BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018719
         (351 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O15230|LAMA5_HUMAN Laminin subunit alpha-5 OS=Homo sapiens GN=LAMA5 PE=1 SV=8
          Length = 3695

 Score = 36.6 bits (83), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 278 CKPNMEGRNCY--ADEHYLPTLFHLELQIGLSHMPIG 312
           C+PN +G  C   A +HYLP L HL L++  +  P G
Sbjct: 850 CRPNTQGPTCSEPARDHYLPDLHHLRLELEEAATPEG 886


>sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus GN=Lama5 PE=1 SV=4
          Length = 3718

 Score = 35.8 bits (81), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 278 CKPNMEGRNCY--ADEHYLPTLFHLELQIGLSHMPIG 312
           C+PN +G  C   A +HYLP L H+ L++  +  P G
Sbjct: 855 CRPNTQGPTCSEPAKDHYLPDLHHMRLELEEAATPEG 891


>sp|Q91XJ0|CREST_RAT Calcium-responsive transcription coactivator OS=Rattus norvegicus
           GN=Ss18l1 PE=1 SV=1
          Length = 401

 Score = 32.7 bits (73), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 195 LSDSCIPLHNFDYVYNYLMYTNVSYVDCFEDPGPH----GNGRYSEHM 238
           +S    P  + DY Y    YT  SY   FEDP  H    GN +YS+  
Sbjct: 272 MSQQYYPDGHSDYAYQQSSYTEQSYDRSFEDPTQHYYEGGNSQYSQQQ 319


>sp|Q52562|STBB_PSESM Plasmid stability protein StbB OS=Pseudomonas syringae pv. tomato
           (strain DC3000) GN=stbB PE=3 SV=2
          Length = 139

 Score = 32.3 bits (72), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 27/44 (61%)

Query: 293 YLPTLFHLELQIGLSHMPIGLKESGIQKRIGHKIFPLSSLRVLQ 336
           YL T+   EL+ G++ MP+G ++  +++ +   + P+ + RVL 
Sbjct: 34  YLSTITVAELRAGIALMPVGKRQDSLRENLEKHLLPMFANRVLS 77


>sp|Q8BW22|CREST_MOUSE Calcium-responsive transactivator OS=Mus musculus GN=Ss18l1 PE=1
           SV=1
          Length = 402

 Score = 32.3 bits (72), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 195 LSDSCIPLHNFDYVYNYLMYTNVSYVDCFEDPGPH----GNGRYSEHM 238
           +S    P  + DY Y    YT  SY   FEDP  H    GN +YS+  
Sbjct: 273 MSQQYYPDGHGDYAYQQSSYTEQSYDRSFEDPTQHYYEGGNSQYSQQQ 320


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.140    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,353,835
Number of Sequences: 539616
Number of extensions: 6144898
Number of successful extensions: 13568
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 13560
Number of HSP's gapped (non-prelim): 12
length of query: 351
length of database: 191,569,459
effective HSP length: 118
effective length of query: 233
effective length of database: 127,894,771
effective search space: 29799481643
effective search space used: 29799481643
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)