Query 018719
Match_columns 351
No_of_seqs 259 out of 549
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 05:00:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018719.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018719hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 51.4 55 0.004 26.1 10.9 109 108-220 1-122 (255)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 26.1 20 0.0015 21.6 2.3 24 29-52 1-25 (34)
3 d2qalc1 d.52.3.1 (C:1-105) Rib 13.2 40 0.0029 25.1 1.9 30 250-279 18-47 (105)
4 d1d4ta_ d.93.1.1 (A:) The Xlp 10.8 75 0.0054 22.3 2.7 22 162-183 3-24 (104)
5 d2uubc1 d.52.3.1 (C:2-106) Rib 10.8 29 0.0021 25.8 0.3 30 250-279 18-47 (105)
6 d1g83a2 d.93.1.1 (A:142-245) T 9.2 51 0.0037 23.5 1.2 35 162-198 5-39 (104)
7 d1iioa_ a.39.4.1 (A:) Hypothet 8.6 35 0.0025 24.8 -0.0 21 194-214 60-80 (84)
8 d1c9fa_ d.15.2.1 (A:) Caspase- 8.5 27 0.0019 25.6 -0.7 15 285-300 55-69 (87)
9 d1x4ka2 g.39.1.3 (A:8-34) Four 7.9 50 0.0036 18.8 0.5 8 15-22 6-13 (27)
10 d1rjaa_ d.93.1.1 (A:) Tyrosine 7.5 50 0.0036 23.6 0.4 20 163-182 2-21 (100)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=51.37 E-value=55 Score=26.06 Aligned_cols=109 Identities=8% Similarity=0.115 Sum_probs=64.1
Q ss_pred CcEEEEEEcCCCC-chHHHHHHHHhcCCCCceEEEEeCCCCCCCC---ccceeeec---ccccccc----cCcchHHHHH
Q 018719 108 PKVAFMFLTPGNL-PFENLWEKFFHGHEDRFSVYVHASSEKPMHV---SRYFVGRD---IRSEKVA----WGRISMLDAE 176 (351)
Q Consensus 108 ~KIAFLfLt~~~l-~l~~Lwe~ff~g~~~~~sIYVHvD~ks~~~~---s~vF~~r~---Ips~~V~----WG~~SlVeAe 176 (351)
|||+.++-|++.. -+++.++..+.-....+.|+|+-|...+... .......+ +...... =...+.-.|-
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~ 80 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALI 80 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhcccc
Confidence 7999999997654 4788888877767778999999886543100 00000000 0111111 1233444454
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhc-CCcccE
Q 018719 177 KRLLAHALLDPDNQQFVLLSDSCIPLHN-FDYVYNYLMY-TNVSYV 220 (351)
Q Consensus 177 lrLL~~AL~d~~n~~FvLLSgsdiPL~s-f~~Iy~~L~~-~~~sFI 220 (351)
-..++.| +.+|+++|-+.|++..+ .+.+.+++.. .+..++
T Consensus 81 N~gi~~a----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v 122 (255)
T d1qg8a_ 81 NQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred ccccccc----ccccccccccccccccchHHHHHHHHHhCCCCCeE
Confidence 4555555 56899999999998755 3444455654 445555
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=26.07 E-value=20 Score=21.65 Aligned_cols=24 Identities=33% Similarity=0.761 Sum_probs=14.9
Q ss_pred CCchhhHHHHHHHH-HHHhhccccc
Q 018719 29 KRPIWIIAFVTFFI-IFLTGVYVYP 52 (351)
Q Consensus 29 ~~~~~~~~~~~~~~-~~~~~~~~~~ 52 (351)
|-|.|++..+..+. +.+++.+.|-
T Consensus 1 riPLWlv~tv~G~~vi~~vG~FfYG 25 (34)
T d2axtj1 1 RIPLWIVATVAGMGVIVIVGLFFYG 25 (34)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEeeehhhhhhHhheeeeeee
Confidence 35899988776553 4455555543
No 3
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.16 E-value=40 Score=25.08 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=24.7
Q ss_pred cceeEEecHHHHHHHHhChHHHHHHHhhcc
Q 018719 250 GSQWFTLKRQHAMIIMADSLYYTKFKHYCK 279 (351)
Q Consensus 250 GSQWfsLtR~~A~~Iv~d~~~~~~Fk~~c~ 279 (351)
.|.||+=.++.+.+|.+|........+++.
T Consensus 18 ~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2qalc1 18 NSTWFANTKEFADNLDSDFKVRQYLTKELA 47 (105)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCEEcCCccchHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999887666666554
No 4
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.76 E-value=75 Score=22.29 Aligned_cols=22 Identities=41% Similarity=0.394 Sum_probs=18.6
Q ss_pred ccccccCcchHHHHHHHHHHHH
Q 018719 162 SEKVAWGRISMLDAEKRLLAHA 183 (351)
Q Consensus 162 s~~V~WG~~SlVeAelrLL~~A 183 (351)
+.+-+||.+|--+||..|.+..
T Consensus 3 ~~pwyhG~isR~eAe~lL~~~~ 24 (104)
T d1d4ta_ 3 AVAVYHGKISRETGEKLLLATG 24 (104)
T ss_dssp TCTTBCCSCCHHHHHHHHHHHC
T ss_pred cCCccccCCCHHHHHHHHhhCC
Confidence 4678999999999999887764
No 5
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=10.75 E-value=29 Score=25.84 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=24.9
Q ss_pred cceeEEecHHHHHHHHhChHHHHHHHhhcc
Q 018719 250 GSQWFTLKRQHAMIIMADSLYYTKFKHYCK 279 (351)
Q Consensus 250 GSQWfsLtR~~A~~Iv~d~~~~~~Fk~~c~ 279 (351)
.|.||+=.++.+.+|.+|......+++++.
T Consensus 18 ~S~W~a~~~~y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2uubc1 18 ESRWYAGKKQYRHLLLEDQRIRGLLEKELY 47 (105)
T ss_dssp SCBCCCCTTTTTHHHHHHHHHHHHHHHSTT
T ss_pred CceEcCChhhhHHHHHHHHHHHHHHHhhcc
Confidence 699999899999999999887766666553
No 6
>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.17 E-value=51 Score=23.50 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=24.1
Q ss_pred ccccccCcchHHHHHHHHHHHHhcCCCCCEEEEecCC
Q 018719 162 SEKVAWGRISMLDAEKRLLAHALLDPDNQQFVLLSDS 198 (351)
Q Consensus 162 s~~V~WG~~SlVeAelrLL~~AL~d~~n~~FvLLSgs 198 (351)
+.+-+||.+|.-+||..|++..-.|+ .+.|=-|++
T Consensus 5 ~~~Wy~g~i~R~eAe~~L~~~g~~~G--~FLVR~S~~ 39 (104)
T d1g83a2 5 AEEWYFGKLGRKDAERQLLSFGNPRG--TFLIRESET 39 (104)
T ss_dssp GSSSBCTTCCHHHHHHHHHSTTCCTT--CEEEEECSS
T ss_pred cCCCcCCCCCHHHHHHHHHhcCCCCC--cEEEeccCC
Confidence 45678899999999999976653333 444445544
No 7
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=8.61 E-value=35 Score=24.76 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=17.5
Q ss_pred EecCCCccCCChHHHHHHHhc
Q 018719 194 LLSDSCIPLHNFDYVYNYLMY 214 (351)
Q Consensus 194 LLSgsdiPL~sf~~Iy~~L~~ 214 (351)
+|+++|+|+++.+++.+-+..
T Consensus 60 ~l~~~DFP~ksae~lad~ii~ 80 (84)
T d1iioa_ 60 VLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHHH
T ss_pred hcCcccCCCCCHHHHHHHHHH
Confidence 577899999999999887653
No 8
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.52 E-value=27 Score=25.56 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=11.2
Q ss_pred CcccccchhHHHhhcC
Q 018719 285 RNCYADEHYLPTLFHL 300 (351)
Q Consensus 285 ~tc~pDEhyfpTLL~~ 300 (351)
.|.+ ||.|||||=.|
T Consensus 55 GT~V-dEeYF~tLp~n 69 (87)
T d1c9fa_ 55 GTEV-TDDCFPGLPND 69 (87)
T ss_dssp TCCB-CTTSCSSCCTT
T ss_pred CcEe-cHHHHhcCCCC
Confidence 4555 88999998654
No 9
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.88 E-value=50 Score=18.82 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=6.1
Q ss_pred ceeccccc
Q 018719 15 FQMMAGYR 22 (351)
Q Consensus 15 ~~~~~~~~ 22 (351)
-.||||+|
T Consensus 6 ktiMPGsr 13 (27)
T d1x4ka2 6 KTIMPGTR 13 (27)
T ss_dssp CCCCSSSC
T ss_pred ccccCCce
Confidence 45788888
No 10
>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.49 E-value=50 Score=23.62 Aligned_cols=20 Identities=40% Similarity=0.406 Sum_probs=16.0
Q ss_pred cccccCcchHHHHHHHHHHH
Q 018719 163 EKVAWGRISMLDAEKRLLAH 182 (351)
Q Consensus 163 ~~V~WG~~SlVeAelrLL~~ 182 (351)
.+-+||.+|.-+||..|++.
T Consensus 2 epWy~g~isR~~Ae~~L~~~ 21 (100)
T d1rjaa_ 2 EPWFFGCISRSEAVRRLQAE 21 (100)
T ss_dssp CCCBCTTCCHHHHHHHHSST
T ss_pred CCCcCCCCCHHHHHHHHhcc
Confidence 45578999999999987644
Done!