Query 018720
Match_columns 351
No_of_seqs 81 out of 83
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 03:28:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2297 Predicted translation 100.0 2E-130 4E-135 944.8 28.2 336 1-340 2-340 (412)
2 KOG2140 Uncharacterized conser 82.1 11 0.00025 40.8 10.3 134 104-242 504-640 (739)
3 PF09371 Tex_N: Tex-like prote 68.4 34 0.00074 32.0 8.7 85 209-301 90-177 (193)
4 KOG1461 Translation initiation 65.6 26 0.00055 38.6 8.1 78 252-331 508-588 (673)
5 PF03299 TF_AP-2: Transcriptio 64.4 49 0.0011 31.4 8.9 138 182-348 40-193 (209)
6 smart00544 MA3 Domain in DAP-5 61.5 26 0.00057 28.5 5.9 59 102-163 52-113 (113)
7 PF07631 PSD4: Protein of unkn 61.1 73 0.0016 27.8 8.9 71 172-275 42-112 (128)
8 PF02847 MA3: MA3 domain; Int 60.6 26 0.00056 28.4 5.7 60 101-163 51-113 (113)
9 PF13764 E3_UbLigase_R4: E3 ub 57.2 70 0.0015 36.1 9.9 165 103-280 239-420 (802)
10 TIGR01806 CM_mono2 chorismate 51.1 24 0.00053 30.1 4.2 66 236-302 5-71 (114)
11 PF08542 Rep_fac_C: Replicatio 48.7 95 0.0021 24.2 6.9 33 269-302 19-51 (89)
12 PRK09940 transcriptional regul 46.0 1.4E+02 0.003 29.0 8.9 160 99-291 54-230 (253)
13 PF13972 TetR: Bacterial trans 44.0 59 0.0013 27.8 5.5 65 99-163 20-84 (146)
14 PF04286 DUF445: Protein of un 41.9 3.2E+02 0.007 26.2 15.7 60 144-204 104-166 (367)
15 TIGR01797 CM_P_1 chorismate mu 41.5 59 0.0013 26.0 4.8 63 239-302 14-77 (83)
16 KOG0396 Uncharacterized conser 40.2 3.5E+02 0.0076 28.3 11.0 35 102-136 55-89 (389)
17 TIGR01803 CM-like chorismate m 39.1 58 0.0013 25.9 4.4 63 239-302 14-77 (82)
18 PRK11448 hsdR type I restricti 38.8 7.2E+02 0.016 29.4 15.2 173 121-312 855-1065(1123)
19 PRK14703 glutaminyl-tRNA synth 37.9 2.7E+02 0.0058 31.5 10.6 82 198-302 645-726 (771)
20 PF10193 Telomere_reg-2: Telom 37.1 1.4E+02 0.003 25.4 6.6 66 99-171 18-90 (114)
21 PF04286 DUF445: Protein of un 36.7 3.5E+02 0.0075 26.0 10.1 35 137-174 33-68 (367)
22 PF07528 DZF: DZF domain; Int 35.5 37 0.00081 32.9 3.2 49 67-116 182-233 (248)
23 PF14026 DUF4242: Protein of u 30.1 30 0.00064 27.6 1.3 27 81-108 39-65 (77)
24 PF08102 Antimicrobial_7: Scor 29.5 58 0.0013 23.9 2.6 31 295-325 3-35 (43)
25 PLN03196 MOC1-like protein; Pr 29.4 4.7E+02 0.01 27.7 10.3 50 92-142 114-176 (487)
26 PLN03025 replication factor C 28.7 5.5E+02 0.012 24.9 10.9 36 254-289 241-276 (319)
27 COG5424 Pyrroloquinoline quino 27.7 1.4E+02 0.003 29.3 5.7 64 182-246 120-200 (242)
28 PF14821 Thr_synth_N: Threonin 27.3 56 0.0012 26.0 2.5 46 26-71 10-62 (79)
29 smart00830 CM_2 Chorismate mut 27.3 1.2E+02 0.0026 23.2 4.3 32 270-302 42-73 (79)
30 PF09090 MIF4G_like_2: MIF4G l 27.0 1.6E+02 0.0034 28.1 5.9 70 255-331 12-85 (253)
31 PF14223 UBN2: gag-polypeptide 26.6 3.5E+02 0.0077 22.0 7.4 74 251-324 23-109 (119)
32 PRK14136 recX recombination re 26.3 6.2E+02 0.013 25.7 10.1 90 102-216 157-246 (309)
33 PF10366 Vps39_1: Vacuolar sor 26.2 3.8E+02 0.0082 22.5 7.4 49 186-247 3-52 (108)
34 PRK10167 hypothetical protein; 25.9 2.6E+02 0.0056 25.8 6.8 82 101-197 70-152 (169)
35 PF02637 GatB_Yqey: GatB domai 25.8 2.4E+02 0.0052 24.4 6.4 84 198-302 21-104 (148)
36 KOG2297 Predicted translation 25.7 89 0.0019 32.3 4.1 270 2-284 6-352 (412)
37 PRK06285 chorismate mutase; Pr 25.6 1.4E+02 0.0029 24.6 4.5 32 270-302 54-85 (96)
38 PF12085 DUF3562: Protein of u 25.6 1.6E+02 0.0034 23.6 4.6 45 273-330 6-50 (66)
39 PF08506 Cse1: Cse1; InterPro 25.0 6.2E+02 0.013 25.9 10.0 32 290-323 137-168 (370)
40 PF09832 DUF2059: Uncharacteri 25.0 1E+02 0.0023 22.9 3.5 32 225-256 10-41 (64)
41 TIGR01799 CM_T chorismate muta 23.9 1.5E+02 0.0032 23.6 4.4 32 270-302 46-77 (83)
42 PHA02690 hypothetical protein; 23.8 76 0.0016 26.4 2.6 30 43-72 22-51 (90)
43 TIGR02568 LcrE type III secret 23.3 4.4E+02 0.0096 25.1 8.2 115 109-233 98-218 (240)
44 PRK06034 hypothetical protein; 22.5 1.7E+02 0.0036 29.2 5.2 81 219-302 5-87 (279)
45 cd01051 Mn_catalase Manganese 22.4 4.6E+02 0.01 23.5 7.7 103 28-137 19-139 (156)
46 PF05184 SapB_1: Saposin-like 21.7 2.3E+02 0.0049 18.8 4.3 29 253-281 7-35 (39)
47 TIGR03147 cyt_nit_nrfF cytochr 21.7 1.4E+02 0.003 26.5 4.0 34 251-284 57-90 (126)
48 PF10265 DUF2217: Uncharacteri 21.4 1.3E+02 0.0029 32.3 4.6 95 189-301 315-426 (514)
49 PF01817 CM_2: Chorismate muta 21.1 1.3E+02 0.0029 23.3 3.5 32 270-302 42-73 (81)
50 PRK08311 putative RNA polymera 21.1 6E+02 0.013 24.2 8.6 80 189-274 73-152 (237)
51 TIGR01503 MthylAspMut_E methyl 21.1 1.2E+02 0.0027 32.3 4.2 124 64-223 154-300 (480)
52 PRK10144 formate-dependent nit 21.0 1.4E+02 0.0031 26.4 4.0 34 251-284 57-90 (126)
53 TIGR02100 glgX_debranch glycog 20.7 2.2E+02 0.0049 31.4 6.3 95 29-123 401-575 (688)
54 PF04255 DUF433: Protein of un 20.4 87 0.0019 23.3 2.2 31 5-51 10-40 (56)
55 PF13271 DUF4062: Domain of un 20.3 55 0.0012 25.9 1.2 41 185-227 4-44 (83)
No 1
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-130 Score=944.75 Aligned_cols=336 Identities=48% Similarity=0.767 Sum_probs=329.6
Q ss_pred CCCCCCCCCCccccccccccccCCCCchhhHHHHHHHhhhCCCCHHHHHHHh--hcCCccchhhhhhhhHhhhhcCcCCC
Q 018720 1 MSSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCI--ESSDLNFSRYGDTFFEVVFTGGRTQP 78 (351)
Q Consensus 1 ~~~~~kP~L~G~RiKTRKRd~k~k~dP~~FrDalv~~l~~~~gdLEavak~L--~gs~LdyrRY~e~LFdIl~aGGlLaP 78 (351)
|++++||+|+||||||||||++++|||++|||++||||++++||||+|||+| +|++||||||||+||||+|+||+++|
T Consensus 2 ~~k~~kp~lsg~riktrKr~~~e~~dp~~f~da~vq~~~~~~gdle~vak~ldssg~~l~~~rYgd~~fdil~~gg~~~p 81 (412)
T KOG2297|consen 2 SQKTEKPVLSGQRIKTRKRDEAEKLDPTAFRDAVVQGLEDNAGDLELVAKSLDSSGNDLDYRRYGDILFDILFAGGRLQP 81 (412)
T ss_pred CccccCCCCCCccchhhhccccccCCCccHHHHHHHHHHhcCccHHHHHHHHHhccccccHHHHHHHHHHHHHHhcccCC
Confidence 5789999999999999999999999999999999999999999999999999 68899999999999999999999999
Q ss_pred CCcCcCCCC-CCCceeeccCcchhhhhhHHHHHHHHHhhhhhhHHHhHHHHHHHHHhhhccChhhhHHHHHHHHHHHhhh
Q 018720 79 GTTKPDEGE-RHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQK 157 (351)
Q Consensus 79 GG~~~~dg~-~~~~cif~a~~~~e~i~~y~qvf~KLiRRykYL~K~lEe~~~klL~~l~~F~~~~R~KLA~~tal~~s~k 157 (351)
||+.+|||+ +++||||+|++++|+|++|+|||||||||||||+|+|||+|+|+|+||++|+|++|+||||+||+|++
T Consensus 82 g~~~sddge~~t~~cvfda~e~~E~i~~~~qvf~KliRRykyLeK~fE~e~~k~Llflk~F~e~Er~KLA~~Tal~l~-- 159 (412)
T KOG2297|consen 82 GGVKSDDGERHTSYCVFDAEEKREAIRNSVQVFQKLIRRYKYLEKNFENEMRKFLLFLKLFEENERKKLAMLTALLLS-- 159 (412)
T ss_pred CCccccccCccCceeEeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh--
Confidence 999999998 56799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchhhhhhhhhhhhcccchHHHHHHHHHHHHhhcChhHHHHHHHhccccccccccCCCCCCCHHHHHHHHhhcCC
Q 018720 158 LSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGL 237 (351)
Q Consensus 158 ~~G~~p~~vL~~L~~dhLVkdG~aL~F~t~~F~~~l~e~~~~~L~s~LrK~gld~rLleffP~nKRs~e~f~~~F~~~GL 237 (351)
||++|++||++|+||||||+|++++|++++|++|++|+|+++|+|+||||+|||||||||||||||.|||++||+++||
T Consensus 160 -nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmeffPpnkrs~E~Fak~Ft~agL 238 (412)
T KOG2297|consen 160 -NGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKDINDLISSLRKGKMDDRLMEFFPPNKRSVEHFAKYFTDAGL 238 (412)
T ss_pred -CCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhccHHHHHHHHHhcChHhHHHHhcCCcchhHHHHHHHHhHhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhccccCchhhhhHHHH
Q 018720 238 IPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAA 317 (351)
Q Consensus 238 ~~lve~~~kq~~~~~kkeLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~sveWs~K~eq~~~eqA 317 (351)
.++|+|+++|+++++++|||+.|++++++|.|++|||.+||++|++++|||++||++||+|||++|+|||| +|+++|||
T Consensus 239 ~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKk-eelva~qa 317 (412)
T KOG2297|consen 239 KELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKK-EELVAEQA 317 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchH-HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977 99999999
Q ss_pred HHHHhhhHHHhHHHhhchhHHHH
Q 018720 318 LRQVSTKSVLCLCAASHQLYLIA 340 (351)
Q Consensus 318 lr~lk~yapLL~af~~~~~~~~~ 340 (351)
+||||+|+|||+||||+|---..
T Consensus 318 lrhlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 318 LRHLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHHHhhhHHHHHHhcCChHHHH
Confidence 99999999999999999854433
No 2
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=82.12 E-value=11 Score=40.79 Aligned_cols=134 Identities=22% Similarity=0.234 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHhhhhhhHHHhHHHHHHHHHhhhccChhhhHHHHHHHHHHHhhhhcCCCCchhhhh--hhhhhhhcccch
Q 018720 104 LPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQP--LLKDNLVGKGLV 181 (351)
Q Consensus 104 ~~y~qvf~KLiRRykYL~K~lEe~~~klL~~l~~F~~~~R~KLA~~tal~~s~k~~G~~p~~vL~~--L~~dhLVkdG~a 181 (351)
|=|--+-.++++=++-.+-.||+..+.--..|+.++-..-.-||.+-|.+++ ...+|=.||.- |+.|.-...|-
T Consensus 504 kFYglL~eRfc~l~r~~q~~fe~~f~q~YstIhr~EtnkLRnlakffahLls---td~lpw~vl~~ikLTEEdTtsssR- 579 (739)
T KOG2140|consen 504 KFYGLLGERFCMLHREWQEAFEKCFKQQYSTIHRYETNKLRNLAKFFAHLLS---TDALPWDVLACIKLTEEDTTSSSR- 579 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc---ccccchHHHHHhhcccccCCccce-
Confidence 3344455666666677778888877666666999988888899999999999 99999999987 44444333332
Q ss_pred HHHHHHHHHHHHhhcChhHHHHHHHhccccccccccCCCC-CCCHHHHHHHHhhcCChhHHH
Q 018720 182 LSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSS-KRSAEGFSEHFTKEGLIPLVE 242 (351)
Q Consensus 182 L~F~t~~F~~~l~e~~~~~L~s~LrK~gld~rLleffP~n-KRs~e~f~~~F~~~GL~~lve 242 (351)
=|+--+|+....+-|++.|-.-|.-..|...|-.+||.. -|+...=-..|+.-||+-|-+
T Consensus 580 -IfiKilFqELve~lGl~~L~~RL~dptl~~~l~glFP~dnp~n~RfsINfFTsIGLGgLTe 640 (739)
T KOG2140|consen 580 -IFIKILFQELVEALGLDKLNERLNDPTLQPKLEGLFPRDNPRNTRFSINFFTSIGLGGLTE 640 (739)
T ss_pred -ehHHHHHHHHHHHhChHHHHHHhcCcchhhhhhccCcCCCcccceeeeehhhhhccccchH
Confidence 388899999999999999999999999988899999964 445555567899999987743
No 3
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=68.45 E-value=34 Score=31.98 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=53.2
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCChhHHHHHHhhhHHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHhcC
Q 018720 209 KMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEE---TEMSEVIESVKQRVKDAK 285 (351)
Q Consensus 209 gld~rLleffP~nKRs~e~f~~~F~~~GL~~lve~~~kq~~~~~kkeLq~~L~~~i~~e---~~~~eIi~~vKe~~ke~~ 285 (351)
.++| |..=|=|.|+|-.. .=++.||..++++.-.+... .....+...++.+ .++++++.-+++...+.-
T Consensus 90 elEd-lY~PyK~kr~T~A~---~Are~GLeplA~~il~~~~~----~~~~~a~~~v~~~~gv~s~e~al~Ga~dIiAE~i 161 (193)
T PF09371_consen 90 ELED-LYLPYKPKRKTRAT---IAREAGLEPLADKILEQPES----DPEVEAKKFVNEEKGVPSVEEALAGAQDIIAERI 161 (193)
T ss_dssp HHHH-HHGGGS---S-HHH---HHHHTTTHHHHHHHHH-TTS-----HHHHHHTT-BGGGTB-SHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHhhhccCcCCHHH---HHHHcCCHHHHHHHHcCCcc----chHHHHHHHhCcccCCCCHHHHHHhHHHHHHHHH
Confidence 4455 66666667777766 55689999999999888765 2333444444443 568889999999888888
Q ss_pred CCchHHHHHHHHHhhh
Q 018720 286 LPDIEVVRILWDILMD 301 (351)
Q Consensus 286 lpe~evv~~iW~~lM~ 301 (351)
--|.++...+=..+..
T Consensus 162 s~d~~~r~~lr~~~~~ 177 (193)
T PF09371_consen 162 SEDPELREKLRKLLWK 177 (193)
T ss_dssp TT-HHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHh
Confidence 8888777666544443
No 4
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=65.61 E-value=26 Score=38.58 Aligned_cols=78 Identities=17% Similarity=0.156 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhc---cccCchhhhhHHHHHHHHhhhHHHh
Q 018720 252 KLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAV---QWSGKNQQQNANAALRQVSTKSVLC 328 (351)
Q Consensus 252 ~kkeLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~sv---eWs~K~eq~~~eqAlr~lk~yapLL 328 (351)
-.+|.+.+|+..++++-...-+|..+....--.+++.+||.+-+..++|.-+ +-|+-++ +-.++++-.++|+||+
T Consensus 508 F~~Ev~~s~~ra~Een~~~D~~vlEINslRla~N~s~~ev~~av~~all~~~~~~~~~~~~~--~~~~~~~~~~~w~~l~ 585 (673)
T KOG1461|consen 508 FEKEVLGSLQRAFEENSDMDNLVLEINSLRLAYNVSLKEVAGAVFMALLKLILHQDHSSMNE--VKRAALKVFTQWGPLL 585 (673)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHhhhHHhhcCCHHHHHHHHHHHHHHHHhcCCCccchh--HHHHHHHHHHHhhHHh
Confidence 3588999999999999999999999999999999999999999999999665 4454423 6679999999999998
Q ss_pred HHH
Q 018720 329 LCA 331 (351)
Q Consensus 329 ~af 331 (351)
.-.
T Consensus 586 ~~y 588 (673)
T KOG1461|consen 586 GNY 588 (673)
T ss_pred hhh
Confidence 644
No 5
>PF03299 TF_AP-2: Transcription factor AP-2; InterPro: IPR013854 Activator protein-2 (AP-2) transcription factors constitute a family of closely related and evolutionarily conserved proteins that bind to the DNA consensus sequence GCCNNNGGC and stimulate target gene transcription [, ]. Four different isoforms of AP-2 have been identified in mammals, termed AP-2 alpha, beta, gamma and delta. Each family member shares a common structure, possessing a proline/glutamine-rich domain in the N-terminal region, which is responsible for transcriptional activation [], and a helix-span-helix domain in the C-terminal region, which mediates dimerisation and site-specific DNA binding []. The AP-2 family have been shown to be critical regulators of gene expression during embryogenesis. They regulate the development of facial prominence and limb buds, and are essential for cranial closure and development of the lens []; they have also been implicated in tumourigenesis. AP-2 protein expression levels have been found to affect cell transformation, tumour growth and metastasis, and may predict survival in some types of cancer [, ] This entry represents the C-terminal region of these proteins, including the helix-span-helix domain.
Probab=64.39 E-value=49 Score=31.37 Aligned_cols=138 Identities=13% Similarity=0.126 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhcChhHHHHHHHhccccccccccCCCCCCCHH---HHHHHHhhcCChhHHHHHHhhhHHHHHHHHHH
Q 018720 182 LSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAE---GFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKS 258 (351)
Q Consensus 182 L~F~t~~F~~~l~e~~~~~L~s~LrK~gld~rLleffP~nKRs~e---~f~~~F~~~GL~~lve~~~kq~~~~~kkeLq~ 258 (351)
++-+--+++--++.++...|-..|.+-||. | |.+.|... -|....+++ =-.|-.
T Consensus 40 ~S~lg~~LRraK~k~~g~~lr~~L~~~gi~--l----~~~rrk~~~~t~~tsL~EgE-----------------AvhLA~ 96 (209)
T PF03299_consen 40 ASLLGGVLRRAKSKNGGRSLREKLEKHGIN--L----PAGRRKAANVTLFTSLVEGE-----------------AVHLAR 96 (209)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHcCCC--C----ccccccccccchhHHHHHHH-----------------HHHHHH
Confidence 344445555555555666666666666654 2 55555332 111111111 123455
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcC---CCchHHHHHHHHHhhh------hcc---ccCchhhhhHHHHH-HHHhhhH
Q 018720 259 TLTTQIAEETEMSEVIESVKQRVKDAK---LPDIEVVRILWDILMD------AVQ---WSGKNQQQNANAAL-RQVSTKS 325 (351)
Q Consensus 259 ~L~~~i~~e~~~~eIi~~vKe~~ke~~---lpe~evv~~iW~~lM~------sve---Ws~K~eq~~~eqAl-r~lk~ya 325 (351)
.+....+.+-|.++|.+++-....... .....++.--|+.+|+ ++. |+.+ +....|..+ ..+..|
T Consensus 97 D~~~~~~~~fP~~~lA~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~l~~~~~pl~~~~-p~~~~e~~l~~~l~~F- 174 (209)
T PF03299_consen 97 DFGYLCETEFPAKALAEYLVRQHLDPGNEVVIRKNMLLAAFQICKELSDLLSQDRPPLGGRR-PKPSLEPSLQSCLEHF- 174 (209)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCCCC-CCCCcchhHHHHHHHH-
Confidence 566667778889988877766655441 1112233334444442 221 5555 444443333 344444
Q ss_pred HHhHHHhhchhHHHHHHHHHHHh
Q 018720 326 VLCLCAASHQLYLIAFSLIIHAV 348 (351)
Q Consensus 326 pLL~af~~~~~~~~~~~~~~~~~ 348 (351)
+++|||+-.-|....++++
T Consensus 175 ----Sl~THGFG~~a~~a~l~~~ 193 (209)
T PF03299_consen 175 ----SLITHGFGHPAICAWLTAF 193 (209)
T ss_pred ----HHhhccCChHHHHHHHHHH
Confidence 3678888777766666554
No 6
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=61.48 E-value=26 Score=28.53 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=51.7
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHhHHHHHHHHHhhhccCh---hhhHHHHHHHHHHHhhhhcCCCC
Q 018720 102 AILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEE---NERKKLAIFTALAFSQKLSGLPP 163 (351)
Q Consensus 102 ~i~~y~qvf~KLiRRykYL~K~lEe~~~klL~~l~~F~~---~~R~KLA~~tal~~s~k~~G~~p 163 (351)
.-..|.+++..|..+...-...|+.-+.+++..++-.+- ....-+|.+.|.+++ +|.+|
T Consensus 52 ~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~dl~~D~P~a~~~la~~~a~~v~---~~~l~ 113 (113)
T smart00544 52 YREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIEDLELDIPNAWRNLAEFVARLIS---DGILP 113 (113)
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChhhhcccccHHHHHHHHHHHHHH---cCCCC
Confidence 456788899999989999999999999999999998855 578999999999999 99886
No 7
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=61.14 E-value=73 Score=27.78 Aligned_cols=71 Identities=15% Similarity=0.294 Sum_probs=49.0
Q ss_pred hhhhhcccchHHHHHHHHHHHHhhcChhHHHHHHHhccccccccccCCCCCCCHHHHHHHHhhcCChhHHHHHHhhhHHH
Q 018720 172 KDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEV 251 (351)
Q Consensus 172 ~dhLVkdG~aL~F~t~~F~~~l~e~~~~~L~s~LrK~gld~rLleffP~nKRs~e~f~~~F~~~GL~~lve~~~kq~~~~ 251 (351)
-+.+++|--+-.|+..|+..||.-..++ ..+++...-..| ...-...
T Consensus 42 ~~RML~dpr~~~~~~~F~~qWL~l~~~~-----------------~~~~d~~~~p~~----------------~~~l~~~ 88 (128)
T PF07631_consen 42 AERMLADPRARRFVERFFRQWLDLDRLD-----------------SIVKDPEKFPEF----------------SPDLREA 88 (128)
T ss_pred HHHHHcCccHHHHHHHHHHHHhCCCccc-----------------ccCCChhhcccc----------------CHHHHHH
Confidence 3567788888999999999999766332 223322211222 1223466
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHH
Q 018720 252 KLKDMKSTLTTQIAEETEMSEVIE 275 (351)
Q Consensus 252 ~kkeLq~~L~~~i~~e~~~~eIi~ 275 (351)
.+.|....+...+.++.|+.++++
T Consensus 89 m~~E~~~f~~~vl~~n~~~~~ll~ 112 (128)
T PF07631_consen 89 MREETDEFFEHVLEENGSVSELLT 112 (128)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHhc
Confidence 788999999999999999999874
No 8
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=60.55 E-value=26 Score=28.42 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=49.6
Q ss_pred hhhhhHHHHHHHHHhhhhhhHHHhHHHHHHHHHhhhccChh---hhHHHHHHHHHHHhhhhcCCCC
Q 018720 101 EAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEEN---ERKKLAIFTALAFSQKLSGLPP 163 (351)
Q Consensus 101 e~i~~y~qvf~KLiRRykYL~K~lEe~~~klL~~l~~F~~~---~R~KLA~~tal~~s~k~~G~~p 163 (351)
..-..|.+++..|+.+...-...+++-+.+++..+.-..-. .-.-+|.+.|.+++ .|.+|
T Consensus 51 ~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~~D~P~~~~~la~~~~~~i~---~~~lp 113 (113)
T PF02847_consen 51 SYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLEDLELDIPKAPEYLAKFLARLIA---DGILP 113 (113)
T ss_dssp HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH---TTSS-
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhhccccchHHHHHHHHHHHHHHH---cCCcC
Confidence 34567888999999999888888998888999888877544 78999999999999 99887
No 9
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=57.17 E-value=70 Score=36.12 Aligned_cols=165 Identities=19% Similarity=0.317 Sum_probs=89.5
Q ss_pred hhhHHHHHHHHHhhhhhhHHHhHHHHHHHHHhhhc---cChh-------hhHHHHHHHHHHHhhhhcCCCCchhhhhhhh
Q 018720 103 ILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLEL---FEEN-------ERKKLAIFTALAFSQKLSGLPPETVFQPLLK 172 (351)
Q Consensus 103 i~~y~qvf~KLiRRykYL~K~lEe~~~klL~~l~~---F~~~-------~R~KLA~~tal~~s~k~~G~~p~~vL~~L~~ 172 (351)
.++-.++.+-|+|=-|||--+-++-|.-++.+.+- |+.- ++.+|..|.-+. +|+.+ +--..-++
T Consensus 239 ~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~-----~~I~~-~~~G~~LK 312 (802)
T PF13764_consen 239 VRSNPQILQALARILPFLTYGNEEKMDALVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIA-----EGIPN-NSNGNRLK 312 (802)
T ss_pred ccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHHhcChhhcccccCchHHHHHHHHHHHH-----hcCCC-CCchHHHH
Confidence 44557788889999999988888877666655433 3322 345555555433 55554 44477888
Q ss_pred hhhhcccchHHHHHHHHHHHHhh---cChhHHHHHHHhccccccccccC----CCCCCCHHHHHHHHhhcCChhHHHHHH
Q 018720 173 DNLVGKGLVLSFITDFFKEYLVD---NSLDDLIAILKRGKMEDNLLDFF----PSSKRSAEGFSEHFTKEGLIPLVEYNE 245 (351)
Q Consensus 173 dhLVkdG~aL~F~t~~F~~~l~e---~~~~~L~s~LrK~gld~rLleff----P~nKRs~e~f~~~F~~~GL~~lve~~~ 245 (351)
+-++..|+. +.++.+.....-. .+.+.....|.|-++.- .+.++ =-+..|.. .+.+..| .++-.++
T Consensus 313 ~~Il~~GIv-~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~-iL~lL~GLa~gh~~tQ~----~~~~~~l-~~lH~LE 385 (802)
T PF13764_consen 313 DKILESGIV-QDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPY-ILRLLRGLARGHEPTQL----LIAEQLL-PLLHRLE 385 (802)
T ss_pred HHHHHhhHH-HHHHHHHHHhCcccccCCCHHHHHHhcCCcHHH-HHHHHHHHHhcCHHHHH----HHHhhHH-HHHHHhh
Confidence 888998975 3333322211111 12222333333333321 11111 11111222 1223344 4444455
Q ss_pred hhhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018720 246 KKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQR 280 (351)
Q Consensus 246 kq~~~~~kkeLq~~L~~~i~~e~~~~eIi~~vKe~ 280 (351)
.-.+....-.|-..|-+.++++..+.++|..|++.
T Consensus 386 qvss~~~IGslAEnlLeal~~~~~v~~~I~~lR~~ 420 (802)
T PF13764_consen 386 QVSSEEHIGSLAENLLEALAENEDVAKKIQNLRKE 420 (802)
T ss_pred cCCCccchHHHHHHHHHHHhcChhHHHHHHHHHHH
Confidence 55555666677788888888877778888777543
No 10
>TIGR01806 CM_mono2 chorismate mutase, putative. This model represents a clade of probable chorismate mutases from alpha, beta and gamma proteobacteria as well as Mycobacterium tuberculosis and a clade of nematodes. Although the most likely function for the enzymes represented by this model is as a chorismate mutase, in no species are these enzymes the sole chorismate mutase in the genome. Also, in no case are these enzymes located in a region of the genome proximal to any other enzymes involved in chorismate pathways. Although the Pantoea enzyme has been shown to complement a CM-free mutant of E. coli, this was also shown to be the case with isochorismate-pyruvate lyase which only has a secondary (non-physiologically relevant) chorismate mutase activity. This enzyme is believed to be a homodimer and be localized to the periplasm.
Probab=51.06 E-value=24 Score=30.15 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=43.3
Q ss_pred CChhHHHHHHhhhHHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhh
Q 018720 236 GLIPLVEYNEKKIFEVKL-KDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDA 302 (351)
Q Consensus 236 GL~~lve~~~kq~~~~~k-keLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~s 302 (351)
++++|++...++..-... -+++..-.--+.+..-.++|++.+.+..++.++++. .+.-||..+|++
T Consensus 5 ~~~eLv~Ll~eR~~la~eVa~~K~~~~~pI~Dp~RE~~Vl~~~~~~a~~~gL~~~-~i~~if~~Ii~~ 71 (114)
T TIGR01806 5 QLGQLVDAANERLQLADDVAGYKARNNLPIEDSPREEQVLDSLRAQAQSAGLDPD-YVTRFFQAQINA 71 (114)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHhHcCCCCHH-HHHHHHHHHHHH
Confidence 567888888888654333 222222111222223367999999999999888775 557789999987
No 11
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=48.66 E-value=95 Score=24.16 Aligned_cols=33 Identities=9% Similarity=0.335 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhh
Q 018720 269 EMSEVIESVKQRVKDAKLPDIEVVRILWDILMDA 302 (351)
Q Consensus 269 ~~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~s 302 (351)
+.+++-..+.+.+.+ .+|-.+++.-+-..++..
T Consensus 19 ~~~~~~~~~~~l~~~-G~s~~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 19 DFKEARKKLYELLVE-GYSASDILKQLHEVLVES 51 (89)
T ss_dssp CHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHh
Confidence 444555555555555 555555555555555544
No 12
>PRK09940 transcriptional regulator YdeO; Provisional
Probab=45.97 E-value=1.4e+02 Score=29.05 Aligned_cols=160 Identities=13% Similarity=0.072 Sum_probs=87.2
Q ss_pred chhhhhhHHHH--HHHHHh--hhhhhHHHhHHH--HHHHHHhhhccChhhhHHH--HHHHHHHHhhhhcCCCCchhhhhh
Q 018720 99 QREAILPSVIY--IQKILR--RRPFLIKNLENV--TRRFMQSLELFEENERKKL--AIFTALAFSQKLSGLPPETVFQPL 170 (351)
Q Consensus 99 ~~e~i~~y~qv--f~KLiR--RykYL~K~lEe~--~~klL~~l~~F~~~~R~KL--A~~tal~~s~k~~G~~p~~vL~~L 170 (351)
+-.+++.|.|- ++.+-+ .-+||.....+- +..++..++. +.+...++ ..+..++..+ . -....+..+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~ll~~l~~-e~~~~~~l~~~ll~~lL~~l---~-~~~~~~~~l 128 (253)
T PRK09940 54 NENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNS-EERNHHNFSELLLFSCLSIF---A-ACKGFITLL 128 (253)
T ss_pred cHHHHHHHHhhccccccccCCCchhHhcCCCCHHHHHHHHHHHHh-cchhhhHHHHHHHHHHHHHH---H-hCccHHHhh
Confidence 44589999776 566633 357999988883 7788888876 33333333 2333332110 0 001222222
Q ss_pred hhhhhhcccchHHHHHHHHHHHHhhcChhHHHHHHHhccccccccccCCCCCCCHHHHHHHHhhcCChhHHHHHHhhhHH
Q 018720 171 LKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFE 250 (351)
Q Consensus 171 ~~dhLVkdG~aL~F~t~~F~~~l~e~~~~~L~s~LrK~gld~rLleffP~nKRs~e~f~~~F~~~GL~~lve~~~kq~~~ 250 (351)
....+--+.-+.+++ -..+-..-+++.++..+ || |+.+|...|++.|. .+.+|....+-+
T Consensus 129 ~~~~~~~~~kv~~~I---~~~~~~~~tl~~LA~~~---gm-------------S~s~l~R~FK~~G~-T~~eyl~~~Rl~ 188 (253)
T PRK09940 129 TNGVLSVSGKVRNIV---NMKLAHPWKLKDICDCL---YI-------------SESLLKKKLKQEQT-TFSQILLDARMQ 188 (253)
T ss_pred ccccccHHHHHHHHH---HHhhcCCCCHHHHHHHH---Cc-------------CHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 222211111222222 12222223455554433 33 66799999999986 488998887776
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHH---------HHHHHhcCCCchHH
Q 018720 251 VKLKDMKSTLTTQIAEETEMSEVIESV---------KQRVKDAKLPDIEV 291 (351)
Q Consensus 251 ~~kkeLq~~L~~~i~~e~~~~eIi~~v---------Ke~~ke~~lpe~ev 291 (351)
.+++-|. .+.|+.||...+ +.+.+...++..+.
T Consensus 189 ~A~~LL~--------~~~sI~eIA~~~GF~s~S~Fsr~FKr~~G~TPs~y 230 (253)
T PRK09940 189 HAKNLIR--------VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 (253)
T ss_pred HHHHHHc--------cCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHHHH
Confidence 6665332 235888877644 66666667776654
No 13
>PF13972 TetR: Bacterial transcriptional repressor; PDB: 3RH2_A 3NNR_A.
Probab=43.98 E-value=59 Score=27.79 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=46.4
Q ss_pred chhhhhhHHHHHHHHHhhhhhhHHHhHHHHHHHHHhhhccChhhhHHHHHHHHHHHhhhhcCCCC
Q 018720 99 QREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPP 163 (351)
Q Consensus 99 ~~e~i~~y~qvf~KLiRRykYL~K~lEe~~~klL~~l~~F~~~~R~KLA~~tal~~s~k~~G~~p 163 (351)
+.|.+-.|....-.+|.||+|+-+.+-+-+.+-=.--++|-.-.+.+.+.+..++-.+.=+|.+.
T Consensus 20 ~le~~~~~l~~~f~~~w~YRF~~~dl~~Ll~~~p~L~~~~~~~~~~~~~~~~~l~~~l~~~g~l~ 84 (146)
T PF13972_consen 20 SLEDLWNYLDSVFELMWRYRFFYRDLPDLLRRDPELKKRYRQLQQRRREQLRQLLQSLIEAGILR 84 (146)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB-
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHccHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 78899999999999999999999998886655544455555555566666666554433378774
No 14
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=41.92 E-value=3.2e+02 Score=26.18 Aligned_cols=60 Identities=28% Similarity=0.359 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhhhhhhhhhhhccc---chHHHHHHHHHHHHhhcChhHHHHH
Q 018720 144 KKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKG---LVLSFITDFFKEYLVDNSLDDLIAI 204 (351)
Q Consensus 144 ~KLA~~tal~~s~k~~G~~p~~vL~~L~~dhLVkdG---~aL~F~t~~F~~~l~e~~~~~L~s~ 204 (351)
.+++.+..=.+..++....|+.++..++.. ++.+| ..++.++.....|+.+......+..
T Consensus 104 ~~i~~~i~~~~~~~l~~~~~~~~~~~~l~~-ll~~~~~~~l~~~il~~i~~~l~~~e~~~~I~~ 166 (367)
T PF04286_consen 104 EKIAEFIEKNLRKKLSEIILAPLLQKLLRS-LLEEEQHQKLLDRILEKIKEYLKSEETRERIRD 166 (367)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHH-HHhccchHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 345555555555666777777777777553 33333 4667778888888887765544433
No 15
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=41.49 E-value=59 Score=25.97 Aligned_cols=63 Identities=8% Similarity=0.054 Sum_probs=38.1
Q ss_pred hHHHHHHhhhHHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhh
Q 018720 239 PLVEYNEKKIFEVKL-KDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDA 302 (351)
Q Consensus 239 ~lve~~~kq~~~~~k-keLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~s 302 (351)
+|+++..++...... -+++..-.-.+-+..-.+++++.+.+..++.++|+..+ .-||..+|+.
T Consensus 14 ~lv~Ll~~R~~~~~~i~~~K~~~~~~v~dp~RE~~vl~~~~~~~~~~~l~~~~i-~~if~~ii~~ 77 (83)
T TIGR01797 14 KLLKLLAERRELAFEVGKSKLLSHRPVRDIERERDLLQRLITLGKAYHLDAHYI-TRLFQLIIED 77 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhhhCCCCHHHH-HHHHHHHHHH
Confidence 566666666543322 22222111122222335699999999998888876555 7779999976
No 16
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.17 E-value=3.5e+02 Score=28.30 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=26.8
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHhHHHHHHHHHhhh
Q 018720 102 AILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLE 136 (351)
Q Consensus 102 ~i~~y~qvf~KLiRRykYL~K~lEe~~~klL~~l~ 136 (351)
.+..=+..+..|+||+.-+.|.+|+-++..-++++
T Consensus 55 ~~d~~~~~id~Li~kv~~~krk~e~~iq~e~~~~~ 89 (389)
T KOG0396|consen 55 HLDSTVSLIDRLIRKVQCLKRKLEEYIQSEEEQLK 89 (389)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666778999999999999999986655544443
No 17
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=39.09 E-value=58 Score=25.88 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=38.0
Q ss_pred hHHHHHHhhhHHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhh
Q 018720 239 PLVEYNEKKIFEVKL-KDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDA 302 (351)
Q Consensus 239 ~lve~~~kq~~~~~k-keLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~s 302 (351)
+|++...++..-... -++++.-.--+.+..-.++|++.+.+...+.++|+.- +.-||..+|+.
T Consensus 14 ~lv~Ll~~R~~~~~~ia~~K~~~~~~v~d~~Re~~vl~~~~~~a~~~gl~~~~-~~~if~~ii~~ 77 (82)
T TIGR01803 14 ALVQALGRRMDYVKRASEFKRSHEAAIPAPERVAAVLPNAARWAEENGLDPPF-VEGLFAQIIHW 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHH
Confidence 566666665433222 2222221112222233679999999999998888755 47779999965
No 18
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=38.84 E-value=7.2e+02 Score=29.35 Aligned_cols=173 Identities=18% Similarity=0.284 Sum_probs=95.2
Q ss_pred HHHhHHHHHHHHHhhhccChhhhHHHHHHHHHHHhhhhcCCCCchhhhhhhhhhhhcccchHHHHHHHHHHHHhhcChhH
Q 018720 121 IKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDD 200 (351)
Q Consensus 121 ~K~lEe~~~klL~~l~~F~~~~R~KLA~~tal~~s~k~~G~~p~~vL~~L~~dhLVkdG~aL~F~t~~F~~~l~e~~~~~ 200 (351)
+..++....|+-.-++..++.+|......+.+. . .|..|..+...|.. .+- .-...|+.. ...
T Consensus 855 ~~~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~-~---~g~~~~~~~~~l~~-----~~~------~~~~~~~~~--~~~ 917 (1123)
T PRK11448 855 EHVREQLIAKLQRKLRKATDNAERSFEILAQLR-R---AGVTPEEFASRLKE-----LGP------HEAAEWLNK--HPS 917 (1123)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhcc-c---cCCCHHHHHHHHHh-----cCH------HHHHHHHhc--hHH
Confidence 444555567777777788888887766655321 0 26666666666642 111 223333333 245
Q ss_pred HHHHHHh-------ccc------ccccccc---CCCCCCCHHHHHHHHhh---cCChhHHHHHHh-hh----HHHHHHHH
Q 018720 201 LIAILKR-------GKM------EDNLLDF---FPSSKRSAEGFSEHFTK---EGLIPLVEYNEK-KI----FEVKLKDM 256 (351)
Q Consensus 201 L~s~LrK-------~gl------d~rLlef---fP~nKRs~e~f~~~F~~---~GL~~lve~~~k-q~----~~~~kkeL 256 (351)
|...|.. .+. .|.+..- |... -+++++.+-|++ +..+++.....- ++ +..-.++|
T Consensus 918 l~~~l~~~~~~~~~~~~~~i~~~~D~~~~~~~~~g~~-~~~~~y~~~f~~~i~~~~~~i~al~~~~~~p~~lt~~~l~~l 996 (1123)
T PRK11448 918 LIEQLDELKTINGLDDAPIISDHDDEVVSVERGYGDA-DKPEDYLEAFDAFVRENINQIPALQVVVNRPRDLTRKELKEL 996 (1123)
T ss_pred HHHHHHHhhccccCCCceeEecCCceeEEeeecCCCc-CCHHHHHHHHHHHHHhcccccHHHHHHHhCCccCCHHHHHHH
Confidence 5555532 111 3434433 4433 577777777764 355554443332 21 22223344
Q ss_pred HHHHHH----------HHhc--cCCH-HHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhccccCchhhh
Q 018720 257 KSTLTT----------QIAE--ETEM-SEVIESVKQRVKDAKLPDI-EVVRILWDILMDAVQWSGKNQQQ 312 (351)
Q Consensus 257 q~~L~~----------~i~~--e~~~-~eIi~~vKe~~ke~~lpe~-evv~~iW~~lM~sveWs~K~eq~ 312 (351)
...|-. ...+ +..+ .+||.+|+....-..|... |-|.--.+.++.+-+||.. |..
T Consensus 997 ~~~l~~~~~~~~~l~~a~~~~~~~~~~a~ii~~iR~~~~~~~l~~~~~~v~~a~~~~~~~~~~t~~-Q~~ 1065 (1123)
T PRK11448 997 RLLLDQQGFSEASLRSAWKETKNEDIAASIIGFIRQAALGDALVPFEERVDHAMQKIYAERDWTPV-QRK 1065 (1123)
T ss_pred HHHhhhCCCCHHHHHHHHHhchhhhHHHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHHhCCCCHH-HHH
Confidence 322221 1111 1222 3899999999887777765 5888888898888899988 443
No 19
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=37.90 E-value=2.7e+02 Score=31.54 Aligned_cols=82 Identities=11% Similarity=0.166 Sum_probs=44.9
Q ss_pred hhHHHHHHHhccccccccccCCCCCCCHHHHHHHHhhcCChhHHHHHHhhhHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Q 018720 198 LDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESV 277 (351)
Q Consensus 198 ~~~L~s~LrK~gld~rLleffP~nKRs~e~f~~~F~~~GL~~lve~~~kq~~~~~kkeLq~~L~~~i~~e~~~~eIi~~v 277 (351)
++.|.+.|++.++++ .+=++++|.+.+. ....... ..+-.++-|..++..+.++++||+
T Consensus 645 ~~El~~~Lne~~i~~--------~~l~pe~LaeLv~---------lV~~g~I--S~~~AK~VL~~m~~~~~~p~~IIe-- 703 (771)
T PRK14703 645 VNDLAGLLRDRELAA--------LPFTPAALARLVA---------LVDAGRI--STRIAKDVLAELAASGGDPEAIVE-- 703 (771)
T ss_pred HHHHHHHHhcCCCcc--------CCCCHHHHHHHHH---------HHHcCCc--cHHHHHHHHHHHHhcCCCHHHHHH--
Confidence 456777777764432 3445666655443 3332211 123334445556666777777772
Q ss_pred HHHHHhcCCCchHHHHHHHHHhhhh
Q 018720 278 KQRVKDAKLPDIEVVRILWDILMDA 302 (351)
Q Consensus 278 Ke~~ke~~lpe~evv~~iW~~lM~s 302 (351)
..-=..++|.+.+.=+.+.|++.
T Consensus 704 --e~GL~qisDe~~Le~iV~eVI~~ 726 (771)
T PRK14703 704 --AKGLEQVSDAGALEPIVEEVLAA 726 (771)
T ss_pred --hcCCcccCCHHHHHHHHHHHHHH
Confidence 22223467777777777777754
No 20
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=37.09 E-value=1.4e+02 Score=25.40 Aligned_cols=66 Identities=24% Similarity=0.340 Sum_probs=39.0
Q ss_pred chhhhhhHHHHHHHHHhhhhh----hHHHhHHHHHHHHHhhh-ccChh--hhHHHHHHHHHHHhhhhcCCCCchhhhhhh
Q 018720 99 QREAILPSVIYIQKILRRRPF----LIKNLENVTRRFMQSLE-LFEEN--ERKKLAIFTALAFSQKLSGLPPETVFQPLL 171 (351)
Q Consensus 99 ~~e~i~~y~qvf~KLiRRykY----L~K~lEe~~~klL~~l~-~F~~~--~R~KLA~~tal~~s~k~~G~~p~~vL~~L~ 171 (351)
+.|.+..-.+...+||||.+= +...-++-+ +.|..|+ .|+.+ +..|+..++|++.+ .|..|-.-|.
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~-~~Ll~L~~~f~~~~Fe~~R~~alval~v~------~P~~~~~~L~ 90 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELL-KALLHLQNKFDIENFEELRQNALVALVVA------APEKVAPYLT 90 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHH-HHHHH---TT--TTTTHHHHHHHHHHHHH------SGGGHHH-HH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH-HHHhhccccCCccCHHHHHHHHHHHHHHH------hhHHHHHHHH
Confidence 577788888899999999998 444444444 4444554 46655 47899999999988 3656655554
No 21
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=36.69 E-value=3.5e+02 Score=25.97 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=25.5
Q ss_pred ccChhhhHHHHHHHHHHHhhhhcCCCC-chhhhhhhhhh
Q 018720 137 LFEENERKKLAIFTALAFSQKLSGLPP-ETVFQPLLKDN 174 (351)
Q Consensus 137 ~F~~~~R~KLA~~tal~~s~k~~G~~p-~~vL~~L~~dh 174 (351)
+-=|..|.++|-..|-++. +-+++ .++...|.+.+
T Consensus 33 giip~~r~~~~~~~~~~v~---~~ll~~~~i~~~l~~~~ 68 (367)
T PF04286_consen 33 GIIPKNRERIAESIGEMVE---NELLTPETIRRKLESED 68 (367)
T ss_pred ccccccHHHHHHHHHHHHH---HHCCCHHHHHHHHhccc
Confidence 4457799999999999999 77774 44444455544
No 22
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=35.47 E-value=37 Score=32.86 Aligned_cols=49 Identities=24% Similarity=0.357 Sum_probs=38.2
Q ss_pred hHhhhhcCcCCCCCcCcCCC-CCCCceeecc--CcchhhhhhHHHHHHHHHhh
Q 018720 67 FEVVFTGGRTQPGTTKPDEG-ERHSYSIIDC--EPQREAILPSVIYIQKILRR 116 (351)
Q Consensus 67 FdIl~aGGlLaPGG~~~~dg-~~~~~cif~a--~~~~e~i~~y~qvf~KLiRR 116 (351)
|| ++|+|+|=|||.-+.|- ++.++.+.++ ..++|.|-..+|-+-|++--
T Consensus 182 le-~lasGillp~~~gl~DPcE~~~~~~~~~lt~qq~e~it~sAQ~~LRllaf 233 (248)
T PF07528_consen 182 LE-CLASGILLPGSPGLRDPCEKDPVDVLDTLTLQQREDITSSAQTALRLLAF 233 (248)
T ss_pred HH-HHhCceecCCCCCCcCCCCCCCceeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 44 47999999999877753 4668888885 66888999999988887743
No 23
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=30.14 E-value=30 Score=27.64 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=19.8
Q ss_pred cCcCCCCCCCceeeccCcchhhhhhHHH
Q 018720 81 TKPDEGERHSYSIIDCEPQREAILPSVI 108 (351)
Q Consensus 81 ~~~~dg~~~~~cif~a~~~~e~i~~y~q 108 (351)
|++++++..-|||+.|| |.|+|+...+
T Consensus 39 s~v~~d~~k~~Cly~Ap-~~eaV~~~~~ 65 (77)
T PF14026_consen 39 SYVSEDDGKIFCLYEAP-DEEAVREHAR 65 (77)
T ss_pred EEEecCCCeEEEEEECC-CHHHHHHHHH
Confidence 45665566799999998 5677876554
No 24
>PF08102 Antimicrobial_7: Scorpion antimicrobial peptide ; InterPro: IPR012526 This family consists of antimicrobial peptides secreted by scorpions. Novel antimicrobial peptides have been isolated from scorpions, namely the opistoporin [] and the pandinin []. These peptides form essentially helical structures and demonstrate high antimicrobial activity against Gram-negative and Gram-positive bacteria respectively.; GO: 0005576 extracellular region
Probab=29.52 E-value=58 Score=23.89 Aligned_cols=31 Identities=26% Similarity=0.466 Sum_probs=26.7
Q ss_pred HHHHhhhhc--cccCchhhhhHHHHHHHHhhhH
Q 018720 295 LWDILMDAV--QWSGKNQQQNANAALRQVSTKS 325 (351)
Q Consensus 295 iW~~lM~sv--eWs~K~eq~~~eqAlr~lk~ya 325 (351)
||+.+-+.. -||+..-++..++|+...|.|.
T Consensus 3 vwd~IK~~Akk~wnS~~~~~Lk~kalnAaknfV 35 (43)
T PF08102_consen 3 VWDWIKSTAKKAWNSDPVQQLKNKALNAAKNFV 35 (43)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 788888766 4999999999999999988875
No 25
>PLN03196 MOC1-like protein; Provisional
Probab=29.42 E-value=4.7e+02 Score=27.71 Aligned_cols=50 Identities=18% Similarity=0.408 Sum_probs=31.8
Q ss_pred eeeccCcchhhhhhHHHHHH----------HHHhhhhh-hHHHhHHHHHHHHHhhhc--cChhh
Q 018720 92 SIIDCEPQREAILPSVIYIQ----------KILRRRPF-LIKNLENVTRRFMQSLEL--FEENE 142 (351)
Q Consensus 92 cif~a~~~~e~i~~y~qvf~----------KLiRRykY-L~K~lEe~~~klL~~l~~--F~~~~ 142 (351)
.|+.+..+ ..+++-.+.|. ++|+|||= |.-.+|+.+.-.+.||+. +++.+
T Consensus 114 ~iL~~~v~-~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~ 176 (487)
T PLN03196 114 LVLGCSVK-KNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQD 176 (487)
T ss_pred HHhhcCHh-hhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHH
Confidence 44455333 34666665554 78888874 566688888888888884 44443
No 26
>PLN03025 replication factor C subunit; Provisional
Probab=28.66 E-value=5.5e+02 Score=24.89 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCch
Q 018720 254 KDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDI 289 (351)
Q Consensus 254 keLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lpe~ 289 (351)
++....|.+++.++.++.+|+..+.+......+|+.
T Consensus 241 ~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~~~~~~ 276 (319)
T PLN03025 241 DDACDGLKQLYDLGYSPTDIITTLFRVVKNYDMPEF 276 (319)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHH
Confidence 333444555555566666666555555544444443
No 27
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=27.68 E-value=1.4e+02 Score=29.29 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhcChhHHH-HHHH---------hccccccccccCCCC-CCCHHHHHHHHh------hcCChhHHHHH
Q 018720 182 LSFITDFFKEYLVDNSLDDLI-AILK---------RGKMEDNLLDFFPSS-KRSAEGFSEHFT------KEGLIPLVEYN 244 (351)
Q Consensus 182 L~F~t~~F~~~l~e~~~~~L~-s~Lr---------K~gld~rLleffP~n-KRs~e~f~~~F~------~~GL~~lve~~ 244 (351)
-.|....|..+.++++.-.-. +.+- ...+.+ |..|+|-. +|..++|.+|.+ .+||.-+.++.
T Consensus 120 ~~~av~~~~~~a~~~s~~~~~aslyt~El~apri~~~ki~g-l~~~~~~~~~a~~~yf~~h~eaD~~Ha~Ealkiv~~~~ 198 (242)
T COG5424 120 TRFAVDTWVRFATEKSWLEGAASLYTYELVAPRISVEKISG-LPYFNGFSDAAAYAYFREHLEADVRHAEEALKIVLELA 198 (242)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhhccHHHHHHccC-chhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 468889999999999854433 3333 123333 89999987 889999999998 46677777666
Q ss_pred Hh
Q 018720 245 EK 246 (351)
Q Consensus 245 ~k 246 (351)
..
T Consensus 199 ~t 200 (242)
T COG5424 199 GT 200 (242)
T ss_pred hc
Confidence 65
No 28
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=27.32 E-value=56 Score=26.03 Aligned_cols=46 Identities=17% Similarity=0.402 Sum_probs=27.4
Q ss_pred CchhhHHHHHHHhhhCCC-----CHHHHHHH-h-hcCCccchhhhhhhhHhhh
Q 018720 26 DPAAFSDAVVQIYLDNAG-----DLELIAKC-I-ESSDLNFSRYGDTFFEVVF 71 (351)
Q Consensus 26 dP~~FrDalv~~l~~~~g-----dLEavak~-L-~gs~LdyrRY~e~LFdIl~ 71 (351)
.+.+|.+||++|+..-|| .+-.+.+. | .-..++|.--+-.++.-++
T Consensus 10 ~~vsf~eAil~GlA~DGGLyvP~~iP~l~~~~l~~l~~~sy~elA~~il~~f~ 62 (79)
T PF14821_consen 10 PPVSFKEAILQGLAPDGGLYVPEEIPKLSKEELEELKNLSYAELAFEILSPFL 62 (79)
T ss_dssp CEE-HHHHHHH-SBTTSB-EEESS-----HHHHHHHTTS-HHHHHHHHHHHHC
T ss_pred CCcCHHHHHHhCCCCCCeeEecCcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 789999999999987776 55555544 4 3466777766666666665
No 29
>smart00830 CM_2 Chorismate mutase type II. Chorismate mutase, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine PUBMED:9642265, PUBMED:9497350.
Probab=27.26 E-value=1.2e+02 Score=23.16 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhh
Q 018720 270 MSEVIESVKQRVKDAKLPDIEVVRILWDILMDA 302 (351)
Q Consensus 270 ~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~s 302 (351)
..+|+..+++...+..+|+ +.+.-||..+|++
T Consensus 42 e~~vl~~~~~~a~~~~l~~-~~~~~if~~ii~~ 73 (79)
T smart00830 42 EAEVLERLRALAEGPGLDP-ELVERIFREIIEA 73 (79)
T ss_pred HHHHHHHHHHHcccCCcCH-HHHHHHHHHHHHH
Confidence 5688999999999888854 5568889999975
No 30
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=26.97 E-value=1.6e+02 Score=28.10 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC----chHHHHHHHHHhhhhccccCchhhhhHHHHHHHHhhhHHHhHH
Q 018720 255 DMKSTLTTQIAEETEMSEVIESVKQRVKDAKLP----DIEVVRILWDILMDAVQWSGKNQQQNANAALRQVSTKSVLCLC 330 (351)
Q Consensus 255 eLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lp----e~evv~~iW~~lM~sveWs~K~eq~~~eqAlr~lk~yapLL~a 330 (351)
++-+.|.+++....|.+||.+.+++......-+ +.-++.++++|+... ++| ..+ -++.-|.+|.+.|..
T Consensus 12 ~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~---GSk---S~S-H~~~~lery~~~Lk~ 84 (253)
T PF09090_consen 12 ALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHI---GSK---SFS-HVLSALERYKEVLKE 84 (253)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHH---TTT---SHH-HHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHh---cCc---hHH-HHHHHHHHHHHHHHH
Confidence 345677888888888888877766554433322 345899999999977 344 233 678899999999999
Q ss_pred H
Q 018720 331 A 331 (351)
Q Consensus 331 f 331 (351)
+
T Consensus 85 l 85 (253)
T PF09090_consen 85 L 85 (253)
T ss_dssp H
T ss_pred h
Confidence 9
No 31
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=26.61 E-value=3.5e+02 Score=22.02 Aligned_cols=74 Identities=16% Similarity=0.309 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHh-----cCCCchHHHHHH-------HHHhhhhccccCchhhhhHHHH
Q 018720 251 VKLKDMKSTLTTQI-AEETEMSEVIESVKQRVKD-----AKLPDIEVVRIL-------WDILMDAVQWSGKNQQQNANAA 317 (351)
Q Consensus 251 ~~kkeLq~~L~~~i-~~e~~~~eIi~~vKe~~ke-----~~lpe~evv~~i-------W~~lM~sveWs~K~eq~~~eqA 317 (351)
.....|..++...- .++.++.+-+..++....+ .+++|.++|..| |..+..++.=++......-+..
T Consensus 23 ~~~~~L~~~l~~~k~~~~~sv~~y~~~~~~i~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~~~~~~i~~~~~~~~~t~~el 102 (119)
T PF14223_consen 23 ARVQQLKSQLENLKMKDGESVDEYISRLKEIVDELRAIGKPISDEDLVSKILRSLPPSYDTFVTAIRNSKDLPKMTLEEL 102 (119)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHhhhhhhhcCCcccchhHHHHHHhcCCchhHHHHHHHHhcCCCCcCCHHHH
Confidence 55667777777766 6778888777766665443 469999999887 5555555443333122344455
Q ss_pred HHHHhhh
Q 018720 318 LRQVSTK 324 (351)
Q Consensus 318 lr~lk~y 324 (351)
+.+|..+
T Consensus 103 ~~~L~~~ 109 (119)
T PF14223_consen 103 ISRLLAE 109 (119)
T ss_pred HHHHHHH
Confidence 5555544
No 32
>PRK14136 recX recombination regulator RecX; Provisional
Probab=26.26 E-value=6.2e+02 Score=25.74 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=54.2
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHhHHHHHHHHHhhhccChhhhHHHHHHHHHHHhhhhcCCCCchhhhhhhhhhhhcccch
Q 018720 102 AILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLV 181 (351)
Q Consensus 102 ~i~~y~qvf~KLiRRykYL~K~lEe~~~klL~~l~~F~~~~R~KLA~~tal~~s~k~~G~~p~~vL~~L~~dhLVkdG~a 181 (351)
.+++-..+.++.++---|=+..--|...||... +|+++.- ..||.-|...+++.|-
T Consensus 157 ~~~~~~~lk~kAL~lLSrReRSe~ELr~KL~kk--G~~ee~I--------------------E~VIerLke~gYLDDe-- 212 (309)
T PRK14136 157 SSRPARSLKGRALGYLSRREYSRAELARKLAPY--ADESDSV--------------------EPLLDALEREGWLSDA-- 212 (309)
T ss_pred ccccHHHHHHHHHHHhhcccccHHHHHHHHHHc--CCCHHHH--------------------HHHHHHHHHcCCcCHH--
Confidence 567777777777765555555555555565542 5655421 2344555666666653
Q ss_pred HHHHHHHHHHHHhhcChhHHHHHHHhccccccccc
Q 018720 182 LSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLD 216 (351)
Q Consensus 182 L~F~t~~F~~~l~e~~~~~L~s~LrK~gld~rLle 216 (351)
.|+-.+.+.....+|...+..-|++-||++-+++
T Consensus 213 -RFAesyVr~R~~kkGp~rIrqELrQKGId~eLIE 246 (309)
T PRK14136 213 -RFAESLVHRRASRVGSARIVSELKRHAVGDALVE 246 (309)
T ss_pred -HHHHHHHHHHhhchhHHHHHHHHHHcCCCHHHHH
Confidence 3333344555555678888888888888765544
No 33
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=26.16 E-value=3.8e+02 Score=22.53 Aligned_cols=49 Identities=27% Similarity=0.322 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcChhHHHHHHHhccccccccccCCCCCCCHHHHHHHHhhcC-ChhHHHHHHhh
Q 018720 186 TDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEG-LIPLVEYNEKK 247 (351)
Q Consensus 186 t~~F~~~l~e~~~~~L~s~LrK~gld~rLleffP~nKRs~e~f~~~F~~~G-L~~lve~~~kq 247 (351)
|.+|+.|+.- ..+.+.+.||- | |-=+.+.-++.+++.| ..+++++|..+
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~-----------~-N~C~~~~~e~~L~~~~~~~eL~~lY~~k 52 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRL-----------P-NYCDLEEVEEVLKEHGKYQELVDLYQGK 52 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHcc-----------C-CcCCHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 7899999999 56777777762 3 4446777777888754 58999999876
No 34
>PRK10167 hypothetical protein; Provisional
Probab=25.94 E-value=2.6e+02 Score=25.80 Aligned_cols=82 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHhhhhhhHHHhHHHHHHHHHhhhcc-ChhhhHHHHHHHHHHHhhhhcCCCCchhhhhhhhhhhhccc
Q 018720 101 EAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELF-EENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKG 179 (351)
Q Consensus 101 e~i~~y~qvf~KLiRRykYL~K~lEe~~~klL~~l~~F-~~~~R~KLA~~tal~~s~k~~G~~p~~vL~~L~~dhLVkdG 179 (351)
+-+..|.+.|.+.+.+.+ =.+..=|++..+..|+|.. +.+||.-+.-...-+-- |.+|-.+.-.|++.++-+-+
T Consensus 70 ~~~~~Y~~~lm~al~~~~-t~~~~~NvL~Hi~GYFKk~Ls~~EKq~l~~lI~~Yr~----g~vpl~vpltlL~h~~~~y~ 144 (169)
T PRK10167 70 DFYNQYRQRVIVLLSHPA-NVRDHTNVLMHVQGYFRPHIDSTERQQLAALIDSYRR----GEQPLLAPLMRIKHYMALYP 144 (169)
T ss_pred HHHHHHHHHHHHHHcCCC-CcchhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHCC
Q ss_pred chHHHHHHHHHHHHhhcC
Q 018720 180 LVLSFITDFFKEYLVDNS 197 (351)
Q Consensus 180 ~aL~F~t~~F~~~l~e~~ 197 (351)
..||.++.
T Consensus 145 ----------~~YL~~Q~ 152 (169)
T PRK10167 145 ----------DAWLSGQR 152 (169)
T ss_pred ----------cHHHHhCc
No 35
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=25.80 E-value=2.4e+02 Score=24.43 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=46.5
Q ss_pred hhHHHHHHHhccccccccccCCCCCCCHHHHHHHHhhcCChhHHHHHHhhhHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Q 018720 198 LDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESV 277 (351)
Q Consensus 198 ~~~L~s~LrK~gld~rLleffP~nKRs~e~f~~~F~~~GL~~lve~~~kq~~~~~kkeLq~~L~~~i~~e~~~~eIi~~v 277 (351)
++.+...|++.|++- ....=++++|.+. ++...+.. -..+..++-|..+++++.++.++|+.
T Consensus 21 ~~el~~~l~~~~~~~------~~~~i~~~~l~~l---------i~l~~~~~--Is~~~ak~ll~~~~~~~~~~~~ii~~- 82 (148)
T PF02637_consen 21 LNELLGLLNKKGLDI------EDSPISPEHLAEL---------INLLEDGK--ISKKSAKELLRELLENGKSPEEIIEE- 82 (148)
T ss_dssp HTHHHHHHHHHT--T------TTSSSTHHHHHHH---------HHHHHTTS--SGHHHHHHHHHHHHHHTS-HHHHHHH-
T ss_pred HHHHHHHHHHCCCCh------hhcCCCHHHHHHH---------HHHHHcCC--CCHHHHHHHHHHHHHcCCCHHHHHHH-
Confidence 677899999999852 1123366776554 44433332 22334455566677778999888843
Q ss_pred HHHHHhcCCCchHHHHHHHHHhhhh
Q 018720 278 KQRVKDAKLPDIEVVRILWDILMDA 302 (351)
Q Consensus 278 Ke~~ke~~lpe~evv~~iW~~lM~s 302 (351)
..=..++|.+.+.-+...+++.
T Consensus 83 ---~~l~~i~d~~el~~~v~~vi~~ 104 (148)
T PF02637_consen 83 ---NGLWQISDEEELEALVEEVIAE 104 (148)
T ss_dssp ---TT---B--CCHHHHHHHHHHHC
T ss_pred ---cCCCcCCCHHHHHHHHHHHHHH
Confidence 2224466767777777777764
No 36
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=25.69 E-value=89 Score=32.27 Aligned_cols=270 Identities=14% Similarity=0.115 Sum_probs=158.3
Q ss_pred CCCCCCCCCccccccccccccCCCCchhhHHHHHHHhhhCC----CCHHHHHHHhhcCCccchhhhhhhhHhhhhcCcCC
Q 018720 2 SSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNA----GDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQ 77 (351)
Q Consensus 2 ~~~~kP~L~G~RiKTRKRd~k~k~dP~~FrDalv~~l~~~~----gdLEavak~L~gs~LdyrRY~e~LFdIl~aGGlLa 77 (351)
++...|...+.+-|++.|+...|.++.-+-+++++...... --+|..-. +++-.+|.+|-..++.|.-.++...
T Consensus 6 ~kp~lsg~riktrKr~~~e~~dp~~f~da~vq~~~~~~gdle~vak~ldssg~--~l~~~rYgd~~fdil~~gg~~~pg~ 83 (412)
T KOG2297|consen 6 EKPVLSGQRIKTRKRDEAEKLDPTAFRDAVVQGLEDNAGDLELVAKSLDSSGN--DLDYRRYGDILFDILFAGGRLQPGG 83 (412)
T ss_pred cCCCCCCccchhhhccccccCCCccHHHHHHHHHHhcCccHHHHHHHHHhccc--cccHHHHHHHHHHHHHHhcccCCCC
Confidence 57788999999999999999999999999999988743322 22222222 2345789999999999988777777
Q ss_pred CCCcC---------cCCCCC-----CCceeeccCcchhhhhhHH---HHHHHHHhhhhhhHHHhHH-HHHHHH-----Hh
Q 018720 78 PGTTK---------PDEGER-----HSYSIIDCEPQREAILPSV---IYIQKILRRRPFLIKNLEN-VTRRFM-----QS 134 (351)
Q Consensus 78 PGG~~---------~~dg~~-----~~~cif~a~~~~e~i~~y~---qvf~KLiRRykYL~K~lEe-~~~klL-----~~ 134 (351)
+++.- .+..+. +..-||+- -||.|- .-|..-+||.----|.|+| |-+|+- .+
T Consensus 84 ~~sddge~~t~~cvfda~e~~E~i~~~~qvf~K-----liRRykyLeK~fE~e~~k~Llflk~F~e~Er~KLA~~Tal~l 158 (412)
T KOG2297|consen 84 VKSDDGERHTSYCVFDAEEKREAIRNSVQVFQK-----LIRRYKYLEKNFENEMRKFLLFLKLFEENERKKLAMLTALLL 158 (412)
T ss_pred ccccccCccCceeEeecCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 76432 222121 13344442 455553 3677788888888899999 566653 33
Q ss_pred hhccChhhhHHHHHHHHHHHhhhhcCCCCchhhhhhhhhhhhcccch---------------HHHH------HHHHHHHH
Q 018720 135 LELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLV---------------LSFI------TDFFKEYL 193 (351)
Q Consensus 135 l~~F~~~~R~KLA~~tal~~s~k~~G~~p~~vL~~L~~dhLVkdG~a---------------L~F~------t~~F~~~l 193 (351)
-+| ++++-.=.....--++. .|. ..+-..-|+++.++.+|+. ++|. ++-|..|.
T Consensus 159 ~nG-t~~~tvl~~L~~d~LVk---eGi-~l~F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmeffPpnkrs~E~Fak~F 233 (412)
T KOG2297|consen 159 SNG-TLPATVLQSLLNDNLVK---EGI-ALSFAVKLFKEWLVEKDINDLISSLRKGKMDDRLMEFFPPNKRSVEHFAKYF 233 (412)
T ss_pred hCC-CCCHHHHHHHHHhhHHH---HhH-HHHHHHHHHHHHHhhccHHHHHHHHHhcChHhHHHHhcCCcchhHHHHHHHH
Confidence 444 33332222222222233 332 2333344677777777653 3332 56788888
Q ss_pred hhcChhHHHHHHHhcccc-----------ccccccCCCCCCCHHHHHHHHhhcCChh-------------HHHHHHhhhH
Q 018720 194 VDNSLDDLIAILKRGKME-----------DNLLDFFPSSKRSAEGFSEHFTKEGLIP-------------LVEYNEKKIF 249 (351)
Q Consensus 194 ~e~~~~~L~s~LrK~gld-----------~rLleffP~nKRs~e~f~~~F~~~GL~~-------------lve~~~kq~~ 249 (351)
.+.|+..|+...|+---. +++-+=.|. +--.++-.+..+.++|++ .|+|+++++.
T Consensus 234 t~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~-~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeel 312 (412)
T KOG2297|consen 234 TDAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPV-KEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEEL 312 (412)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHH
Confidence 888888888877653221 222222221 112234444455566654 5789855432
Q ss_pred --HHHHHHHHH---HHHHHHhccCCHHHHHHHHHHHHHhc
Q 018720 250 --EVKLKDMKS---TLTTQIAEETEMSEVIESVKQRVKDA 284 (351)
Q Consensus 250 --~~~kkeLq~---~L~~~i~~e~~~~eIi~~vKe~~ke~ 284 (351)
..+.+.|++ .|..-.+.+.+.-+.+--|++++=++
T Consensus 313 va~qalrhlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen 352 (412)
T KOG2297|consen 313 VAEQALRHLKQYAPLLAAFCSQGQSELELLLKVQEYCYEN 352 (412)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence 223344443 35555555555556666666665554
No 37
>PRK06285 chorismate mutase; Provisional
Probab=25.58 E-value=1.4e+02 Score=24.56 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhh
Q 018720 270 MSEVIESVKQRVKDAKLPDIEVVRILWDILMDA 302 (351)
Q Consensus 270 ~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~s 302 (351)
.++|++.+.+...+.++++.. |.-||..+|+.
T Consensus 54 E~~vl~~~~~~a~~~~l~~~~-i~~if~~Ii~~ 85 (96)
T PRK06285 54 EDYIHEKIRKLCEEHNIDENI-GLKIMKILMEH 85 (96)
T ss_pred HHHHHHHHHHHhhhCCCCHHH-HHHHHHHHHHH
Confidence 568999999999888887765 57779999975
No 38
>PF12085 DUF3562: Protein of unknown function (DUF3562); InterPro: IPR021945 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.
Probab=25.57 E-value=1.6e+02 Score=23.56 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHhhhhccccCchhhhhHHHHHHHHhhhHHHhHH
Q 018720 273 VIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVSTKSVLCLC 330 (351)
Q Consensus 273 Ii~~vKe~~ke~~lpe~evv~~iW~~lM~sveWs~K~eq~~~eqAlr~lk~yapLL~a 330 (351)
+-+.|++...+..+|+.+|-.+.|+++-.- .=..+ |..|-|||++
T Consensus 6 ~~e~i~~iA~~t~~P~e~V~~my~dt~~~l-~~~AR------------V~DYl~lfaa 50 (66)
T PF12085_consen 6 VDEVIRSIAEETGTPAETVRRMYDDTMREL-SSGAR------------VHDYLPLFAA 50 (66)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HcCCc------------hhhhHHHHHH
Confidence 334567888999999999999999987654 22334 6667777765
No 39
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=25.04 E-value=6.2e+02 Score=25.85 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhhccccCchhhhhHHHHHHHHhh
Q 018720 290 EVVRILWDILMDAVQWSGKNQQQNANAALRQVST 323 (351)
Q Consensus 290 evv~~iW~~lM~sveWs~K~eq~~~eqAlr~lk~ 323 (351)
+.|..+|+-+++. .=..+ .+.+..+|++.|..
T Consensus 137 ~fv~~vw~lL~~~-~~~~~-~D~lv~~al~FL~~ 168 (370)
T PF08506_consen 137 TFVQAVWNLLTKI-SQQPK-YDILVSKALQFLSS 168 (370)
T ss_dssp HHHHHHHHHHTC---SSGG-GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hhccc-ccHHHHHHHHHHHH
Confidence 4688999999884 33566 45555599988765
No 40
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=24.96 E-value=1e+02 Score=22.86 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=24.8
Q ss_pred HHHHHHHHhhcCChhHHHHHHhhhHHHHHHHH
Q 018720 225 AEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDM 256 (351)
Q Consensus 225 ~e~f~~~F~~~GL~~lve~~~kq~~~~~kkeL 256 (351)
...|++||+++-|++++.||..-..+...+.-
T Consensus 10 ~~~y~~~ft~~El~~i~~FY~Sp~Gqk~~~~~ 41 (64)
T PF09832_consen 10 APIYAEHFTEEELDAILAFYESPLGQKIVAKE 41 (64)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHCCHHhHHHHHHh
Confidence 46789999999999999999988666555443
No 41
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=23.90 E-value=1.5e+02 Score=23.58 Aligned_cols=32 Identities=6% Similarity=0.111 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhh
Q 018720 270 MSEVIESVKQRVKDAKLPDIEVVRILWDILMDA 302 (351)
Q Consensus 270 ~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~s 302 (351)
..+|++.+.+...+.++++..+ .-||..+|+.
T Consensus 46 E~~vl~~~~~~a~~~gl~~~~i-~~if~~i~~~ 77 (83)
T TIGR01799 46 EAAMLAARREEAEKAGIAPDLI-EDVLRRFMRE 77 (83)
T ss_pred HHHHHHHHHHHhhcCCCCHHHH-HHHHHHHHHH
Confidence 5689999999998888876554 6689999975
No 42
>PHA02690 hypothetical protein; Provisional
Probab=23.78 E-value=76 Score=26.44 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=27.3
Q ss_pred CCHHHHHHHhhcCCccchhhhhhhhHhhhh
Q 018720 43 GDLELIAKCIESSDLNFSRYGDTFFEVVFT 72 (351)
Q Consensus 43 gdLEavak~L~gs~LdyrRY~e~LFdIl~a 72 (351)
+=|||+-..|+||+.--|+----|||.+++
T Consensus 22 rYLeAIqrhlEgs~plLR~~~RlLfDL~lT 51 (90)
T PHA02690 22 RYLEAIQRHLEGSTPLLRQMWRLLFDLLLT 51 (90)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999998875
No 43
>TIGR02568 LcrE type III secretion regulator YopN/LcrE/InvE/MxiC. This protein is found in type III secretion operons and, in Yersinia is localized to the cell surface and is involved in the Low-Calicium Response (LCR), possibly by sensing the calcium concentration. In Salmonella, the gene is known as InvE and is believed to perform an essential role in the secretion process and interacts with the proteins SipBCD and SicA.//Altered name to reflect regulatory role. Added GO and role IDs. Negative regulation of type III secretion in Y pestis is mediated in part by a multiprotein complex that has been proposed to act as a physical impediment to type III secretion by blocking the entrance to the secretion apparatus prior to contact with mammalian cells. This complex is composed of YopN, its heterodimeric secretion chaperone SycN-YscB, and TyeA. PubMed: 15701523
Probab=23.29 E-value=4.4e+02 Score=25.06 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=77.3
Q ss_pred HHHHHHhhhhhhHHHhHHHHHHHHHhhhccChhhhHHHHHHHHHH---HhhhhcCCCCchhhhhhhhhhhhcccchHHHH
Q 018720 109 YIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALA---FSQKLSGLPPETVFQPLLKDNLVGKGLVLSFI 185 (351)
Q Consensus 109 vf~KLiRRykYL~K~lEe~~~klL~~l~~F~~~~R~KLA~~tal~---~s~k~~G~~p~~vL~~L~~dhLVkdG~aL~F~ 185 (351)
++.-++++.+ +....-+.+..+++-+......+..+.++.+|+. ++. +|...+.-|..|+.+.+.-++- +
T Consensus 98 aL~~ll~~~~-~~~~~~~~l~~~~~~ll~~~~~~~i~agin~al~a~~f~~--~~~~~~~~LR~lYr~~v~~~~~----~ 170 (240)
T TIGR02568 98 ALRAALQRLE-LDPAERKALEEAAQALLELEDGPTIRAGINTALAAAAFAD--QGDLKAAALRDLYRQAVSDQSS----L 170 (240)
T ss_pred HHHHHHHhcc-CChhHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHH--hhcccHHHHHHHHHHHHcCCcc----H
Confidence 4445555444 4433334455566667777888889999999874 663 2444568899999999985444 5
Q ss_pred HHHHHHHHhhcChhH---HHHHHHhccccccccccCCCCCCCHHHHHHHHh
Q 018720 186 TDFFKEYLVDNSLDD---LIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFT 233 (351)
Q Consensus 186 t~~F~~~l~e~~~~~---L~s~LrK~gld~rLleffP~nKRs~e~f~~~F~ 233 (351)
+.+|..|+.+-+-++ .+..|.++=..| |-.- +|+. +...|...+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~fL~rALa~D-L~s~-~ps~-~~~~L~~l~~ 218 (240)
T TIGR02568 171 VQLLSDLIERYGAQRFDIVLDFLIRALAAD-LSAQ-GPST-DSAQLQVLMS 218 (240)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHhc-CCCC-CHHHHHHHHH
Confidence 677888888777665 888888887666 5444 5555 5666666654
No 44
>PRK06034 hypothetical protein; Provisional
Probab=22.46 E-value=1.7e+02 Score=29.19 Aligned_cols=81 Identities=12% Similarity=0.178 Sum_probs=48.2
Q ss_pred CCCCCCHHHHHHHHhhcCChhHHHHHHhhhHHHHH-HHHHHHHH-HHHhccCCHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 018720 219 PSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKL-KDMKSTLT-TQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILW 296 (351)
Q Consensus 219 P~nKRs~e~f~~~F~~~GL~~lve~~~kq~~~~~k-keLq~~L~-~~i~~e~~~~eIi~~vKe~~ke~~lpe~evv~~iW 296 (351)
|+++.+.+.++....+-+ .+|+++..+|.....+ -++++.-. .-+-+-.-..+|++.+.+.. +.++| .+.|.-||
T Consensus 5 p~~~~~L~eLR~eID~ID-~eLl~LL~eR~~lv~~Va~~K~~~~~~pv~dP~RE~evl~rl~~~~-~g~L~-~~~ie~If 81 (279)
T PRK06034 5 PPAPPSLAELRWEIDAID-EELHQLLMERGDIIDRLIAVKRTQEVGSAFRPGREADMMRRLVSRH-RGILP-LDTVESIW 81 (279)
T ss_pred ccccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCCCCccChHHHHHHHHHHHHhc-cCCCC-HHHHHHHH
Confidence 667777777777666544 5777777777544332 22222100 01111122557888875543 45666 56778999
Q ss_pred HHhhhh
Q 018720 297 DILMDA 302 (351)
Q Consensus 297 ~~lM~s 302 (351)
..||++
T Consensus 82 r~Iis~ 87 (279)
T PRK06034 82 RVIIAT 87 (279)
T ss_pred HHHHHH
Confidence 999987
No 45
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=22.38 E-value=4.6e+02 Score=23.47 Aligned_cols=103 Identities=11% Similarity=0.103 Sum_probs=69.8
Q ss_pred hhhHHHHHHHhhhCCCCHHHHHHHh-hcCCc-cchhhhhhhhHhhh---------------hcCcCCCCCcCcCCCCCCC
Q 018720 28 AAFSDAVVQIYLDNAGDLELIAKCI-ESSDL-NFSRYGDTFFEVVF---------------TGGRTQPGTTKPDEGERHS 90 (351)
Q Consensus 28 ~~FrDalv~~l~~~~gdLEavak~L-~gs~L-dyrRY~e~LFdIl~---------------aGGlLaPGG~~~~dg~~~~ 90 (351)
-.|+..|.+.+--+.|-+.++-.|| .+-.. .+..+.|.|-||-. =|| .|+|. +- ..+
T Consensus 19 p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~--~~~g~-pw---~~~ 92 (156)
T cd01051 19 PRFAKLLQEQLGGAFGELSAAMQYLFQSFNFREDPKYRDLLLDIGTEELSHLEMVATLIAMLLK--DSQGV-PW---TAA 92 (156)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCC-cC---CCc
Confidence 3688889888866668999999999 44444 88999999998743 133 45553 21 233
Q ss_pred ceeeccCcchhhhhhHHHHHHHHHhhhhhhHHHhHH-HHHHHHHhhhc
Q 018720 91 YSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLEN-VTRRFMQSLEL 137 (351)
Q Consensus 91 ~cif~a~~~~e~i~~y~qvf~KLiRRykYL~K~lEe-~~~klL~~l~~ 137 (351)
| |-.+.+-.+.++.=+.-=++-+.+|..+.+..+| .++.+|.+|-.
T Consensus 93 y-v~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~Dp~v~~~l~~I~~ 139 (156)
T cd01051 93 Y-IQSSGNLVADLRSNIAAESRARLTYERLYEMTDDPGVKDTLSFLLV 139 (156)
T ss_pred c-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 2223333344554445556778888888888888 58889888755
No 46
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=21.69 E-value=2.3e+02 Score=18.79 Aligned_cols=29 Identities=7% Similarity=0.134 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 018720 253 LKDMKSTLTTQIAEETEMSEVIESVKQRV 281 (351)
Q Consensus 253 kkeLq~~L~~~i~~e~~~~eIi~~vKe~~ 281 (351)
-+.+.+.+.+++.++.+.++|+.++.+.-
T Consensus 7 C~~~v~~i~~~l~~~~t~~~I~~~l~~~C 35 (39)
T PF05184_consen 7 CKFVVKEIEKLLKNNKTEEEIKKALEKAC 35 (39)
T ss_dssp HHHHHHHHHHHHHSTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 46677888999999999999999988764
No 47
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=21.67 E-value=1.4e+02 Score=26.51 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 018720 251 VKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDA 284 (351)
Q Consensus 251 ~~kkeLq~~L~~~i~~e~~~~eIi~~vKe~~ke~ 284 (351)
..=+++...+.+++.+|.+-+||+++..+.=-+.
T Consensus 57 ~iA~dmR~~Vr~~i~~G~Sd~eI~~~~v~RYG~~ 90 (126)
T TIGR03147 57 PIAYDLRHEVYSMVNEGKSNQQIIDFMTARFGDF 90 (126)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCe
Confidence 3447888999999999999999998887765544
No 48
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=21.40 E-value=1.3e+02 Score=32.34 Aligned_cols=95 Identities=16% Similarity=0.295 Sum_probs=68.8
Q ss_pred HHHHHhhcChhHHHHHHHhccccccccccCCCCCCCHHHHHHHHhhcCChhHHHHHHhhhH-HHHHHHHHH---------
Q 018720 189 FKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIF-EVKLKDMKS--------- 258 (351)
Q Consensus 189 F~~~l~e~~~~~L~s~LrK~gld~rLleffP~nKRs~e~f~~~F~~~GL~~lve~~~kq~~-~~~kkeLq~--------- 258 (351)
.+.|+.+-|-.-|...|.+++ +++..|.+.| +++++|.....+ ..+..||..
T Consensus 315 ~r~~~~~~Gr~~l~~ll~~a~-------------~~p~~f~~~y-----e~m~~f~~~~~~~~~~~~EL~~rgV~~~~fy 376 (514)
T PF10265_consen 315 NRVWLADVGRQILSDLLVKAD-------------KDPKDFLEAY-----EEMMEFLQDPENWDTMEEELESRGVKCMNFY 376 (514)
T ss_pred hhhhHHHhhHHHHHHHHHHcC-------------CCcHHHHHHH-----HHHHHHHcCcccHHHHHHHHhhCCceeeeHH
Confidence 467888888888888888887 4566777777 457777765544 444455543
Q ss_pred ------HHHHHHhcc-CCHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhh
Q 018720 259 ------TLTTQIAEE-TEMSEVIESVKQRVKDAKLPDIEVVRILWDILMD 301 (351)
Q Consensus 259 ------~L~~~i~~e-~~~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~ 301 (351)
-|-|.+++= .|+.-|.+-|+..=-.+++.|.-+-.-||+.+..
T Consensus 377 DvvlDfillDaFedL~~PPssv~aV~~Nrwls~sfKetal~ta~Wsvlka 426 (514)
T PF10265_consen 377 DVVLDFILLDAFEDLENPPSSVLAVVQNRWLSDSFKETALATAVWSVLKA 426 (514)
T ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHcchhhhhhhhhccCCcchhhhHH
Confidence 244555553 7899999999998888899999999999998853
No 49
>PF01817 CM_2: Chorismate mutase type II; InterPro: IPR020822 Chorismate mutase, 5.4.99.5 from EC, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine [, ]. Prephenate dehydratase (IPR001086 from INTERPRO, 4.2.1.51 from EC, PDT) catalyses the decarboxylation of prephenate into phenylpyruvate. In microorganisms PDT is involved in the terminal pathway of the biosynthesis of phenylalanine. In some bacteria, such as Escherichia coli, PDT is part of a bifunctional enzyme (P-protein) that also catalyzes the transformation of chorismate into prephenate (chorismate mutase) while in other bacteria it is a monofunctional enzyme. The sequence of monofunctional chorismate mutase aligns well with the N-terminal part of P-proteins [].; GO: 0046417 chorismate metabolic process; PDB: 1YBZ_A 2GTV_X 2FP1_B 2F6L_B 2FP2_B 2AO2_A 3HGW_C 3HGX_B 2H9C_A 3RET_B ....
Probab=21.15 E-value=1.3e+02 Score=23.27 Aligned_cols=32 Identities=16% Similarity=0.413 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhh
Q 018720 270 MSEVIESVKQRVKDAKLPDIEVVRILWDILMDA 302 (351)
Q Consensus 270 ~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~s 302 (351)
.++|++.+.+..++.+++. +.+.-||..+|+.
T Consensus 42 E~~v~~~~~~~~~~~~l~~-~~i~~if~~ii~~ 73 (81)
T PF01817_consen 42 EEEVLERLRELAEEGGLDP-EFIERIFRAIIEE 73 (81)
T ss_dssp HHHHHHHHHHHHHHTTSEH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhCCCCH-HHHHHHHHHHHHH
Confidence 5689999999999999875 4566679999865
No 50
>PRK08311 putative RNA polymerase sigma factor SigI; Reviewed
Probab=21.07 E-value=6e+02 Score=24.24 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=42.6
Q ss_pred HHHHHhhcChhHHHHHHHhccccccccccCCCCCCCHHHHHHHHhhcCChhHHHHHHhhhHHHHHHHHHHHHHHHHhccC
Q 018720 189 FKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEET 268 (351)
Q Consensus 189 F~~~l~e~~~~~L~s~LrK~gld~rLleffP~nKRs~e~f~~~F~~~GL~~lve~~~kq~~~~~kkeLq~~L~~~i~~e~ 268 (351)
|.+|+.----+.++..+|+.......+.| |+.--.++ -.-+.+ ..+.+|+..+.....+.|+...-.+.-+=+.
T Consensus 73 F~awl~~Iirn~~iDylRk~~~~~~~~~~-~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~ei~~~~~~L~~~gi 146 (237)
T PRK08311 73 FLSFAELVIKRRLIDYFRKESKHNLVLSN-SDEEDEEE----NDIEIE-LSLEEYQEEEENEERREEIEEFKKELKEFGI 146 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCC-Cccccchh----hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67777777788899999998765444333 22211111 122211 2234677766666666666554444333344
Q ss_pred CHHHHH
Q 018720 269 EMSEVI 274 (351)
Q Consensus 269 ~~~eIi 274 (351)
+.+|++
T Consensus 147 ~~~dL~ 152 (237)
T PRK08311 147 TFEDLV 152 (237)
T ss_pred cHHHHh
Confidence 444444
No 51
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.07 E-value=1.2e+02 Score=32.34 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=66.5
Q ss_pred hhhhHhhhhcCcCCCCCcCcCCCCCCCceeecc-Ccchh-hhhhHHHHHHHHHhhhhhhHHHhHHHHHHHHHhhhccChh
Q 018720 64 DTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDC-EPQRE-AILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEEN 141 (351)
Q Consensus 64 e~LFdIl~aGGlLaPGG~~~~dg~~~~~cif~a-~~~~e-~i~~y~qvf~KLiRRykYL~K~lEe~~~klL~~l~~F~~~ 141 (351)
-.||||.++||+.+- +|-+-+||+=-+ ..++| +|..| |...+|+=.|- | ..+..
T Consensus 154 rlL~e~~~a~G~~a~------EGG~ISYnlPYsK~vpLe~si~~W-qyvdRL~g~y~-------e--~gv~I-------- 209 (480)
T TIGR01503 154 RLLAEIILAGGFTSF------EGGGISYNIPYAKNVTLEKSLEDW-QYCDRLVGFYE-------E--QGVHI-------- 209 (480)
T ss_pred HHHHHHHHHcCCCcc------CCCcceeccccCCCCCHHHHHHHH-HHHHHHHHHHH-------h--cCcee--------
Confidence 469999999999853 333455666444 33444 33333 33344432221 1 11111
Q ss_pred hhHHHHHHHHHHHhhhhcCCCCchhhhhh---------------------hhhhhhcccchHHHHHHHHHHHHhhcChhH
Q 018720 142 ERKKLAIFTALAFSQKLSGLPPETVFQPL---------------------LKDNLVGKGLVLSFITDFFKEYLVDNSLDD 200 (351)
Q Consensus 142 ~R~KLA~~tal~~s~k~~G~~p~~vL~~L---------------------~~dhLVkdG~aL~F~t~~F~~~l~e~~~~~ 200 (351)
.|+-.. ++. ..++||++..++ ..-|++-|=.++.-+-++.+.||.+-|-++
T Consensus 210 nrE~FG-----pLt---gtLvPPsisiav~ilE~Lla~eqGVksisvgy~Q~Gn~~QDiaai~aL~~l~~eYl~~~g~~D 281 (480)
T TIGR01503 210 NREPFG-----PLT---GTLVPPSISNAIGIIEGLLAAEQGVKNITVGYGQVGNLTQDIAALRALEEQTNEYLKAYGYND 281 (480)
T ss_pred cccccc-----CCC---CCccChHHHHHHHHHHHHHHHHcCCeEEEeccccCCChHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 233222 223 466688877663 234566666788889999999988776533
Q ss_pred HHHHHHhccccccccccCCCCCC
Q 018720 201 LIAILKRGKMEDNLLDFFPSSKR 223 (351)
Q Consensus 201 L~s~LrK~gld~rLleffP~nKR 223 (351)
+. =.-+=..-|.-||...-
T Consensus 282 v~----i~tV~hqwMG~FP~d~~ 300 (480)
T TIGR01503 282 VF----VTTVFHQWMGGFPEDES 300 (480)
T ss_pred eE----EEEEeeeccCCCCCChh
Confidence 21 00111235666676554
No 52
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=21.04 E-value=1.4e+02 Score=26.42 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 018720 251 VKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDA 284 (351)
Q Consensus 251 ~~kkeLq~~L~~~i~~e~~~~eIi~~vKe~~ke~ 284 (351)
..=+++...+.+++.+|.+-+||+++..+.=-+.
T Consensus 57 ~iA~dmR~~Vr~~i~~G~sd~eI~~~~v~RYG~~ 90 (126)
T PRK10144 57 PVAVSMRHQVYSMVAEGKSEVEIIGWMTERYGDF 90 (126)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCe
Confidence 3447888999999999999999998877765544
No 53
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=20.72 E-value=2.2e+02 Score=31.41 Aligned_cols=95 Identities=18% Similarity=0.294 Sum_probs=63.7
Q ss_pred hhHHHHHHHhhhCCCCHHHHHHHhhcCCccchhh-------------hhh--hhHhhh-------hcC------------
Q 018720 29 AFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRY-------------GDT--FFEVVF-------TGG------------ 74 (351)
Q Consensus 29 ~FrDalv~~l~~~~gdLEavak~L~gs~LdyrRY-------------~e~--LFdIl~-------aGG------------ 74 (351)
.|||+|..-+....++.+.++..|.||.-.|+++ .|. |+|.+- +.|
T Consensus 401 ~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S 480 (688)
T TIGR02100 401 RYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPWASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYS 480 (688)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcCEEEEEEeCCCCchHHHHHHhhccchhhcccccccccccccc
Confidence 3999999888766689999999998886555544 443 888754 222
Q ss_pred -----------------------------cCCCCCcCcCCCC---------CCCcee------eccC--cchhhhhhHHH
Q 018720 75 -----------------------------RTQPGTTKPDEGE---------RHSYSI------IDCE--PQREAILPSVI 108 (351)
Q Consensus 75 -----------------------------lLaPGG~~~~dg~---------~~~~ci------f~a~--~~~e~i~~y~q 108 (351)
++.||--.+--|+ ..+||- |.=. .....+..|++
T Consensus 481 ~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g~t~~G~~n~y~~~~~~~~~dW~~~~~~~~l~~~~k 560 (688)
T TIGR02100 481 WNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFGRTQQGNNNAYCQDNEIGWVDWSLDEGDDELLAFTK 560 (688)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhccCCCCCCCCccCCCcccccCcccccccHHHHHHHH
Confidence 4567755554332 236664 3311 23346888888
Q ss_pred HHHHHHhhhhhhHHH
Q 018720 109 YIQKILRRRPFLIKN 123 (351)
Q Consensus 109 vf~KLiRRykYL~K~ 123 (351)
-+.+|.|+|+-|...
T Consensus 561 ~Li~lRk~~~~l~~~ 575 (688)
T TIGR02100 561 KLIALRKAHPVLRRE 575 (688)
T ss_pred HHHHHHHhCchhccc
Confidence 888888998876654
No 54
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=20.38 E-value=87 Score=23.27 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=19.1
Q ss_pred CCCCCCccccccccccccCCCCchhhHHHHHHHhhhCCCCHHHHHHH
Q 018720 5 EKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKC 51 (351)
Q Consensus 5 ~kP~L~G~RiKTRKRd~k~k~dP~~FrDalv~~l~~~~gdLEavak~ 51 (351)
-+|++.|+||.. +.|+..+ ..|-+.|.++..
T Consensus 10 G~P~i~GTRI~v---------------~~i~~~~-~~G~s~eeI~~~ 40 (56)
T PF04255_consen 10 GQPVIRGTRIPV---------------RDILDLL-AAGESPEEIAED 40 (56)
T ss_dssp G--EETTSS-BH---------------HHHHHHH-HTT--HHHHHHH
T ss_pred CcceEcCceecH---------------HHHHHHH-HcCCCHHHHHHH
Confidence 379999999988 6677777 566677776654
No 55
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=20.34 E-value=55 Score=25.86 Aligned_cols=41 Identities=29% Similarity=0.474 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcChhHHHHHHHhccccccccccCCCCCCCHHH
Q 018720 185 ITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEG 227 (351)
Q Consensus 185 ~t~~F~~~l~e~~~~~L~s~LrK~gld~rLleffP~nKRs~e~ 227 (351)
+...|.....|+ +.+...+++.|.....+++||++..+...
T Consensus 4 iSSt~~Dl~~eR--~~l~~~i~~~~~~~~~~e~~~a~~~~~~~ 44 (83)
T PF13271_consen 4 ISSTFRDLKEER--DALIEAIRRLGCEPVGMEFFPASDQSPLE 44 (83)
T ss_pred EecChhhHHHHH--HHHHHHHHHCCCeeeeeeeecCCCCCHHH
Confidence 344456655666 57888889999999999999998665543
Done!