BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018717
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F26|A Chain A, Crystal Structure Of No Complex Of Thr243val Mutants Of
Cytochrome P450nor
Length = 402
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
Query: 103 TTVNTSLRSYDVLSYEAIYVVKRN-------FTSICVAQTKPG--------QLPFISAIE 147
T S + ++L Y AI V +R + +C Q KPG Q+ F+ +
Sbjct: 179 TAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVA 238
Query: 148 VRSLGINMYSQVPSNLALHLIQRAAMGANQTI 179
++ +NM + + LA H Q A + AN ++
Sbjct: 239 GNAVMVNMIALGVATLAQHPDQLAQLKANPSL 270
>pdb|1CL6|A Chain A, Crystal Structures Of Ferric-No Complexes Of Fungal Nitric
Oxide Reductase And Its Ser286 Mutants At Cryogenic
Temperature
Length = 402
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 103 TTVNTSLRSYDVLSYEAIYVVKR-------NFTSICVAQTKPG--------QLPFISAIE 147
T S + ++L Y AI V +R + +C Q KPG Q+ F+ +
Sbjct: 179 TAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVA 238
Query: 148 VRSLGINMYSQVPSNLALHLIQRAAMGANQTI 179
+ +NM + + LA H Q A + AN ++
Sbjct: 239 GNATMVNMIALGVATLAQHPDQLAQLKANPSL 270
>pdb|1CMJ|A Chain A, Crystal Structures Of Ferric-No Complexes Of Fungal Nitric
Oxide Reductase And Their Ser286 Mutants At Cryogenic
Temperature
Length = 402
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 103 TTVNTSLRSYDVLSYEAIYVVKRN-------FTSICVAQTKPG--------QLPFISAIE 147
T S + ++L Y AI V +R + +C Q KPG Q+ F+ +
Sbjct: 179 TAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVA 238
Query: 148 VRSLGINMYSQVPSNLALHLIQRAAMGANQTI 179
+ +NM + + LA H Q A + AN ++
Sbjct: 239 GNATMVNMIALGVATLAQHPDQLAQLKANPSL 270
>pdb|1CMN|A Chain A, Crystal Structures Of Ferric-No Complexes Of Fungal Nitric
Oxide Reductase And Their Ser286 Mutants At Cryogenic
Temperature
Length = 402
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 103 TTVNTSLRSYDVLSYEAIYVVKRN-------FTSICVAQTKPG--------QLPFISAIE 147
T S + ++L Y AI V +R + +C Q KPG Q+ F+ +
Sbjct: 179 TAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVA 238
Query: 148 VRSLGINMYSQVPSNLALHLIQRAAMGANQTI 179
+ +NM + + LA H Q A + AN ++
Sbjct: 239 GNATMVNMIALGVATLAQHPDQLAQLKANPSL 270
>pdb|1ULW|A Chain A, Crystal Structure Of P450nor Ser73gly/ser75gly Mutant
Length = 402
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 103 TTVNTSLRSYDVLSYEAIYVVKRN-------FTSICVAQTKPG--------QLPFISAIE 147
T S + ++L Y AI V +R + +C Q KPG Q+ F+ +
Sbjct: 179 TAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVA 238
Query: 148 VRSLGINMYSQVPSNLALHLIQRAAMGANQTI 179
+ +NM + + LA H Q A + AN ++
Sbjct: 239 GNATMVNMIALGVATLAQHPDQLAQLKANPSL 270
>pdb|1F24|A Chain A, Crystal Structure Of No Complex Of Thr243ala Mutants Of
Cytochrome P450nor
Length = 402
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 103 TTVNTSLRSYDVLSYEAIYVVKR-------NFTSICVAQTKPG--------QLPFISAIE 147
T S + ++L Y AI V +R + +C Q KPG Q+ F+ +
Sbjct: 179 TAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVA 238
Query: 148 VRSLGINMYSQVPSNLALHLIQRAAMGANQTI 179
+ +NM + + LA H Q A + AN ++
Sbjct: 239 GNAAMVNMIALGVATLAQHPDQLAQLKANPSL 270
>pdb|1EHE|A Chain A, Crystal Structures Of Cytochrome P450nor And Its Mutants
(Ser286 Val, Thr) In The Ferric Resting State At
Cryogenic Temperature: A Comparative Analysis With
Monooxygenase Cytochrome P450s
pdb|1GEI|A Chain A, Structural Characterization Of N-Butyl-Isocyanide
Complexes Of Cytochromes P450nor And P450cam
pdb|1GED|A Chain A, A Positive Charge Route For The Access Of Nadh To Heme
Formed In The Distal Heme Pocket Of Cytochrome P450nor
pdb|1GEJ|A Chain A, Structural Characterization Of N-Butyl-Isocyanide
Complexes Of Cytochromes P450nor And P450cam
pdb|1ROM|A Chain A, Crystal Structure Of Nitric Reductase From Denitrifying
Fungus Fusarium Oxysporum
pdb|2ROM|A Chain A, Crystal Structure Of Nitric Reductase From Denitrifying
Fungus Fusarium Oxysporum Complex With Carbon Monoxide
Length = 403
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 103 TTVNTSLRSYDVLSYEAIYVVKRN-------FTSICVAQTKPG--------QLPFISAIE 147
T S + ++L Y AI V +R + +C Q KPG Q+ F+ +
Sbjct: 180 TAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVA 239
Query: 148 VRSLGINMYSQVPSNLALHLIQRAAMGANQTI 179
+ +NM + + LA H Q A + AN ++
Sbjct: 240 GNATMVNMIALGVATLAQHPDQLAQLKANPSL 271
>pdb|1EHF|A Chain A, Crystal Structures Of Cytochrome P450nor And Its Mutants
(Ser286 Val, Thr) In The Ferric Resting State At
Cryogenic Temperature: A Comparative Analysis With
Monooxygenase Cytochrome P450s
Length = 403
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 103 TTVNTSLRSYDVLSYEAIYVVKRN-------FTSICVAQTKPG--------QLPFISAIE 147
T S + ++L Y AI V +R + +C Q KPG Q+ F+ +
Sbjct: 180 TAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVA 239
Query: 148 VRSLGINMYSQVPSNLALHLIQRAAMGANQTI 179
+ +NM + + LA H Q A + AN ++
Sbjct: 240 GNATMVNMIALGVATLAQHPDQLAQLKANPSL 271
>pdb|1EHG|A Chain A, Crystal Structures Of Cytochrome P450nor And Its Mutants
(Ser286 Val, Thr) In The Ferric Resting State At
Cryogenic Temperature: A Comparative Analysis With
Monooxygenase Cytochrome P450s
Length = 403
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 103 TTVNTSLRSYDVLSYEAIYVVKR-------NFTSICVAQTKPG--------QLPFISAIE 147
T S + ++L Y AI V +R + +C Q KPG Q+ F+ +
Sbjct: 180 TAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVA 239
Query: 148 VRSLGINMYSQVPSNLALHLIQRAAMGANQTI 179
+ +NM + + LA H Q A + AN ++
Sbjct: 240 GNATMVNMIALGVATLAQHPDQLAQLKANPSL 271
>pdb|1XQD|A Chain A, Crystal Structure Of P450nor Complexed With 3-
Pyridinealdehyde Adenine Dinucleotide
Length = 403
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 103 TTVNTSLRSYDVLSYEAIYVVKRN-------FTSICVAQTKPG--------QLPFISAIE 147
T S + ++L Y AI V +R + +C Q KPG Q+ F+ +
Sbjct: 180 TARQASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVA 239
Query: 148 VRSLGINMYSQVPSNLALHLIQRAAMGANQTI 179
+ +NM + + LA H Q A + AN ++
Sbjct: 240 GNATMVNMIALGVATLAQHPDQLAQLKANPSL 271
>pdb|1JFB|A Chain A, X-Ray Structure Of Nitric Oxide Reductase (Cytochrome
P450nor) In The Ferric Resting State At Atomic
Resolution
pdb|1JFC|A Chain A, X-ray Structure Of Nitric Oxide Reductase (cytochrome
P450nor) In The Ferrous Co State At Atomic Resolution
Length = 404
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 103 TTVNTSLRSYDVLSYEAIYVVKRN-------FTSICVAQTKPG--------QLPFISAIE 147
T S + ++L Y AI V +R + +C Q KPG Q+ F+ +
Sbjct: 181 TAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVA 240
Query: 148 VRSLGINMYSQVPSNLALHLIQRAAMGANQTI 179
+ +NM + + LA H Q A + AN ++
Sbjct: 241 GNATMVNMIALGVATLAQHPDQLAQLKANPSL 272
>pdb|1F25|A Chain A, Crystal Structure Of No Complex Of Thr243asn Mutants Of
Cytochrome P450nor
Length = 402
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 103 TTVNTSLRSYDVLSYEAIYVVKRN-------FTSICVAQTKPG--------QLPFISAIE 147
T S + ++L Y AI V +R + +C Q KPG Q+ F+ +
Sbjct: 179 TAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVA 238
Query: 148 VRSLGINMYSQVPSNLALHLIQRAAMGANQTI 179
+ +NM + + LA H Q A + AN ++
Sbjct: 239 GNANMVNMIALGVATLAQHPDQLAQLKANPSL 270
>pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D
Precursor From C.Elegans
Length = 152
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 37 KTVAYPSLVPYPMSTMRVFST--RKKNCYSFKVDEGERVLVRASFYYGNYDRKNSPP 91
K + +++P S +VFST ++ S + EGER +V + GN+D PP
Sbjct: 21 KLIGRNTVIPTKKS--QVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPP 75
>pdb|2J42|A Chain A, Low Quality Crystal Structure Of The Transport Component
C2- Ii Of The C2-Toxin From Clostridium Botulinum
Length = 721
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 26 GDDAYIQNGDNKTVAYPSLVPYPMS--TMRVFSTR--KKNCYSFK-VDEGERVLVRASFY 80
G ++ I + N YP + PM+ TM FS+R N K +D G V++ S +
Sbjct: 397 GQESLIGDYLNPGGTYPIIGEPPMALNTMDQFSSRLIPINYNQLKSIDNGGTVMLSTSQF 456
Query: 81 YGNYDRKNSPPVFDLQFDGNFW 102
GN+ + NS +L DGN W
Sbjct: 457 TGNFAKYNSNG--NLVTDGNNW 476
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,754,380
Number of Sequences: 62578
Number of extensions: 376032
Number of successful extensions: 746
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 19
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)