BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018718
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
Neurolysin Specificity In Neurotensin Cleavage Site
Length = 674
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 43/210 (20%)
Query: 144 IDQILKLRLEKAKLLDIEDLRSFCKGQGALEPREVNHWDINFWSERLCESKYDINE---- 199
+ Q LK E+ + + +E R+ C+ +G + WD+ ++ ++ E++Y +++
Sbjct: 283 LAQKLKPLGEQERAVILELKRAECERRGLPFDGRIRAWDMRYYMNQVEETRYCVDQNLLK 342
Query: 200 -------------------------------VWNDDVRFYRVKDS-SGSPIAYFYFDPYS 227
W++DVR Y +D+ SG + FY D Y
Sbjct: 343 EYFPVQVVTHGLLGIYQELLGLAFHHEEGASAWHEDVRLYTARDAASGEVVGKFYLDLY- 401
Query: 228 CPSEKKGSARICEVFSQSRVLTLDGATTRLPVVHMVCNQTPPVGDKPSLMTFSE--TVFH 285
P E K C Q L DG + ++ + MV N T P D PSL+ E T FH
Sbjct: 402 -PREGKYGHAAC-FGLQPGCLRQDG-SRQIAIAAMVANFTKPTADAPSLLQHDEVRTYFH 458
Query: 286 EFGHALQRMLTKQDEGLVAGSRGIEWDAVE 315
EFGH + ++ ++ + + +G+ +E D VE
Sbjct: 459 EFGHVMHQLCSQAEFAMFSGTH-VETDFVE 487
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
Length = 674
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 43/210 (20%)
Query: 144 IDQILKLRLEKAKLLDIEDLRSFCKGQGALEPREVNHWDINFWSERLCESKYDINE---- 199
+ Q LK E+ + + +E R+ C+ +G + WD+ ++ ++ E++Y +++
Sbjct: 283 LAQKLKPLGEQERAVILELKRAECERRGLPFDGRIRAWDMRYYMNQVEETRYCVDQNLLK 342
Query: 200 -------------------------------VWNDDVRFYRVKDS-SGSPIAYFYFDPYS 227
W++DVR Y +D+ SG + FY D Y
Sbjct: 343 EYFPVQVVTHGLLGIYQELLGLAFHHEEGASAWHEDVRLYTARDAASGEVVGKFYLDLY- 401
Query: 228 CPSEKKGSARICEVFSQSRVLTLDGATTRLPVVHMVCNQTPPVGDKPSLMTFSE--TVFH 285
P E K C Q L DG + ++ + MV N T P D PSL+ E T FH
Sbjct: 402 -PREGKYGHAAC-FGLQPGCLRQDG-SRQIAIAAMVANFTKPTADAPSLLQHDEVETYFH 458
Query: 286 EFGHALQRMLTKQDEGLVAGSRGIEWDAVE 315
EFGH + ++ ++ + + +G+ +E D VE
Sbjct: 459 EFGHVMHQLCSQAEFAMFSGTH-VERDFVE 487
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 111/284 (39%), Gaps = 87/284 (30%)
Query: 139 DNTSIIDQILKLRLEKAKLLD-----------------------IEDL-----------R 164
+NT+I+ Q+L LR + AKLL ++DL R
Sbjct: 252 ENTAILQQLLPLRAQVAKLLGYNTHADFVLELNTAKSTSRVAAFLDDLSQKLKPLGEAER 311
Query: 165 SF--------CKGQGALEPREVNHWDINFWSERLCESKYDINE----------------- 199
F C+ +G ++N WD++++ + E KY +++
Sbjct: 312 EFILSLKKKECEERGFEYDGKINAWDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLL 371
Query: 200 ------------------VWNDDVRFYRVKD-SSGSPIAYFYFDPYSCPSEKKGSARICE 240
VWN V Y VKD ++G + FY D Y P E K + C
Sbjct: 372 SIYQELLGLSFEQVPDAHVWNKSVSLYTVKDKATGEVLGQFYLDLY--PREGKYNHAAC- 428
Query: 241 VFSQSRVLTLDGATTRLPVVHMVCNQTPPVGDKPSLMTFSE--TVFHEFGHALQRMLTKQ 298
F L + + V +V N + PV +PSL+ E T FHEFGH + ++ +
Sbjct: 429 -FGLQPGCLLPDGSRMMSVAALVVNFSQPVAGRPSLLRHDEVRTYFHEFGHVMHQICAQT 487
Query: 299 DEGLVAGSRGIEWDAVELSTN--NSWKIGVTRTQVIPTIPEDGY 340
D +G+ +E D VE+ + +W V + + +DG+
Sbjct: 488 DFARFSGT-NVETDFVEVPSQMLENWVWDVDSLRKLSKHYKDGH 530
>pdb|2O3E|A Chain A, Crystal Structure Of Engineered Neurolysin With Thimet
Oligopeptidase Specificity For Neurotensin Cleavage Site
Length = 678
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 111/284 (39%), Gaps = 87/284 (30%)
Query: 139 DNTSIIDQILKLRLEKAKLLD-----------------------IEDL-----------R 164
+NT+I+ Q+L LR + AKLL ++DL R
Sbjct: 252 ENTAILQQLLPLRAQVAKLLGYNTHADFVLELNTAKSTSRVAAFLDDLSQKLKPLGEAER 311
Query: 165 SF--------CKGQGALEPREVNHWDINFWSERLCESKYDINE----------------- 199
F C+ +G ++N WD++++ + E KY +++
Sbjct: 312 EFILSLKKKECEERGFEYDGKINAWDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLL 371
Query: 200 ------------------VWNDDVRFYRVKD-SSGSPIAYFYFDPYSCPSEKKGSARICE 240
VWN V Y VKD ++G + FY D Y P E K + C
Sbjct: 372 SIYQELLGLSFEQVPDAHVWNKSVSLYTVKDKATGEVLGQFYLDLY--PREGKYNHAAC- 428
Query: 241 VFSQSRVLTLDGATTRLPVVHMVCNQTPPVGDKPSLMTFSE--TVFHEFGHALQRMLTKQ 298
F L + + V +V N + PV +PSL+ E T FHEFGH + ++ +
Sbjct: 429 -FGLQPGCLLPDGSRMMSVAALVVNFSQPVAGRPSLLRHDEVETYFHEFGHVMHQICAQT 487
Query: 299 DEGLVAGSRGIEWDAVELSTN--NSWKIGVTRTQVIPTIPEDGY 340
D +G+ +E D VE+ + +W V + + +DG+
Sbjct: 488 DFARFSGT-NVERDFVEVPSQMLENWVWDVDSLRKLSKHYKDGH 530
>pdb|1Y79|1 Chain 1, Crystal Structure Of The E.Coli Dipeptidyl
Carboxypeptidase Dcp In Complex With A Peptidic
Inhibitor
Length = 680
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 10/115 (8%)
Query: 194 KYDINEVWNDDVRFYRVKDSSGSPIAYFYFDPYSCPSEKKGSARICEVFSQSRVLTLDGA 253
++DI V++ DVR + + D +G +A FY D ++ S K G A + QS TL+
Sbjct: 384 RFDI-PVYHPDVRVWEIFDHNGVGLALFYGDFFARDS-KSGGAWMGNFVEQS---TLNKT 438
Query: 254 TTRLPVVHMVCNQTPPVGDKPSLMTFSE--TVFHEFGHALQRMLTKQDEGLVAGS 306
PV++ VCN P +P+L+ + + T+FHEFGH L + +Q ++G+
Sbjct: 439 H---PVIYNVCNYQKPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGT 490
>pdb|3GLB|A Chain A, Crystal Structure Of The Effector Binding Domain Of A Catm
Variant (R156h)
pdb|3GLB|B Chain B, Crystal Structure Of The Effector Binding Domain Of A Catm
Variant (R156h)
pdb|3GLB|C Chain C, Crystal Structure Of The Effector Binding Domain Of A Catm
Variant (R156h)
pdb|3GLB|D Chain D, Crystal Structure Of The Effector Binding Domain Of A Catm
Variant (R156h)
Length = 225
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 269 PVGDKPSLMTFSETVFHEFGHALQRMLTKQDE-----GLVAGSRGIEWDAVELSTNNSWK 323
PV KP+ TF +++F E G + LT+ E GLVA G V + ++
Sbjct: 108 PVSQKPNFATFIQSLFTELG-LVPSKLTEIREIQLALGLVAAGEG-----VCIVPASAMD 161
Query: 324 IGVTRTQVIPTIPEDGY 340
IGV IP + +D Y
Sbjct: 162 IGVKNLLYIPILDDDAY 178
>pdb|2F7B|A Chain A, Catm Effector Binding Domain
pdb|2F7C|A Chain A, Catm Effector Binding Domain With Its Effector
Cis,cis-muconate
Length = 233
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 269 PVGDKPSLMTFSETVFHEFGHALQRMLTKQDE-----GLVAGSRGIEWDAVELSTNNSWK 323
PV KP+ TF +++F E G + LT+ E GLVA G V + ++
Sbjct: 116 PVSQKPNFATFIQSLFTELG-LVPSKLTEIREIQLALGLVAAGEG-----VCIVPASAMD 169
Query: 324 IGVTRTQVIPTIPEDGY 340
IGV IP + +D Y
Sbjct: 170 IGVKNLLYIPILDDDAY 186
>pdb|2H98|A Chain A, Crystal Structure Of The Effector Binding Domain Of A Catm
Variant, Catm(V158m)
pdb|2H98|B Chain B, Crystal Structure Of The Effector Binding Domain Of A Catm
Variant, Catm(V158m)
Length = 313
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 269 PVGDKPSLMTFSETVFHEFGHALQRMLTKQDE-----GLVAGSRGIEWDAVELSTNNSWK 323
PV KP+ TF +++F E G + LT+ E GLVA G V + ++
Sbjct: 196 PVSQKPNFATFIQSLFTELG-LVPSKLTEIREIQLALGLVAAGEG-----VCIVPASAMD 249
Query: 324 IGVTRTQVIPTIPEDGY 340
IGV IP + +D Y
Sbjct: 250 IGVKNLLYIPILDDDAY 266
>pdb|4DV8|A Chain A, Anthrax Lethal Factor Metalloproteinase In Complex With
The Hydroxamic Acid Based Small Molecule Pt8421
Length = 526
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
Query: 184 NFWSERLCESKYDINEVWNDDVRFYRVKDSSGSPI---AYFYFDPYSCPSEKKGSARICE 240
N ++ + ES Y I W ++++ +K + + F F + P+ + E
Sbjct: 339 NRYASNIVESAYLILNEWKNNIQSDLIKKVTNYLVDGNGRFVFTDITLPNIAEQYTHQDE 398
Query: 241 VFSQSRVLTLDGATTRLPVVHMVCNQTPPVGDKPSLMTFSETVFHEFGHALQ----RMLT 296
++ Q L +R ++H P G L SE HEFGHA+ +L
Sbjct: 399 IYEQVHSKGLYVPESRSILLH-----GPSKG--VELRNDSEGFIHEFGHAVDDYAGYLLD 451
Query: 297 KQDEGLVAGSR 307
K LV S+
Sbjct: 452 KNQSDLVTNSK 462
>pdb|1YQY|A Chain A, Structure Of B. Anthrax Lethal Factor In Complex With A
Hydroxamate Inhibitor
Length = 523
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
Query: 184 NFWSERLCESKYDINEVWNDDVRFYRVKDSSGSPI---AYFYFDPYSCPSEKKGSARICE 240
N ++ + ES Y I W ++++ +K + + F F + P+ + E
Sbjct: 332 NRYASNIVESAYLILNEWKNNIQSDLIKKVTNYLVDGNGRFVFTDITLPNIAEQYTHQDE 391
Query: 241 VFSQSRVLTLDGATTRLPVVHMVCNQTPPVGDKPSLMTFSETVFHEFGHALQ----RMLT 296
++ Q L +R ++H P G L SE HEFGHA+ +L
Sbjct: 392 IYEQVHSKGLYVPESRSILLH-----GPSKG--VELRNDSEGFIHEFGHAVDDYAGYLLD 444
Query: 297 KQDEGLVAGSR 307
K LV S+
Sbjct: 445 KNQSDLVTNSK 455
>pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
pdb|1PWP|A Chain A, Crystal Structure Of The Anthrax Lethal Factor Complexed
With Small Molecule Inhibitor Nsc 12155
pdb|1PWP|B Chain B, Crystal Structure Of The Anthrax Lethal Factor Complexed
With Small Molecule Inhibitor Nsc 12155
pdb|1PWQ|A Chain A, Crystal Structure Of Anthrax Lethal Factor Complexed With
Thioacetyl-Tyr-Pro-Met-Amide, A Metal-Chelating Peptidyl
Small Molecule Inhibitor
pdb|1PWQ|B Chain B, Crystal Structure Of Anthrax Lethal Factor Complexed With
Thioacetyl-Tyr-Pro-Met-Amide, A Metal-Chelating Peptidyl
Small Molecule Inhibitor
pdb|1PWV|A Chain A, Crystal Structure Of Anthrax Lethal Factor Wild-Type
Protein Complexed With An Optimised Peptide Substrate.
pdb|1PWV|B Chain B, Crystal Structure Of Anthrax Lethal Factor Wild-Type
Protein Complexed With An Optimised Peptide Substrate.
pdb|1ZXV|A Chain A, X-Ray Crystal Structure Of The Anthrax Lethal Factor Bound
To A Small Molecule Inhibitor, Bi-Mfm3,
3-{5-[5-(4-Chloro-
Phenyl)-Furan-2-Ylmethylene]-4-Oxo-2-Thioxo-Thiazolidin-
3- Yl}-Propionic Acid.
pdb|1ZXV|B Chain B, X-Ray Crystal Structure Of The Anthrax Lethal Factor Bound
To A Small Molecule Inhibitor, Bi-Mfm3,
3-{5-[5-(4-Chloro-
Phenyl)-Furan-2-Ylmethylene]-4-Oxo-2-Thioxo-Thiazolidin-
3- Yl}-Propionic Acid
Length = 776
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
Query: 184 NFWSERLCESKYDINEVWNDDVRFYRVKDSSGSPI---AYFYFDPYSCPSEKKGSARICE 240
N ++ + ES Y I W ++++ +K + + F F + P+ + E
Sbjct: 589 NRYASNIVESAYLILNEWKNNIQSDLIKKVTNYLVDGNGRFVFTDITLPNIAEQYTHQDE 648
Query: 241 VFSQSRVLTLDGATTRLPVVHMVCNQTPPVGDKPSLMTFSETVFHEFGHALQ----RMLT 296
++ Q L +R ++H P G L SE HEFGHA+ +L
Sbjct: 649 IYEQVHSKGLYVPESRSILLH-----GPSKG--VELRNDSEGFIHEFGHAVDDYAGYLLD 701
Query: 297 KQDEGLVAGSR 307
K LV S+
Sbjct: 702 KNQSDLVTNSK 712
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 146 QILKLRLEKAKLLDIEDLRSFCKGQGALEPREVNHWDI---NFWSE---RLCESKYDINE 199
Q K R++ KLL CKG L + H D+ N E R+ + + +
Sbjct: 105 QKHKERIDHIKLLQYTS--QICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTK 162
Query: 200 VWNDDVRFYRVKDSSGSPIAYFYFDPYSCPSEK 232
V D F++VK+ SPI F++ P S K
Sbjct: 163 VLPQDKEFFKVKEPGESPI--FWYAPESLTESK 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,806,995
Number of Sequences: 62578
Number of extensions: 409071
Number of successful extensions: 879
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 19
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)