BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018720
         (351 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VSW|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSW|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|1VSX|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
 pdb|3JV8|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
           Anthracis
          Length = 153

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 170 LLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLD 216
           + + +LVG GL +  +   F E++    L   +  LKR  +E+N +D
Sbjct: 2   VFEGHLVGTGLKVGVVVGRFNEFITSKLLGGALDGLKRHGVEENDID 48


>pdb|2LIU|A Chain A, Nmr Structure Of Holo-Acpi Domain From Cura Module From
           Lyngbya Majuscula
 pdb|2LIW|A Chain A, Nmr Structure Of Hmg-Acpi Domain From Cura Module From
           Lyngbya Majuscula
          Length = 99

 Score = 27.7 bits (60), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 236 GLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEE--TEMSEVIESVK 278
           GL+P   +   ++ +V L ++K  L  Q+AE   TE SE+ E  K
Sbjct: 2   GLVPRGSHMTPQVNQVNLSEIKQVLKQQLAEALYTEESEIAEDQK 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,508,154
Number of Sequences: 62578
Number of extensions: 377955
Number of successful extensions: 1235
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1233
Number of HSP's gapped (non-prelim): 11
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)