Query 018719
Match_columns 351
No_of_seqs 259 out of 549
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:00:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 1.4E-43 4.9E-48 352.4 16.1 219 107-337 83-356 (391)
2 2k1a_A Integrin alpha-IIB; sin 38.4 16 0.00056 24.8 2.0 20 29-48 7-26 (42)
3 2knc_A Integrin alpha-IIB; tra 37.5 17 0.00057 26.2 2.0 21 29-49 9-29 (54)
4 2l8s_A Integrin alpha-1; trans 36.4 24 0.00083 25.3 2.7 22 29-50 6-27 (54)
5 2fy7_A Beta-1,4-galactosyltran 16.5 5.9E+02 0.02 23.0 12.7 108 78-205 33-146 (287)
6 1o8r_A Guanylin; prohormone, G 15.1 39 0.0013 26.8 0.4 23 325-347 8-30 (94)
7 3arc_M Photosystem II reaction 13.6 99 0.0034 20.3 1.9 18 34-51 11-28 (36)
8 3arc_J Photosystem II reaction 12.0 1.7E+02 0.006 19.6 2.8 25 28-52 6-31 (40)
9 3hd7_B Syntaxin-1A; membrane p 11.8 65 0.0022 25.7 0.8 22 27-48 81-102 (109)
10 1rz2_A Conserved hypothetical 10.6 56 0.0019 29.7 0.0 25 27-51 8-32 (254)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=1.4e-43 Score=352.39 Aligned_cols=219 Identities=11% Similarity=0.139 Sum_probs=172.8
Q ss_pred CCcEEEEEEcCCCCchHHHHHHHHhc-CCCCceEEEEeCCCCCCC-------Cccceeeecc--cccccccCcchHHHHH
Q 018719 107 NPKVAFMFLTPGNLPFENLWEKFFHG-HEDRFSVYVHASSEKPMH-------VSRYFVGRDI--RSEKVAWGRISMLDAE 176 (351)
Q Consensus 107 ~~KIAFLfLt~~~l~l~~Lwe~ff~g-~~~~~sIYVHvD~ks~~~-------~s~vF~~r~I--ps~~V~WG~~SlVeAe 176 (351)
.+||||||++||++ +.|+++|++ .++.+.||||+|++++.. ..+.|.+..| ++..|.||++|||+||
T Consensus 83 ~~kiAflil~h~d~---~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~A~ 159 (391)
T 2gak_A 83 GFPIAYSIVVHHKI---EMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTRVKAD 159 (391)
T ss_dssp TSCEEEEEEECSCH---HHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECSSCCCCCTTSHHHHHHH
T ss_pred CCCEEEEEEecCCH---HHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEeccCcccccCCchHHHHH
Confidence 47999999999986 577888886 467888999999998631 2345666665 3689999999999999
Q ss_pred HHHHHHHhcC-CCCCEEEEecCCCccCCChHHHHHHHhc-CCcccEEeecCCCCCCCCCccc----------------cc
Q 018719 177 KRLLAHALLD-PDNQQFVLLSDSCIPLHNFDYVYNYLMY-TNVSYVDCFEDPGPHGNGRYSE----------------HM 238 (351)
Q Consensus 177 lrLL~~AL~d-~~n~~FvLLSgsdiPL~sf~~Iy~~L~~-~~~sFIe~~~~p~~~~~~RY~~----------------~m 238 (351)
++||++||++ .+|+|||||||+|+||+++++|++||+. .+++||++.++++.. .+|+.. ++
T Consensus 160 l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~~~-~~R~~~~~~~~~~~l~~~~~~k~~ 238 (391)
T 2gak_A 160 LNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK-EERWKKRYAVVDGKLTNTGIVKAP 238 (391)
T ss_dssp HHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCGGG-SHHHHEEEEEETTEEEEEEEECCC
T ss_pred HHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCccc-ccceEeeeeccccceeeecccccC
Confidence 9999999984 5999999999999999999999999997 899999999865421 233221 12
Q ss_pred CcccccccceecceeEEecHHHHHHHHhChHHHHHHHhhccCCCCCCcccccchhHHHhhcCcc-cCCc----------c
Q 018719 239 LPEVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHLEL-QIGL----------S 307 (351)
Q Consensus 239 lp~i~~~~~rkGSQWfsLtR~~A~~Iv~d~~~~~~Fk~~c~~~~~~~tc~pDEhyfpTLL~~~~-~~~i----------~ 307 (351)
+| ...+|++|||||+|||++|++|++|.. .++|.++|+ ++|+|||||||||+.+.+ +.++ +
T Consensus 239 ~P--~~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k-----~t~~pDE~ffqTll~~~~~pg~~~~~~~~~~~~~ 310 (391)
T 2gak_A 239 PP--LKTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQ-----DTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDM 310 (391)
T ss_dssp CS--CSSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHT-----TSSSGGGTHHHHHTTSTTSTTCCCSSGGGCBCTT
T ss_pred Cc--cccceecccceeEecHHHHHHHHhCCc-HHHHHHHHc-----CCcCCchhHHHHHhhccCCCCccccccccccccc
Confidence 23 146899999999999999999999965 678888998 579999999999998753 3322 4
Q ss_pred CCceeeeecCcc-----cccCCC-----------ccccCchhhhhc
Q 018719 308 HMPIGLKESGIQ-----KRIGHK-----------IFPLSSLRVLQP 337 (351)
Q Consensus 308 N~~LtYid~dws-----~~~~~~-----------~~~l~~~~~~~~ 337 (351)
|+++||++|+.. +|++|+ .+..+++..|++
T Consensus 311 ~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~ 356 (391)
T 2gak_A 311 NAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLR 356 (391)
T ss_dssp TSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTT
T ss_pred cCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHh
Confidence 789999974321 333343 478888877653
No 2
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=38.41 E-value=16 Score=24.83 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=14.6
Q ss_pred CCchhhHHHHHHHHHHHhhc
Q 018719 29 KRPIWIIAFVTFFIIFLTGV 48 (351)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~ 48 (351)
.-|.|||++.++..+.+++.
T Consensus 7 ~vp~wiIi~s~l~GLllL~l 26 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLTI 26 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHH
Confidence 45899998887776666554
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.51 E-value=17 Score=26.16 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=14.6
Q ss_pred CCchhhHHHHHHHHHHHhhcc
Q 018719 29 KRPIWIIAFVTFFIIFLTGVY 49 (351)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~ 49 (351)
.-|.|||++.++.++.+++..
T Consensus 9 ~vp~wiIi~svl~GLllL~li 29 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTIL 29 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHH
Confidence 458999988777666555543
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=36.44 E-value=24 Score=25.31 Aligned_cols=22 Identities=23% Similarity=0.635 Sum_probs=15.5
Q ss_pred CCchhhHHHHHHHHHHHhhccc
Q 018719 29 KRPIWIIAFVTFFIIFLTGVYV 50 (351)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~ 50 (351)
.-|.|||++.++.++.+++..+
T Consensus 6 ~vp~WiIi~svl~GLLLL~Lii 27 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLMLLI 27 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHH
Confidence 5689999887777666655433
No 5
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=16.53 E-value=5.9e+02 Score=23.04 Aligned_cols=108 Identities=15% Similarity=0.049 Sum_probs=62.7
Q ss_pred CCCCCCCHHHHHhhhh-hhh-hccCCCCCCCCCcEEEEEEcCCCC-chHHHHHHHH---hcCCCCceEEEEeCCCCCCCC
Q 018719 78 TPTRELTDAENIAQVV-FKE-ILNKPPVHSKNPKVAFMFLTPGNL-PFENLWEKFF---HGHEDRFSVYVHASSEKPMHV 151 (351)
Q Consensus 78 ~~~~~~~d~e~~~~~~-~~~-~~~~~~~~~~~~KIAFLfLt~~~l-~l~~Lwe~ff---~g~~~~~sIYVHvD~ks~~~~ 151 (351)
....+++.||+..... +.+ ..-.|+.-...++|+.+|-+++.. .+....+.+. +.....|.|+|=-| ..+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~gg~~~p~~c~~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdd-s~d--- 108 (287)
T 2fy7_A 33 EFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQ-AGD--- 108 (287)
T ss_dssp CCCSCCCHHHHHHHCTTCBTTTEECCSSSBCSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-CSS---
T ss_pred cccCCCCHHHHHhhCCCcccCCcCcCCCCCcCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEe-CCC---
Confidence 3345778888875421 111 111232223468999999998874 4666777665 34556778875333 111
Q ss_pred ccceeeecccccccccCcchHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCCh
Q 018719 152 SRYFVGRDIRSEKVAWGRISMLDAEKRLLAHALLDPDNQQFVLLSDSCIPLHNF 205 (351)
Q Consensus 152 s~vF~~r~Ips~~V~WG~~SlVeAelrLL~~AL~d~~n~~FvLLSgsdiPL~sf 205 (351)
++++...|.-..+..|++....+|++++-+.|+|..+.
T Consensus 109 ----------------~~f~~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 109 ----------------TIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp ----------------SCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred ----------------CccchhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCc
Confidence 11222233333343455555779999999999998774
No 6
>1o8r_A Guanylin; prohormone, GAP-I, precursor, prosequence; NMR {Homo sapiens} SCOP: d.234.1.1
Probab=15.06 E-value=39 Score=26.84 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=18.0
Q ss_pred CccccCchhhhhcccCcceEEee
Q 018719 325 KIFPLSSLRVLQPLMKPSTLLVM 347 (351)
Q Consensus 325 ~~~~l~~~~~~~~~~~~~~~~~~ 347 (351)
--++|||.|+|++|+..+.--..
T Consensus 8 fsf~LESVKkLk~L~e~~~~~~~ 30 (94)
T 1o8r_A 8 FSFSLESVKKLKDLQEPQEPRVG 30 (94)
T ss_dssp SEECSHHHHTTTTCCSSCCCCCS
T ss_pred EEeeHHHHHHHHHHhccCCCccc
Confidence 46899999999999987654433
No 7
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=13.56 E-value=99 Score=20.35 Aligned_cols=18 Identities=33% Similarity=0.395 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHhhcccc
Q 018719 34 IIAFVTFFIIFLTGVYVY 51 (351)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~ 51 (351)
.+++++++.+|++..|+=
T Consensus 11 t~Lfi~iPt~FLlilYvq 28 (36)
T 3arc_M 11 TALFVLVPSVFLIILYVQ 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhe
Confidence 456778889999999874
No 8
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=12.03 E-value=1.7e+02 Score=19.56 Aligned_cols=25 Identities=32% Similarity=0.773 Sum_probs=15.5
Q ss_pred CCCchhhHHHHHHH-HHHHhhccccc
Q 018719 28 LKRPIWIIAFVTFF-IIFLTGVYVYP 52 (351)
Q Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 52 (351)
-|-|.|+|..+... .+.+++.+.|-
T Consensus 6 GRiPLWlvgtv~G~~vi~~~giFfyG 31 (40)
T 3arc_J 6 GRIPLWIVATVAGMGVIVIVGLFFYG 31 (40)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccEEeeeeehhhhhhheeeEEEee
Confidence 45699999777654 34455555443
No 9
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=11.84 E-value=65 Score=25.70 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=12.2
Q ss_pred CCCCchhhHHHHHHHHHHHhhc
Q 018719 27 HLKRPIWIIAFVTFFIIFLTGV 48 (351)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~ 48 (351)
+.+|.+|++++++++.+.+++.
T Consensus 81 ~~rkk~~i~l~~~~i~~~i~~~ 102 (109)
T 3hd7_B 81 KARRKKIMIIICCVILGIIIAS 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcceehHHHHHHHHHHHHH
Confidence 3445677776655555444443
No 10
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, P structure initiative; 1.60A {Bacillus anthracis} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Probab=10.56 E-value=56 Score=29.66 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=0.0
Q ss_pred CCCCchhhHHHHHHHHHHHhhcccc
Q 018719 27 HLKRPIWIIAFVTFFIIFLTGVYVY 51 (351)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (351)
.+||-++.|+++.++++++.++|.+
T Consensus 8 ~mkk~i~~lli~i~l~~~l~~~~~l 32 (254)
T 1rz2_A 8 KKKIFFQRILTVVFLGTFFYSVYEL 32 (254)
T ss_dssp -------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777767777777776654
Done!