ 59 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYA-----KKRAKEL-----------------GLD-NIEFI 59 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHH-----HHHHHHT-----------------TST-TEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHh-----hcccccc-----------------ccc-ccceE
Confidence 57899999999999999988 432 45899999999999653 2222111 122 67887
Q ss_pred eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716 195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 274 (351)
Q Consensus 195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI 274 (351)
.+|+.+.+. . -..+||+|
T Consensus 60 ~~d~~~l~~-------------------------------------------------------------~-~~~~~D~I 77 (152)
T PF13847_consen 60 QGDIEDLPQ-------------------------------------------------------------E-LEEKFDII 77 (152)
T ss_dssp ESBTTCGCG-------------------------------------------------------------C-SSTTEEEE
T ss_pred Eeehhcccc-------------------------------------------------------------c-cCCCeeEE
Confidence 777654210 0 01689999
Q ss_pred EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecc
Q 018716 275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK 310 (351)
Q Consensus 275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~ 310 (351)
+...++|.......+++-+.++|+ ++|++++..-.
T Consensus 78 ~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred EEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 999999999999999999999997 89999987644
No 15
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.96 E-value=3.7e-09 Score=103.96 Aligned_cols=106 Identities=20% Similarity=0.308 Sum_probs=77.1
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 195 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~ 195 (351)
+++.+|||+|||+|..++.++..|+ +|++.|.++++++.. +.+.... + ...++.+..
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~A-----r~~~~~~----------~-------~~~~i~~~~ 186 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIA-----RLHADMD----------P-------VTSTIEYLC 186 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHH-----HHHHHhc----------C-------cccceeEEe
Confidence 5788999999999999998888775 899999999998542 1221100 0 011344433
Q ss_pred ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716 196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 275 (351)
Q Consensus 196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL 275 (351)
++-++. ....+.||+|+
T Consensus 187 ~dae~l---------------------------------------------------------------~~~~~~FD~Vi 203 (322)
T PLN02396 187 TTAEKL---------------------------------------------------------------ADEGRKFDAVL 203 (322)
T ss_pred cCHHHh---------------------------------------------------------------hhccCCCCEEE
Confidence 221100 01246899999
Q ss_pred EeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716 276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 308 (351)
Q Consensus 276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~ 308 (351)
+.+++++....+.+++.+.++|+ |+|.++++.
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist 235 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSALTI-PNGATVLST 235 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEE
Confidence 99999999999999999999997 999999874
No 16
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.95 E-value=1.9e-09 Score=101.36 Aligned_cols=126 Identities=25% Similarity=0.353 Sum_probs=89.5
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716 115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 194 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~ 194 (351)
.+.|++|||+|||.|+++.-+|+.|+ +|++.|.++.+++.. -..+ .++. +
T Consensus 57 ~l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~A--------k~ha-------~e~g-----------v--- 106 (243)
T COG2227 57 DLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVA--------KLHA-------LESG-----------V--- 106 (243)
T ss_pred CCCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHH--------HHhh-------hhcc-----------c---
Confidence 37999999999999999999999996 899999999776431 1100 0010 1
Q ss_pred eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716 195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 274 (351)
Q Consensus 195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI 274 (351)
..||..... +|+ ....++||+|
T Consensus 107 ~i~y~~~~~----------------------edl------------------------------------~~~~~~FDvV 128 (243)
T COG2227 107 NIDYRQATV----------------------EDL------------------------------------ASAGGQFDVV 128 (243)
T ss_pred cccchhhhH----------------------HHH------------------------------------HhcCCCccEE
Confidence 122322100 011 0123899999
Q ss_pred EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccc---------------cccchHHHHHHhhhhc
Q 018716 275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV---------------GFNNAARHLRSLVDEE 329 (351)
Q Consensus 275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yf---------------gv~gg~~~F~~~ve~~ 329 (351)
+..|++-+.+.-+.++..+.++++ |+|++++++-.+++ -+.+|+.++.++++..
T Consensus 129 ~cmEVlEHv~dp~~~~~~c~~lvk-P~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~ 197 (243)
T COG2227 129 TCMEVLEHVPDPESFLRACAKLVK-PGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPA 197 (243)
T ss_pred EEhhHHHccCCHHHHHHHHHHHcC-CCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHH
Confidence 999999999999999999999997 89999999644432 2456778877777653
No 17
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.93 E-value=3.5e-08 Score=95.21 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=47.6
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
..+......++|.+. ..++++|||+|||+|..++.+++.|+.+|+++|+++.+++. ++.|+..|
T Consensus 142 ~h~tt~l~l~~l~~~------~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~-a~~n~~~n 205 (288)
T TIGR00406 142 THPTTSLCLEWLEDL------DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVES-ARKNAELN 205 (288)
T ss_pred CCHHHHHHHHHHHhh------cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHHHHc
Confidence 345554444555443 24789999999999999999988888899999999999864 34555444
No 18
>PRK14967 putative methyltransferase; Provisional
Probab=98.91 E-value=4.2e-08 Score=90.82 Aligned_cols=54 Identities=33% Similarity=0.426 Sum_probs=42.8
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 97 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 97 as~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.+..|++++... ...++.+|||+|||+|..++.++..++.+|+++|+++.+++.
T Consensus 21 ds~~l~~~l~~~-----~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~ 74 (223)
T PRK14967 21 DTQLLADALAAE-----GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRS 74 (223)
T ss_pred cHHHHHHHHHhc-----ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 345677777543 124678999999999999999888776799999999998854
No 19
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.90 E-value=9.7e-08 Score=90.14 Aligned_cols=61 Identities=25% Similarity=0.358 Sum_probs=47.7
Q ss_pred chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHH
Q 018716 95 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL 162 (351)
Q Consensus 95 Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~ 162 (351)
.+....+.+.|... ..++++|||+|||+|..++.+++.|+.+|+++|+++.+++. ...|+.
T Consensus 103 h~tt~~~l~~l~~~------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~-A~~n~~ 163 (250)
T PRK00517 103 HPTTRLCLEALEKL------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEA-ARENAE 163 (250)
T ss_pred CHHHHHHHHHHHhh------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHHH
Confidence 66666677777654 24789999999999999999888888789999999999854 234443
No 20
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.88 E-value=3.1e-09 Score=101.00 Aligned_cols=111 Identities=22% Similarity=0.352 Sum_probs=77.3
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 195 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~ 195 (351)
+.|++|||+|||+||++.-+|+.|+ +|++.|.+++|++- +|.... ..|.... ...-++++..
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~v-------A~~h~~--------~dP~~~~--~~~y~l~~~~ 149 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEV-------ANEHKK--------MDPVLEG--AIAYRLEYED 149 (282)
T ss_pred cCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHH-------HHHhhh--------cCchhcc--ccceeeehhh
Confidence 5679999999999999999999996 89999999988753 232211 1111100 0000111100
Q ss_pred ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716 196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 275 (351)
Q Consensus 196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL 275 (351)
.+ + | ...++||.|+
T Consensus 150 ~~------------------------------------------~----------------------E--~~~~~fDaVv 163 (282)
T KOG1270|consen 150 TD------------------------------------------V----------------------E--GLTGKFDAVV 163 (282)
T ss_pred cc------------------------------------------h----------------------h--hcccccceee
Confidence 00 0 0 1245699999
Q ss_pred EeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc
Q 018716 276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN 311 (351)
Q Consensus 276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~ 311 (351)
++|++-+....+.+++.+-++|+ |+|..++++-.+
T Consensus 164 csevleHV~dp~~~l~~l~~~lk-P~G~lfittinr 198 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLK-PNGRLFITTINR 198 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhC-CCCceEeeehhh
Confidence 99999999999999999999997 899999986443
No 21
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.86 E-value=7e-08 Score=87.27 Aligned_cols=40 Identities=20% Similarity=0.466 Sum_probs=34.1
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~ 155 (351)
+++++|||+|||+|..++.++..+ ..+|++.|.++.+++.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~ 81 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAF 81 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHH
Confidence 468999999999999999887643 4589999999998854
No 22
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.86 E-value=2.1e-08 Score=78.12 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=67.4
Q ss_pred EEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeeccCCCC
Q 018716 122 LELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEEL 201 (351)
Q Consensus 122 LELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~ 201 (351)
||+|||+|.....++..+..+|+++|+++++++. .+.+.. ...+.+..+|....
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~-----~~~~~~---------------------~~~~~~~~~d~~~l 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQ-----ARKRLK---------------------NEGVSFRQGDAEDL 54 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHH-----HHHHTT---------------------TSTEEEEESBTTSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHH-----HHhccc---------------------ccCchheeehHHhC
Confidence 8999999999999887755699999999998743 222211 11233444433221
Q ss_pred cchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEEecccc
Q 018716 202 PTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPY 281 (351)
Q Consensus 202 ~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY 281 (351)
+ ..++.||+|++..+++
T Consensus 55 ~---------------------------------------------------------------~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 55 P---------------------------------------------------------------FPDNSFDVVFSNSVLH 71 (95)
T ss_dssp S---------------------------------------------------------------S-TT-EEEEEEESHGG
T ss_pred c---------------------------------------------------------------ccccccccccccccee
Confidence 1 1357899999999999
Q ss_pred CccCHHHHHHHHHHHcCCCCeEEEE
Q 018716 282 SVTSLKKLYLLIKKCLRPPYGVVYL 306 (351)
Q Consensus 282 ~~~~~~~L~~~l~~~L~~p~gv~yl 306 (351)
.-+..+.+++-+.+.|+ |+|++++
T Consensus 72 ~~~~~~~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEAALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp GSSHHHHHHHHHHHHEE-EEEEEEE
T ss_pred eccCHHHHHHHHHHHcC-cCeEEeC
Confidence 99899999999999997 8999875
No 23
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.84 E-value=1.8e-07 Score=86.45 Aligned_cols=116 Identities=25% Similarity=0.339 Sum_probs=79.8
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCC
Q 018716 101 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 180 (351)
Q Consensus 101 L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~ 180 (351)
..+++.... ...++++|||+|||+|..+..++..+. +|+++|.++.+++. ...|....
T Consensus 36 ~~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~-----a~~~~~~~------------ 93 (233)
T PRK05134 36 RLNYIREHA----GGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEV-----ARLHALES------------ 93 (233)
T ss_pred HHHHHHHhc----cCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHH-----HHHHHHHc------------
Confidence 345555543 235789999999999999988887765 79999999988743 23333211
Q ss_pred CCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhh
Q 018716 181 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWER 260 (351)
Q Consensus 181 ~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~ 260 (351)
...+.+...++...+
T Consensus 94 -------~~~~~~~~~~~~~~~---------------------------------------------------------- 108 (233)
T PRK05134 94 -------GLKIDYRQTTAEELA---------------------------------------------------------- 108 (233)
T ss_pred -------CCceEEEecCHHHhh----------------------------------------------------------
Confidence 002233222221100
Q ss_pred ccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716 261 ASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 308 (351)
Q Consensus 261 ~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~ 308 (351)
+ ...++||+|+++.++........+++.+.+.|+ |+|.++++.
T Consensus 109 --~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~ 151 (233)
T PRK05134 109 --A--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFST 151 (233)
T ss_pred --h--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEe
Confidence 0 123689999999999998888999999999997 899988863
No 24
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.84 E-value=1.6e-07 Score=85.64 Aligned_cols=127 Identities=24% Similarity=0.275 Sum_probs=83.3
Q ss_pred CCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716 117 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 195 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~ 195 (351)
++.+|||+|||+|..++.++. ....+|++.|.++++++.. ..|+..|. ++ ++++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A-~~~~~~~~---------------------l~-~i~~~~ 101 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFL-REVAAELG---------------------LK-NVTVVH 101 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHH-HHHHHHcC---------------------CC-CEEEEe
Confidence 388999999999999998775 3446899999999998653 33333321 11 255544
Q ss_pred ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716 196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 275 (351)
Q Consensus 196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL 275 (351)
+|-.+. .....||+|+
T Consensus 102 ~d~~~~----------------------------------------------------------------~~~~~fDlV~ 117 (187)
T PRK00107 102 GRAEEF----------------------------------------------------------------GQEEKFDVVT 117 (187)
T ss_pred ccHhhC----------------------------------------------------------------CCCCCccEEE
Confidence 332110 0135799999
Q ss_pred EeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCc-eeeEEeeecC
Q 018716 276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI-FGAHLIKEMT 341 (351)
Q Consensus 276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~-~~~~~v~e~~ 341 (351)
+.. -..++.+++.+.++|+ |+|++++..... ...++.+..+..|+ +...++.+++
T Consensus 118 ~~~----~~~~~~~l~~~~~~Lk-pGG~lv~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (187)
T PRK00107 118 SRA----VASLSDLVELCLPLLK-PGGRFLALKGRD------PEEEIAELPKALGGKVEEVIELTLP 173 (187)
T ss_pred Ecc----ccCHHHHHHHHHHhcC-CCeEEEEEeCCC------hHHHHHHHHHhcCceEeeeEEEecC
Confidence 864 2457788888888997 899988775433 34566666666776 3344444443
No 25
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.84 E-value=7.6e-08 Score=91.32 Aligned_cols=134 Identities=23% Similarity=0.349 Sum_probs=90.5
Q ss_pred CCCCEEEEEcccCCHHHHHHHH-cCC-CEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716 116 FRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 193 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~-~Ga-~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~ 193 (351)
-++.+|||+|||+|..++.++. .|. .+|+++|+++.+++.. +.|.... .. .++.+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A-----~~~~~~~-----------------g~-~~v~~ 132 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKA-----RANARKA-----------------GY-TNVEF 132 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHH-----HHHHHHc-----------------CC-CCEEE
Confidence 3688999999999998877664 354 4799999999998652 3333211 01 14555
Q ss_pred eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716 194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 273 (351)
Q Consensus 194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl 273 (351)
..+|+.+.+ ...+.||+
T Consensus 133 ~~~d~~~l~---------------------------------------------------------------~~~~~fD~ 149 (272)
T PRK11873 133 RLGEIEALP---------------------------------------------------------------VADNSVDV 149 (272)
T ss_pred EEcchhhCC---------------------------------------------------------------CCCCceeE
Confidence 555543211 12357999
Q ss_pred EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe---cc-----------ccccc---cchHHHHHHhhhhcCceeeEE
Q 018716 274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT---KK-----------NYVGF---NNAARHLRSLVDEEGIFGAHL 336 (351)
Q Consensus 274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~---K~-----------~yfgv---~gg~~~F~~~ve~~G~~~~~~ 336 (351)
|+..-+++.....+.+++.+.++|+ |+|++++.. .. .+.+. .-...++.+.+++.|+-..++
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLK-PGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence 9998888877788888999999997 899988852 11 11111 114678999999999765554
No 26
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.82 E-value=1.3e-07 Score=86.74 Aligned_cols=128 Identities=19% Similarity=0.195 Sum_probs=86.9
Q ss_pred CEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecc
Q 018716 119 KRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD 197 (351)
Q Consensus 119 krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gd 197 (351)
++|||+|||+|...+.++.. +..+|++.|+++++++. .+.|.... .+..++++..+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~-----a~~~~~~~-----------------gl~~~i~~~~~d 58 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEV-----GRERIRAL-----------------GLQGRIRIFYRD 58 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHhc-----------------CCCcceEEEecc
Confidence 58999999999988887754 33589999999988743 33333211 122345554443
Q ss_pred CCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEEe
Q 018716 198 WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLT 277 (351)
Q Consensus 198 W~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILas 277 (351)
.... ...+.||+|++.
T Consensus 59 ~~~~----------------------------------------------------------------~~~~~fD~I~~~ 74 (224)
T smart00828 59 SAKD----------------------------------------------------------------PFPDTYDLVFGF 74 (224)
T ss_pred cccC----------------------------------------------------------------CCCCCCCEeehH
Confidence 3210 012479999999
Q ss_pred ccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc--cccc--------cchHHHHHHhhhhcCcee
Q 018716 278 EIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN--YVGF--------NNAARHLRSLVDEEGIFG 333 (351)
Q Consensus 278 DviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~--yfgv--------~gg~~~F~~~ve~~G~~~ 333 (351)
+++++....+.+++.+.++|+ |+|.+++..-.. +-.. ..+..++.+.+++.|+-.
T Consensus 75 ~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~ 139 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLK-DGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRV 139 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeE
Confidence 999998889999999999997 899988863210 0000 124677888999998633
No 27
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.82 E-value=5.7e-08 Score=88.54 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=34.6
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.++++|||+|||+|..++.++..|. +|++.|+|+.+++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~ 67 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIAN 67 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 4678999999999999999998875 89999999999854
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.81 E-value=3.5e-08 Score=93.02 Aligned_cols=105 Identities=27% Similarity=0.287 Sum_probs=75.9
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 196 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g 196 (351)
++.+|||+|||+|..++.++..|. +|+++|++++|++.. +.|.... .+..++++..+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a-----~~~~~~~-----------------g~~~~v~~~~~ 100 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRA-----KQAAEAK-----------------GVSDNMQFIHC 100 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHH-----HHHHHhc-----------------CCccceEEEEc
Confidence 567999999999999999888775 899999999998642 3333211 01234555544
Q ss_pred cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716 197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 276 (351)
Q Consensus 197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa 276 (351)
|..+.+ ....+.||+|++
T Consensus 101 d~~~l~--------------------------------------------------------------~~~~~~fD~V~~ 118 (255)
T PRK11036 101 AAQDIA--------------------------------------------------------------QHLETPVDLILF 118 (255)
T ss_pred CHHHHh--------------------------------------------------------------hhcCCCCCEEEe
Confidence 432210 012467999999
Q ss_pred eccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716 277 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 307 (351)
Q Consensus 277 sDviY~~~~~~~L~~~l~~~L~~p~gv~ylA 307 (351)
..+++.......+++.+.++|+ |+|++.+.
T Consensus 119 ~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~ 148 (255)
T PRK11036 119 HAVLEWVADPKSVLQTLWSVLR-PGGALSLM 148 (255)
T ss_pred hhHHHhhCCHHHHHHHHHHHcC-CCeEEEEE
Confidence 9999988778888899999997 89988765
No 29
>PRK14968 putative methyltransferase; Provisional
Probab=98.81 E-value=5.7e-07 Score=79.58 Aligned_cols=59 Identities=29% Similarity=0.334 Sum_probs=44.9
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHH
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL 162 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~ 162 (351)
-++-+..|++++.. .++++|||+|||+|..++.++..+ .+|+++|+++++++. ...|+.
T Consensus 8 p~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~-a~~~~~ 66 (188)
T PRK14968 8 PAEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVEC-AKCNAK 66 (188)
T ss_pred cchhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHH-HHHHHH
Confidence 35666677776642 477899999999999999888775 589999999999854 234443
No 30
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.78 E-value=2e-07 Score=83.81 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=80.5
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 194 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~ 194 (351)
.++.+|||+|||+|..++.++..+ ..+|++.|.++.+++. ...|+..|. + .++++.
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~-a~~n~~~~~---------------------~-~~i~~~ 86 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRL-IKENRQRFG---------------------C-GNIDII 86 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHhC---------------------C-CCeEEE
Confidence 367899999999999999988643 3589999999998854 233443321 1 134443
Q ss_pred eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716 195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 274 (351)
Q Consensus 195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI 274 (351)
.+|... .....||+|
T Consensus 87 ~~d~~~-----------------------------------------------------------------~~~~~~D~v 101 (187)
T PRK08287 87 PGEAPI-----------------------------------------------------------------ELPGKADAI 101 (187)
T ss_pred ecCchh-----------------------------------------------------------------hcCcCCCEE
Confidence 332100 012468999
Q ss_pred EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCce
Q 018716 275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 332 (351)
Q Consensus 275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~ 332 (351)
+++-.. ..++.+++.+.++|+ |+|++++..-. .....++.+.+++.|+-
T Consensus 102 ~~~~~~---~~~~~~l~~~~~~Lk-~gG~lv~~~~~-----~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 102 FIGGSG---GNLTAIIDWSLAHLH-PGGRLVLTFIL-----LENLHSALAHLEKCGVS 150 (187)
T ss_pred EECCCc---cCHHHHHHHHHHhcC-CCeEEEEEEec-----HhhHHHHHHHHHHCCCC
Confidence 986432 346778888888897 89998775321 23467888899998863
No 31
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.77 E-value=1.1e-07 Score=96.03 Aligned_cols=126 Identities=22% Similarity=0.274 Sum_probs=87.3
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCC-Cceeee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLA-PSVHFY 194 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~-~~v~~~ 194 (351)
.++++|||+|||||..++.++..|+.+|++.|.++.+++. ...|+.+|.. . .++++.
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~-a~~N~~~Ngl---------------------~~~~v~~i 276 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDI-ARQNVELNKL---------------------DLSKAEFV 276 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHcCC---------------------CCCcEEEE
Confidence 4689999999999999998887788899999999999965 4566666631 1 246666
Q ss_pred eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716 195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 274 (351)
Q Consensus 195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI 274 (351)
.+|.-+. +. .+. ....+||+|
T Consensus 277 ~~D~~~~---l~--------------------------------------------------~~~------~~~~~fDlV 297 (396)
T PRK15128 277 RDDVFKL---LR--------------------------------------------------TYR------DRGEKFDVI 297 (396)
T ss_pred EccHHHH---HH--------------------------------------------------HHH------hcCCCCCEE
Confidence 6654221 00 000 123579999
Q ss_pred EEeccccCccC----------HHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhh
Q 018716 275 LLTEIPYSVTS----------LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDE 328 (351)
Q Consensus 275 LasDviY~~~~----------~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~ 328 (351)
+ .|-.|.... +..+.....++|+ |+|+++.++-.++. +...|++.+.+
T Consensus 298 i-lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~~----~~~~f~~~v~~ 355 (396)
T PRK15128 298 V-MDPPKFVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGLM----TSDLFQKIIAD 355 (396)
T ss_pred E-ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCcC----CHHHHHHHHHH
Confidence 8 788876654 4445555567786 89998887655443 46888888865
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.75 E-value=1e-07 Score=86.71 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=34.5
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.++.+|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~ 67 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIAS 67 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 3567999999999999999998875 89999999998854
No 33
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.74 E-value=6.1e-08 Score=83.05 Aligned_cols=64 Identities=16% Similarity=0.355 Sum_probs=49.1
Q ss_pred CCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccc-----------cccc-------chHHHHHHhhhh
Q 018716 267 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-----------VGFN-------NAARHLRSLVDE 328 (351)
Q Consensus 267 ~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~y-----------fgv~-------gg~~~F~~~ve~ 328 (351)
..+.||+|++.+++++......+++.|.++|+ |+|.+++..-.++ +... -...++.+++++
T Consensus 75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 153 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLK-PGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQ 153 (161)
T ss_dssp HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEE-EEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHH
T ss_pred cccchhhHhhHHHHhhcccHHHHHHHHHHhcC-CCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHH
Confidence 35799999999999999999999999999997 8999998753321 1110 145677777777
Q ss_pred cCc
Q 018716 329 EGI 331 (351)
Q Consensus 329 ~G~ 331 (351)
.|+
T Consensus 154 ~G~ 156 (161)
T PF13489_consen 154 AGF 156 (161)
T ss_dssp TTE
T ss_pred CCC
Confidence 775
No 34
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.73 E-value=1.7e-07 Score=87.88 Aligned_cols=99 Identities=25% Similarity=0.324 Sum_probs=71.5
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 196 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g 196 (351)
++.+|||+|||+|..+..++..|. +|++.|+++.|++.. +.|. ..+.+..+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a-----~~~~-----------------------~~~~~~~~ 92 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQA-----RQKD-----------------------AADHYLAG 92 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHH-----HhhC-----------------------CCCCEEEc
Confidence 568999999999998887777664 899999999988542 1110 01223334
Q ss_pred cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716 197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 276 (351)
Q Consensus 197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa 276 (351)
|.+..+ .....||+|++
T Consensus 93 d~~~~~---------------------------------------------------------------~~~~~fD~V~s 109 (251)
T PRK10258 93 DIESLP---------------------------------------------------------------LATATFDLAWS 109 (251)
T ss_pred CcccCc---------------------------------------------------------------CCCCcEEEEEE
Confidence 432211 12457999999
Q ss_pred eccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716 277 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 308 (351)
Q Consensus 277 sDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~ 308 (351)
+-++........++.-+.++|+ |+|.++++.
T Consensus 110 ~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWCGNLSTALRELYRVVR-PGGVVAFTT 140 (251)
T ss_pred CchhhhcCCHHHHHHHHHHHcC-CCeEEEEEe
Confidence 9988877788888888888997 899998874
No 35
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.72 E-value=5.2e-07 Score=82.55 Aligned_cols=105 Identities=26% Similarity=0.351 Sum_probs=74.5
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC--CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716 117 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 194 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~G--a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~ 194 (351)
++.+|||+|||+|..++.++..+ ..+|+++|+++.+++. .+.|...+ .+...+.+.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~-----a~~~~~~~-----------------~~~~~~~~~ 108 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAV-----GREKLRDL-----------------GLSGNVEFV 108 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHH-----HHHhhccc-----------------ccccCeEEE
Confidence 67899999999999998888655 3689999999988753 33333210 011234444
Q ss_pred eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716 195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 274 (351)
Q Consensus 195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI 274 (351)
.+|..+.+ ...+.||+|
T Consensus 109 ~~d~~~~~---------------------------------------------------------------~~~~~~D~I 125 (239)
T PRK00216 109 QGDAEALP---------------------------------------------------------------FPDNSFDAV 125 (239)
T ss_pred ecccccCC---------------------------------------------------------------CCCCCccEE
Confidence 44332210 123579999
Q ss_pred EEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716 275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 307 (351)
Q Consensus 275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA 307 (351)
+.+-++.+....+.+++.+.++|+ |+|++++.
T Consensus 126 ~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~ 157 (239)
T PRK00216 126 TIAFGLRNVPDIDKALREMYRVLK-PGGRLVIL 157 (239)
T ss_pred EEecccccCCCHHHHHHHHHHhcc-CCcEEEEE
Confidence 999998888889999999999997 88987764
No 36
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.71 E-value=1.3e-07 Score=90.93 Aligned_cols=39 Identities=23% Similarity=0.512 Sum_probs=34.3
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.++++|||+|||+|..++.++..|. +|++.|+|+.+++.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~ 157 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLEN 157 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 3556999999999999999998875 89999999999854
No 37
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.70 E-value=4.9e-07 Score=91.76 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHH
Q 018716 98 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVL 162 (351)
Q Consensus 98 s~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~ 162 (351)
...|++.+...+ .++.+|||+|||+|..++.++. ....+|+++|+|+.+++. .+.|+.
T Consensus 238 TE~LVe~aL~~l------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~-AreNa~ 296 (423)
T PRK14966 238 TEHLVEAVLARL------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET-ARKNAA 296 (423)
T ss_pred HHHHHHHhhhcc------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHH
Confidence 346677666542 2456999999999999998775 345689999999999965 344444
No 38
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.70 E-value=7e-07 Score=91.37 Aligned_cols=135 Identities=21% Similarity=0.288 Sum_probs=92.2
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 195 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~ 195 (351)
-++.+|||+|||+|..++.++.....+|++.|+++.+++.. +.|... ...++.|..
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A-----~~~~~~-------------------~~~~v~~~~ 320 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFA-----LERAIG-------------------RKCSVEFEV 320 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHH-----HHHhhc-------------------CCCceEEEE
Confidence 35789999999999998887753224899999999988542 222210 122466666
Q ss_pred ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716 196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 275 (351)
Q Consensus 196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL 275 (351)
+|+...+ ...+.||+|+
T Consensus 321 ~d~~~~~---------------------------------------------------------------~~~~~fD~I~ 337 (475)
T PLN02336 321 ADCTKKT---------------------------------------------------------------YPDNSFDVIY 337 (475)
T ss_pred cCcccCC---------------------------------------------------------------CCCCCEEEEE
Confidence 6554311 1235799999
Q ss_pred EeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc-----------cc---c-ccchHHHHHHhhhhcCceeeEEeee
Q 018716 276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-----------YV---G-FNNAARHLRSLVDEEGIFGAHLIKE 339 (351)
Q Consensus 276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~-----------yf---g-v~gg~~~F~~~ve~~G~~~~~~v~e 339 (351)
+.+++++....+.+++-+.+.|+ |+|.+++..... ++ | .-....++.+.+++.|+ ....+.+
T Consensus 338 s~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF-~~i~~~d 414 (475)
T PLN02336 338 SRDTILHIQDKPALFRSFFKWLK-PGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGF-DDVIAED 414 (475)
T ss_pred ECCcccccCCHHHHHHHHHHHcC-CCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCC-eeeeeec
Confidence 99999999999999999999997 899988863110 00 0 01246777888888886 3333343
No 39
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.69 E-value=3.2e-07 Score=83.95 Aligned_cols=128 Identities=23% Similarity=0.341 Sum_probs=87.4
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 173 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~ 173 (351)
.|........++.+.+........+.+|||+|||+|..+..++..+. +|+++|.++.+++. .+.|...+.
T Consensus 22 ~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~-----a~~~~~~~~---- 91 (224)
T TIGR01983 22 LHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEV-----AKLHAKKDP---- 91 (224)
T ss_pred HHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHH-----HHHHHHHcC----
Confidence 45555566677777764332235688999999999999888877765 69999999988743 333433110
Q ss_pred cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716 174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 253 (351)
Q Consensus 174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls 253 (351)
. .++++...|..+.
T Consensus 92 -------------~-~~~~~~~~d~~~~---------------------------------------------------- 105 (224)
T TIGR01983 92 -------------L-LKIEYRCTSVEDL---------------------------------------------------- 105 (224)
T ss_pred -------------C-CceEEEeCCHHHh----------------------------------------------------
Confidence 0 0233332222110
Q ss_pred CchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716 254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 308 (351)
Q Consensus 254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~ 308 (351)
. . ....+||+|++..+++.......+++.+.+.|+ ++|+++++.
T Consensus 106 -----~---~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~ 149 (224)
T TIGR01983 106 -----A---E--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLK-PGGILFFST 149 (224)
T ss_pred -----h---c--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEe
Confidence 0 0 013689999999999999999999999999997 889888764
No 40
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.68 E-value=8.9e-07 Score=82.13 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=43.0
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~ 155 (351)
-++.+..+.+.+.+.+. ..+++|||+|||+|..++.++.. ...+++++|+++.+++.
T Consensus 69 p~~~~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~ 126 (251)
T TIGR03534 69 PRPDTEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAV 126 (251)
T ss_pred CCCChHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 34555667777766531 24579999999999999988864 34589999999999864
No 41
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.68 E-value=7.6e-07 Score=86.73 Aligned_cols=155 Identities=21% Similarity=0.272 Sum_probs=103.3
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 173 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~ 173 (351)
-|.+..---+..-+. ..++||+|||+|||.|..+..++..|++.|+++|-++..+.+ -.+..+...
T Consensus 97 EWrSd~KW~rl~p~l-----~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~Q---F~~i~~~lg------ 162 (315)
T PF08003_consen 97 EWRSDWKWDRLLPHL-----PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQ---FEAIKHFLG------ 162 (315)
T ss_pred cccccchHHHHHhhh-----CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHH---HHHHHHHhC------
Confidence 466654333322221 368999999999999999999999999999999998865432 122222210
Q ss_pred cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716 174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 253 (351)
Q Consensus 174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls 253 (351)
....+.+..+-.+
T Consensus 163 -------------~~~~~~~lplgvE------------------------------------------------------ 175 (315)
T PF08003_consen 163 -------------QDPPVFELPLGVE------------------------------------------------------ 175 (315)
T ss_pred -------------CCccEEEcCcchh------------------------------------------------------
Confidence 0111222111000
Q ss_pred CchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEE-------------Eeccccccccc---
Q 018716 254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYL-------------ATKKNYVGFNN--- 317 (351)
Q Consensus 254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~yl-------------A~K~~yfgv~g--- 317 (351)
.....+.||+|++.=|+|+..+--..++.|+.+|+ ++|..++ .-+.+|-...+
T Consensus 176 ----------~Lp~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~F 244 (315)
T PF08003_consen 176 ----------DLPNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLR-PGGELVLETLVIDGDENTVLVPEDRYAKMRNVWF 244 (315)
T ss_pred ----------hccccCCcCEEEEeeehhccCCHHHHHHHHHHhhC-CCCEEEEEEeeecCCCceEEccCCcccCCCceEE
Confidence 00125689999999999999998888888998897 7775442 22444544433
Q ss_pred --hHHHHHHhhhhcCceeeEEeeec
Q 018716 318 --AARHLRSLVDEEGIFGAHLIKEM 340 (351)
Q Consensus 318 --g~~~F~~~ve~~G~~~~~~v~e~ 340 (351)
++......+++.||-.+++|...
T Consensus 245 iPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 245 IPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred eCCHHHHHHHHHHcCCceEEEecCc
Confidence 78889999999999999988754
No 42
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.67 E-value=2.9e-07 Score=92.49 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=37.7
Q ss_pred CCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 118 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
+.+|||||||+|..|+.++..+ ..+|+++|.|+.+++. .+.|+..|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~-A~~N~~~n 275 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVAS-SRLNVETN 275 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence 4699999999999999988753 4589999999999865 45666655
No 43
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.67 E-value=2.4e-07 Score=85.30 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=77.0
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 195 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~ 195 (351)
..+.+|||||||+|..|+.++..++.+|++.|.++.+++. ...|++.|. + .++.++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~-a~~Nl~~~~---------------------~-~~v~~~~ 108 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQ-LIKNLATLK---------------------A-GNARVVN 108 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHH-HHHHHHHhC---------------------C-CcEEEEE
Confidence 4678999999999999997665567799999999998864 345555442 1 1356655
Q ss_pred ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716 196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 275 (351)
Q Consensus 196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL 275 (351)
+|+.+. +. .....||+|+
T Consensus 109 ~D~~~~--------------------------------------------------------l~------~~~~~fDlV~ 126 (199)
T PRK10909 109 TNALSF--------------------------------------------------------LA------QPGTPHNVVF 126 (199)
T ss_pred chHHHH--------------------------------------------------------Hh------hcCCCceEEE
Confidence 554210 00 0123589886
Q ss_pred EeccccCccCHHHHHHHHHHH--cCCCCeEEEEEecc
Q 018716 276 LTEIPYSVTSLKKLYLLIKKC--LRPPYGVVYLATKK 310 (351)
Q Consensus 276 asDviY~~~~~~~L~~~l~~~--L~~p~gv~ylA~K~ 310 (351)
.|-.|.....+.+++.|... |. |++++|+-+-+
T Consensus 127 -~DPPy~~g~~~~~l~~l~~~~~l~-~~~iv~ve~~~ 161 (199)
T PRK10909 127 -VDPPFRKGLLEETINLLEDNGWLA-DEALIYVESEV 161 (199)
T ss_pred -ECCCCCCChHHHHHHHHHHCCCcC-CCcEEEEEecC
Confidence 78899998899998988873 55 89999998644
No 44
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.66 E-value=1.2e-06 Score=87.05 Aligned_cols=131 Identities=15% Similarity=0.087 Sum_probs=87.4
Q ss_pred CCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716 116 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 194 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~ 194 (351)
.++.+|||+|||+|..++.++. .+..+|+++|.+++|++.. +.|.. ..++++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A-----~~k~~---------------------~~~i~~i 165 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA-----KQKEP---------------------LKECKII 165 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HHhhh---------------------ccCCeEE
Confidence 3578999999999998887765 3445899999999988542 22211 0123443
Q ss_pred eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716 195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 274 (351)
Q Consensus 195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI 274 (351)
.+|..+.+ ...+.||+|
T Consensus 166 ~gD~e~lp---------------------------------------------------------------~~~~sFDvV 182 (340)
T PLN02490 166 EGDAEDLP---------------------------------------------------------------FPTDYADRY 182 (340)
T ss_pred eccHHhCC---------------------------------------------------------------CCCCceeEE
Confidence 33332210 124579999
Q ss_pred EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecc-------cccc----ccchHHHHHHhhhhcCceeeEE
Q 018716 275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------NYVG----FNNAARHLRSLVDEEGIFGAHL 336 (351)
Q Consensus 275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~-------~yfg----v~gg~~~F~~~ve~~G~~~~~~ 336 (351)
+++.++..-...+.+++-+.+.|+ |+|++++.... +++. ......++.+.+++.|+-.+++
T Consensus 183 Is~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 183 VSAGSIEYWPDPQRGIKEAYRVLK-IGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred EEcChhhhCCCHHHHHHHHHHhcC-CCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 999999877777888888999997 88988765211 1110 0125688889999999755543
No 45
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.66 E-value=8.3e-07 Score=87.18 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=35.1
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.++.+|||+|||+|..++.++..|. +|++.|+++.|++.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~ 181 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAE 181 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 4688999999999999999998875 89999999999864
No 46
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.64 E-value=4.3e-07 Score=86.54 Aligned_cols=128 Identities=19% Similarity=0.221 Sum_probs=84.6
Q ss_pred CCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716 116 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 194 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~ 194 (351)
.++.+|||+|||+|.....++. .+. +|++.|+++.+++.. +.+.. ...++.+.
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~~~a-----~~~~~--------------------~~~~i~~~ 104 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMVNIA-----KLRNS--------------------DKNKIEFE 104 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHHHHH-----HHHcC--------------------cCCceEEE
Confidence 4778999999999998887765 343 899999999987532 11110 01235554
Q ss_pred eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716 195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 274 (351)
Q Consensus 195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI 274 (351)
.+|..+. ....+.||+|
T Consensus 105 ~~D~~~~---------------------------------------------------------------~~~~~~FD~V 121 (263)
T PTZ00098 105 ANDILKK---------------------------------------------------------------DFPENTFDMI 121 (263)
T ss_pred ECCcccC---------------------------------------------------------------CCCCCCeEEE
Confidence 4433210 0124689999
Q ss_pred EEeccccCcc--CHHHHHHHHHHHcCCCCeEEEEEec--c---------------ccccccchHHHHHHhhhhcCceee
Q 018716 275 LLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATK--K---------------NYVGFNNAARHLRSLVDEEGIFGA 334 (351)
Q Consensus 275 LasDviY~~~--~~~~L~~~l~~~L~~p~gv~ylA~K--~---------------~yfgv~gg~~~F~~~ve~~G~~~~ 334 (351)
++.+++++.. ....+++-+.++|+ |+|.+++.-- . +.+. .....++.+.+++.|+-.+
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~Lk-PGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLK-PNGILLITDYCADKIENWDEEFKAYIKKRKYT-LIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEeccccccCcHHHHHHHHHhcCCC-CCCHHHHHHHHHHCCCCee
Confidence 9999987653 67788888889997 8999887621 0 0000 1245678888888887433
No 47
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.64 E-value=4.2e-07 Score=82.90 Aligned_cols=102 Identities=24% Similarity=0.340 Sum_probs=73.3
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 194 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~ 194 (351)
..+++|||+|||+|..+..++..+ ..+|+++|.++.+++.. ..+. .+++.+.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~-----~~~~----------------------~~~~~~~ 85 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQA-----KTKL----------------------SENVQFI 85 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHH-----HHhc----------------------CCCCeEE
Confidence 456899999999999998887654 34699999999887431 1110 1134444
Q ss_pred eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716 195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 274 (351)
Q Consensus 195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI 274 (351)
.+|....+ .....||+|
T Consensus 86 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v 102 (240)
T TIGR02072 86 CGDAEKLP---------------------------------------------------------------LEDSSFDLI 102 (240)
T ss_pred ecchhhCC---------------------------------------------------------------CCCCceeEE
Confidence 44332210 123579999
Q ss_pred EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716 275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 308 (351)
Q Consensus 275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~ 308 (351)
+++.++........+++-+.+.|+ |+|.++++.
T Consensus 103 i~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~ 135 (240)
T TIGR02072 103 VSNLALQWCDDLSQALSELARVLK-PGGLLAFST 135 (240)
T ss_pred EEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEe
Confidence 999999988888899999999997 899998863
No 48
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.64 E-value=4.3e-07 Score=87.46 Aligned_cols=117 Identities=25% Similarity=0.373 Sum_probs=75.8
Q ss_pred hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhcc
Q 018716 96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 174 (351)
Q Consensus 96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~ 174 (351)
++.....+++.+.. ..-+|.+|||||||.|-+.+.++.. |+ +|++..+|++-.+. ++.....
T Consensus 45 ~AQ~~k~~~~~~~~----~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~-----a~~~~~~------- 107 (273)
T PF02353_consen 45 EAQERKLDLLCEKL----GLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEY-----ARERIRE------- 107 (273)
T ss_dssp HHHHHHHHHHHTTT----T--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHH-----HHHHHHC-------
T ss_pred HHHHHHHHHHHHHh----CCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHH-----HHHHHHh-------
Confidence 33445555665552 3458999999999999999999975 76 89999999976643 2222210
Q ss_pred CCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 018716 175 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 254 (351)
Q Consensus 175 ~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~ 254 (351)
..+..+|.+...||.+
T Consensus 108 ----------~gl~~~v~v~~~D~~~------------------------------------------------------ 123 (273)
T PF02353_consen 108 ----------AGLEDRVEVRLQDYRD------------------------------------------------------ 123 (273)
T ss_dssp ----------STSSSTEEEEES-GGG------------------------------------------------------
T ss_pred ----------cCCCCceEEEEeeccc------------------------------------------------------
Confidence 0133355554444322
Q ss_pred chhhhhccccccCCCCccEEEEeccccCc--cCHHHHHHHHHHHcCCCCeEEEE
Q 018716 255 SRAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYL 306 (351)
Q Consensus 255 ~~~W~~~~e~~~~~~~~DlILasDviY~~--~~~~~L~~~l~~~L~~p~gv~yl 306 (351)
...+||-|++-+.+-+. ..++.+++.+.++|+ |+|++++
T Consensus 124 ------------~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~l 164 (273)
T PF02353_consen 124 ------------LPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVL 164 (273)
T ss_dssp ---------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEE
T ss_pred ------------cCCCCCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEE
Confidence 12389999999999987 789999999999997 9999885
No 49
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.63 E-value=2.5e-07 Score=99.65 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=42.3
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
.++++|||||||||..++.++..|+.+|++.|+|+.+++. .+.|+.+|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~-a~~N~~~n 584 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEW-AERNFALN 584 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence 4689999999999999999999888889999999999965 46777666
No 50
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.62 E-value=4.2e-07 Score=83.80 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=71.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 193 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~ 193 (351)
.++++|||+|||+|..+..++.. + ..+|++.|+++.+++.. ..|+..+. + +++.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a-~~~~~~~~---------------------~-~~v~~ 100 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVG-RQKVKDAG---------------------L-HNVEL 100 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHH-HHHHHhcC---------------------C-CceEE
Confidence 36789999999999999887753 3 34899999999998542 23322110 1 23555
Q ss_pred eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716 194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 273 (351)
Q Consensus 194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl 273 (351)
..+|....+ .....||+
T Consensus 101 ~~~d~~~~~---------------------------------------------------------------~~~~~fD~ 117 (231)
T TIGR02752 101 VHGNAMELP---------------------------------------------------------------FDDNSFDY 117 (231)
T ss_pred EEechhcCC---------------------------------------------------------------CCCCCccE
Confidence 444322110 12457999
Q ss_pred EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716 274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 307 (351)
Q Consensus 274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA 307 (351)
|+++.++-..+....+++.+.++|+ |+|.+++.
T Consensus 118 V~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~ 150 (231)
T TIGR02752 118 VTIGFGLRNVPDYMQVLREMYRVVK-PGGKVVCL 150 (231)
T ss_pred EEEecccccCCCHHHHHHHHHHHcC-cCeEEEEE
Confidence 9999887777777788888888897 89988764
No 51
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.62 E-value=2.9e-07 Score=84.32 Aligned_cols=125 Identities=19% Similarity=0.154 Sum_probs=80.5
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716 117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 195 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~ 195 (351)
.+.+|||+|||+|..++.++.. ...+|++.|+++.+++.+ ..|...+ .+ .++++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a-----~~~~~~~-----------------~~-~~v~~~~ 96 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKA-----LKKIEEE-----------------GL-TNLRLLC 96 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHH-----HHHHHHc-----------------CC-CCEEEEe
Confidence 5679999999999999887753 345899999999998653 3333221 01 2466666
Q ss_pred ccC-CCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716 196 GDW-EELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 274 (351)
Q Consensus 196 gdW-~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI 274 (351)
+|+ +..+. ......||+|
T Consensus 97 ~d~~~~l~~-------------------------------------------------------------~~~~~~~D~V 115 (202)
T PRK00121 97 GDAVEVLLD-------------------------------------------------------------MFPDGSLDRI 115 (202)
T ss_pred cCHHHHHHH-------------------------------------------------------------HcCccccceE
Confidence 665 32110 0123457777
Q ss_pred EEeccc-cCc-------cCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCc
Q 018716 275 LLTEIP-YSV-------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 331 (351)
Q Consensus 275 LasDvi-Y~~-------~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~ 331 (351)
+..-.. +.. ...+.+++-+.++|+ |+|++++++-... -....++.+++.|+
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~~~~-----~~~~~~~~~~~~g~ 174 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFATDWEG-----YAEYMLEVLSAEGG 174 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEcCCHH-----HHHHHHHHHHhCcc
Confidence 764211 110 124678888898997 8999999864332 35677888888885
No 52
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.61 E-value=6.5e-07 Score=85.25 Aligned_cols=108 Identities=25% Similarity=0.329 Sum_probs=74.3
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 193 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~ 193 (351)
.++.+|||+|||||...+.++.. + ..+|++.|++++|++.. ..+. +.... ....++++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A-~~r~--~~~~~-----------------~~~~~i~~ 131 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVA-ASRQ--ELKAK-----------------SCYKNIEW 131 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHH-HHHh--hhhhh-----------------ccCCCeEE
Confidence 46789999999999988877753 4 24899999999999642 1111 11000 01124555
Q ss_pred eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716 194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 273 (351)
Q Consensus 194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl 273 (351)
..+|..+.+ ..++.||+
T Consensus 132 ~~~d~~~lp---------------------------------------------------------------~~~~sfD~ 148 (261)
T PLN02233 132 IEGDATDLP---------------------------------------------------------------FDDCYFDA 148 (261)
T ss_pred EEcccccCC---------------------------------------------------------------CCCCCEeE
Confidence 544432211 12467999
Q ss_pred EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716 274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 307 (351)
Q Consensus 274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA 307 (351)
|+++.++-+......+++-+.+.|+ |+|.+++.
T Consensus 149 V~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~ 181 (261)
T PLN02233 149 ITMGYGLRNVVDRLKAMQEMYRVLK-PGSRVSIL 181 (261)
T ss_pred EEEecccccCCCHHHHHHHHHHHcC-cCcEEEEE
Confidence 9999999888888888888999997 89988775
No 53
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.61 E-value=7.8e-07 Score=83.54 Aligned_cols=99 Identities=21% Similarity=0.291 Sum_probs=70.7
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 194 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~ 194 (351)
.++.+|||+|||+|..+..++.. +..+|+++|+++.|++.. +.|. +++.+.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a-----~~~~-----------------------~~~~~~ 81 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEA-----RSRL-----------------------PDCQFV 81 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HHhC-----------------------CCCeEE
Confidence 46789999999999999887753 345899999999988542 1111 123333
Q ss_pred eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716 195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 274 (351)
Q Consensus 195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI 274 (351)
.+|-.+ | .....||+|
T Consensus 82 ~~d~~~---------------------------------------------------------~-------~~~~~fD~v 97 (258)
T PRK01683 82 EADIAS---------------------------------------------------------W-------QPPQALDLI 97 (258)
T ss_pred ECchhc---------------------------------------------------------c-------CCCCCccEE
Confidence 222100 1 013489999
Q ss_pred EEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716 275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 307 (351)
Q Consensus 275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA 307 (351)
+++.++........+++-+.++|+ |+|++.+.
T Consensus 98 ~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~~~~~ 129 (258)
T PRK01683 98 FANASLQWLPDHLELFPRLVSLLA-PGGVLAVQ 129 (258)
T ss_pred EEccChhhCCCHHHHHHHHHHhcC-CCcEEEEE
Confidence 999999877778888888999997 89988875
No 54
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.59 E-value=3.6e-06 Score=79.43 Aligned_cols=59 Identities=24% Similarity=0.232 Sum_probs=42.3
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHH
Q 018716 99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVL 162 (351)
Q Consensus 99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~ 162 (351)
..|++.+.... ...++.+|||+|||+|..++.++... ..+|+++|+++.+++. ...|+.
T Consensus 94 e~l~~~~~~~~----~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~-a~~n~~ 153 (275)
T PRK09328 94 EELVEWALEAL----LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAV-ARRNAK 153 (275)
T ss_pred HHHHHHHHHhc----cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHH
Confidence 45666555331 22467899999999999999888643 4689999999999854 334443
No 55
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.59 E-value=1.8e-06 Score=78.46 Aligned_cols=130 Identities=18% Similarity=0.236 Sum_probs=83.6
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 018716 115 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 192 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~ 192 (351)
..++.+|||+|||+|..++.+++. + ..+|++.|.++.+++. .+.|+..|. +..++.
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~-a~~n~~~~g---------------------~~~~v~ 95 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINL-TRRNAEKFG---------------------VLNNIV 95 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHhC---------------------CCCCeE
Confidence 357899999999999999988753 3 3589999999999864 344544331 112355
Q ss_pred eeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCcc
Q 018716 193 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 272 (351)
Q Consensus 193 ~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~D 272 (351)
+..+|..+. + + .....||
T Consensus 96 ~~~~d~~~~---l---------------------------------------------------------~--~~~~~~D 113 (198)
T PRK00377 96 LIKGEAPEI---L---------------------------------------------------------F--TINEKFD 113 (198)
T ss_pred EEEechhhh---H---------------------------------------------------------h--hcCCCCC
Confidence 544433210 0 0 0124789
Q ss_pred EEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEee
Q 018716 273 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIK 338 (351)
Q Consensus 273 lILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v~ 338 (351)
.|+..= ....+..+++.+.++|+ |+|++++..-.. ....+-...+++.|+ ..++++
T Consensus 114 ~V~~~~---~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~-----~~~~~~~~~l~~~g~-~~~~~~ 169 (198)
T PRK00377 114 RIFIGG---GSEKLKEIISASWEIIK-KGGRIVIDAILL-----ETVNNALSALENIGF-NLEITE 169 (198)
T ss_pred EEEECC---CcccHHHHHHHHHHHcC-CCcEEEEEeecH-----HHHHHHHHHHHHcCC-CeEEEE
Confidence 988731 22346777878888887 889887644322 246777788888886 665544
No 56
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.59 E-value=3.2e-06 Score=69.37 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=33.7
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~ 155 (351)
.++++|||+|||+|..++.++.. +..+|+++|+++.+++.
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~ 58 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRL 58 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHH
Confidence 35789999999999999988864 44689999999998754
No 57
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.57 E-value=1.1e-06 Score=83.41 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=50.8
Q ss_pred CcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 91 FLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 91 G~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
|++.=-.++.|+.|..- ...++|||||||+|++|++++.. ...++++.++++++.+. ...|+.+|-
T Consensus 26 ~~~~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~-A~~nv~ln~ 92 (248)
T COG4123 26 GFRYGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEM-AQRNVALNP 92 (248)
T ss_pred ccccccHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHH-HHHHHHhCc
Confidence 34444466788888742 23889999999999999999864 44689999999998865 567777764
No 58
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.57 E-value=1.9e-06 Score=82.83 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=35.7
Q ss_pred CEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 119 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 119 krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
++|||+|||+|..++.++... ..+|+++|+++.+++. ...|+..|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~-a~~n~~~~ 161 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAV-AEENAEKN 161 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence 799999999999999988643 3589999999999864 34555443
No 59
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.56 E-value=1.7e-07 Score=76.95 Aligned_cols=38 Identities=34% Similarity=0.487 Sum_probs=34.1
Q ss_pred CCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 118 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
|.+|||+|||+|...+.++..+..++++.|+++..++.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~ 38 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVEL 38 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHH
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHH
Confidence 56999999999999999998876799999999998754
No 60
>PRK08317 hypothetical protein; Provisional
Probab=98.55 E-value=2.9e-06 Score=77.15 Aligned_cols=104 Identities=26% Similarity=0.363 Sum_probs=72.8
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 193 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~ 193 (351)
.++.+|||+|||+|.....++.. ...+|+++|.++.+++.. +.|... ...++++
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a-----~~~~~~-------------------~~~~~~~ 73 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA-----KERAAG-------------------LGPNVEF 73 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-----HHHhhC-------------------CCCceEE
Confidence 46889999999999988877753 235899999999887532 222110 0123444
Q ss_pred eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716 194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 273 (351)
Q Consensus 194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl 273 (351)
..+|....+ ...+.||+
T Consensus 74 ~~~d~~~~~---------------------------------------------------------------~~~~~~D~ 90 (241)
T PRK08317 74 VRGDADGLP---------------------------------------------------------------FPDGSFDA 90 (241)
T ss_pred EecccccCC---------------------------------------------------------------CCCCCceE
Confidence 433322110 12467999
Q ss_pred EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716 274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 307 (351)
Q Consensus 274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA 307 (351)
|++..++.+......+++.+.++|+ |+|.+++.
T Consensus 91 v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~ 123 (241)
T PRK08317 91 VRSDRVLQHLEDPARALAEIARVLR-PGGRVVVL 123 (241)
T ss_pred EEEechhhccCCHHHHHHHHHHHhc-CCcEEEEE
Confidence 9999999888888999999999997 88887765
No 61
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.54 E-value=5.6e-07 Score=84.79 Aligned_cols=39 Identities=15% Similarity=0.070 Sum_probs=33.9
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716 268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 307 (351)
Q Consensus 268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA 307 (351)
.+.||+|++..++......+.+++-+.+.|+ |+|.+++.
T Consensus 87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~ 125 (255)
T PRK14103 87 KPDTDVVVSNAALQWVPEHADLLVRWVDELA-PGSWIAVQ 125 (255)
T ss_pred CCCceEEEEehhhhhCCCHHHHHHHHHHhCC-CCcEEEEE
Confidence 3579999999999988888888888999997 89988874
No 62
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.53 E-value=2.3e-06 Score=89.00 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=36.6
Q ss_pred CCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 117 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
++.+|||+|||+|..++.++. ....+|+++|+|+.+++. +..|+..|
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~-A~~N~~~~ 185 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEV-AKSNAIKY 185 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHH-HHHHHHHc
Confidence 456999999999999998775 344589999999999865 45555443
No 63
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.50 E-value=1.8e-06 Score=83.39 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=37.0
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 117 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
++++|||+|||+|..++.++... ..+|+++|+|+.+++. ++.|+..|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~-A~~n~~~~ 168 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAV-AEINIERH 168 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence 45799999999999999988642 3489999999999865 34555444
No 64
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.49 E-value=2.3e-06 Score=78.01 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=41.1
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
+.+++||||+||+|.+|+.++..|+++|++.|.++.+++. .+.|+..|
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~-~~~N~~~~ 95 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQT-LKENLALL 95 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence 5789999999999999999999999899999999998854 34555554
No 65
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.47 E-value=1.5e-06 Score=86.30 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=36.1
Q ss_pred CCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 118 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
..+|||||||+|..++.++..+ ..+|+++|+++.+++. .+.|+..|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~-A~~nl~~n 243 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALES-SRATLAAN 243 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence 4589999999999999988654 3589999999999865 34455444
No 66
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=5.1e-06 Score=80.31 Aligned_cols=45 Identities=27% Similarity=0.317 Sum_probs=37.5
Q ss_pred EEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 120 RVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 120 rVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
+|||||||+|.+++.++... ..+|+++|+|+..+++ .+.|...|.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~-A~~Na~~~~ 158 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALAL-ARENAERNG 158 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHH-HHHHHHHcC
Confidence 89999999999999998754 3589999999999965 566666664
No 67
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.46 E-value=3.3e-06 Score=77.63 Aligned_cols=40 Identities=38% Similarity=0.641 Sum_probs=34.8
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
..++++|||+|||+|..+..++..+. +|+++|+++++++.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~ 92 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQM 92 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 35789999999999999998887665 89999999999854
No 68
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.45 E-value=3.3e-06 Score=84.92 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=33.5
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~ 155 (351)
.++.+|||+|||+|..++.++.. |. +|+++|+++++++.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~ 205 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKL 205 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 47889999999999999888764 54 89999999998854
No 69
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.45 E-value=5.4e-07 Score=88.82 Aligned_cols=52 Identities=29% Similarity=0.358 Sum_probs=42.6
Q ss_pred CCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 112 GQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 112 ~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
++..|++|.|||+|||||++++++|+.|+++|++.|.+. +. ......++.|.
T Consensus 55 n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia-~~a~~iv~~N~ 106 (346)
T KOG1499|consen 55 NKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IA-DFARKIVKDNG 106 (346)
T ss_pred chhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HH-HHHHHHHHhcC
Confidence 345699999999999999999999999999999999887 44 33455566553
No 70
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.45 E-value=5.7e-08 Score=77.95 Aligned_cols=35 Identities=14% Similarity=0.411 Sum_probs=23.8
Q ss_pred CCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEE
Q 018716 269 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVV 304 (351)
Q Consensus 269 ~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ 304 (351)
.+||+|+++.++++-+..+.+++.+.++|+ |+|+.
T Consensus 65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S-HHHHHHHHTTT-T-SS-EE
T ss_pred cccceehhhhhHhhhhhHHHHHHHHHHHcC-CCCCC
Confidence 699999999999999999999999999997 88864
No 71
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.44 E-value=8.9e-06 Score=77.23 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=42.2
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHH
Q 018716 99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLA 163 (351)
Q Consensus 99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~l 163 (351)
..|++.+..... ......+|||+|||+|..++.++. .+..+|+++|+|+.+++. .+.|+..
T Consensus 71 e~Lv~~~l~~~~---~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~-A~~N~~~ 132 (251)
T TIGR03704 71 EFLVDEAAALAR---PRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRC-ARRNLAD 132 (251)
T ss_pred HHHHHHHHHhhc---ccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHH
Confidence 466666654321 112346899999999999998875 334589999999999864 3444443
No 72
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=5.9e-07 Score=82.01 Aligned_cols=78 Identities=24% Similarity=0.254 Sum_probs=55.0
Q ss_pred cccCCCCCCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhh
Q 018716 77 GFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 156 (351)
Q Consensus 77 g~~~~dl~~g~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~ 156 (351)
++.+-++.-..|.+-- .++.++..... ...+..|++|+|||||||.+++.+++.|++.|++.|++++.++.+
T Consensus 13 ~f~~p~~~LEQY~Tp~-------~~Aa~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~ 84 (198)
T COG2263 13 GFPNPKLGLEQYRTPA-------PLAAYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIA 84 (198)
T ss_pred CCCCCCccceecCCCh-------HHHHHHHHHHH-HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHH
Confidence 3344444445566542 33444443332 245689999999999999999999999999999999999999653
Q ss_pred hHHHHHH
Q 018716 157 TVPNVLA 163 (351)
Q Consensus 157 t~~Nv~l 163 (351)
+.|...
T Consensus 85 -r~N~~~ 90 (198)
T COG2263 85 -RANAEE 90 (198)
T ss_pred -HHHHHh
Confidence 344443
No 73
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.44 E-value=3.1e-06 Score=76.61 Aligned_cols=102 Identities=25% Similarity=0.382 Sum_probs=72.6
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCC--CEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 194 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga--~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~ 194 (351)
++++|||+|||+|..+..++..+. .++++.|+++.+++. ...|.. . ..++++.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~-----~~~~~~-~-------------------~~~i~~~ 93 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEV-----AKKKSE-L-------------------PLNIEFI 93 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHH-----HHHHhc-c-------------------CCCceEE
Confidence 789999999999999888876544 489999999988743 333321 0 1134444
Q ss_pred eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716 195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 274 (351)
Q Consensus 195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI 274 (351)
.+|..+.+ ...+.||+|
T Consensus 94 ~~d~~~~~---------------------------------------------------------------~~~~~~D~i 110 (223)
T TIGR01934 94 QADAEALP---------------------------------------------------------------FEDNSFDAV 110 (223)
T ss_pred ecchhcCC---------------------------------------------------------------CCCCcEEEE
Confidence 43322110 123579999
Q ss_pred EEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716 275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 307 (351)
Q Consensus 275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA 307 (351)
+.+..+.+......+++.+.++|+ |+|.+++.
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~ 142 (223)
T TIGR01934 111 TIAFGLRNVTDIQKALREMYRVLK-PGGRLVIL 142 (223)
T ss_pred EEeeeeCCcccHHHHHHHHHHHcC-CCcEEEEE
Confidence 999888888888889999999997 89988875
No 74
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.43 E-value=4.4e-06 Score=78.67 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=32.8
Q ss_pred CCCCEEEEEcccCCHHHHHHHH---cCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACL---KGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~---~Ga~~V~~TD~s~~vL~~ 155 (351)
..+.+|||+|||+|...+.++. ....+|++.|.++.|++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~ 97 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIER 97 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH
Confidence 3678999999999999887765 223589999999999865
No 75
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.40 E-value=8.2e-06 Score=79.76 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=35.9
Q ss_pred CEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 119 KRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 119 krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
++|||+|||+|..++.++.. ...+|+++|+|+.+++. ...|+..|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~-A~~n~~~~ 180 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAV-AEINIERH 180 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence 68999999999999998864 34589999999999964 34555443
No 76
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.40 E-value=3.9e-06 Score=77.32 Aligned_cols=40 Identities=10% Similarity=-0.033 Sum_probs=33.6
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~ 155 (351)
.++.+|||+|||+|.....++.. +..++++.|+|+++++.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~ 82 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEK 82 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 36779999999999999887754 44589999999999864
No 77
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.40 E-value=8.4e-07 Score=71.70 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=26.3
Q ss_pred EEEEcccCCHHHHHHHHc---C-CCEEEEEcCChHHHHh
Q 018716 121 VLELSCGYGLPGIFACLK---G-AGTVHFQDLSAETIRC 155 (351)
Q Consensus 121 VLELGcGtGL~gl~aa~~---G-a~~V~~TD~s~~vL~~ 155 (351)
|||+|||+|-....++.. | ..++++.|++++|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~ 39 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLEL 39 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHH
Confidence 799999999999888754 3 2699999999999853
No 78
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.39 E-value=4e-06 Score=76.98 Aligned_cols=39 Identities=23% Similarity=0.468 Sum_probs=33.2
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.+..++||||||.|--++++|..|. .|++.|+|+..++.
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~ 67 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEK 67 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 5788999999999999999999998 79999999988754
No 79
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.38 E-value=4.6e-06 Score=63.97 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=33.7
Q ss_pred CCCccEEEEeccccC-ccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716 268 EGGYDVILLTEIPYS-VTSLKKLYLLIKKCLRPPYGVVYLA 307 (351)
Q Consensus 268 ~~~~DlILasDviY~-~~~~~~L~~~l~~~L~~p~gv~ylA 307 (351)
..+||+|++.-+.+. ......+++.+..+|+ ++|.+++.
T Consensus 64 ~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~-~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHLVEDLARFLEEARRLLK-PGGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeehhhHHHHHHHHHHHHcC-CCCEEEEE
Confidence 467999999999988 8888889999888886 89988876
No 80
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.36 E-value=1.1e-05 Score=75.16 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=32.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc---CCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK---GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~---Ga~~V~~TD~s~~vL~~ 155 (351)
.++.+|||+|||+|...+.++.. ...+|++.|+++.|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~ 94 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVER 94 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH
Confidence 36789999999999998887753 23589999999999854
No 81
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.35 E-value=1.1e-05 Score=75.96 Aligned_cols=139 Identities=12% Similarity=0.180 Sum_probs=86.2
Q ss_pred CCCCEEEEEcccCCHHHHHHHH--cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716 116 FRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 193 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~--~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~ 193 (351)
.+.++|||+|||+|..++.++. .+..+|+..|+++++++. .+.|+..|. +..++++
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~-A~~n~~~~g---------------------l~~~i~~ 124 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEV-GLEFIKKAG---------------------VDHKINF 124 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCCcEEE
Confidence 4688999999999998776654 335699999999998854 344544332 2346777
Q ss_pred eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716 194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 273 (351)
Q Consensus 194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl 273 (351)
..+|..+. +..+ . .....++||+
T Consensus 125 ~~gda~~~---L~~l-------------------------------~-----------------------~~~~~~~fD~ 147 (234)
T PLN02781 125 IQSDALSA---LDQL-------------------------------L-----------------------NNDPKPEFDF 147 (234)
T ss_pred EEccHHHH---HHHH-------------------------------H-----------------------hCCCCCCCCE
Confidence 77766431 1000 0 0012467999
Q ss_pred EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecc--------------ccccccchHHHHHHhhhhcCceeeEEe
Q 018716 274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK--------------NYVGFNNAARHLRSLVDEEGIFGAHLI 337 (351)
Q Consensus 274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~--------------~yfgv~gg~~~F~~~ve~~G~~~~~~v 337 (351)
|+. |.- ...+..+++.+.++|+ |+|++.+-.-- +.-.....+++|.+.+.++--+.+.++
T Consensus 148 Vfi-Da~--k~~y~~~~~~~~~ll~-~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~l 221 (234)
T PLN02781 148 AFV-DAD--KPNYVHFHEQLLKLVK-VGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQI 221 (234)
T ss_pred EEE-CCC--HHHHHHHHHHHHHhcC-CCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 876 321 3567778888888887 88987652110 000011356788888877655565554
No 82
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.35 E-value=5.6e-06 Score=76.25 Aligned_cols=40 Identities=25% Similarity=0.244 Sum_probs=33.3
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~ 155 (351)
.++.+|||+|||+|..++.++.. + ..+|+..|+++++++.
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~ 117 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEK 117 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 57889999999999999888764 2 2369999999998854
No 83
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=7.8e-06 Score=79.13 Aligned_cols=118 Identities=21% Similarity=0.314 Sum_probs=81.3
Q ss_pred chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716 95 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 173 (351)
Q Consensus 95 Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~ 173 (351)
=++...-.+.+++.. ..-+|++|||||||-|...+++|.. |+ +|+++++|++..+. ++.-+...
T Consensus 54 ~eAQ~~k~~~~~~kl----~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~-----~~~r~~~~----- 118 (283)
T COG2230 54 EEAQRAKLDLILEKL----GLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAY-----AEKRIAAR----- 118 (283)
T ss_pred HHHHHHHHHHHHHhc----CCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHH-----HHHHHHHc-----
Confidence 344444445555442 3458999999999999999999975 55 89999999987632 22222110
Q ss_pred cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716 174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 253 (351)
Q Consensus 174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls 253 (351)
.+..+|++..-||...
T Consensus 119 ------------gl~~~v~v~l~d~rd~---------------------------------------------------- 134 (283)
T COG2230 119 ------------GLEDNVEVRLQDYRDF---------------------------------------------------- 134 (283)
T ss_pred ------------CCCcccEEEecccccc----------------------------------------------------
Confidence 1233455555555431
Q ss_pred CchhhhhccccccCCCCccEEEEeccccCccC--HHHHHHHHHHHcCCCCeEEEE
Q 018716 254 GSRAWERASEADQGEGGYDVILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYL 306 (351)
Q Consensus 254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~--~~~L~~~l~~~L~~p~gv~yl 306 (351)
.++||-|++.+..-.... ++.+++.++++|+ |+|++++
T Consensus 135 --------------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~ll 174 (283)
T COG2230 135 --------------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLL 174 (283)
T ss_pred --------------ccccceeeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEE
Confidence 223899999998877655 9999999999997 8888775
No 84
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.34 E-value=7.9e-06 Score=74.91 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=34.2
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.++.+|||+|||+|..+..++..+. +|+++|.++.+++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~ 100 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEE 100 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence 4678999999999999988887775 69999999999854
No 85
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.29 E-value=8.6e-06 Score=83.18 Aligned_cols=60 Identities=20% Similarity=0.142 Sum_probs=43.8
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
..|.+.+...+ ...++.+|||+|||+|..++.++..+ .+|++.|+|+++++.. ..|+..|
T Consensus 283 e~l~~~vl~~l----~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A-~~n~~~~ 342 (443)
T PRK13168 283 QKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERA-RENARRN 342 (443)
T ss_pred HHHHHHHHHHh----cCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHH-HHHHHHc
Confidence 44555555442 22467899999999999999988765 5899999999999652 3444433
No 86
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.29 E-value=1.1e-05 Score=74.11 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=32.8
Q ss_pred CCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~ 155 (351)
.++.+|||+|||+|..+..++. .+ ..+|++.|+++++++.
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~ 112 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIY 112 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence 4678999999999999977764 32 3489999999998854
No 87
>PLN02672 methionine S-methyltransferase
Probab=98.29 E-value=1.3e-05 Score=89.65 Aligned_cols=95 Identities=24% Similarity=0.263 Sum_probs=61.2
Q ss_pred hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhcc
Q 018716 96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 174 (351)
Q Consensus 96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~ 174 (351)
+.+..|++.|.... ...+++++|||||||+|..++.++.. ...+|+++|+|+++++. ...|+.+|..... ...
T Consensus 100 peTE~lve~L~~~~---~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~-A~~Na~~n~l~~~-~~~- 173 (1082)
T PLN02672 100 DWSFTFYEGLNRHP---DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKV-AWINLYLNALDDD-GLP- 173 (1082)
T ss_pred hhHHHHHHHHHhcc---cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHcCcccc-ccc-
Confidence 55667777754321 12367889999999999999998864 34689999999999965 5677777642100 000
Q ss_pred CCCCCCCCcccCCCCceeeeeccCCC
Q 018716 175 QPESSLTPSRQTLAPSVHFYAGDWEE 200 (351)
Q Consensus 175 ~~~s~~~p~~~~l~~~v~~~~gdW~~ 200 (351)
...-....+..+|+|+.+||-+
T Consensus 174 ----~~~~~~~~l~~rV~f~~sDl~~ 195 (1082)
T PLN02672 174 ----VYDGEGKTLLDRVEFYESDLLG 195 (1082)
T ss_pred ----ccccccccccccEEEEECchhh
Confidence 0000000123468899998865
No 88
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.28 E-value=4.3e-06 Score=76.98 Aligned_cols=122 Identities=23% Similarity=0.359 Sum_probs=71.5
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 196 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g 196 (351)
+-.++||+|||.|..+..++.. ..+++++|+++..++.. +.+... .+.|++..+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~A------------r~Rl~~-------------~~~V~~~~~ 96 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARA------------RERLAG-------------LPHVEWIQA 96 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHH------------HHHTTT--------------SSEEEEES
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHH------------HHhcCC-------------CCCeEEEEC
Confidence 3468999999999999888754 25899999999887531 111100 124555433
Q ss_pred cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716 197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 276 (351)
Q Consensus 197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa 276 (351)
+--+ ....++||+|+.
T Consensus 97 dvp~----------------------------------------------------------------~~P~~~FDLIV~ 112 (201)
T PF05401_consen 97 DVPE----------------------------------------------------------------FWPEGRFDLIVL 112 (201)
T ss_dssp -TTT-------------------------------------------------------------------SS-EEEEEE
T ss_pred cCCC----------------------------------------------------------------CCCCCCeeEEEE
Confidence 2100 024679999999
Q ss_pred eccccCccCHHH---HHHHHHHHcCCCCeEEEEEeccc--cc--cccchHHHHHHhhhhc
Q 018716 277 TEIPYSVTSLKK---LYLLIKKCLRPPYGVVYLATKKN--YV--GFNNAARHLRSLVDEE 329 (351)
Q Consensus 277 sDviY~~~~~~~---L~~~l~~~L~~p~gv~ylA~K~~--yf--gv~gg~~~F~~~ve~~ 329 (351)
||+.|.-...+. +++.+...|. |+|.+.++.-+- ++ |---|.+.-.+++.+.
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~-pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALA-PGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH 171 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhC-CCCEEEEEEecCCcccccCcccchHHHHHHHHHH
Confidence 999999976554 4555555676 999999985432 22 2222566666666554
No 89
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.27 E-value=6.9e-06 Score=77.34 Aligned_cols=54 Identities=28% Similarity=0.442 Sum_probs=32.4
Q ss_pred cccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHh
Q 018716 92 LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC 155 (351)
Q Consensus 92 ~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~ 155 (351)
.+.|.. .+++.+. ..++.+|||+|||||..++.++.. + ..+|++.|++++||+.
T Consensus 32 ~~~wr~--~~~~~~~--------~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~ 87 (233)
T PF01209_consen 32 DRRWRR--KLIKLLG--------LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEV 87 (233)
T ss_dssp -----S--HHHHHHT----------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHH
T ss_pred HHHHHH--HHHhccC--------CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHH
Confidence 356776 4444442 246789999999999999988753 3 2489999999999954
No 90
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.25 E-value=7.9e-06 Score=77.38 Aligned_cols=119 Identities=24% Similarity=0.423 Sum_probs=83.3
Q ss_pred cccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhh
Q 018716 92 LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARE 170 (351)
Q Consensus 92 ~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~ 170 (351)
-+.|.-. ++..+.. .+|.+|||+|||||-..+.+++ .|..+|++.|+|+.||+.. .....
T Consensus 36 ~~~Wr~~--~i~~~~~--------~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a--------~~k~~- 96 (238)
T COG2226 36 HRLWRRA--LISLLGI--------KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA--------REKLK- 96 (238)
T ss_pred hHHHHHH--HHHhhCC--------CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHH--------HHHhh-
Confidence 4688864 4444321 2799999999999999998885 5567999999999998431 11110
Q ss_pred hhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccc
Q 018716 171 RQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSR 250 (351)
Q Consensus 171 ~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r 250 (351)
.. ... .|+|..+|=+++|
T Consensus 97 --------~~-----~~~-~i~fv~~dAe~LP------------------------------------------------ 114 (238)
T COG2226 97 --------KK-----GVQ-NVEFVVGDAENLP------------------------------------------------ 114 (238)
T ss_pred --------cc-----Ccc-ceEEEEechhhCC------------------------------------------------
Confidence 00 011 1566555544332
Q ss_pred cccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716 251 KLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 307 (351)
Q Consensus 251 ~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA 307 (351)
-.+..||++..+=.+=+....+..++-+.+.|+ |+|++++.
T Consensus 115 ---------------f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlK-pgG~~~vl 155 (238)
T COG2226 115 ---------------FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLK-PGGRLLVL 155 (238)
T ss_pred ---------------CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhc-CCeEEEEE
Confidence 246789999999888888889988888999997 89977765
No 91
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.23 E-value=4e-05 Score=70.80 Aligned_cols=138 Identities=15% Similarity=0.174 Sum_probs=84.9
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 018716 115 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 192 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~ 192 (351)
..++.+|||||||+|..+..++.. + ..+|++.|+++ |. + .+.|.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~-----------------------~~~v~ 94 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------P-----------------------IVGVD 94 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------C-----------------------CCCcE
Confidence 357889999999999999887754 3 24899999987 21 0 02466
Q ss_pred eeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCcc
Q 018716 193 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 272 (351)
Q Consensus 193 ~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~D 272 (351)
+..+|....+.+.. +. .......||
T Consensus 95 ~i~~D~~~~~~~~~-i~------------------------------------------------------~~~~~~~~D 119 (209)
T PRK11188 95 FLQGDFRDELVLKA-LL------------------------------------------------------ERVGDSKVQ 119 (209)
T ss_pred EEecCCCChHHHHH-HH------------------------------------------------------HHhCCCCCC
Confidence 77777765432111 00 001246789
Q ss_pred EEEEeccccCcc-----------CHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEeeecC
Q 018716 273 VILLTEIPYSVT-----------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMT 341 (351)
Q Consensus 273 lILasDviY~~~-----------~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v~e~~ 341 (351)
+|++.-..+... .+..+++.+.++|+ |+|.+++..-. ++...+|+..++ ..+..+++++..+
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~~~-----~~~~~~~l~~l~-~~f~~v~~~Kp~s 192 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA-PGGSFVVKVFQ-----GEGFDEYLREIR-SLFTKVKVRKPDS 192 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEEec-----CcCHHHHHHHHH-hCceEEEEECCcc
Confidence 998854343321 12456677777887 89998886311 234566665543 3566888777666
Q ss_pred C----cceeee
Q 018716 342 D----RDIWKF 348 (351)
Q Consensus 342 d----~~i~~~ 348 (351)
. +|++.+
T Consensus 193 sr~~s~e~~~~ 203 (209)
T PRK11188 193 SRARSREVYIV 203 (209)
T ss_pred ccccCceeEEE
Confidence 4 566554
No 92
>PLN03075 nicotianamine synthase; Provisional
Probab=98.23 E-value=2.7e-05 Score=75.94 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=73.7
Q ss_pred CCCEEEEEccc-CCHHHHHHHH--cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716 117 RGKRVLELSCG-YGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 193 (351)
Q Consensus 117 ~~krVLELGcG-tGL~gl~aa~--~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~ 193 (351)
..++|+|+||| .|+.++.++. ....+++..|+++++++.. +.+.... ..+..++.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~A-----r~~~~~~----------------~gL~~rV~F 181 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVA-----RRLVSSD----------------PDLSKRMFF 181 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHH-----HHHhhhc----------------cCccCCcEE
Confidence 78999999999 5566665552 2345899999999987531 2222110 013446777
Q ss_pred eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716 194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 273 (351)
Q Consensus 194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl 273 (351)
..+|..+.. ....+||+
T Consensus 182 ~~~Da~~~~---------------------------------------------------------------~~l~~FDl 198 (296)
T PLN03075 182 HTADVMDVT---------------------------------------------------------------ESLKEYDV 198 (296)
T ss_pred EECchhhcc---------------------------------------------------------------cccCCcCE
Confidence 665543210 01357999
Q ss_pred EEEeccccC-ccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716 274 ILLTEIPYS-VTSLKKLYLLIKKCLRPPYGVVYLAT 308 (351)
Q Consensus 274 ILasDviY~-~~~~~~L~~~l~~~L~~p~gv~ylA~ 308 (351)
|...=++|. .+..+.+++-|.+.|+ |+|++++..
T Consensus 199 VF~~ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvlr~ 233 (296)
T PLN03075 199 VFLAALVGMDKEEKVKVIEHLGKHMA-PGALLMLRS 233 (296)
T ss_pred EEEecccccccccHHHHHHHHHHhcC-CCcEEEEec
Confidence 999966787 4888999999999997 999998875
No 93
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.21 E-value=3e-05 Score=76.11 Aligned_cols=52 Identities=29% Similarity=0.222 Sum_probs=40.7
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
-.|+..|.+.. ..-++.+|||.|||+|...+.++..|+ +|++.|+++.|++.
T Consensus 168 ~~la~~~~~l~----~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~ 219 (329)
T TIGR01177 168 PKLARAMVNLA----RVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAG 219 (329)
T ss_pred HHHHHHHHHHh----CCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHH
Confidence 35666666542 124678999999999999888887775 89999999999854
No 94
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.19 E-value=3e-05 Score=70.96 Aligned_cols=52 Identities=17% Similarity=0.062 Sum_probs=38.3
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
..+..++.... ...++.+|||+|||+|..+..++..+ .+|+..|+++++++.
T Consensus 64 p~~~~~l~~~l----~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~ 115 (212)
T PRK00312 64 PYMVARMTELL----ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWE 115 (212)
T ss_pred HHHHHHHHHhc----CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHH
Confidence 34555554432 22467899999999999988777654 389999999988754
No 95
>PRK05785 hypothetical protein; Provisional
Probab=98.18 E-value=1.3e-05 Score=74.81 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=32.5
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.+.+|||+|||||.....++.....+|++.|.|++|++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~ 89 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM 89 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 467999999999999888776522489999999999854
No 96
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.17 E-value=2e-05 Score=71.55 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=32.7
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~ 155 (351)
...+|||||||+|..++.++.. ...+|++.|+++.+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~ 55 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLA 55 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHH
Confidence 4569999999999999888764 34589999999999865
No 97
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.17 E-value=3.8e-05 Score=70.16 Aligned_cols=59 Identities=22% Similarity=0.226 Sum_probs=43.9
Q ss_pred hhHHHHHHHHhhhhhcCCCCCCCC-EEEEEcccCCHHHHHHHHcCCC-EEEEEcCChHHHHh
Q 018716 96 ESSIDLVNVLKHEIRDGQLSFRGK-RVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRC 155 (351)
Q Consensus 96 eas~~L~~~L~~~~~~~~~~~~~k-rVLELGcGtGL~gl~aa~~Ga~-~V~~TD~s~~vL~~ 155 (351)
++-..+++||.+.+...+. .+.. ||||||||-|.+-.-++..|.. ..+++||++..+++
T Consensus 46 ~ae~riv~wl~d~~~~~rv-~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L 106 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRV-SKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL 106 (227)
T ss_pred cHHHHHHHHHHhhhhhhhh-cccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH
Confidence 4457788999887642221 2333 9999999999988888876653 49999999998864
No 98
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.17 E-value=1.2e-05 Score=82.28 Aligned_cols=104 Identities=24% Similarity=0.281 Sum_probs=72.2
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 195 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~ 195 (351)
.++++|||+|||+|..+..++..+ .+|++.|+++.+++. |...|. ..+++.+..
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~----a~~~~~---------------------~~~~i~~~~ 89 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKK----NESING---------------------HYKNVKFMC 89 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHH----HHHHhc---------------------cCCceEEEE
Confidence 467899999999999999988764 489999999998742 222211 012455555
Q ss_pred ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716 196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 275 (351)
Q Consensus 196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL 275 (351)
+|..... + ......||+|+
T Consensus 90 ~d~~~~~-------------------------~------------------------------------~~~~~~fD~I~ 108 (475)
T PLN02336 90 ADVTSPD-------------------------L------------------------------------NISDGSVDLIF 108 (475)
T ss_pred ecccccc-------------------------c------------------------------------CCCCCCEEEEe
Confidence 4442210 0 01246799999
Q ss_pred EeccccCccC--HHHHHHHHHHHcCCCCeEEEEE
Q 018716 276 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLA 307 (351)
Q Consensus 276 asDviY~~~~--~~~L~~~l~~~L~~p~gv~ylA 307 (351)
+.-+++.-.. ...+++-+.++|+ |+|++++.
T Consensus 109 ~~~~l~~l~~~~~~~~l~~~~r~Lk-~gG~l~~~ 141 (475)
T PLN02336 109 SNWLLMYLSDKEVENLAERMVKWLK-VGGYIFFR 141 (475)
T ss_pred hhhhHHhCCHHHHHHHHHHHHHhcC-CCeEEEEE
Confidence 9999886544 6778888888897 89988774
No 99
>PRK04266 fibrillarin; Provisional
Probab=98.17 E-value=0.00014 Score=68.28 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=33.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~ 155 (351)
.++.+|||+|||+|..++.++.. +..+|++.|.+++|++.
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~ 111 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRE 111 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHH
Confidence 47889999999999999888763 33489999999999864
No 100
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.17 E-value=2.5e-05 Score=72.11 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=33.4
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CC-CEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-Ga-~~V~~TD~s~~vL~~ 155 (351)
.++.+|||+|||+|..+..++.. +. .+|+..|+++++++.
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~ 116 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEK 116 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence 47889999999999999877753 32 489999999999864
No 101
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.15 E-value=1.9e-05 Score=73.43 Aligned_cols=63 Identities=19% Similarity=0.050 Sum_probs=46.6
Q ss_pred CCCCCcccch---hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 87 KPDGFLKCWE---SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 87 ~y~gG~k~We---as~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.|..+-.-|. -+-.|.+++... ..-++.|||++|||.|--.+++|..|. +|++.|+|+..++.
T Consensus 6 ry~~~~~~w~~~~p~~~l~~~~~~l-----~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 6 RWQEGQIGFHQSEVNPLLVKHWPAL-----GLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQ 71 (213)
T ss_pred HHhcCCCCCccCCCCHHHHHHHHhh-----CCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHH
Confidence 3444444564 334666766542 112567999999999999999999997 89999999998864
No 102
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=3e-05 Score=75.54 Aligned_cols=47 Identities=32% Similarity=0.610 Sum_probs=38.9
Q ss_pred CCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 118 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
+.+|||||||.|.+|+.+++.. ..+++++|.|...++. .+.|+..|.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~-ar~Nl~~N~ 206 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVES-ARKNLAANG 206 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHH-HHHhHHHcC
Confidence 3499999999999999999754 5689999999999875 466666664
No 103
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.14 E-value=4.4e-05 Score=69.12 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=36.2
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVL 162 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~ 162 (351)
.++.+|||+|||+|..++.++.. ...+|++.|.++++++. ...|+.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~-a~~n~~ 85 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNL-IRRNCD 85 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHH
Confidence 46789999999999999888753 33589999999999865 344444
No 104
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.14 E-value=2.5e-05 Score=78.88 Aligned_cols=50 Identities=34% Similarity=0.264 Sum_probs=44.8
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 166 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~ 166 (351)
.+|++||.+=|=||..|+.||+.||++|+..|.|...|+. ...|+.+|..
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~-a~~N~~LNg~ 265 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEW-ARENAELNGL 265 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHH-HHHHHHhcCC
Confidence 4699999999999999999999999999999999999965 5788888753
No 105
>PRK00811 spermidine synthase; Provisional
Probab=98.14 E-value=4.7e-05 Score=73.54 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=34.4
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhh
Q 018716 117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 156 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~ 156 (351)
..++||+||||+|.....+++. +..+|++.|+++.|++.+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a 116 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVC 116 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHH
Confidence 4689999999999998887765 667999999999998753
No 106
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.12 E-value=3.4e-05 Score=68.31 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=33.7
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
..+.+|||+|||+|..+..++..+ .+|++.|+++.+++.
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~ 50 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPR 50 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHH
Confidence 456799999999999999988764 589999999998854
No 107
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.12 E-value=1.5e-05 Score=77.93 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=38.3
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
.++.+|||+|||+|..++.++..+ .+|++.|+++.+++. ...|++.|
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~-A~~n~~~~ 218 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIAC-AKQSAAEL 218 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHH-HHHHHHHc
Confidence 467899999999999999999876 589999999999865 34444433
No 108
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.12 E-value=1.5e-05 Score=79.81 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=37.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
..+.+|||||||+|..++.++..+ .+|++.|+++.+++. ...|++.|
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~-a~~N~~~~ 278 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIAC-AQQSAQML 278 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHH-HHHHHHHc
Confidence 456899999999999999998766 589999999999865 34454444
No 109
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.11 E-value=2.2e-05 Score=75.10 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=32.9
Q ss_pred CCCccEEEEecccc-Cc-cCHHHHHHHHHHHcCCCCeEEEEEecc
Q 018716 268 EGGYDVILLTEIPY-SV-TSLKKLYLLIKKCLRPPYGVVYLATKK 310 (351)
Q Consensus 268 ~~~~DlILasDviY-~~-~~~~~L~~~l~~~L~~p~gv~ylA~K~ 310 (351)
.++||+|++..++. .. +....+++.+.++|+ |+|.++++..-
T Consensus 201 ~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~lg~~E 244 (264)
T smart00138 201 LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFLGHSE 244 (264)
T ss_pred cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEEECcc
Confidence 56899999988854 33 345678888899997 99999998543
No 110
>PHA03411 putative methyltransferase; Provisional
Probab=98.11 E-value=4.2e-05 Score=73.92 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=31.9
Q ss_pred CCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716 118 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~ 155 (351)
..+|||+|||+|.+++.++.. +..+|++.|+++.+++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~ 103 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARI 103 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 468999999999999887753 24589999999998865
No 111
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=6.4e-05 Score=68.56 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=54.1
Q ss_pred CCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--cCCCEEEEEcCChHHHHhhhHHHHHH
Q 018716 86 SKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLA 163 (351)
Q Consensus 86 g~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~--~Ga~~V~~TD~s~~vL~~~t~~Nv~l 163 (351)
..||-+ |-+..|.+.|........ ....+-++|||||+|.++-+++. .+...+.+||+|+..++. |+...+.
T Consensus 17 dVYEPa----EDTFlLlDaLekd~~eL~-~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~-Tl~TA~~ 90 (209)
T KOG3191|consen 17 DVYEPA----EDTFLLLDALEKDAAELK-GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEA-TLETARC 90 (209)
T ss_pred hccCcc----chhhHHHHHHHHHHHHHh-hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHH-HHHHHHh
Confidence 556633 567788888877643211 12267899999999999988875 234578999999999964 7777777
Q ss_pred HHH
Q 018716 164 NLE 166 (351)
Q Consensus 164 N~~ 166 (351)
|-.
T Consensus 91 n~~ 93 (209)
T KOG3191|consen 91 NRV 93 (209)
T ss_pred cCC
Confidence 754
No 112
>PRK03612 spermidine synthase; Provisional
Probab=98.04 E-value=4.1e-05 Score=80.01 Aligned_cols=40 Identities=28% Similarity=0.214 Sum_probs=34.1
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCC-CEEEEEcCChHHHHhh
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCT 156 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga-~~V~~TD~s~~vL~~~ 156 (351)
+.++||++|||+|.....+++.+. ++|++.|++++|++.+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~a 337 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELA 337 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHH
Confidence 568999999999999888776543 7999999999999753
No 113
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.01 E-value=7.6e-05 Score=72.24 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=30.6
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~ 155 (351)
++.+|||+|||+|..++.+++.. ..++++.|. +.+++.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~ 187 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDL 187 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHH
Confidence 56799999999999999888653 348999998 567754
No 114
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.00 E-value=8.3e-05 Score=75.52 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=38.0
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
.++.+|||+|||+|..++.++..+ .+|++.|+++.+++. .+.|+..|
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~-a~~n~~~~ 337 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEK-AQQNAELN 337 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHH-HHHHHHHh
Confidence 356899999999999999988754 589999999999865 34555554
No 115
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.00 E-value=5.8e-05 Score=70.36 Aligned_cols=51 Identities=24% Similarity=0.161 Sum_probs=40.4
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
-.|.+++... ...++.|||++|||.|--.+++|..|. +|++.|+++..++.
T Consensus 24 ~~L~~~~~~~-----~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~ 74 (218)
T PRK13255 24 PLLQKYWPAL-----ALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQ 74 (218)
T ss_pred HHHHHHHHhh-----CCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHH
Confidence 3566665432 113567999999999999999999987 89999999998864
No 116
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.99 E-value=3.2e-05 Score=76.30 Aligned_cols=40 Identities=30% Similarity=0.423 Sum_probs=36.4
Q ss_pred CCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHH
Q 018716 113 QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 153 (351)
Q Consensus 113 ~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL 153 (351)
..+|.+|.|||+|||+|+++++++..|+++|++.+-+. |-
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MA 212 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MA 212 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HH
Confidence 45799999999999999999999999999999999875 54
No 117
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.98 E-value=3.3e-05 Score=70.22 Aligned_cols=57 Identities=35% Similarity=0.524 Sum_probs=42.2
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHH
Q 018716 100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 167 (351)
Q Consensus 100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~ 167 (351)
.|.++|... .+.|.+||||=||||.+|+-|+..||++|++.|.|+..+ ..++.|+..
T Consensus 31 alFniL~~~------~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~-----~~i~~N~~~ 87 (183)
T PF03602_consen 31 ALFNILQPR------NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAI-----KIIKKNLEK 87 (183)
T ss_dssp HHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHH-----HHHHHHHHH
T ss_pred HHHHHhccc------ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHH-----HHHHHHHHH
Confidence 455556543 168999999999999999999999999999999999887 456667653
No 118
>PTZ00146 fibrillarin; Provisional
Probab=97.97 E-value=0.00033 Score=68.28 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=44.6
Q ss_pred cccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHh
Q 018716 92 LKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC 155 (351)
Q Consensus 92 ~k~Weas-~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~ 155 (351)
.++|+-- --|+..|..-+.. ....++.+|||||||+|..+..++.. | ...|++.|+++.+++.
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~-l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~d 172 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVAN-IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRD 172 (293)
T ss_pred eeeeCCcccHHHHHHHCCcce-eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHH
Confidence 6789753 2556555443321 12357889999999999999888753 3 3489999999987754
No 119
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.97 E-value=6.9e-06 Score=77.32 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=45.4
Q ss_pred CCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc----ccccc------chHHHHHHhhhhcCc
Q 018716 267 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----YVGFN------NAARHLRSLVDEEGI 331 (351)
Q Consensus 267 ~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~----yfgv~------gg~~~F~~~ve~~G~ 331 (351)
...+||+|.++||+----.++.++-....+|+ |+|..-+....- .|-++ .+-.--++.++..|+
T Consensus 185 ~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~-~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl 258 (287)
T COG4976 185 TQERFDLIVAADVLPYLGALEGLFAGAAGLLA-PGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGL 258 (287)
T ss_pred cCCcccchhhhhHHHhhcchhhHHHHHHHhcC-CCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCc
Confidence 46789999999999889999999999999997 888766653110 02111 133334567777886
No 120
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.93 E-value=0.0001 Score=66.33 Aligned_cols=37 Identities=30% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChH
Q 018716 115 SFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAE 151 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~ 151 (351)
..++.+|||+|||+|..+..++.. +..+|++.|+++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 357899999999999998877653 3457999999984
No 121
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.93 E-value=0.00019 Score=73.32 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=35.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHhhhHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVL 162 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~~t~~Nv~ 162 (351)
.++.+|||+|||+|..++.++.. +..+|++.|+++.+++. ++.|+.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~-~~~n~~ 296 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKL-IEENAK 296 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHH
Confidence 36789999999999999887753 34589999999999854 234443
No 122
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.92 E-value=0.00014 Score=69.32 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=30.8
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-C---CCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACLK-G---AGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~-G---a~~V~~TD~s~~vL~~ 155 (351)
.+.+|||+|||+|.....++.. . ..+|++.|+++.+++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~ 127 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKY 127 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHH
Confidence 4578999999999988776642 1 2379999999999854
No 123
>PRK06922 hypothetical protein; Provisional
Probab=97.92 E-value=8.1e-05 Score=79.38 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=33.0
Q ss_pred CCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~ 155 (351)
.++.+|||+|||+|..+..++. ....+|+++|+++.|++.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~ 457 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDT 457 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 4788999999999998877664 334589999999999854
No 124
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.91 E-value=0.0003 Score=71.69 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=33.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCC-CEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga-~~V~~TD~s~~vL~~ 155 (351)
.+|.+|||+|||+|..++.++..+. .+|++.|.++.+++.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~ 283 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLER 283 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 4788999999999999988876432 589999999999865
No 125
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.90 E-value=0.00016 Score=71.40 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=32.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CC-CEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-Ga-~~V~~TD~s~~vL~~ 155 (351)
.++.+|||+|||+|..++.++.. +. .+|++.|+++++++.
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~ 120 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEI 120 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence 46789999999999999888753 32 369999999999854
No 126
>PRK04457 spermidine synthase; Provisional
Probab=97.88 E-value=4.9e-05 Score=72.65 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=32.7
Q ss_pred CCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~ 155 (351)
+.++|||||||+|.....++. ....+|++.|+++++++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~ 105 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAV 105 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 568999999999999987764 344589999999999864
No 127
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.86 E-value=0.00019 Score=68.79 Aligned_cols=67 Identities=22% Similarity=0.319 Sum_probs=50.3
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe---ccccccccc-------------------hHHHHHHh
Q 018716 268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT---KKNYVGFNN-------------------AARHLRSL 325 (351)
Q Consensus 268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~---K~~yfgv~g-------------------g~~~F~~~ 325 (351)
..+||+|-+--++=+...--.|++-|++.|+ |+|++++|. =+.|...++ .+..|.+.
T Consensus 149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~-p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v 227 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALK-PNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNV 227 (265)
T ss_pred CCceEEEeehhhhhccCCHHHHHHHHHHHhC-CCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHH
Confidence 4579999999999999999999999999998 799999882 233333322 46667777
Q ss_pred hhhcCceeeEE
Q 018716 326 VDEEGIFGAHL 336 (351)
Q Consensus 326 ve~~G~~~~~~ 336 (351)
++..|+ +..-
T Consensus 228 ~~p~GF-~v~~ 237 (265)
T PF05219_consen 228 FEPAGF-EVER 237 (265)
T ss_pred HHhcCC-EEEE
Confidence 777775 4443
No 128
>PRK06202 hypothetical protein; Provisional
Probab=97.84 E-value=0.00011 Score=68.27 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=31.8
Q ss_pred CCCCEEEEEcccCCHHHHHHHH----cCC-CEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACL----KGA-GTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~----~Ga-~~V~~TD~s~~vL~~ 155 (351)
.++.+|||||||+|..+..++. .|. .+|+++|++++|++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~ 103 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAF 103 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH
Confidence 3567999999999998877653 232 389999999999854
No 129
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.82 E-value=4.7e-05 Score=71.68 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=49.4
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 154 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~ 154 (351)
++.++.-|...+.+. ...+++++|||+|||||..+..++..|+++|++.|.+++++.
T Consensus 56 vsr~~~kL~~~l~~~----~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~ 112 (228)
T TIGR00478 56 VSRGGEKLKEALEEF----NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLA 112 (228)
T ss_pred hhhhHHHHHHHHHhc----CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 577888888888765 345799999999999999999999989999999999998873
No 130
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.82 E-value=0.00015 Score=74.31 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=41.5
Q ss_pred cccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-c-CCCEEEEEcCChHHHHh
Q 018716 92 LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-K-GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 92 ~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~-Ga~~V~~TD~s~~vL~~ 155 (351)
+.+++.+-.++-.+... .+|.+|||+|||+|..++.++. . +..+|++.|.++.+++.
T Consensus 232 ~~vqd~~s~l~~~~l~~-------~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~ 290 (445)
T PRK14904 232 VSVQNPTQALACLLLNP-------QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEK 290 (445)
T ss_pred EEEeCHHHHHHHHhcCC-------CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHH
Confidence 45776554555444432 4788999999999998887764 2 23489999999999864
No 131
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.81 E-value=0.00047 Score=62.31 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=30.9
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 154 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~ 154 (351)
++++|||+|||+|..+..++......+++.|+++++++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~ 50 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVL 50 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHH
Confidence 56799999999999887776544447899999998774
No 132
>PRK01581 speE spermidine synthase; Validated
Probab=97.81 E-value=0.00025 Score=71.12 Aligned_cols=39 Identities=31% Similarity=0.197 Sum_probs=32.0
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~ 155 (351)
..++||+||||+|.....+++. +..+|++.|++++|++.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIel 189 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINM 189 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Confidence 5679999999999876666654 35799999999999865
No 133
>PRK04148 hypothetical protein; Provisional
Probab=97.80 E-value=0.00011 Score=63.86 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=39.6
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCH-HHHHHHHcCCCEEEEEcCChHHH
Q 018716 100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAETI 153 (351)
Q Consensus 100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL-~gl~aa~~Ga~~V~~TD~s~~vL 153 (351)
.+++||.++.. ..++++|||+|||+|. +...++..|. .|+++|+++..+
T Consensus 3 ~i~~~l~~~~~----~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV 52 (134)
T PRK04148 3 TIAEFIAENYE----KGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAV 52 (134)
T ss_pred HHHHHHHHhcc----cccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHH
Confidence 57888877642 2467899999999997 7877777786 899999999865
No 134
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.80 E-value=0.00017 Score=70.04 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=32.3
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC--CCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~G--a~~V~~TD~s~~vL~~ 155 (351)
++.+|||||||+|.....++... ..+|++.|+|++||+.
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~ 103 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKE 103 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHH
Confidence 56899999999999988776542 2489999999999854
No 135
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.79 E-value=0.00018 Score=71.82 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 98 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 98 s~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
...|.+++..... ..+.+||||+||+|..|+.++.. +.+|++.|+++.+++. .+.|+..|
T Consensus 192 ~e~l~~~v~~~~~-----~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~-a~~N~~~~ 251 (362)
T PRK05031 192 NEKMLEWALDATK-----GSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAA-AQYNIAAN 251 (362)
T ss_pred HHHHHHHHHHHhh-----cCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHH-HHHHHHHh
Confidence 3456666655431 12357999999999999977764 5699999999999965 45666655
No 136
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.77 E-value=0.00022 Score=71.00 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=36.0
Q ss_pred CCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 118 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
+.+||||+||+|..|+.++.. +.+|++.|+++++++. ...|+..|
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~-a~~n~~~~ 242 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNA-AQYNIAAN 242 (353)
T ss_pred CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHH-HHHHHHHc
Confidence 457999999999999977764 4699999999999865 34555544
No 137
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.77 E-value=0.00012 Score=71.17 Aligned_cols=49 Identities=31% Similarity=0.210 Sum_probs=41.2
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
.+|++||++=|=||..|++|+..||.+|+..|.|...++. .+.|..+|.
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~-a~~N~~lNg 170 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEW-AKENAALNG 170 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHH-HHHHHHHTT
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHcC
Confidence 4789999999999999999999999999999999999965 466777774
No 138
>PLN02476 O-methyltransferase
Probab=97.76 E-value=0.0012 Score=64.14 Aligned_cols=138 Identities=13% Similarity=0.190 Sum_probs=87.3
Q ss_pred CCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716 116 FRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 193 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~ 193 (351)
.+.++|||+|+|+|..++.+++ .+ ..+|+..|.+++..+. .+.|++.+. +..+|++
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~-Ar~n~~~aG---------------------l~~~I~l 174 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEV-AKRYYELAG---------------------VSHKVNV 174 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCCcEEE
Confidence 4689999999999999998886 22 3479999999988754 344544332 2346777
Q ss_pred eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716 194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 273 (351)
Q Consensus 194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl 273 (351)
..||-.+ .+..+ + .....+.||+
T Consensus 175 i~GdA~e---~L~~l-------------------------------~-----------------------~~~~~~~FD~ 197 (278)
T PLN02476 175 KHGLAAE---SLKSM-------------------------------I-----------------------QNGEGSSYDF 197 (278)
T ss_pred EEcCHHH---HHHHH-------------------------------H-----------------------hcccCCCCCE
Confidence 6665332 11100 0 0012357888
Q ss_pred EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccc----------cchHHHHHHhhhhcCceeeEEe
Q 018716 274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHLI 337 (351)
Q Consensus 274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv----------~gg~~~F~~~ve~~G~~~~~~v 337 (351)
|+.- . +...++..++.+.++|+ |+|++.+= --...|. .-++++|.+.+.++.-|.+.++
T Consensus 198 VFID-a--~K~~Y~~y~e~~l~lL~-~GGvIV~D-NvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~ll 266 (278)
T PLN02476 198 AFVD-A--DKRMYQDYFELLLQLVR-VGGVIVMD-NVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMV 266 (278)
T ss_pred EEEC-C--CHHHHHHHHHHHHHhcC-CCcEEEEe-cCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 7752 1 25678888898888886 78876542 1111121 0147899999988766666655
No 139
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.72 E-value=0.0012 Score=61.25 Aligned_cols=138 Identities=21% Similarity=0.300 Sum_probs=86.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 193 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~ 193 (351)
.+-++|||+|+++|.-++.++.. + ..+|+..|.+++..+. .++|++... +..+|++
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~-A~~~~~~ag---------------------~~~~I~~ 101 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEI-ARENFRKAG---------------------LDDRIEV 101 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHH-HHHHHHHTT---------------------GGGGEEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHH-HHHHHHhcC---------------------CCCcEEE
Confidence 46789999999999999998852 2 3589999999988743 334443321 2346888
Q ss_pred eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716 194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 273 (351)
Q Consensus 194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl 273 (351)
..+|..+. +..+. .....++||+
T Consensus 102 ~~gda~~~---l~~l~------------------------------------------------------~~~~~~~fD~ 124 (205)
T PF01596_consen 102 IEGDALEV---LPELA------------------------------------------------------NDGEEGQFDF 124 (205)
T ss_dssp EES-HHHH---HHHHH------------------------------------------------------HTTTTTSEEE
T ss_pred EEeccHhh---HHHHH------------------------------------------------------hccCCCceeE
Confidence 77765431 11000 0012468999
Q ss_pred EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccccc-cc---------chHHHHHHhhhhcCceeeEEe
Q 018716 274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG-FN---------NAARHLRSLVDEEGIFGAHLI 337 (351)
Q Consensus 274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfg-v~---------gg~~~F~~~ve~~G~~~~~~v 337 (351)
|.-=- ....+...++.+.++|+ ++|++.+=. -.+.| +. -.+++|.+.+.++--|.+-++
T Consensus 125 VFiDa---~K~~y~~y~~~~~~ll~-~ggvii~DN-~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~ll 193 (205)
T PF01596_consen 125 VFIDA---DKRNYLEYFEKALPLLR-PGGVIIADN-VLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLL 193 (205)
T ss_dssp EEEES---TGGGHHHHHHHHHHHEE-EEEEEEEET-TTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEE
T ss_pred EEEcc---cccchhhHHHHHhhhcc-CCeEEEEcc-ccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEE
Confidence 98633 46778888888888997 777666532 22222 10 136789999998766666654
No 140
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.69 E-value=0.00048 Score=65.87 Aligned_cols=39 Identities=18% Similarity=0.092 Sum_probs=32.2
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~ 155 (351)
..++||+||||+|.....++... ..+|++.|+++++++.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~ 111 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIEL 111 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHH
Confidence 45699999999998877666544 6789999999999865
No 141
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.69 E-value=0.00018 Score=66.97 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=36.4
Q ss_pred CCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716 267 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 307 (351)
Q Consensus 267 ~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA 307 (351)
.++.||.|+.+=++.+.+.....++-++++|+ |+|++++-
T Consensus 142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR-pgG~iifi 181 (252)
T KOG4300|consen 142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFI 181 (252)
T ss_pred ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence 46889999999999999999999999999997 89998875
No 142
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=97.67 E-value=1.9e-05 Score=75.82 Aligned_cols=46 Identities=26% Similarity=0.285 Sum_probs=39.4
Q ss_pred CCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC
Q 018716 90 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG 139 (351)
Q Consensus 90 gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G 139 (351)
+|+.+|+++..|..++.+.. ..+.+++|.++|||.++..+.+++..
T Consensus 67 tg~~~w~~al~L~~~l~~~~----d~~~~~~v~~l~~gi~~~~~~~a~~~ 112 (262)
T KOG2497|consen 67 TGLSVWESALSLEADLRDKP----DLSSELTVEELGCDIALKHVLAARVP 112 (262)
T ss_pred hccccchHHHHHHHHHhhCc----ccccccchHhhccCHHHHHHHHHhcc
Confidence 77889999999999999873 33789999999999999997777654
No 143
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.66 E-value=0.00045 Score=63.52 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=28.7
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 153 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL 153 (351)
-+|.||||||||.|-.--.+......+..+.|++++-+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v 49 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNV 49 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHH
Confidence 47899999999999776555542234789999998644
No 144
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.65 E-value=0.00024 Score=71.63 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=38.0
Q ss_pred CCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 118 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
+.+|||++||+|..|+.++. .++.+|++.|+|+..++. ...|+++|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~-a~~N~~~N 104 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVEL-IKKNLELN 104 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence 46899999999999999875 466789999999999865 45666666
No 145
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.64 E-value=0.0041 Score=56.93 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=38.7
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQ 167 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~ 167 (351)
.+|.+++|+|||||-+++.+++.+ ..+|++.|.++++++ .+++|...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~-----~~~~N~~~ 80 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALE-----LIERNAAR 80 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHH-----HHHHHHHH
Confidence 578899999999999999988655 468999999999985 35666653
No 146
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.61 E-value=0.00036 Score=71.83 Aligned_cols=53 Identities=26% Similarity=0.380 Sum_probs=37.1
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-----CCEEEEEcCChHHH
Q 018716 101 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-----AGTVHFQDLSAETI 153 (351)
Q Consensus 101 L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G-----a~~V~~TD~s~~vL 153 (351)
+.+.|.+..+......+++.||++|||+|.++.+++..+ +.+|++.+.|+...
T Consensus 170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~ 227 (448)
T PF05185_consen 170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV 227 (448)
T ss_dssp HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH
T ss_pred HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH
Confidence 344555554333333468999999999999999887654 67999999999765
No 147
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.59 E-value=0.0004 Score=70.21 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=33.4
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~ 155 (351)
..+..+||||||+|...+.+|.. ....+++.|+++.+++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~ 161 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQ 161 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHH
Confidence 35679999999999999988864 33589999999999865
No 148
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.57 E-value=0.00078 Score=68.80 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=36.1
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLA 163 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~l 163 (351)
.+|.+|||+|||+|..++.++.. + ..+|++.|.++.+++. .+.|+..
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~-~~~n~~r 299 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKK-LQENAQR 299 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHH-HHHHHHH
Confidence 46889999999999999887753 2 3589999999999855 2344443
No 149
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.56 E-value=0.00022 Score=67.62 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=30.3
Q ss_pred CEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716 119 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 154 (351)
Q Consensus 119 krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~ 154 (351)
+.++|+|||+|...+.++.. .++|++||.++.||+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~ 69 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLK 69 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHH
Confidence 38999999999888777765 679999999999985
No 150
>PHA03412 putative methyltransferase; Provisional
Probab=97.56 E-value=0.0009 Score=63.53 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=32.8
Q ss_pred CCCEEEEEcccCCHHHHHHHHc----CCCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACLK----GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~----Ga~~V~~TD~s~~vL~~ 155 (351)
.+.+|||+|||+|.+++.++.. +..+|++.|+++.+++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~ 91 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKL 91 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHH
Confidence 4779999999999999988753 33589999999998864
No 151
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.55 E-value=0.0039 Score=58.53 Aligned_cols=148 Identities=18% Similarity=0.262 Sum_probs=95.3
Q ss_pred hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716 96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 173 (351)
Q Consensus 96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~ 173 (351)
+....+..+|.+. ...|+|||+|.+.|.-++..+. .. ..+++.+|++++..+ ..+.|+...
T Consensus 45 ~e~g~~L~~L~~~-------~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~-----~A~~n~~~a----- 107 (219)
T COG4122 45 PETGALLRLLARL-------SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAE-----IARENLAEA----- 107 (219)
T ss_pred hhHHHHHHHHHHh-------cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHH-----HHHHHHHHc-----
Confidence 4444555555544 4789999999999999998875 22 348999999999874 456677643
Q ss_pred cCCCCCCCCcccCCCCceeeee-ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccc
Q 018716 174 RQPESSLTPSRQTLAPSVHFYA-GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKL 252 (351)
Q Consensus 174 ~~~~s~~~p~~~~l~~~v~~~~-gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~l 252 (351)
.+..+|..+. |||-+. ++
T Consensus 108 ------------g~~~~i~~~~~gdal~~---l~---------------------------------------------- 126 (219)
T COG4122 108 ------------GVDDRIELLLGGDALDV---LS---------------------------------------------- 126 (219)
T ss_pred ------------CCcceEEEEecCcHHHH---HH----------------------------------------------
Confidence 1334566655 354331 10
Q ss_pred cCchhhhhccccccCCCCccEEEE-eccccCccCHHHHHHHHHHHcCCCCeEEEEEec--------c---ccccccchHH
Q 018716 253 SGSRAWERASEADQGEGGYDVILL-TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK--------K---NYVGFNNAAR 320 (351)
Q Consensus 253 s~~~~W~~~~e~~~~~~~~DlILa-sDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K--------~---~yfgv~gg~~ 320 (351)
. ...+.||+|.. +| ...++..++.+..+|+ |+|++++-.= . .+--...+++
T Consensus 127 -----------~-~~~~~fDliFIDad----K~~yp~~le~~~~lLr-~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~ 189 (219)
T COG4122 127 -----------R-LLDGSFDLVFIDAD----KADYPEYLERALPLLR-PGGLIVADNVLFGGRVADPSIRDARTQVRGVR 189 (219)
T ss_pred -----------h-ccCCCccEEEEeCC----hhhCHHHHHHHHHHhC-CCcEEEEeecccCCccCCccchhHHHHHHHHH
Confidence 0 12467888875 33 4567777777777887 8898876421 1 1111223578
Q ss_pred HHHHhhhhcCceeeEEee
Q 018716 321 HLRSLVDEEGIFGAHLIK 338 (351)
Q Consensus 321 ~F~~~ve~~G~~~~~~v~ 338 (351)
+|.+.+.++--+...++.
T Consensus 190 ~~~~~~~~~~~~~t~~lP 207 (219)
T COG4122 190 DFNDYLLEDPRYDTVLLP 207 (219)
T ss_pred HHHHHHhhCcCceeEEEe
Confidence 899988887556666665
No 152
>PLN02366 spermidine synthase
Probab=97.54 E-value=0.0011 Score=65.03 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=32.9
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~ 155 (351)
..++||++|||.|.....+++. +..+|++.|+++.|++.
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ 130 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDV 130 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHH
Confidence 4689999999999988777764 35689999999999865
No 153
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.51 E-value=0.0019 Score=65.76 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=42.2
Q ss_pred hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHH
Q 018716 96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVL 162 (351)
Q Consensus 96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~ 162 (351)
.+|..++..|. ..+|.+|||+|||+|..++.++. .+..+|++.|.++.+++.+ ..|+.
T Consensus 225 ~~s~~~~~~L~--------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~-~~n~~ 283 (426)
T TIGR00563 225 ASAQWVATWLA--------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRV-YENLK 283 (426)
T ss_pred HHHHHHHHHhC--------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHHHH
Confidence 45555555553 13678999999999999988775 4445899999999998652 34443
No 154
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=9.6e-05 Score=65.35 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=42.3
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHH
Q 018716 114 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 167 (351)
Q Consensus 114 ~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~ 167 (351)
.++.||.+++||||+|.+++.++..++..|++.|++++.|+.+ .+|.+.
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf-----~rNaeE 93 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIF-----TRNAEE 93 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHH-----hhchHH
Confidence 5699999999999999999888878888999999999999764 556653
No 155
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.49 E-value=0.00088 Score=68.53 Aligned_cols=40 Identities=25% Similarity=0.205 Sum_probs=33.4
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~ 155 (351)
.+|.+|||+|||+|.-++.++.. +..+|++.|+++.+++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~ 277 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQL 277 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence 46889999999999998877742 24589999999999865
No 156
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.47 E-value=0.00077 Score=64.32 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=37.0
Q ss_pred CCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
.+|.+|||+|||+|..++.++. .+ ...|++.|+++.+++. ++.|+.+|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~-~~~n~~~~ 119 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKV-LIANINRC 119 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHH-HHHHHHHc
Confidence 4788999999999999987764 32 3489999999999865 34555544
No 157
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.45 E-value=0.00049 Score=65.96 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=41.7
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
+++. .+++.+.+.. ...++.+|||+|||+|..+..++..+. +|++.|+++.+++.
T Consensus 25 l~~~--~i~~~i~~~l----~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~ 79 (272)
T PRK00274 25 LIDE--NILDKIVDAA----GPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPI 79 (272)
T ss_pred CCCH--HHHHHHHHhc----CCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHH
Confidence 4554 3445555442 224678999999999999999887765 89999999999865
No 158
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.42 E-value=0.00063 Score=68.52 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=38.1
Q ss_pred CCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 118 GKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
+.+|||+-||+|..|+.++.. |+++|++.|+|+..++. +..|+++|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~-i~~N~~~N 92 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVES-IKNNVEYN 92 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence 468999999999999999875 78899999999999854 34555555
No 159
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.41 E-value=0.002 Score=62.80 Aligned_cols=51 Identities=12% Similarity=0.001 Sum_probs=38.9
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.+++.+.+.. ...++.+|||+|||+|..+..++..+ .+|++.|+++.+++.
T Consensus 23 ~i~~~Iv~~~----~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~ 73 (294)
T PTZ00338 23 LVLDKIVEKA----AIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAE 73 (294)
T ss_pred HHHHHHHHhc----CCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHH
Confidence 3444555442 23477899999999999998888765 479999999998854
No 160
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.36 E-value=0.0011 Score=64.12 Aligned_cols=73 Identities=16% Similarity=0.117 Sum_probs=55.5
Q ss_pred ccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHh
Q 018716 93 KCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQA 168 (351)
Q Consensus 93 k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~ 168 (351)
.-||.- .+++++.+...+ ..-+++..+||+|||+|..++.++. .+...|+++|.++..+.+ +..|+++|...+
T Consensus 126 PRpETE-E~V~~Vid~~~~-~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~L-a~eN~qr~~l~g 199 (328)
T KOG2904|consen 126 PRPETE-EWVEAVIDALNN-SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKL-AKENAQRLKLSG 199 (328)
T ss_pred cCccHH-HHHHHHHHHHhh-hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHH-HHHHHHHHhhcC
Confidence 467776 677777665432 2336677999999999999998774 456789999999998854 688999887654
No 161
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.0053 Score=56.28 Aligned_cols=50 Identities=32% Similarity=0.522 Sum_probs=42.5
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.|.++|... .+.|.++|||=||+|.+|+-|+..|++++++.|.|...+..
T Consensus 32 alFNil~~~------~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~ 81 (187)
T COG0742 32 ALFNILAPD------EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKI 81 (187)
T ss_pred HHHHhcccc------ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHH
Confidence 455666431 37999999999999999999999999999999999998854
No 162
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.08 E-value=0.0015 Score=64.64 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=35.8
Q ss_pred CCCEEEEEcccCCHHHHHHH-HcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 117 RGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa-~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
.+.+|||||||+|.+...++ .....+++++|+++.+++. ...|+..|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~-A~~Nv~~N 161 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALAS-AQAIISAN 161 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHH-HHHHHHhc
Confidence 46799999999986655444 3333489999999999965 56777777
No 163
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.05 E-value=0.0021 Score=60.31 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=32.8
Q ss_pred CCCCEEEEEcccCCHHHHHHH-HcCCCEEEEEcCChHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIR 154 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa-~~Ga~~V~~TD~s~~vL~ 154 (351)
..-.+|.|||||+|..+-.++ +.....+++.|-|++||+
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla 68 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLA 68 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHH
Confidence 456799999999999987766 455669999999999985
No 164
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.95 E-value=0.016 Score=55.37 Aligned_cols=138 Identities=15% Similarity=0.234 Sum_probs=84.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 193 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~ 193 (351)
.+-++|||||+++|.-++.++.. + ..+|+..|.+++..+. . +.|+..+ .+..+|++
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~-A----r~~~~~a-----------------g~~~~I~~ 135 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYEL-G----LPVIQKA-----------------GVAHKIDF 135 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHH-H----HHHHHHC-----------------CCCCceEE
Confidence 46789999999999999988752 2 2489999999987643 2 3333321 13457888
Q ss_pred eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716 194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 273 (351)
Q Consensus 194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl 273 (351)
..|+..+. +.... +.....++||+
T Consensus 136 ~~G~a~e~---L~~l~-----------------------------------------------------~~~~~~~~fD~ 159 (247)
T PLN02589 136 REGPALPV---LDQMI-----------------------------------------------------EDGKYHGTFDF 159 (247)
T ss_pred EeccHHHH---HHHHH-----------------------------------------------------hccccCCcccE
Confidence 77764331 11000 00001357998
Q ss_pred EEE-eccccCccCHHHHHHHHHHHcCCCCeEEEEEecccccc----------------ccchHHHHHHhhhhcCceeeEE
Q 018716 274 ILL-TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG----------------FNNAARHLRSLVDEEGIFGAHL 336 (351)
Q Consensus 274 ILa-sDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfg----------------v~gg~~~F~~~ve~~G~~~~~~ 336 (351)
|.. +| ...+...++.+.++|+ |+|++.+= --...| ...++++|.+.+.++--|.+.+
T Consensus 160 iFiDad----K~~Y~~y~~~~l~ll~-~GGviv~D-Nvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~l 233 (247)
T PLN02589 160 IFVDAD----KDNYINYHKRLIDLVK-VGGVIGYD-NTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICM 233 (247)
T ss_pred EEecCC----HHHhHHHHHHHHHhcC-CCeEEEEc-CCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 876 33 6667888888888886 88875532 111111 0113668888888776666665
Q ss_pred e
Q 018716 337 I 337 (351)
Q Consensus 337 v 337 (351)
+
T Consensus 234 l 234 (247)
T PLN02589 234 L 234 (247)
T ss_pred E
Confidence 4
No 165
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.92 E-value=0.0046 Score=58.78 Aligned_cols=51 Identities=18% Similarity=0.108 Sum_probs=39.8
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.+++.+.+.. ...++.+|||+|||+|..++.++..+ .+|++.|+++.+++.
T Consensus 16 ~~~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~ 66 (258)
T PRK14896 16 RVVDRIVEYA----EDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEF 66 (258)
T ss_pred HHHHHHHHhc----CCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHH
Confidence 4455555542 23468899999999999999998775 489999999998864
No 166
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.88 E-value=0.0058 Score=56.78 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=30.7
Q ss_pred CCCCCEEEEEcccCCHHHHHHHH-cCC-CEEEEEcCChHHHHh
Q 018716 115 SFRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRC 155 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~aa~-~Ga-~~V~~TD~s~~vL~~ 155 (351)
.-+|.+|||+|||+|..+-.++. .|. ..|+..|.++.+.+.
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~ 112 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAER 112 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHH
Confidence 45889999999999999877664 453 369999999988754
No 167
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0063 Score=56.69 Aligned_cols=54 Identities=20% Similarity=0.132 Sum_probs=38.8
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 97 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 97 as~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
++-.+...|...+ ..-++.+|||+|||+|..+-.+++... +|+..+..++..+.
T Consensus 56 s~P~~vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~ 109 (209)
T COG2518 56 SAPHMVARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQ 109 (209)
T ss_pred cCcHHHHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHH
Confidence 3334444444442 345789999999999999888887643 89999999976643
No 168
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.82 E-value=0.02 Score=55.14 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=31.7
Q ss_pred CCCCEEEEEcccCCHHHHHHHH-c------CCCEEEEEcCChHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACL-K------GAGTVHFQDLSAETI 153 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~-~------Ga~~V~~TD~s~~vL 153 (351)
..+++|||++||||-...-+.. . +.++|+..|+|++||
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL 143 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML 143 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence 5679999999999998877654 1 237899999999998
No 169
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.78 E-value=0.03 Score=52.03 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=43.7
Q ss_pred CCCCccEEEEeccccCc--cCHHHHHHHHHHHcCCCCeEEEEEeccccccc--cchHHHHHHhhhhc
Q 018716 267 GEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF--NNAARHLRSLVDEE 329 (351)
Q Consensus 267 ~~~~~DlILasDviY~~--~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv--~gg~~~F~~~ve~~ 329 (351)
....||.|+++-++--. +..+.|++...++|+ ++|..++-..-.|-|. ..+-.+|-..++++
T Consensus 99 ~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r 164 (204)
T PF06080_consen 99 SPESFDAIFCINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYGPFNRDGKFTSESNAAFDASLRSR 164 (204)
T ss_pred CCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC
Confidence 46789999999998754 457789999999997 8888776533233232 34667777777664
No 170
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.78 E-value=0.034 Score=53.83 Aligned_cols=160 Identities=19% Similarity=0.280 Sum_probs=92.7
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 195 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~ 195 (351)
..+.+||-=|||.|-+..-+|..|. .+.+.+.|--|+ +..|..+|...... +-.+..+.
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Ml---l~s~fiLn~~~~~~-----------------~~~I~Pf~ 113 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFML---LASNFILNHCSQPN-----------------QFTIYPFV 113 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHH---HHHHHHHcccCCCC-----------------cEEEecce
Confidence 4567999999999999998888898 899999999987 34788877532100 01122223
Q ss_pred ccCCCCcc---hhhhhc-ccc--c-cccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCC
Q 018716 196 GDWEELPT---VLSVVR-NDV--S-EVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGE 268 (351)
Q Consensus 196 gdW~~~~~---~l~~~~-~d~--~-~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~ 268 (351)
..|....+ .+..+. .|. . ....+-+++++..||.+-. ......
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y------------------------------~~~~~~ 163 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVY------------------------------GPDENK 163 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEec------------------------------CCcccC
Confidence 33333211 000000 000 0 0112334555555553311 001235
Q ss_pred CCccEEEEeccccCccCHHHHH---HHHHHHcCCCCeEEEEE--ecccccc---------ccchHHHHHHhhhhcCc
Q 018716 269 GGYDVILLTEIPYSVTSLKKLY---LLIKKCLRPPYGVVYLA--TKKNYVG---------FNNAARHLRSLVDEEGI 331 (351)
Q Consensus 269 ~~~DlILasDviY~~~~~~~L~---~~l~~~L~~p~gv~ylA--~K~~yfg---------v~gg~~~F~~~ve~~G~ 331 (351)
+.||.|+.+ |+.+..++++ ++|.++|+ |+| .||= -=.+.|. +.=+.++.+..+++.|+
T Consensus 164 ~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLk-pgG-~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF 235 (270)
T PF07942_consen 164 GSFDVVVTC---FFIDTAENIIEYIETIEHLLK-PGG-YWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGF 235 (270)
T ss_pred CcccEEEEE---EEeechHHHHHHHHHHHHHhc-cCC-EEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCC
Confidence 799999998 8888777655 56667887 888 4442 2222221 11257888899999897
No 171
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.77 E-value=0.0057 Score=57.64 Aligned_cols=66 Identities=17% Similarity=0.041 Sum_probs=47.5
Q ss_pred CCCCCCCCcccchhH---HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 84 ISSKPDGFLKCWESS---IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 84 ~~g~y~gG~k~Weas---~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
...+|..+-.-|+.. -.|.+|+.... .-++.|||..|||.|.-.+.++..|. +|++.|+++..++.
T Consensus 12 W~~rw~~~~~~f~~~~pnp~L~~~~~~l~-----~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~ 80 (226)
T PRK13256 12 WLDRWQNDDVGFCQESPNEFLVKHFSKLN-----INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLS 80 (226)
T ss_pred HHHHHhcCCCCCccCCCCHHHHHHHHhcC-----CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHH
Confidence 334444444455332 46667765431 12578999999999999999999998 69999999988754
No 172
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.75 E-value=0.019 Score=54.87 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=36.7
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716 114 LSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 114 ~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~ 155 (351)
..|.++.+||+||-+|.+++.+++ .|+..|.+.|+++..++.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~ 97 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQR 97 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHH
Confidence 458999999999999999999886 788899999999966643
No 173
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.68 E-value=0.0086 Score=56.57 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=33.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.++.+|||+|||+|..+..++..+. +|++.|+++.+++.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~ 66 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEI 66 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHH
Confidence 4678999999999999999887764 79999999998754
No 174
>PLN02823 spermine synthase
Probab=96.63 E-value=0.043 Score=54.60 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=32.8
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~ 155 (351)
..++||.||+|.|.....+++. +..+|++.|+++++++.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~l 142 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDF 142 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHH
Confidence 4579999999999888777663 46789999999999865
No 175
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.57 E-value=0.05 Score=49.68 Aligned_cols=36 Identities=28% Similarity=0.527 Sum_probs=29.1
Q ss_pred CCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHH
Q 018716 118 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETI 153 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL 153 (351)
+.+++|+|+|.|+|||.++.. ...++++.|-+..=.
T Consensus 49 ~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~ 85 (184)
T PF02527_consen 49 GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV 85 (184)
T ss_dssp CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH
T ss_pred CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH
Confidence 338999999999999988753 445899999887644
No 176
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.57 E-value=0.016 Score=54.01 Aligned_cols=37 Identities=24% Similarity=0.157 Sum_probs=27.1
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHH
Q 018716 117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIR 154 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~ 154 (351)
..++|+|+|+|+|..++.+++. ...++++.|. |++++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~ 137 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIE 137 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHC
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhh
Confidence 4569999999999999888753 3458999998 44653
No 177
>PRK00536 speE spermidine synthase; Provisional
Probab=96.56 E-value=0.025 Score=54.49 Aligned_cols=39 Identities=13% Similarity=-0.118 Sum_probs=33.5
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhh
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 156 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~ 156 (351)
.-+|||=+|.|=|..-.-+++.. .+|++.|++++|++.+
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~ 110 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSF 110 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHH
Confidence 45899999999998888888764 4999999999999764
No 178
>PHA01634 hypothetical protein
Probab=96.48 E-value=0.0057 Score=53.12 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=45.1
Q ss_pred CCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 113 QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 113 ~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
..++++|+|+++|++.|--+|+.++.||+.|++...++...+. ...|++.|.
T Consensus 24 ~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~-~een~k~nn 75 (156)
T PHA01634 24 MLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKK-WEEVCAYFN 75 (156)
T ss_pred heeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHH-HHHHhhhhe
Confidence 4678999999999999999999999999999999999976654 466777773
No 179
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.11 Score=49.95 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=37.7
Q ss_pred CCCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHhhhHHHHH
Q 018716 115 SFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVL 162 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~~t~~Nv~ 162 (351)
..+|+||||-|.|+|.++.+++. .| ..+|+.-|+.++.++. .+.|+.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~-A~~Nl~ 140 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKT-ARENLS 140 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHH-HHHHHH
Confidence 47999999999999999999884 33 3689999999998864 344444
No 180
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.40 E-value=0.0073 Score=55.85 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=37.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
.+|.+|+|+-||.|-.++.+++ ..++.|++.|.||..++. +..|+++|-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~-L~~Ni~lNk 149 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEY-LKENIRLNK 149 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHH-HHHHHHHTT
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHH-HHHHHHHcC
Confidence 4688999999999999999997 335689999999999976 468888874
No 181
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.30 E-value=0.0061 Score=57.51 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=33.4
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
...-|||+|||+||.|-.+...| ..+++.|+|+.||+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~ 87 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQ 87 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHH
Confidence 45689999999999998888778 489999999999965
No 182
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.06 E-value=0.064 Score=51.84 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=35.2
Q ss_pred CCCCccEEEEecc-ccCc-cCHHHHHHHHHHHcCCCCeEEEEEeccc
Q 018716 267 GEGGYDVILLTEI-PYSV-TSLKKLYLLIKKCLRPPYGVVYLATKKN 311 (351)
Q Consensus 267 ~~~~~DlILasDv-iY~~-~~~~~L~~~l~~~L~~p~gv~ylA~K~~ 311 (351)
..++||+|++=.| ||.. +....+++.+...|+ |+|..+++.--.
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~LflG~sE~ 244 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFLGHSET 244 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEEccCcc
Confidence 4578999999886 4554 556789999999997 999999986544
No 183
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.02 E-value=0.17 Score=48.79 Aligned_cols=60 Identities=22% Similarity=0.173 Sum_probs=41.7
Q ss_pred chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-c-CCCEEEEEcCChHHHH
Q 018716 95 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-K-GAGTVHFQDLSAETIR 154 (351)
Q Consensus 95 Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~-Ga~~V~~TD~s~~vL~ 154 (351)
.++...-+..+.+.++.....|..++|||+|||.|-...++.. . ...++++.|.|+.|++
T Consensus 11 ~p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~ 72 (274)
T PF09243_consen 11 MPATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLE 72 (274)
T ss_pred hhHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHH
Confidence 3444555555555555444578899999999999865544432 2 3568999999999875
No 184
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=95.88 E-value=0.28 Score=46.93 Aligned_cols=48 Identities=25% Similarity=0.231 Sum_probs=33.6
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716 114 LSFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLANLE 166 (351)
Q Consensus 114 ~~~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~ 166 (351)
...+|.+|||-|.|+|.++++++. .| ..+|+--|+.++..+ +.+.|+.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~-----~A~~n~~ 86 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAE-----KARKNFE 86 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHH-----HHHHHHH
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHH-----HHHHHHH
Confidence 346899999999999999999885 22 358999999999874 3455554
No 185
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.81 E-value=0.018 Score=48.81 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=34.7
Q ss_pred EEEEEcccCCHHHHHHHHcCCC-EEEEEcCChHHHHhhhHHHHHHH
Q 018716 120 RVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 120 rVLELGcGtGL~gl~aa~~Ga~-~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
.|||+|||.|..++.++..+.. +|++.|.++.+++.+ +.|+..|
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l-~~~~~~n 45 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEIL-EENVKLN 45 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHH-HHHHHHc
Confidence 4899999999999988876643 899999999988542 4555544
No 186
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.72 E-value=0.1 Score=48.47 Aligned_cols=39 Identities=18% Similarity=0.102 Sum_probs=27.7
Q ss_pred CCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIR 154 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~ 154 (351)
-++...+|||||.|-+-+.+++ .+.++.++.++.+...+
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~ 80 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHD 80 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHH
Confidence 3577999999999999887774 67778999999997653
No 187
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.62 E-value=0.64 Score=44.38 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=90.5
Q ss_pred CCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716 88 PDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLE 166 (351)
Q Consensus 88 y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~ 166 (351)
|.-+..+++.++.=+.+|.+. .++.||+||=+| =-=|.||++++.+ .++|+..|+++.+++. |.....
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~-----gdL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~f-----I~~~a~ 88 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAER-----GDLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDF-----INRVAE 88 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHT-----T-STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHH-----HHHHHH
T ss_pred cccccccHHHHHHHHHHHHhc-----CcccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHH-----HHHHHH
Confidence 344567899999999999876 568999999999 5568899888643 5699999999988854 232222
Q ss_pred HhhhhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 018716 167 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS 246 (351)
Q Consensus 167 ~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~ 246 (351)
.. .+ .++.+..|....
T Consensus 89 ~~-----------------gl--~i~~~~~DlR~~--------------------------------------------- 104 (243)
T PF01861_consen 89 EE-----------------GL--PIEAVHYDLRDP--------------------------------------------- 104 (243)
T ss_dssp HH-----------------T----EEEE---TTS----------------------------------------------
T ss_pred Hc-----------------CC--ceEEEEeccccc---------------------------------------------
Confidence 11 01 244433332221
Q ss_pred cccccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhh
Q 018716 247 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV 326 (351)
Q Consensus 247 ~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~v 326 (351)
|+. .-.++||+++ +|=.|-.+.+..++.-=-.+|+.+++..|++....-- ...-..++-+.+
T Consensus 105 -----LP~-----------~~~~~fD~f~-TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-s~~~~~~~Q~~l 166 (243)
T PF01861_consen 105 -----LPE-----------ELRGKFDVFF-TDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-SPDKWLEVQRFL 166 (243)
T ss_dssp -------T-----------TTSS-BSEEE-E---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT---HHHHHHHHHHH
T ss_pred -----CCH-----------HHhcCCCEEE-eCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC-cHHHHHHHHHHH
Confidence 110 1357899876 6899998888887776666788677788988544310 001123455666
Q ss_pred hhcCceeeEEeeecCCccee
Q 018716 327 DEEGIFGAHLIKEMTDRDIW 346 (351)
Q Consensus 327 e~~G~~~~~~v~e~~d~~i~ 346 (351)
-+.|++-..++..+..-+-|
T Consensus 167 ~~~gl~i~dii~~Fn~Y~ga 186 (243)
T PF01861_consen 167 LEMGLVITDIIPDFNRYEGA 186 (243)
T ss_dssp HTS--EEEEEEEEEEEB---
T ss_pred HHCCcCHHHHHhhhcccccc
Confidence 67899888888777654444
No 188
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.46 E-value=0.04 Score=50.06 Aligned_cols=61 Identities=21% Similarity=0.087 Sum_probs=48.8
Q ss_pred CCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC--CCEEEEEcCChHHHHh
Q 018716 90 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRC 155 (351)
Q Consensus 90 gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G--a~~V~~TD~s~~vL~~ 155 (351)
-|. +-++|-.+|+-|.+.+ ..-.|+-|||+|.|||...-+....| ...+++.+++++....
T Consensus 26 VGa-I~PsSs~lA~~M~s~I----~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~ 88 (194)
T COG3963 26 VGA-ILPSSSILARKMASVI----DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCH 88 (194)
T ss_pred eee-ecCCcHHHHHHHHhcc----CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHH
Confidence 443 5677778999998874 33478899999999999998888766 3579999999998854
No 189
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.45 E-value=0.06 Score=51.38 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=27.6
Q ss_pred EEEEEcccCCHHHHHHHHcC---CCEEEEEcCChHHHHh
Q 018716 120 RVLELSCGYGLPGIFACLKG---AGTVHFQDLSAETIRC 155 (351)
Q Consensus 120 rVLELGcGtGL~gl~aa~~G---a~~V~~TD~s~~vL~~ 155 (351)
+|||+|||.|-...-+.+-. .-.|++.|+++..++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~ 112 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL 112 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH
Confidence 79999999997766555421 1379999999998854
No 190
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.41 E-value=0.16 Score=50.88 Aligned_cols=35 Identities=20% Similarity=0.088 Sum_probs=31.3
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCCh
Q 018716 115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA 150 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~ 150 (351)
..+|+++|||||++|.-+-.+...|+ +|++.|..+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~ 243 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP 243 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh
Confidence 46899999999999999999888888 899999665
No 191
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.32 E-value=0.04 Score=52.38 Aligned_cols=54 Identities=22% Similarity=0.221 Sum_probs=47.5
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChH
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAE 151 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~ 151 (351)
+-.+++-|.+.|.+. ..+++|+++||+|+.||-.+-++...||++|++.|..-.
T Consensus 60 VSRG~~KL~~ale~F----~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~ 113 (245)
T COG1189 60 VSRGGLKLEKALEEF----ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG 113 (245)
T ss_pred cccHHHHHHHHHHhc----CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC
Confidence 456788899988876 477999999999999999999999999999999998764
No 192
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.90 E-value=0.11 Score=44.67 Aligned_cols=55 Identities=15% Similarity=0.037 Sum_probs=38.3
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-----cCCCEEEEEcCChHHHH
Q 018716 100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-----KGAGTVHFQDLSAETIR 154 (351)
Q Consensus 100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-----~Ga~~V~~TD~s~~vL~ 154 (351)
.+++++....+......+..+|+|+|||.|.+|.+++. ....+|++.|.++..++
T Consensus 8 ~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~ 67 (141)
T PF13679_consen 8 RMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVE 67 (141)
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHH
Confidence 34455544332111235677999999999999998886 33458999999997654
No 193
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=94.87 E-value=0.34 Score=44.40 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=28.8
Q ss_pred CCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716 118 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~ 155 (351)
...+||||||.|-.-+..|. .....+++.|+....+..
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~ 56 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAK 56 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHH
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHH
Confidence 34899999999998888775 344689999999987754
No 194
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=94.75 E-value=0.13 Score=50.08 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=34.1
Q ss_pred CCCccEEEEeccc-c-CccCHHHHHHHHHHHcCCCCeEEEEEeccc
Q 018716 268 EGGYDVILLTEIP-Y-SVTSLKKLYLLIKKCLRPPYGVVYLATKKN 311 (351)
Q Consensus 268 ~~~~DlILasDvi-Y-~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~ 311 (351)
.++||+|++-.++ | +++....+++.+..+|+ |+|..+++..-.
T Consensus 221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L~lG~sEs 265 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK-PDGLLFAGHSEN 265 (287)
T ss_pred CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC-CCcEEEEeCccc
Confidence 4789999997665 4 44567889999999997 999988886543
No 195
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=94.72 E-value=0.053 Score=51.65 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=33.3
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
....+++||||.|-+.-.+...|..+++.+|.+..|++.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s 110 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKS 110 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHH
Confidence 456899999999988877776778899999999999854
No 196
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=94.63 E-value=0.77 Score=43.57 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=30.4
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhh
Q 018716 117 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 156 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~ 156 (351)
+.++||-||-|.|...-.+.+.. ..+|++.|+++.+++.+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a 116 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELA 116 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHH
Confidence 67899999999998776666543 57999999999998653
No 197
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.60 E-value=0.096 Score=52.26 Aligned_cols=65 Identities=22% Similarity=0.136 Sum_probs=43.4
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
-+.....|.+++..... ..+.+||||=||+|..|+.+|.. +++|++.+.++.+++. ...|..+|.
T Consensus 178 N~~~~~~l~~~~~~~l~-----~~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~-A~~Na~~N~ 242 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLD-----LSKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVED-ARENAKLNG 242 (352)
T ss_dssp BHHHHHHHHHHHHHHCT-----T-TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHH-HHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhh-----cCCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHH-HHHHHHHcC
Confidence 34445566666665531 22338999999999999999976 4589999999998854 244555443
No 198
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.48 E-value=0.12 Score=51.65 Aligned_cols=51 Identities=24% Similarity=0.250 Sum_probs=44.9
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716 115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 166 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~ 166 (351)
...|.+|+|+=||.|-.++.+|+.|+.+|++.|+||..++. +..|+++|-.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~-L~eNi~LN~v 236 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY-LKENIRLNKV 236 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHH-HHHHHHhcCc
Confidence 35699999999999999999999998679999999999976 5788888853
No 199
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.13 E-value=0.14 Score=47.19 Aligned_cols=43 Identities=19% Similarity=0.440 Sum_probs=29.7
Q ss_pred CCCCccEEEEeccc-cC-ccCHHHHHHHHHHHcCCCCeEEEEEecc
Q 018716 267 GEGGYDVILLTEIP-YS-VTSLKKLYLLIKKCLRPPYGVVYLATKK 310 (351)
Q Consensus 267 ~~~~~DlILasDvi-Y~-~~~~~~L~~~l~~~L~~p~gv~ylA~K~ 310 (351)
..++||+|++-.|+ |. ++....+++.+..+|+ |+|..+++..-
T Consensus 133 ~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~lG~sE 177 (196)
T PF01739_consen 133 PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFLGHSE 177 (196)
T ss_dssp ----EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE-TT-
T ss_pred ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEEecCc
Confidence 46789999998874 44 4556789999999997 99999998644
No 200
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.00 E-value=0.15 Score=45.89 Aligned_cols=60 Identities=30% Similarity=0.395 Sum_probs=42.8
Q ss_pred CEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeeccC
Q 018716 119 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDW 198 (351)
Q Consensus 119 krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW 198 (351)
+.|+|+-||.|.-.+..|+.. .+|++.|+++..+++ .+.|...-- ...+|.|+.+||
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~-----a~hNa~vYG-----------------v~~~I~~i~gD~ 57 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLEC-----AKHNAEVYG-----------------VADNIDFICGDF 57 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHH-----HHHHHHHTT------------------GGGEEEEES-H
T ss_pred CEEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHH-----HHHHHHHcC-----------------CCCcEEEEeCCH
Confidence 369999999999999999874 589999999998865 344544220 134799999999
Q ss_pred CCC
Q 018716 199 EEL 201 (351)
Q Consensus 199 ~~~ 201 (351)
.+.
T Consensus 58 ~~~ 60 (163)
T PF09445_consen 58 FEL 60 (163)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 201
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=93.98 E-value=0.089 Score=50.23 Aligned_cols=40 Identities=30% Similarity=0.357 Sum_probs=36.5
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
-+|.+|||-=-|.|-..+.++..||.+|+-.+.++.+|++
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeL 172 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLEL 172 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEe
Confidence 3799999999999999999999999999999999999865
No 202
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=93.71 E-value=0.0082 Score=56.23 Aligned_cols=53 Identities=15% Similarity=0.005 Sum_probs=36.8
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
...++|.-.- .......+++||||||-|-++...+-. ..+|++|+.|..|..+
T Consensus 97 QF~klL~i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~r 149 (288)
T KOG3987|consen 97 QFRKLLVIGG--PAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDR 149 (288)
T ss_pred HHHHHHhcCC--CccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHH
Confidence 5556554331 112345689999999999998777643 4579999999888644
No 203
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=93.69 E-value=0.8 Score=49.88 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=26.4
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH
Q 018716 99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL 137 (351)
Q Consensus 99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~ 137 (351)
..||..|.... ...-.+..++|-.||+|-..|-+++
T Consensus 175 etlAaa~l~~a---~w~~~~~~l~DP~CGSGTilIEAa~ 210 (702)
T PRK11783 175 ENLAAAILLRS---GWPQEGTPLLDPMCGSGTLLIEAAM 210 (702)
T ss_pred HHHHHHHHHHc---CCCCCCCeEEccCCCccHHHHHHHH
Confidence 57777777652 1213578999999999999988765
No 204
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=93.26 E-value=0.22 Score=47.37 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=41.4
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
..+++.+.+.+. ..++..|||+|+|+|..+..++..+ ++|++.++++.+.+.
T Consensus 16 ~~~~~~Iv~~~~----~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~ 67 (262)
T PF00398_consen 16 PNIADKIVDALD----LSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKH 67 (262)
T ss_dssp HHHHHHHHHHHT----CGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHH
T ss_pred HHHHHHHHHhcC----CCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHH
Confidence 456666666542 2378999999999999999998877 699999999987644
No 205
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.19 E-value=1.4 Score=41.59 Aligned_cols=64 Identities=25% Similarity=0.437 Sum_probs=47.2
Q ss_pred CCCCccEEEEeccccCccCHHHHHHHHH---HHcCCCCeE-----EEEE------eccccccccchHHHHHHhhhhcCce
Q 018716 267 GEGGYDVILLTEIPYSVTSLKKLYLLIK---KCLRPPYGV-----VYLA------TKKNYVGFNNAARHLRSLVDEEGIF 332 (351)
Q Consensus 267 ~~~~~DlILasDviY~~~~~~~L~~~l~---~~L~~p~gv-----~ylA------~K~~yfgv~gg~~~F~~~ve~~G~~ 332 (351)
..+.||+|..|=++-..+....=-+.++ ++|+ |+|. .++. ...||+ ....|.+.|+.-|+.
T Consensus 101 ~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~-~~g~~~~~~LFlVlP~~Cv~NSRy~----~~~~l~~im~~LGf~ 175 (219)
T PF11968_consen 101 ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLK-PPGLSLFPSLFLVLPLPCVTNSRYM----TEERLREIMESLGFT 175 (219)
T ss_pred cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhC-CCCccCcceEEEEeCchHhhccccc----CHHHHHHHHHhCCcE
Confidence 3578999999999988877665444444 4576 7777 6665 456776 468999999999985
Q ss_pred eeE
Q 018716 333 GAH 335 (351)
Q Consensus 333 ~~~ 335 (351)
.++
T Consensus 176 ~~~ 178 (219)
T PF11968_consen 176 RVK 178 (219)
T ss_pred EEE
Confidence 554
No 206
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.18 E-value=0.23 Score=51.16 Aligned_cols=48 Identities=33% Similarity=0.463 Sum_probs=39.1
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
.++.+||||=||.|..|+.+|.. +.+|+++++++++++. ...|.++|.
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~-A~~NA~~n~ 339 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEA-AQENAAANG 339 (432)
T ss_pred cCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHH-HHHHHHHcC
Confidence 46789999999999999999964 5699999999999865 345555553
No 207
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=93.14 E-value=1.8 Score=38.94 Aligned_cols=52 Identities=27% Similarity=0.245 Sum_probs=35.6
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC--CC--------EEEEEcCChHHHHh
Q 018716 100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG--AG--------TVHFQDLSAETIRC 155 (351)
Q Consensus 100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G--a~--------~V~~TD~s~~vL~~ 155 (351)
.||..|.+.. ..-++..|||-=||+|-.-|-++..+ .. ++++.|+++.+++.
T Consensus 15 ~lA~~ll~la----~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~ 76 (179)
T PF01170_consen 15 TLAAALLNLA----GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRG 76 (179)
T ss_dssp HHHHHHHHHT----T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHH
T ss_pred HHHHHHHHHh----CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHH
Confidence 5666666653 12367799999999999988887643 22 38899999999854
No 208
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=93.00 E-value=0.24 Score=47.75 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=40.8
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
+++..+ .+.+.+.. ...++.+|||+|+|.|-++..++..++ +|++.++++.++..
T Consensus 13 L~d~~v--~~kIv~~a----~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~ 67 (259)
T COG0030 13 LIDKNV--IDKIVEAA----NISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEV 67 (259)
T ss_pred ccCHHH--HHHHHHhc----CCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHH
Confidence 555542 44444442 234578999999999999999998865 79999999987743
No 209
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=92.90 E-value=0.12 Score=48.25 Aligned_cols=58 Identities=29% Similarity=0.361 Sum_probs=42.8
Q ss_pred cccchh---HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 92 LKCWES---SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 92 ~k~Wea---s~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
..-|+. +-.|.+++... ..-++.|||.-|||.|.=.+.++..|. +|++.|+++..++.
T Consensus 14 ~~~w~~~~~~p~L~~~~~~l-----~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~ 74 (218)
T PF05724_consen 14 QTPWDQGEPNPALVEYLDSL-----ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQ 74 (218)
T ss_dssp --TT--TTSTHHHHHHHHHH-----TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHhc-----CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHH
Confidence 334655 46788888763 124567999999999999999998887 89999999988754
No 210
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=92.78 E-value=1.3 Score=43.17 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=32.3
Q ss_pred CEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHh
Q 018716 119 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 155 (351)
Q Consensus 119 krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~ 155 (351)
++||-||-|.|...-.+++.. ..++++.|+++.+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ 115 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIEL 115 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHH
Confidence 799999999999888888754 5789999999999864
No 211
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=92.77 E-value=2.8 Score=39.48 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=36.6
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCc
Q 018716 268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 331 (351)
Q Consensus 268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~ 331 (351)
++..|+++-+=-+--.+ +...+.--.+.|+ ++|..+||-=+.+|. .+.+|.+.++.-|+
T Consensus 120 ~~svDv~VfcLSLMGTn-~~~fi~EA~RvLK-~~G~L~IAEV~SRf~---~~~~F~~~~~~~GF 178 (219)
T PF05148_consen 120 DESVDVAVFCLSLMGTN-WPDFIREANRVLK-PGGILKIAEVKSRFE---NVKQFIKALKKLGF 178 (219)
T ss_dssp TT-EEEEEEES---SS--HHHHHHHHHHHEE-EEEEEEEEEEGGG-S----HHHHHHHHHCTTE
T ss_pred CCceeEEEEEhhhhCCC-cHHHHHHHHheec-cCcEEEEEEecccCc---CHHHHHHHHHHCCC
Confidence 34456665543333333 3334444455787 999999997666675 68999999999997
No 212
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.49 E-value=0.41 Score=47.06 Aligned_cols=67 Identities=12% Similarity=0.216 Sum_probs=38.6
Q ss_pred hhHHHHHHHHhhhhhcCCCCC-CCCEEEEEcccCC-HHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 96 ESSIDLVNVLKHEIRDGQLSF-RGKRVLELSCGYG-LPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 96 eas~~L~~~L~~~~~~~~~~~-~~krVLELGcGtG-L~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
+.-.....||.+.+....... ...++||+|+|.- +..|..+. .|- ++++||+++..++. ...||..|
T Consensus 80 P~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~-A~~nv~~N 149 (299)
T PF05971_consen 80 PNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLES-ARENVERN 149 (299)
T ss_dssp HHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHH-HHHHHHHT
T ss_pred chhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHH-HHHHHHhc
Confidence 344566666666543222222 2569999999964 44555553 454 89999999999865 35666666
No 213
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=92.39 E-value=0.19 Score=47.10 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=27.9
Q ss_pred CCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChH
Q 018716 118 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAE 151 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~ 151 (351)
+++++|+|+|.|+||+.+|. ....+|++.|-+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K 102 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK 102 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch
Confidence 69999999999999998774 33346999997664
No 214
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=92.10 E-value=1 Score=42.79 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=32.5
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.+|.|||++|-|.|+.--++-.....+-++...+++|++.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~kr 139 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKR 139 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHH
Confidence 5889999999999988777665555566788899999865
No 215
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=92.10 E-value=0.58 Score=44.16 Aligned_cols=37 Identities=16% Similarity=0.046 Sum_probs=29.3
Q ss_pred CEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716 119 KRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 119 krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~ 155 (351)
..+||||||.|-.-+..|.. ....+++.++...++..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~ 87 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAK 87 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHH
Confidence 58999999999888887764 34579999988777643
No 216
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=92.07 E-value=2.8 Score=32.35 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=26.9
Q ss_pred CCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecc
Q 018716 269 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK 310 (351)
Q Consensus 269 ~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~ 310 (351)
..||++ .+...+.......++..+.+.++ |+|.+++....
T Consensus 118 ~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~ 157 (257)
T COG0500 118 ASFDLV-ISLLVLHLLPPAKALRELLRVLK-PGGRLVLSDLL 157 (257)
T ss_pred CceeEE-eeeeehhcCCHHHHHHHHHHhcC-CCcEEEEEecc
Confidence 478999 55555444336777777777786 78888776443
No 217
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=91.80 E-value=0.58 Score=43.43 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=29.9
Q ss_pred EEEEcccCCHHHHHHHHcCC-CEEEEEcCChHHHHh
Q 018716 121 VLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 155 (351)
Q Consensus 121 VLELGcGtGL~gl~aa~~Ga-~~V~~TD~s~~vL~~ 155 (351)
|.|+||-.|.++++++..|. .+++++|+++.-++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~ 36 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEK 36 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence 68999999999999998774 579999999998854
No 218
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=91.75 E-value=0.67 Score=40.75 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=32.8
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716 268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 307 (351)
Q Consensus 268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA 307 (351)
.+.||+|+++-++-+.......++-+.+.|+ |+|.+++.
T Consensus 42 ~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~ 80 (160)
T PLN02232 42 DCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK-PGSRVSIL 80 (160)
T ss_pred CCCeeEEEecchhhcCCCHHHHHHHHHHHcC-cCeEEEEE
Confidence 4679999999888777778888888888997 88988765
No 219
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=91.61 E-value=5.5 Score=40.01 Aligned_cols=75 Identities=25% Similarity=0.131 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHH
Q 018716 80 GSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVP 159 (351)
Q Consensus 80 ~~dl~~g~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~ 159 (351)
..|.-..+|-.-- .-+ -.||+.|.+.. ...+|.+|||==||||-.-+-|.+.|+ +++++|++..|++-
T Consensus 167 ~r~~~kRPf~~p~-s~~--P~lAR~mVNLa----~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~g---- 234 (347)
T COG1041 167 KRDPEKRPFFRPG-SMD--PRLARAMVNLA----RVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRG---- 234 (347)
T ss_pred hcCcccCCccCcC-CcC--HHHHHHHHHHh----ccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhh----
Confidence 4455444544321 112 36777777653 346889999999999999999999998 89999999999865
Q ss_pred HHHHHHHH
Q 018716 160 NVLANLEQ 167 (351)
Q Consensus 160 Nv~lN~~~ 167 (351)
.+.|+..
T Consensus 235 -ak~Nl~~ 241 (347)
T COG1041 235 -AKINLEY 241 (347)
T ss_pred -hhhhhhh
Confidence 5666653
No 220
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=91.01 E-value=0.51 Score=46.95 Aligned_cols=58 Identities=24% Similarity=0.232 Sum_probs=34.8
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCH-HHHHHHHcCCCEEEEEcCChHHHHhh
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAETIRCT 156 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL-~gl~aa~~Ga~~V~~TD~s~~vL~~~ 156 (351)
-|=-++.+..++.... ...++.+|||||||-|. +.=. ...+...++++|++.+.++.+
T Consensus 43 NwvKs~LI~~~~~~~~----~~~~~~~VLDl~CGkGGDL~Kw-~~~~i~~~vg~Dis~~si~ea 101 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVK----QNRPGLTVLDLCCGKGGDLQKW-QKAKIKHYVGIDISEESIEEA 101 (331)
T ss_dssp HHHHHHHHHHHCHCCC----CTTTT-EEEEET-TTTTTHHHH-HHTT-SEEEEEES-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhh----ccCCCCeEEEecCCCchhHHHH-HhcCCCEEEEEeCCHHHHHHH
Confidence 5666655555443221 11278899999999664 3333 334678999999999888653
No 221
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=91.00 E-value=0.16 Score=47.18 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=39.0
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 166 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~ 166 (351)
....+-|||+|+|.++++|+.. +.+|++...+|...++ ...|+..|..
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~-a~eN~~v~g~ 79 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARL-AEENLHVPGD 79 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHH-hhhcCCCCCC
Confidence 3467899999999999999987 7899999999987755 4667655543
No 222
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=90.67 E-value=4.5 Score=40.39 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=37.2
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 168 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~ 168 (351)
..-+||-=|||.|-+..-++..|. ++-+-..+-.|+- -.+..+|..+.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli---~S~FiLN~~~~ 197 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLI---CSSFILNYCKQ 197 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHH---HHHHHHHhhcc
Confidence 345899999999999998888776 5666677777773 37888998643
No 223
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=90.63 E-value=0.68 Score=45.19 Aligned_cols=40 Identities=18% Similarity=0.081 Sum_probs=35.0
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.-+...|||+|-|||.++..+...|+ +|++.++++.|+..
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvae 95 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAE 95 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHH
Confidence 45677999999999999999988875 89999999998754
No 224
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=90.41 E-value=1 Score=47.22 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=46.4
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 97 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 97 as~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
++..|-+++.... ..-.++.++|+=||||+.|+.+++ ++++|++..++++.++. ...|.+.|
T Consensus 367 ~aevLys~i~e~~----~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~d-A~~nA~~N 428 (534)
T KOG2187|consen 367 AAEVLYSTIGEWA----GLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVED-AEKNAQIN 428 (534)
T ss_pred HHHHHHHHHHHHh----CCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcch-hhhcchhc
Confidence 4456666666653 334668999999999999999986 57899999999998865 24455444
No 225
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=87.78 E-value=6.6 Score=38.35 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=41.3
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEE
Q 018716 268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 336 (351)
Q Consensus 268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~ 336 (351)
+...||++-+=-+-- ..+..++.-..+.|+ ++|.+|||-=+.+|. .+..|.+.+...||...+.
T Consensus 226 d~svDvaV~CLSLMg-tn~~df~kEa~RiLk-~gG~l~IAEv~SRf~---dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 226 DESVDVAVFCLSLMG-TNLADFIKEANRILK-PGGLLYIAEVKSRFS---DVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred cCcccEEEeeHhhhc-ccHHHHHHHHHHHhc-cCceEEEEehhhhcc---cHHHHHHHHHHcCCeeeeh
Confidence 344555544322221 223444555666787 999999997766674 4566999999999865553
No 226
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=87.75 E-value=0.64 Score=48.11 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=31.4
Q ss_pred EEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 120 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 120 rVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
-||++|.||||+++.|++.|+..|++.+.=..|..+
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~ 104 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDL 104 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHH
Confidence 799999999999999999999999998866656654
No 227
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=87.31 E-value=1.3 Score=39.25 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=36.2
Q ss_pred hHHHHHHHHhhhhhcCC-CCC-CCCEEEEEcccCCHHHHHHHHcC--CCEEEEEcCChH
Q 018716 97 SSIDLVNVLKHEIRDGQ-LSF-RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAE 151 (351)
Q Consensus 97 as~~L~~~L~~~~~~~~-~~~-~~krVLELGcGtGL~gl~aa~~G--a~~V~~TD~s~~ 151 (351)
|+.-|.+.+... . ... .+.+||||||+.|--+-+++..+ ..+|++.|..+.
T Consensus 5 a~~KL~ei~~~~----~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 5 AAFKLYEIDEKF----KIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHHHHTT----SSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHC----CCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 444555555543 2 222 45899999999999998888766 568999999874
No 228
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=86.62 E-value=6.4 Score=40.17 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=32.9
Q ss_pred CCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhh
Q 018716 118 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 156 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~ 156 (351)
-.+||-||-|-|+.-.-+.+. +..+|+..|.+|.|++..
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela 329 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELA 329 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHh
Confidence 458999999999988777765 367999999999999763
No 229
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=86.44 E-value=2.1 Score=44.81 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=30.6
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCC---CEEEEEcccCCHHHHHHHHcCC
Q 018716 94 CWESSIDLVNVLKHEIRDGQLSFRG---KRVLELSCGYGLPGIFACLKGA 140 (351)
Q Consensus 94 ~Weas~~L~~~L~~~~~~~~~~~~~---krVLELGcGtGL~gl~aa~~Ga 140 (351)
...++...++.|.+.+.. ...+ ..+||+|||+|..|-++...+.
T Consensus 94 F~~Ga~~Yid~i~~~~~~---~~~~g~iR~~LDvGcG~aSF~a~l~~r~V 140 (506)
T PF03141_consen 94 FPHGADHYIDQIAEMIPL---IKWGGGIRTALDVGCGVASFGAYLLERNV 140 (506)
T ss_pred ccCCHHHHHHHHHHHhhc---cccCCceEEEEeccceeehhHHHHhhCCc
Confidence 455676777777766421 1222 3789999999999988887765
No 230
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=85.84 E-value=2.1 Score=42.03 Aligned_cols=40 Identities=13% Similarity=-0.026 Sum_probs=33.8
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcC--CCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~G--a~~V~~TD~s~~vL~~ 155 (351)
-++..+||.+||.|--+..++... ..+|++.|.++++++.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ 59 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAA 59 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHH
Confidence 357799999999999999888653 3589999999999864
No 231
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=85.84 E-value=4.2 Score=42.68 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=30.2
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHH
Q 018716 117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIR 154 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~ 154 (351)
.+..+||||||.|-.-+..|.. ....+++.|+....+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~ 385 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVA 385 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHH
Confidence 4668999999999888777754 3457999999887664
No 232
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.59 E-value=1.1 Score=44.55 Aligned_cols=40 Identities=33% Similarity=0.428 Sum_probs=34.2
Q ss_pred CCCCEEEEEccc-CCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCG-YGLPGIFACL-KGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcG-tGL~gl~aa~-~Ga~~V~~TD~s~~vL~~ 155 (351)
-.|.+||=+||| .||..+.+|+ .|+++|+++|..+.-|+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~ 209 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLEL 209 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHH
Confidence 468899999999 4998888775 799999999999987654
No 233
>PRK10742 putative methyltransferase; Provisional
Probab=83.60 E-value=2.6 Score=40.50 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=34.0
Q ss_pred EEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHH
Q 018716 120 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL 162 (351)
Q Consensus 120 rVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~ 162 (351)
+|||+=||+|-.++.++..|+. |++.+.++.+..+ +..|+.
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaal-L~dgL~ 131 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAAL-LDDGLA 131 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHH-HHHHHH
Confidence 8999999999999999988984 9999999976643 344444
No 234
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=82.96 E-value=3.3 Score=39.90 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=39.5
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--------cCCCEEEEEcCChHHHHhhhHHHHHH
Q 018716 99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--------KGAGTVHFQDLSAETIRCTTVPNVLA 163 (351)
Q Consensus 99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~--------~Ga~~V~~TD~s~~vL~~~t~~Nv~l 163 (351)
..++++|.... ....+.+|+|-.||+|-.-+.+.. ....++++.|+++.++.. +.-|+.+
T Consensus 32 ~~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~l-a~~nl~l 99 (311)
T PF02384_consen 32 REIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVAL-AKLNLLL 99 (311)
T ss_dssp HHHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHH-HHHHHHH
T ss_pred HHHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHH-HHhhhhh
Confidence 35666666654 234677999999999988777664 234589999999998855 3344443
No 235
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=81.70 E-value=2.7 Score=44.02 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=30.8
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-----C----CCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIFACLK-----G----AGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~-----G----a~~V~~TD~s~~vL~~ 155 (351)
...+|||.+||+|...+.++.. + ...+++.|+++..++.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~ 78 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKR 78 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHH
Confidence 5579999999999988877631 1 1478999999998854
No 236
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=81.55 E-value=3.5 Score=40.50 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=33.9
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHH
Q 018716 114 LSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETI 153 (351)
Q Consensus 114 ~~~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL 153 (351)
.++.||+|+-+| ---|.|+++++-| +++|...|+++..+
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli 188 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI 188 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH
Confidence 468999999999 7789999999866 67899999999765
No 237
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=79.76 E-value=2.9 Score=42.27 Aligned_cols=46 Identities=30% Similarity=0.393 Sum_probs=40.5
Q ss_pred CCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 118 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
.++|+|-=||||+=||-.+. .+..+|++.|+||+..++ ++.|+++|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avel-ik~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVEL-IKENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHH-HHHHHHhc
Confidence 78999999999999998875 455589999999999975 68999999
No 238
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=77.34 E-value=54 Score=32.50 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=26.4
Q ss_pred CCCEEEEEcccCCHHHHHHHH-c--CCCEEEEEcCChH
Q 018716 117 RGKRVLELSCGYGLPGIFACL-K--GAGTVHFQDLSAE 151 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~-~--Ga~~V~~TD~s~~ 151 (351)
+.-+||++-||+|---+-+.. . ...+|.+.||++.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~ 172 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPI 172 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHH
Confidence 445999999999977554443 2 2468999999994
No 239
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=75.62 E-value=5.9 Score=37.31 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=31.5
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--c-------CCCEEEEEcCChHHH
Q 018716 101 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--K-------GAGTVHFQDLSAETI 153 (351)
Q Consensus 101 L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~--~-------Ga~~V~~TD~s~~vL 153 (351)
++.|+....+.........+|+|+|+|+|.+..-++. . ...++++.+.|+.+-
T Consensus 2 ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~ 63 (252)
T PF02636_consen 2 IARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR 63 (252)
T ss_dssp HHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH
T ss_pred hHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH
Confidence 4566655543221111236999999999988765442 1 235899999999654
No 240
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=74.58 E-value=8.7 Score=33.30 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=27.8
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCH-HHHHHHHcCCCEEEEEcCChH
Q 018716 99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAE 151 (351)
Q Consensus 99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL-~gl~aa~~Ga~~V~~TD~s~~ 151 (351)
.++++|+.+. ....+|+|+|-|-=. +...+...|. .|++||+++.
T Consensus 2 ~~~a~~ia~~-------~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~ 47 (127)
T PF03686_consen 2 VDFAEYIARL-------NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHH-------S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S
T ss_pred chHHHHHHHh-------CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc
Confidence 3688888876 244599999999533 3334445675 8999999984
No 241
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=74.11 E-value=4.1 Score=40.84 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=31.5
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhh
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 156 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~ 156 (351)
++..+++||||-|.=-+---+.|.+.++++|+.+..++++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa 156 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQA 156 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHH
Confidence 5678999999998655555566788999999998777653
No 242
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.98 E-value=5.9 Score=37.46 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=30.5
Q ss_pred CCCCEEEEEcccCCHHHHHHH-HcCC--CEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFAC-LKGA--GTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa-~~Ga--~~V~~TD~s~~vL~~ 155 (351)
.+|.+.|++|+|+|.++-.++ ..|+ ..+++.|.-+++++.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~ 123 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEY 123 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHH
Confidence 689999999999998875555 4333 234899999988864
No 243
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=73.13 E-value=3 Score=41.30 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=57.2
Q ss_pred cccchhHHHHHHHHh--hhhhcCCCCCCCCEEEEEcccCCHHHH-HHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHh
Q 018716 92 LKCWESSIDLVNVLK--HEIRDGQLSFRGKRVLELSCGYGLPGI-FACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 168 (351)
Q Consensus 92 ~k~Weas~~L~~~L~--~~~~~~~~~~~~krVLELGcGtGL~gl-~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~ 168 (351)
..+|+....|..+-- ...+-......+..|.||=||-|-..+ ++..+||+.|++.|.||..++. .+.|++.|....
T Consensus 167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEa-LrR~~~~N~V~~ 245 (351)
T KOG1227|consen 167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEA-LRRNAEANNVMD 245 (351)
T ss_pred EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHH-HHHHHHhcchHH
Confidence 358988877665432 122223345677889999999999998 7778999999999999999976 478888886543
No 244
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=71.64 E-value=5.4 Score=40.45 Aligned_cols=48 Identities=27% Similarity=0.260 Sum_probs=36.7
Q ss_pred CCEEEEEcccCCHHHHHHHH--cCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716 118 GKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLE 166 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~--~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~ 166 (351)
..+|||-=||||+=||-.++ .|..+|++-|+|++.++. +..|+++|..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~-i~~N~~~N~~ 99 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVEL-IKRNLELNGL 99 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHH-HHHHHHHCT-
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHH-HHHhHhhccc
Confidence 45999999999999998775 367799999999999865 5677777754
No 245
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=68.93 E-value=20 Score=37.51 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=34.2
Q ss_pred CCCCEEEEEcccCCHHHHHHHH-c-CCCEEEEEcCChHHHHhhhHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACL-K-GAGTVHFQDLSAETIRCTTVPNVL 162 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~-~-Ga~~V~~TD~s~~vL~~~t~~Nv~ 162 (351)
-+|.+|||+.||.|.=+..++. . +...|++.|+++.-++.+ ..|+.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L-~~nl~ 159 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVL-HANIS 159 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHH-HHHHH
Confidence 4788999999999988776653 3 335899999999887542 34444
No 246
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=68.48 E-value=21 Score=36.09 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=32.5
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 154 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~ 154 (351)
+++..++++|||.|-+..+.+..+...++..|+++.-+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~ 147 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAF 147 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHH
Confidence 566689999999999999988777668999999986553
No 247
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=68.27 E-value=9.7 Score=37.75 Aligned_cols=39 Identities=31% Similarity=0.319 Sum_probs=31.7
Q ss_pred CCCCEEEEEcccC-CHHHHHHHH-cCCCEEEEEcCChHHHH
Q 018716 116 FRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETIR 154 (351)
Q Consensus 116 ~~~krVLELGcGt-GL~gl~aa~-~Ga~~V~~TD~s~~vL~ 154 (351)
..+.+|+=+|||. ||+.+.+++ .|+++|+++|.+++-++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~ 207 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLE 207 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence 4445999999995 888876664 78999999999997664
No 248
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=68.19 E-value=11 Score=36.24 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=30.7
Q ss_pred EEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716 120 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 154 (351)
Q Consensus 120 rVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~ 154 (351)
+|+||-||.|..++.+...|...|.+.|+++...+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~ 36 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAE 36 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHH
Confidence 79999999999887777778888999999998764
No 249
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=67.09 E-value=16 Score=34.69 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=37.2
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 117 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
++.++.|+||=.|.+.+++.+.+ ++.+++.|+++.-++.. +.|+..|
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a-~~~v~~~ 63 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESA-IRNVKKN 63 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHH-HHHHHhc
Confidence 56679999999999999999765 57899999999988542 4444444
No 250
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=66.78 E-value=3.5 Score=39.65 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=27.7
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHH
Q 018716 115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 153 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL 153 (351)
..+|.++||+|||.-+.-+..|..-+.+|+++||.+.-.
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~ 92 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNR 92 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhH
Confidence 467889999999987776666655567899999998544
No 251
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=66.51 E-value=14 Score=36.65 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=27.6
Q ss_pred CCCEEEEEcccCCHHHHH-H-HH--cC-CCEEEEEcCChHHHHh
Q 018716 117 RGKRVLELSCGYGLPGIF-A-CL--KG-AGTVHFQDLSAETIRC 155 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~-a-a~--~G-a~~V~~TD~s~~vL~~ 155 (351)
++..++|||||.|-=.-. + ++ .+ ...++..|+|.++|+.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~ 119 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQR 119 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHH
Confidence 566899999999874322 2 11 21 3479999999999854
No 252
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=61.35 E-value=18 Score=36.88 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=28.8
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHHc--CCCCeEEEEEe
Q 018716 268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCL--RPPYGVVYLAT 308 (351)
Q Consensus 268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L--~~p~gv~ylA~ 308 (351)
..-|++|+++|=+-....-..+...|.+++ ..|+|...++-
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 456899999988887777666655666542 23778877774
No 253
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=61.11 E-value=17 Score=34.97 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=28.2
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHHc------CCCEEEEEcCCh
Q 018716 114 LSFRGKRVLELSCGYGLPGIFACLK------GAGTVHFQDLSA 150 (351)
Q Consensus 114 ~~~~~krVLELGcGtGL~gl~aa~~------Ga~~V~~TD~s~ 150 (351)
...++..++|+|||.|.++.+++.. ....+++.|-..
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 3356779999999999999887642 245788998754
No 254
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=60.17 E-value=1.5e+02 Score=30.26 Aligned_cols=36 Identities=22% Similarity=0.116 Sum_probs=26.6
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC
Q 018716 100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG 139 (351)
Q Consensus 100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G 139 (351)
.||..|.... ....+..++|-=||+|-.-|-+|+.+
T Consensus 178 tLAaAil~la----gw~~~~pl~DPmCGSGTi~IEAAl~~ 213 (381)
T COG0116 178 TLAAAILLLA----GWKPDEPLLDPMCGSGTILIEAALIA 213 (381)
T ss_pred HHHHHHHHHc----CCCCCCccccCCCCccHHHHHHHHhc
Confidence 5666666542 23455789999999999999888765
No 255
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=59.78 E-value=17 Score=30.79 Aligned_cols=49 Identities=20% Similarity=0.145 Sum_probs=29.9
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcC
Q 018716 99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 148 (351)
Q Consensus 99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~ 148 (351)
+.+|.||...-++.....+...-.|||||-||+--.+..-|. +=.+.|.
T Consensus 40 laIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 40 LAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred HHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 356666665433222222344789999999998877776664 2344453
No 256
>KOG2730 consensus Methylase [General function prediction only]
Probab=59.27 E-value=14 Score=35.27 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=54.8
Q ss_pred chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhcc
Q 018716 95 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 174 (351)
Q Consensus 95 Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~ 174 (351)
|=+-...+.+++..... .+.-.+|++-=||+|...+..++.|. .|+..|++|.=+.+ + +.|++--
T Consensus 75 svTpe~ia~~iA~~v~~---~~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~-A----khNaeiY------ 139 (263)
T KOG2730|consen 75 SVTPEKIAEHIANRVVA---CMNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIAC-A----RHNAEVY------ 139 (263)
T ss_pred EeccHHHHHHHHHHHHH---hcCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHH-H----hccceee------
Confidence 44445666666655321 12456888999999888888777776 89999999976643 2 3333211
Q ss_pred CCCCCCCCcccCCCCceeeeeccCCCCc
Q 018716 175 QPESSLTPSRQTLAPSVHFYAGDWEELP 202 (351)
Q Consensus 175 ~~~s~~~p~~~~l~~~v~~~~gdW~~~~ 202 (351)
..+.+|.|..|||-.+-
T Consensus 140 -----------GI~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 140 -----------GVPDRITFICGDFLDLA 156 (263)
T ss_pred -----------cCCceeEEEechHHHHH
Confidence 13458999999996653
No 257
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=57.45 E-value=17 Score=38.46 Aligned_cols=40 Identities=30% Similarity=0.277 Sum_probs=32.3
Q ss_pred CCCCCEEEEEcccC-CHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716 115 SFRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 115 ~~~~krVLELGcGt-GL~gl~aa~-~Ga~~V~~TD~s~~vL~~ 155 (351)
..++.+|+=+|||. |+..+.+++ .|+ .|+++|.+++.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~ 203 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQ 203 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 35789999999995 777777664 688 79999999987654
No 258
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=56.38 E-value=63 Score=31.23 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=43.7
Q ss_pred CCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHh
Q 018716 90 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRC 155 (351)
Q Consensus 90 gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~ 155 (351)
|.+.+++.+-.++.++... .+|.+|||+-|+-|.=+..++. .+ ...|++.|+++.-+..
T Consensus 65 G~~~vQd~sS~l~~~~L~~-------~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~ 125 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALDP-------QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKR 125 (283)
T ss_dssp TSEEEHHHHHHHHHHHHTT-------TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHH
T ss_pred CcEEecccccccccccccc-------cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHH
Confidence 4456788776666666543 4788999999999987766553 33 4689999999988754
No 259
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=53.09 E-value=2.1e+02 Score=27.21 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=42.8
Q ss_pred cccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHH-HHHHHcCCCEEEEEcCChHHHHhh
Q 018716 92 LKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPG-IFACLKGAGTVHFQDLSAETIRCT 156 (351)
Q Consensus 92 ~k~Weas-~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~g-l~aa~~Ga~~V~~TD~s~~vL~~~ 156 (351)
.+.|+.- --|+..+..-++ ....-+|.+||=||+-+|-.- -.+=-.|...+++..+++.+++.+
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~-~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reL 116 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLK-NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMREL 116 (231)
T ss_pred eeeeCcchhHHHHHHHcCcc-cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHH
Confidence 5688753 245555554332 123457899999999999643 333234555799999999998764
No 260
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=52.39 E-value=38 Score=30.05 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 98 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 98 s~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.+.|++.+.+.. ..+|..|||-=||+|-.+++|...|- +.++.|++++..+.
T Consensus 177 P~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~ 228 (231)
T PF01555_consen 177 PVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEI 228 (231)
T ss_dssp -HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred CHHHHHHHHHhh-----hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 367777777652 45789999999999999999999875 89999999987643
No 261
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=50.00 E-value=36 Score=31.82 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=35.9
Q ss_pred hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CC-CEEEEEcCCh
Q 018716 96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSA 150 (351)
Q Consensus 96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga-~~V~~TD~s~ 150 (351)
.++.-|.+...+. ....++++|+||||--|-=+-+++++ |. ..|++.|+.|
T Consensus 28 RAa~KL~el~~k~----~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 28 RAAYKLLELNEKF----KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred hHHHHHHHHHHhc----CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 3455555555443 34457899999999999888777753 33 2499999988
No 262
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=49.52 E-value=71 Score=32.49 Aligned_cols=56 Identities=13% Similarity=-0.076 Sum_probs=36.3
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH---------cCCCEEEEEcCChHHHHh
Q 018716 99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL---------KGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~---------~Ga~~V~~TD~s~~vL~~ 155 (351)
..++.|+.+.... ........++|||+|+|...--++. ..+.++.+...|++..+.
T Consensus 60 ella~~~~~~wq~-~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~ 124 (370)
T COG1565 60 ELLAEQFLQLWQE-LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRAR 124 (370)
T ss_pred HHHHHHHHHHHHH-hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHH
Confidence 4566666554321 1223456899999999987643321 235689999999986543
No 263
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.15 E-value=31 Score=29.71 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=28.9
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCH-HHHHHHHcCCCEEEEEcCChH
Q 018716 100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAE 151 (351)
Q Consensus 100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL-~gl~aa~~Ga~~V~~TD~s~~ 151 (351)
.++.++.+.. ...+|.|+|.|-=+ +.-.+++.|. .|++||+++.
T Consensus 3 e~a~~iAre~-------~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~ 47 (129)
T COG1255 3 EVAEYIAREN-------ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK 47 (129)
T ss_pred cHHHHHHHHh-------cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc
Confidence 4566776552 33499999998432 2233445675 7999999983
No 264
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=47.89 E-value=26 Score=36.09 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=36.8
Q ss_pred CCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccC-CHHHHHHH-HcCCCEEEEEcCChHHH
Q 018716 86 SKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETI 153 (351)
Q Consensus 86 g~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGt-GL~gl~aa-~~Ga~~V~~TD~s~~vL 153 (351)
..|-+|..+|++ +.+. ....+.|++|+=+|||. |+.....+ ..|+ +|+++|.++.-+
T Consensus 180 n~~g~g~s~~~~-------i~r~---t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~ 238 (413)
T cd00401 180 NLYGCRESLIDG-------IKRA---TDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICA 238 (413)
T ss_pred ccchhchhhHHH-------HHHh---cCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhH
Confidence 456666666643 2222 12347899999999994 54444334 3677 799999988644
No 265
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=45.68 E-value=26 Score=33.08 Aligned_cols=40 Identities=15% Similarity=0.037 Sum_probs=28.8
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
....++||.|||.|-++--+++.-+.+|.+.|..+.+++.
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~ 93 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQ 93 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHH
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHH
Confidence 3567999999999999977665457899999999988743
No 266
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=44.30 E-value=17 Score=36.81 Aligned_cols=81 Identities=20% Similarity=0.183 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh--hh
Q 018716 80 GSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC--TT 157 (351)
Q Consensus 80 ~~dl~~g~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~--~t 157 (351)
.=||+..+|-|. ..-++.+.|. +++. ...-+|+-|.|==.|||..-+.++..|+ .|++||++-.+++. =.
T Consensus 178 ~y~LK~R~yiGn-TSmDAeLSli--~AN~----Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~ 249 (421)
T KOG2671|consen 178 KYDLKKRCYIGN-TSMDAELSLI--MANQ----AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGE 249 (421)
T ss_pred hcccccccccCC-cccchhHHHH--Hhhh----hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCC
Confidence 457788888875 4777764443 3322 1235889999999999988888899997 89999999988761 12
Q ss_pred HHHHHHHHHHh
Q 018716 158 VPNVLANLEQA 168 (351)
Q Consensus 158 ~~Nv~lN~~~~ 168 (351)
..||..|..+-
T Consensus 250 ~~si~aNFkQY 260 (421)
T KOG2671|consen 250 DESIKANFKQY 260 (421)
T ss_pred CcchhHhHHHh
Confidence 36899998865
No 267
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=43.39 E-value=23 Score=32.30 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=30.1
Q ss_pred CCCCccEEEEeccccCccC----HHHHHHHHHHHcCCCCeEEEEEecccccccc
Q 018716 267 GEGGYDVILLTEIPYSVTS----LKKLYLLIKKCLRPPYGVVYLATKKNYVGFN 316 (351)
Q Consensus 267 ~~~~~DlILasDviY~~~~----~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~ 316 (351)
...+||+||-+|+-++.-. -+.-++.|++..+. +|-.+|+.....||.|
T Consensus 64 ~L~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~-GGgLlmigG~~sfg~g 116 (177)
T PF07090_consen 64 ELNRYDVVILSDVPANSLLKSRRSPNQLELLADYVRD-GGGLLMIGGPRSFGPG 116 (177)
T ss_dssp HHCT-SEEEEES--HHHHHT----HHHHHHHHHHHHT-T-EEEEE-STTSSGTT
T ss_pred HHhcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHh-CCEEEEEeChhhcCCC
Confidence 3578999999998775542 46677788888864 5556666666666654
No 268
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=42.60 E-value=43 Score=33.15 Aligned_cols=40 Identities=28% Similarity=0.259 Sum_probs=28.9
Q ss_pred CCCCEEEEEcccC-CHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGt-GL~gl~aa~-~Ga~~V~~TD~s~~vL~~ 155 (351)
.++.+||.+|||. |...+.+++ .|..+|+++|.+++.++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~ 224 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEM 224 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence 5788999998864 555554553 566579999999877643
No 269
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=41.41 E-value=36 Score=32.80 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=25.3
Q ss_pred CCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716 118 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 118 ~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~ 155 (351)
..+|+|||||.==+.+..... ....|++.|++..+++.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~ 144 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEF 144 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHH
Confidence 579999999965554433322 12389999999998864
No 270
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=40.55 E-value=3.1e+02 Score=27.86 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=38.8
Q ss_pred cccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 92 LKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 92 ~k~Weas-~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
++-||++ ..|.+++.... ..+ +|+=|+=.-|-.+..++..+. +..+| ..+-++.+..|+.+|
T Consensus 25 l~awdaade~ll~~~~~~~------~~~-~~~i~nd~fGal~~~l~~~~~--~~~~d--s~~~~~~~~~n~~~n 87 (378)
T PRK15001 25 LQAWEAADEYLLQQLDDTE------IRG-PVLILNDAFGALSCALAEHKP--YSIGD--SYISELATRENLRLN 87 (378)
T ss_pred ccccccHHHHHHHHHhhcc------cCC-CEEEEcCchhHHHHHHHhCCC--Ceeeh--HHHHHHHHHHHHHHc
Confidence 7799999 55666665431 222 789999999988877775444 23344 334444455565555
No 271
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=39.43 E-value=19 Score=36.76 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=24.9
Q ss_pred CCCEEEEEcccCCHHHHHHHH---------c---C----CCEEEEEcCChH
Q 018716 117 RGKRVLELSCGYGLPGIFACL---------K---G----AGTVHFQDLSAE 151 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~---------~---G----a~~V~~TD~s~~ 151 (351)
+..+|+|+|||+|..++.+.. + + .-+|++.|....
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~N 113 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSN 113 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCC
Confidence 356899999999988876531 1 1 137889998643
No 272
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=38.45 E-value=56 Score=29.25 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=34.0
Q ss_pred ccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEccc-C-CHHHH-HHHHcCCCEEEEEcCCh
Q 018716 93 KCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCG-Y-GLPGI-FACLKGAGTVHFQDLSA 150 (351)
Q Consensus 93 k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcG-t-GL~gl-~aa~~Ga~~V~~TD~s~ 150 (351)
.++.+++.+++.+. ..+.+++||=+|+| + |.+-. .+...|+ +|++++-+.
T Consensus 26 ~~~~a~v~l~~~~~-------~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~ 78 (168)
T cd01080 26 CTPAGILELLKRYG-------IDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT 78 (168)
T ss_pred ChHHHHHHHHHHcC-------CCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc
Confidence 47777777666653 34799999999999 2 55332 3334666 688888653
No 273
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=36.55 E-value=61 Score=31.40 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=26.3
Q ss_pred CCCCEEEEEcccCCHHHHHH---HH-cCCCEEEEEcCChHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFA---CL-KGAGTVHFQDLSAETIR 154 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~a---a~-~Ga~~V~~TD~s~~vL~ 154 (351)
.++.+||=.||| -+|+++ ++ .|+++|+++|.+++-++
T Consensus 168 ~~g~~VlV~G~G--~vG~~aiqlak~~G~~~Vi~~~~~~~~~~ 208 (343)
T PRK09880 168 LQGKRVFVSGVG--PIGCLIVAAVKTLGAAEIVCADVSPRSLS 208 (343)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHcCCcEEEEEeCCHHHHH
Confidence 468899988875 455443 33 57778999999886543
No 274
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=36.27 E-value=16 Score=37.91 Aligned_cols=49 Identities=29% Similarity=0.278 Sum_probs=41.0
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 166 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~ 166 (351)
-.|..|-|+=||.|-..+-|++.| ..|++-|.|+++++.+ ..|+.+|..
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~L-k~ni~lNkv 296 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWL-KANIKLNKV 296 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHH-HHhcccccc
Confidence 467788899999999999999888 5999999999999764 567777643
No 275
>PRK11524 putative methyltransferase; Provisional
Probab=35.54 E-value=1.3e+02 Score=28.92 Aligned_cols=51 Identities=22% Similarity=0.141 Sum_probs=41.3
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
+.|.+.|... ...+|..|||-=||+|-.+++|.+.|- +.++.|++++-.+.
T Consensus 195 ~~L~erlI~~-----~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~ 245 (284)
T PRK11524 195 EALLKRIILA-----SSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKM 245 (284)
T ss_pred HHHHHHHHHH-----hCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHH
Confidence 4566666554 347899999999999999999998875 89999999987653
No 276
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.09 E-value=42 Score=30.35 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=32.2
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 154 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~ 154 (351)
+..+.+|||+|-|-+-++++++|...-++.+.|+-.+.
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVa 109 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVA 109 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHH
Confidence 33478999999999999999999777889999997653
No 277
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=34.79 E-value=1.4e+02 Score=23.14 Aligned_cols=49 Identities=29% Similarity=0.250 Sum_probs=30.1
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH--HcCCCEEEEEcC
Q 018716 100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC--LKGAGTVHFQDL 148 (351)
Q Consensus 100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa--~~Ga~~V~~TD~ 148 (351)
...++|.+..+.....+++++++-+|+|.---+++.+ ..+..++++.|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 5 GAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3455555554333455889999999997433333322 244568888887
No 278
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=34.33 E-value=64 Score=31.35 Aligned_cols=39 Identities=8% Similarity=-0.083 Sum_probs=26.6
Q ss_pred CCCCEEEEEcccC-CHHHHHHHH--cCCCEEEEEcCChHHHH
Q 018716 116 FRGKRVLELSCGY-GLPGIFACL--KGAGTVHFQDLSAETIR 154 (351)
Q Consensus 116 ~~~krVLELGcGt-GL~gl~aa~--~Ga~~V~~TD~s~~vL~ 154 (351)
.+|.+||=+|||. |+..+.+++ .|+.+|+++|.+++-++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~ 203 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLD 203 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHH
Confidence 4688999999863 444444343 46668999999876443
No 279
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=33.79 E-value=42 Score=30.66 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcccC-CH-HHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 115 SFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 115 ~~~~krVLELGcGt-GL-~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
.+++++|+=+|||. |. +...+++.|..++++.|.+.- ...|+.++.
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v-----e~sNL~Rq~ 65 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV-----DLSNLQRQI 65 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE-----cccchhhhh
Confidence 46889999999993 22 223345678889999998752 236776654
No 280
>PRK08328 hypothetical protein; Provisional
Probab=32.80 E-value=41 Score=31.42 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=32.1
Q ss_pred CCCCCEEEEEcccC-CHH-HHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 115 SFRGKRVLELSCGY-GLP-GIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 115 ~~~~krVLELGcGt-GL~-gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
.+++++|+=+|||. |.. ...+++.|..++++.|.+.- ...|+.++.
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v-----e~sNL~Rq~ 71 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP-----ELSNLNRQI 71 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc-----Chhhhcccc
Confidence 46789999999993 322 23345689999999998762 236766654
No 281
>PRK13699 putative methylase; Provisional
Probab=32.68 E-value=1.6e+02 Score=27.49 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=39.4
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716 99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 154 (351)
Q Consensus 99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~ 154 (351)
..|.+.+... ...+|..|||-=||+|-.++++...|. ++++.|++++-.+
T Consensus 150 ~~l~~~~i~~-----~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~ 199 (227)
T PRK13699 150 VTSLQPLIES-----FTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHR 199 (227)
T ss_pred HHHHHHHHHH-----hCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHH
Confidence 4555555543 235788999999999999999998875 7999999998764
No 282
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=32.67 E-value=1.2e+02 Score=29.04 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=28.8
Q ss_pred CCEEEEEcccCCHH-HHHHHHcC--CCEEEEEcCChHHHHhhhHHHHH
Q 018716 118 GKRVLELSCGYGLP-GIFACLKG--AGTVHFQDLSAETIRCTTVPNVL 162 (351)
Q Consensus 118 ~krVLELGcGtGL~-gl~aa~~G--a~~V~~TD~s~~vL~~~t~~Nv~ 162 (351)
.-++.|==||.|-+ ++...+.+ -..|+++|+++++|++ ...|+.
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~l-A~kNL~ 98 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALEL-ARKNLS 98 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHH-HHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHH-HHHhhh
Confidence 44888999999854 55555443 3589999999999975 344543
No 283
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=32.34 E-value=43 Score=31.61 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCCCCEEEEEcccC-CH-HHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 115 SFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 115 ~~~~krVLELGcGt-GL-~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
.+++++|+=+|||. |. +...+++.|..++++.|.+.- ...|+.++.
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V-----~~sNlnRq~ 55 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV-----CVSNLNRQI 55 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE-----Cchhhcchh
Confidence 36788999999993 32 223455689899999998862 346776554
No 284
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.07 E-value=1.4e+02 Score=29.56 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=32.5
Q ss_pred CCCCCCCEEEEEcccCCHHHHHH---HHcCCCEEEEEcCChHHHHh
Q 018716 113 QLSFRGKRVLELSCGYGLPGIFA---CLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 113 ~~~~~~krVLELGcGtGL~gl~a---a~~Ga~~V~~TD~s~~vL~~ 155 (351)
+.++.|+.||==|+|.|+-=..+ |+.|+ ++.+.|+|.+-...
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~e 77 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEE 77 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHH
Confidence 45689999999999999754433 45676 89999999976543
No 285
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=32.05 E-value=84 Score=29.50 Aligned_cols=38 Identities=34% Similarity=0.491 Sum_probs=25.1
Q ss_pred CCCCEEEEEcccC-CHHHHHHHH-cCCCEEEEEcCChHHH
Q 018716 116 FRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETI 153 (351)
Q Consensus 116 ~~~krVLELGcGt-GL~gl~aa~-~Ga~~V~~TD~s~~vL 153 (351)
.++.+||=+|+|. |+..+.+++ .|+.+|+.+|.+++-+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~ 158 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRR 158 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 4788999998762 333333333 5776699998887543
No 286
>PRK08223 hypothetical protein; Validated
Probab=31.75 E-value=30 Score=33.90 Aligned_cols=49 Identities=20% Similarity=0.136 Sum_probs=35.2
Q ss_pred CCCCCCCEEEEEcccC-CHH-HHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716 113 QLSFRGKRVLELSCGY-GLP-GIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 166 (351)
Q Consensus 113 ~~~~~~krVLELGcGt-GL~-gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~ 166 (351)
+..+++.+||=+|||. |.. ...+++.|..++++.|.+.- ...|+.++..
T Consensus 22 Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V-----e~SNLnRQ~l 72 (287)
T PRK08223 22 QQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF-----ELRNFNRQAG 72 (287)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc-----chhccccccC
Confidence 3457899999999993 433 34566789999999999862 2367766643
No 287
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=30.91 E-value=1.2e+02 Score=28.31 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=37.3
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH--HcCCC--EEEEEcCCh
Q 018716 97 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC--LKGAG--TVHFQDLSA 150 (351)
Q Consensus 97 as~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa--~~Ga~--~V~~TD~s~ 150 (351)
+++.++-++..... ....+++++||=+|+|..-.+++.. ..|.+ ++++.|.+.
T Consensus 5 ~~v~lAG~~~al~~-~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 5 AIVTLAGLLNALKL-VGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred HHHHHHHHHHHHHH-hCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 45666666654321 2345889999999999876666543 46777 899999984
No 288
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=30.68 E-value=1e+02 Score=31.40 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=38.6
Q ss_pred ccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716 93 KCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 154 (351)
Q Consensus 93 k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~ 154 (351)
.+||-..+.-+.|. .-++.+||-|.+|. ...+..+..++++|++.|+|+.=+.
T Consensus 19 ~~WEDp~vD~~aL~--------i~~~d~vl~ItSaG-~N~L~yL~~~P~~I~aVDlNp~Q~a 71 (380)
T PF11899_consen 19 QCWEDPRVDMEALN--------IGPDDRVLTITSAG-CNALDYLLAGPKRIHAVDLNPAQNA 71 (380)
T ss_pred cccCCcHHHHHHhC--------CCCCCeEEEEccCC-chHHHHHhcCCceEEEEeCCHHHHH
Confidence 48999977777774 24788999997763 3334445567889999999996443
No 289
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=30.38 E-value=1.5e+02 Score=29.40 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=30.4
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHH
Q 018716 115 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAET 152 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~v 152 (351)
..+|.+|||=|.|+|.++.++++. + -.+++-.|+.+.-
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~R 142 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETR 142 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHH
Confidence 468999999999999999988863 1 2478888997743
No 290
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=30.04 E-value=58 Score=27.31 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=23.6
Q ss_pred CCEEEEEcccC-CH-HHHHHHHcCCCEEEEEcCCh
Q 018716 118 GKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSA 150 (351)
Q Consensus 118 ~krVLELGcGt-GL-~gl~aa~~Ga~~V~~TD~s~ 150 (351)
+++|+=+|||. |. +...+++.|..++++.|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 57899999983 32 22334567999999999875
No 291
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.03 E-value=1.4e+02 Score=28.63 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=36.1
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHh
Q 018716 100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC 155 (351)
Q Consensus 100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~ 155 (351)
+-++++...++ .+..|++||||.=||.-.+..|+. --.+|+..|++++..+.
T Consensus 60 d~g~fl~~li~----~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~ 113 (237)
T KOG1663|consen 60 DKGQFLQMLIR----LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEI 113 (237)
T ss_pred HHHHHHHHHHH----HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHH
Confidence 44455544432 268899999998888777766541 22489999999987653
No 292
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=29.95 E-value=78 Score=30.28 Aligned_cols=38 Identities=11% Similarity=-0.060 Sum_probs=25.0
Q ss_pred CCCCEEEEEcccC-CHHHHHHHH-cCCCEEEEEcCChHHH
Q 018716 116 FRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETI 153 (351)
Q Consensus 116 ~~~krVLELGcGt-GL~gl~aa~-~Ga~~V~~TD~s~~vL 153 (351)
.++++||=+|||. |+..+.+++ .|+..|.++|.+++-+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl 182 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRR 182 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 3577899888762 444443343 5887788888877554
No 293
>PLN02740 Alcohol dehydrogenase-like
Probab=29.94 E-value=85 Score=31.01 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=26.3
Q ss_pred CCCCEEEEEcccCCHHHHHH---HH-cCCCEEEEEcCChHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFA---CL-KGAGTVHFQDLSAETIR 154 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~a---a~-~Ga~~V~~TD~s~~vL~ 154 (351)
.+|.+||=+||| .+|+++ ++ .|+.+|+++|.+++-++
T Consensus 197 ~~g~~VlV~G~G--~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~ 237 (381)
T PLN02740 197 QAGSSVAIFGLG--AVGLAVAEGARARGASKIIGVDINPEKFE 237 (381)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHCCCCcEEEEcCChHHHH
Confidence 468899999875 555443 33 57767999999886553
No 294
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=29.67 E-value=37 Score=32.84 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcccC-CH-HHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 115 SFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 115 ~~~~krVLELGcGt-GL-~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
.+++.+|+=+|||. |. +...+++.|..++++.|.+.-. ..|+.++.
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~-----~sNlnRQ~ 74 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC-----VTNTNRQI 74 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec-----cccccccc
Confidence 46889999999992 22 2334556788899999988632 36655443
No 295
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=29.67 E-value=93 Score=31.58 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=30.3
Q ss_pred CCCCEEEEEcccC-CHHHHHHHH-cCCCEEEEEcCChHHH
Q 018716 116 FRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETI 153 (351)
Q Consensus 116 ~~~krVLELGcGt-GL~gl~aa~-~Ga~~V~~TD~s~~vL 153 (351)
-+|.+|.=+|||. |+..|..|+ .|+.++++.|++++-+
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl 223 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKL 223 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHH
Confidence 4688889999984 777776554 6899999999999755
No 296
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=29.63 E-value=4.1e+02 Score=23.74 Aligned_cols=41 Identities=32% Similarity=0.555 Sum_probs=28.9
Q ss_pred CCCccEEEEecccc-CccCHHHHHHHHHHHcCCCCeEEEEEecc
Q 018716 268 EGGYDVILLTEIPY-SVTSLKKLYLLIKKCLRPPYGVVYLATKK 310 (351)
Q Consensus 268 ~~~~DlILasDviY-~~~~~~~L~~~l~~~L~~p~gv~ylA~K~ 310 (351)
.++||+||+ |=.| .++...+..++++.+++ +++.+++++..
T Consensus 84 ~~~~d~vv~-DPPFl~~ec~~k~a~ti~~L~k-~~~kii~~Tg~ 125 (162)
T PF10237_consen 84 KGKFDVVVI-DPPFLSEECLTKTAETIRLLLK-PGGKIILCTGE 125 (162)
T ss_pred CCCceEEEE-CCCCCCHHHHHHHHHHHHHHhC-ccceEEEecHH
Confidence 457887775 4444 34556788899998776 77888887744
No 297
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.37 E-value=90 Score=29.43 Aligned_cols=68 Identities=19% Similarity=0.071 Sum_probs=43.6
Q ss_pred cccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--cCCCEEEEEcCChHHHHhhhHHHHH
Q 018716 92 LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVL 162 (351)
Q Consensus 92 ~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~--~Ga~~V~~TD~s~~vL~~~t~~Nv~ 162 (351)
..+|+--..+++.=.+.++.....+.+++||=+|+= +.|.+.+. ..+.+|+..|++|.|- -+..+||+
T Consensus 19 ~~v~Dvv~eI~~~K~~ai~~~~~~~E~~~vli~G~Y--ltG~~~a~~Ls~~~~vtv~Di~p~~r-~~lp~~v~ 88 (254)
T COG4017 19 TRVVDVVNEIAKKKYQAIRDFLEGEEFKEVLIFGVY--LTGNYTAQMLSKADKVTVVDIHPFMR-GFLPNNVK 88 (254)
T ss_pred CcHHHHHHHHHHHHHHHhhhhhcccCcceEEEEEee--ehhHHHHHHhcccceEEEecCCHHHH-hcCCCCcc
Confidence 346776655555555555433345788999999986 55555542 2367999999999664 33445544
No 298
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=28.77 E-value=59 Score=35.57 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=28.3
Q ss_pred CCCCCEEEEEcccC-CH-HHHHHHHcCCCEEEEEcCCh
Q 018716 115 SFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSA 150 (351)
Q Consensus 115 ~~~~krVLELGcGt-GL-~gl~aa~~Ga~~V~~TD~s~ 150 (351)
.+++.+||=+|||+ |. +...++..|..++++.|.+.
T Consensus 335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 335 RYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred HHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 35788999999996 54 34456678999999999865
No 299
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=28.28 E-value=67 Score=29.43 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=27.3
Q ss_pred CCCCCCEEEEEcccC-CH-HHHHHHHcCCCEEEEEcCCh
Q 018716 114 LSFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSA 150 (351)
Q Consensus 114 ~~~~~krVLELGcGt-GL-~gl~aa~~Ga~~V~~TD~s~ 150 (351)
..++.++|+=+|||. |. +...+++.|..++++.|.+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 346889999999994 22 22345567888999999984
No 300
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=27.86 E-value=1.1e+02 Score=30.17 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=26.5
Q ss_pred CCCCEEEEEcccC-CHHHHHHHH-cCCCEEEEEcCChHHHH
Q 018716 116 FRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETIR 154 (351)
Q Consensus 116 ~~~krVLELGcGt-GL~gl~aa~-~Ga~~V~~TD~s~~vL~ 154 (351)
..+.+||=.|||. |+..+.+|+ .|+.+|+.+|.+++-++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~ 224 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFE 224 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence 4688999998752 333333343 57768999999887553
No 301
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=27.85 E-value=1.3e+02 Score=28.32 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=29.8
Q ss_pred EEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716 120 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 154 (351)
Q Consensus 120 rVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~ 154 (351)
+|+||=||.|..++.+-..|...|.+.|+++...+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~ 36 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACE 36 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHH
Confidence 78999999999988888888878999999998763
No 302
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=27.19 E-value=80 Score=30.59 Aligned_cols=61 Identities=15% Similarity=0.270 Sum_probs=35.6
Q ss_pred HHHHHHhhhhhcCCCCC--CCCEEEEEcccCCHHHHHHHH----cCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 100 DLVNVLKHEIRDGQLSF--RGKRVLELSCGYGLPGIFACL----KGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 100 ~L~~~L~~~~~~~~~~~--~~krVLELGcGtGL~gl~aa~----~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
+..+||++.+....... ++-++||+|-| -..|+-.. .|. +.++||+++..++. ..-||..|
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvG--AnCIYPliG~~eYgw-rfvGseid~~sl~s-A~~ii~~N 125 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVG--ANCIYPLIGVHEYGW-RFVGSEIDSQSLSS-AKAIISAN 125 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccC--cccccccccceeecc-eeecCccCHHHHHH-HHHHHHcC
Confidence 55555555443222333 44467777666 33444332 344 78999999998865 35666666
No 303
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.02 E-value=1.1e+02 Score=30.88 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCCCEEEEEcccC-CHHHHHHH-HcCCCEEEEEcCChHHHH
Q 018716 116 FRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIR 154 (351)
Q Consensus 116 ~~~krVLELGcGt-GL~gl~aa-~~Ga~~V~~TD~s~~vL~ 154 (351)
-+|.+|--+|.|. ||.-+.-+ ..||+++++.|+|++=++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~ 231 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFE 231 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHH
Confidence 4677888888773 33333323 368999999999998654
No 304
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=25.82 E-value=3.3e+02 Score=24.78 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=29.8
Q ss_pred CCCCCCCEEEEEcccCCHHHHHHH----HcCCCEEEEEcCChHHHH
Q 018716 113 QLSFRGKRVLELSCGYGLPGIFAC----LKGAGTVHFQDLSAETIR 154 (351)
Q Consensus 113 ~~~~~~krVLELGcGtGL~gl~aa----~~Ga~~V~~TD~s~~vL~ 154 (351)
...++||+|+=+|.| -+|..++ ..|+ +|+++|.+++.++
T Consensus 23 ~~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~ 65 (200)
T cd01075 23 TDSLEGKTVAVQGLG--KVGYKLAEHLLEEGA-KLIVADINEEAVA 65 (200)
T ss_pred CCCCCCCEEEEECCC--HHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence 356899999999998 4666554 3676 8999999986553
No 305
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=25.40 E-value=79 Score=29.84 Aligned_cols=47 Identities=21% Similarity=0.431 Sum_probs=32.4
Q ss_pred CCCCCEEEEEcccC-CHH-HHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716 115 SFRGKRVLELSCGY-GLP-GIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 166 (351)
Q Consensus 115 ~~~~krVLELGcGt-GL~-gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~ 166 (351)
.+++++|+=+|||. |.. ...+++.|..++++.|.+. + ...|+.++..
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~--v---e~sNL~Rq~l 77 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT--V---SLSNLQRQVL 77 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE--E---Ccchhhhhhc
Confidence 46889999999972 322 2234567888999999885 2 3477766543
No 306
>PRK06949 short chain dehydrogenase; Provisional
Probab=25.33 E-value=3.5e+02 Score=24.34 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=26.5
Q ss_pred CCCCCCEEEEEcccCCHHHHHHH----HcCCCEEEEEcCChHHH
Q 018716 114 LSFRGKRVLELSCGYGLPGIFAC----LKGAGTVHFQDLSAETI 153 (351)
Q Consensus 114 ~~~~~krVLELGcGtGL~gl~aa----~~Ga~~V~~TD~s~~vL 153 (351)
..+.+++||=.|++.| +|..++ ..|+ +|++++.+++-+
T Consensus 5 ~~~~~k~ilItGasg~-IG~~~a~~l~~~G~-~Vi~~~r~~~~~ 46 (258)
T PRK06949 5 INLEGKVALVTGASSG-LGARFAQVLAQAGA-KVVLASRRVERL 46 (258)
T ss_pred cCCCCCEEEEECCCcH-HHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 3478899999996554 454433 3576 799999887654
No 307
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=25.09 E-value=1.6e+02 Score=24.84 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=27.9
Q ss_pred CCCCCEEEEEcccCCHHHHH--HHHcCCCEEEEEcCChHHH
Q 018716 115 SFRGKRVLELSCGYGLPGIF--ACLKGAGTVHFQDLSAETI 153 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~--aa~~Ga~~V~~TD~s~~vL 153 (351)
.+++++||=+|+|.---++. ++..|+++|+++.-+.+-.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra 49 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERA 49 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 57999999999984222222 2246888999999887544
No 308
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=24.52 E-value=6.7e+02 Score=24.47 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=22.9
Q ss_pred CCEEEEEccc-CCHHHHHHHHc-C-CCEEEEEcCChHHHHh
Q 018716 118 GKRVLELSCG-YGLPGIFACLK-G-AGTVHFQDLSAETIRC 155 (351)
Q Consensus 118 ~krVLELGcG-tGL~gl~aa~~-G-a~~V~~TD~s~~vL~~ 155 (351)
.++|+=|||| .-+.+|.++.. + ...|+..|++++..+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~ 161 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANEL 161 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHH
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence 4699999999 47778877742 3 2378999999988643
No 309
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=24.21 E-value=1.4e+02 Score=30.08 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=28.7
Q ss_pred CCCCCEEEEEcccCCHH--HHHHHH-cCCCEEEEEcCChHHHH
Q 018716 115 SFRGKRVLELSCGYGLP--GIFACL-KGAGTVHFQDLSAETIR 154 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~--gl~aa~-~Ga~~V~~TD~s~~vL~ 154 (351)
.-+|++|+=.|+| |+- ++..|+ .|+ +|++.|.+++-++
T Consensus 164 ~~pG~~V~I~G~G-GlGh~avQ~Aka~ga-~Via~~~~~~K~e 204 (339)
T COG1064 164 VKPGKWVAVVGAG-GLGHMAVQYAKAMGA-EVIAITRSEEKLE 204 (339)
T ss_pred CCCCCEEEEECCc-HHHHHHHHHHHHcCC-eEEEEeCChHHHH
Confidence 3579999999999 554 444555 685 9999999997653
No 310
>PRK09242 tropinone reductase; Provisional
Probab=23.70 E-value=3.4e+02 Score=24.57 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=28.1
Q ss_pred CCCCCCCEEEEEcccCCHHHHHH---HHcCCCEEEEEcCChHHH
Q 018716 113 QLSFRGKRVLELSCGYGLPGIFA---CLKGAGTVHFQDLSAETI 153 (351)
Q Consensus 113 ~~~~~~krVLELGcGtGL~gl~a---a~~Ga~~V~~TD~s~~vL 153 (351)
...+++|++|=.|++.|+-.-.+ +..|+ +|++++.+++-+
T Consensus 4 ~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~ 46 (257)
T PRK09242 4 RWRLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADAL 46 (257)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHH
Confidence 34578999999999776544333 23576 799999887654
No 311
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=23.54 E-value=4e+02 Score=23.69 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=24.2
Q ss_pred CCCCEEEEEcccCCHHHHHHH----HcCCCEEEEEcCChHH
Q 018716 116 FRGKRVLELSCGYGLPGIFAC----LKGAGTVHFQDLSAET 152 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa----~~Ga~~V~~TD~s~~v 152 (351)
..+++||=.|++ |.+|..++ ..|+ +|++++-++.-
T Consensus 4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~-~V~~~~r~~~~ 42 (251)
T PRK12826 4 LEGRVALVTGAA-RGIGRAIAVRLAADGA-EVIVVDICGDD 42 (251)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHH
Confidence 467899988875 44555443 3566 79999988653
No 312
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=23.49 E-value=1.4e+02 Score=28.97 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=25.4
Q ss_pred CCCCEEEEEcccCCHHHHHH---HH-cCCCEEEEEcCChHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFA---CL-KGAGTVHFQDLSAETI 153 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~a---a~-~Ga~~V~~TD~s~~vL 153 (351)
.++.+||=.||| .+|+++ ++ .|+.+|+++|.+++-+
T Consensus 175 ~~g~~VlV~G~g--~vG~~a~~~ak~~G~~~Vi~~~~~~~~~ 214 (358)
T TIGR03451 175 KRGDSVAVIGCG--GVGDAAIAGAALAGASKIIAVDIDDRKL 214 (358)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence 468899999874 455443 33 5776799999887644
No 313
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=23.43 E-value=1.3e+02 Score=27.68 Aligned_cols=51 Identities=18% Similarity=0.100 Sum_probs=33.5
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716 100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~ 155 (351)
.|+++|...+.. ....+++|.=||+|.+++.+... ..+|++-|+++.+...
T Consensus 7 ~l~~~I~~~ip~----~~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~ 57 (260)
T PF02086_consen 7 KLAKWIIELIPK----NKHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINF 57 (260)
T ss_dssp GGHHHHHHHS-S-----S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHH
T ss_pred HHHHHHHHHcCC----CCCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHH
Confidence 466677766421 16789999999999998887654 4589999999987643
No 314
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=22.64 E-value=90 Score=31.85 Aligned_cols=50 Identities=26% Similarity=0.490 Sum_probs=36.5
Q ss_pred CCCCCCCCEEEEEcccC-CHHHH-HHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716 112 GQLSFRGKRVLELSCGY-GLPGI-FACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 166 (351)
Q Consensus 112 ~~~~~~~krVLELGcGt-GL~gl-~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~ 166 (351)
++...++..||-+|||. |.|.+ +++.+|..++=+.|++. ++ +.|+.+-..
T Consensus 60 GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~Dv--Ve---~sNlhRQVl 111 (427)
T KOG2017|consen 60 GQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDV--VE---LSNLHRQVL 111 (427)
T ss_pred cccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccce--ee---hhhHHHHHh
Confidence 34567888999999995 77765 45667888999999985 32 366665544
No 315
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=22.41 E-value=88 Score=32.19 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=34.1
Q ss_pred CCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccC-CHHHHHHHH-cCCCEEEEEcCChH
Q 018716 86 SKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAE 151 (351)
Q Consensus 86 g~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGt-GL~gl~aa~-~Ga~~V~~TD~s~~ 151 (351)
..|-+|..+|++- .+. ....+.|++|+=+|+|. |..-...++ .|+ +|+++|.++.
T Consensus 173 n~yg~g~s~~~~i-------~r~---t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~ 229 (406)
T TIGR00936 173 NRYGTGQSTIDGI-------LRA---TNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPI 229 (406)
T ss_pred cccccchhHHHHH-------HHh---cCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChh
Confidence 4466666566542 221 12347899999999994 333333332 566 7999998874
No 316
>PRK06153 hypothetical protein; Provisional
Probab=22.09 E-value=91 Score=32.04 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=28.3
Q ss_pred CCCCCEEEEEcccC-CH-HHHHHHHcCCCEEEEEcCCh
Q 018716 115 SFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSA 150 (351)
Q Consensus 115 ~~~~krVLELGcGt-GL-~gl~aa~~Ga~~V~~TD~s~ 150 (351)
.+++++|+=+|||. |. +...+++.|..++++.|.+.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 36889999999993 44 34456678999999999886
No 317
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=22.02 E-value=1.5e+02 Score=29.04 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=25.3
Q ss_pred CCCCEEEEEcccCCHHHHHH---HH-cCCCEEEEEcCChHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFA---CL-KGAGTVHFQDLSAETI 153 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~a---a~-~Ga~~V~~TD~s~~vL 153 (351)
.++.+||=+|+| .+|+++ ++ .|+++|+.+|.+++-+
T Consensus 190 ~~g~~VlV~G~G--~vG~~a~~lak~~G~~~Vi~~~~~~~r~ 229 (371)
T cd08281 190 RPGQSVAVVGLG--GVGLSALLGAVAAGASQVVAVDLNEDKL 229 (371)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHcCCCcEEEEcCCHHHH
Confidence 467888889875 455443 33 5776799999888654
No 318
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=21.55 E-value=2.1e+02 Score=29.63 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=29.3
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHH
Q 018716 117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 153 (351)
Q Consensus 117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL 153 (351)
.-+.|+|+|+|-|-.+-+++..-.-.|.+.|.|....
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~ 189 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLV 189 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHH
Confidence 3468999999999999888764334899999996543
No 319
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=21.34 E-value=1.7e+02 Score=28.48 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=29.1
Q ss_pred CCCCCCEEEEEcccCCHHHHHHH--HcCCCEEEEEcCChH
Q 018716 114 LSFRGKRVLELSCGYGLPGIFAC--LKGAGTVHFQDLSAE 151 (351)
Q Consensus 114 ~~~~~krVLELGcGtGL~gl~aa--~~Ga~~V~~TD~s~~ 151 (351)
...++++||=||||..--+++++ ..|++++++.+-+++
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 34688999999999765555543 368889999998853
No 320
>PRK06172 short chain dehydrogenase; Provisional
Probab=21.11 E-value=4.3e+02 Score=23.78 Aligned_cols=37 Identities=30% Similarity=0.255 Sum_probs=26.4
Q ss_pred CCCCEEEEEcccCCHHHHHH---HHcCCCEEEEEcCChHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFA---CLKGAGTVHFQDLSAETI 153 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~a---a~~Ga~~V~~TD~s~~vL 153 (351)
+++++||=.|++.|+-.-.+ +..|+ +|++++.+++-+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~ 44 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGG 44 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHH
Confidence 67899999998766544332 23565 799999887644
No 321
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.81 E-value=1.7e+02 Score=28.67 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=28.3
Q ss_pred EEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716 121 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 154 (351)
Q Consensus 121 VLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~ 154 (351)
|+||=||.|..++-+-..|..-+.+.|+++...+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ 34 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQK 34 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHH
Confidence 6899999998888777778767788999997763
No 322
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=20.75 E-value=1.1e+02 Score=28.81 Aligned_cols=46 Identities=20% Similarity=0.414 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcccC-CHH-HHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716 115 SFRGKRVLELSCGY-GLP-GIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 165 (351)
Q Consensus 115 ~~~~krVLELGcGt-GL~-gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~ 165 (351)
..++++|+=+|||. |.. ...+++.|..++++.|.+.- ...|+.++.
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v-----e~sNL~RQ~ 68 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV-----SLSNLQRQV 68 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc-----cccCcccce
Confidence 35778999999993 332 23445679899999998762 236666553
No 323
>PLN02827 Alcohol dehydrogenase-like
Probab=20.65 E-value=1.7e+02 Score=28.90 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=25.4
Q ss_pred CCCCEEEEEcccCCHHHHHH---HH-cCCCEEEEEcCChHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFA---CL-KGAGTVHFQDLSAETI 153 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~a---a~-~Ga~~V~~TD~s~~vL 153 (351)
.+|.+||=.|+| .+|+++ ++ .|+..|+.+|.+++-+
T Consensus 192 ~~g~~VlV~G~G--~vG~~~iqlak~~G~~~vi~~~~~~~~~ 231 (378)
T PLN02827 192 SKGSSVVIFGLG--TVGLSVAQGAKLRGASQIIGVDINPEKA 231 (378)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHcCCCeEEEECCCHHHH
Confidence 568899999875 455543 32 5776799999887644
No 324
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=20.64 E-value=99 Score=26.06 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=26.7
Q ss_pred EEEEEcccC-CH-HHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716 120 RVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 166 (351)
Q Consensus 120 rVLELGcGt-GL-~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~ 166 (351)
+|+=+|||. |. +...+++.|..++++.|.+.- ...|+.++..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v-----~~~nl~r~~~ 44 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV-----ELSNLNRQFL 44 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc-----Ccchhhcccc
Confidence 477788872 22 122344678889999998852 3467766643
No 325
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=20.64 E-value=3.3e+02 Score=26.98 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=33.1
Q ss_pred CCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716 116 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 155 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~ 155 (351)
-+|..++|--+|.|--+.+++. .+..+|++.|.++.+++.
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ 59 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAF 59 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHH
Confidence 3677999999999999988875 334689999999999854
No 326
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=20.58 E-value=5e+02 Score=23.41 Aligned_cols=39 Identities=28% Similarity=0.254 Sum_probs=27.8
Q ss_pred CCCCCCEEEEEcccCCHHHHHH---HHcCCCEEEEEcCChHHH
Q 018716 114 LSFRGKRVLELSCGYGLPGIFA---CLKGAGTVHFQDLSAETI 153 (351)
Q Consensus 114 ~~~~~krVLELGcGtGL~gl~a---a~~Ga~~V~~TD~s~~vL 153 (351)
..+++++||=.|++.|+-.-.+ +..|+ +|++++-+++.+
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~ 48 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATL 48 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHH
Confidence 4578999999998766644332 23576 899999987654
No 327
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=20.58 E-value=5.3e+02 Score=23.36 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=25.9
Q ss_pred CCCCCEEEEEcccCCHHHHHHH----HcCCCEEEEEcCChHHH
Q 018716 115 SFRGKRVLELSCGYGLPGIFAC----LKGAGTVHFQDLSAETI 153 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~aa----~~Ga~~V~~TD~s~~vL 153 (351)
.+++++||=.|+. |.+|..++ ..|+ +|++++-+..-+
T Consensus 9 ~~~~k~ilItGa~-g~IG~~la~~l~~~G~-~V~~~~r~~~~~ 49 (259)
T PRK08213 9 DLSGKTALVTGGS-RGLGLQIAEALGEAGA-RVVLSARKAEEL 49 (259)
T ss_pred CcCCCEEEEECCC-chHHHHHHHHHHHcCC-EEEEEeCCHHHH
Confidence 4678999999965 45555544 3576 799998876543
No 328
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.36 E-value=38 Score=35.79 Aligned_cols=48 Identities=27% Similarity=0.259 Sum_probs=40.1
Q ss_pred CCCCEEEEEcccCCHHHHHHHH--cCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLAN 164 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~aa~--~Ga~~V~~TD~s~~vL~~~t~~Nv~lN 164 (351)
-.+.+|||-=|+||+-+|--+. -|..+|++-|.++..+.. ...|+++|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~-i~~Nv~~N 157 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTS-IQRNVELN 157 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHH-HHhhhhhc
Confidence 3566999999999999998774 467789999999999864 57888888
No 329
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=20.34 E-value=1.2e+02 Score=28.04 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=32.5
Q ss_pred CCCCCEEEEEcccC-CH-HHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716 115 SFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 166 (351)
Q Consensus 115 ~~~~krVLELGcGt-GL-~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~ 166 (351)
.+.+++|+=+|||. |. +...+++.|..++++.|.+.- ...|+.++..
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v-----e~sNL~Rq~l 66 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV-----ELSNLQRQIL 66 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE-----cCcccccccc
Confidence 46789999999993 22 223345689999999998862 3467766543
No 330
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=20.29 E-value=2e+02 Score=23.90 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=20.1
Q ss_pred EEcccCC--HHHHHHH--HcC-CCEEEEEcCChHHHHhhhHHH
Q 018716 123 ELSCGYG--LPGIFAC--LKG-AGTVHFQDLSAETIRCTTVPN 160 (351)
Q Consensus 123 ELGcGtG--L~gl~aa--~~G-a~~V~~TD~s~~vL~~~t~~N 160 (351)
|+||..| -..+..+ .++ ..+|++.+-++..++.+ ..|
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l-~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKL-KRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHH-HHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHH-hHH
Confidence 7899999 3333332 233 35899999999877553 344
No 331
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=20.29 E-value=1.9e+02 Score=27.59 Aligned_cols=36 Identities=31% Similarity=0.222 Sum_probs=25.2
Q ss_pred CCCCEEEEEcccCCHHHHHH---H-HcCCCEEEEEcCChHHH
Q 018716 116 FRGKRVLELSCGYGLPGIFA---C-LKGAGTVHFQDLSAETI 153 (351)
Q Consensus 116 ~~~krVLELGcGtGL~gl~a---a-~~Ga~~V~~TD~s~~vL 153 (351)
.++.+||=+|+| .+|+++ + ..|+++|+++|.+++-+
T Consensus 162 ~~g~~vlV~G~G--~vG~~~~~~ak~~G~~~vi~~~~~~~~~ 201 (339)
T cd08239 162 SGRDTVLVVGAG--PVGLGALMLARALGAEDVIGVDPSPERL 201 (339)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 468899999864 555544 3 36776699999887644
No 332
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=20.23 E-value=79 Score=31.47 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=27.5
Q ss_pred CCCCCCCEEEEEcccC-CH-HHHHHHHcCCCEEEEEcCCh
Q 018716 113 QLSFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSA 150 (351)
Q Consensus 113 ~~~~~~krVLELGcGt-GL-~gl~aa~~Ga~~V~~TD~s~ 150 (351)
+..+++++||=+|||. |. +...+++.|..++++.|.+.
T Consensus 19 Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 19 QRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3457889999999994 22 12234567888999999885
No 333
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=20.13 E-value=2.6e+02 Score=27.09 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=29.4
Q ss_pred CCCCCEEEEEcccCCHHHHHHH--HcCCCEEEEEcCChHHH
Q 018716 115 SFRGKRVLELSCGYGLPGIFAC--LKGAGTVHFQDLSAETI 153 (351)
Q Consensus 115 ~~~~krVLELGcGtGL~gl~aa--~~Ga~~V~~TD~s~~vL 153 (351)
..++++||=||||..--+++.+ ..|++++++.+-+.+-.
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka 164 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRA 164 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHH
Confidence 3578999999999766565544 46888999999886543
Done!