Query 018720
Match_columns 351
No_of_seqs 81 out of 83
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 05:01:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ug3_A EIF4GI, eukaryotic prot 99.9 3.8E-26 1.3E-30 219.8 18.2 269 28-335 8-286 (339)
2 3l6a_A Eukaryotic translation 99.9 3.8E-23 1.3E-27 202.3 18.5 177 140-339 104-298 (364)
3 1paq_A Translation initiation 99.0 1.2E-09 4.2E-14 98.0 9.9 84 251-334 21-105 (189)
4 3d3m_A Eukaryotic translation 98.9 4.3E-09 1.5E-13 92.6 8.1 81 254-334 2-93 (168)
5 3jui_A Translation initiation 98.5 1.7E-06 5.8E-11 77.3 12.5 82 252-334 14-99 (182)
6 2ful_A EIF-5, eukaryotic trans 92.0 0.2 6.9E-06 44.5 5.6 40 282-334 42-82 (177)
7 1h2v_C 80 kDa nuclear CAP bind 90.2 7.2 0.00025 41.7 16.2 251 29-335 294-561 (771)
8 4b8b_A General negative regula 89.9 9.2 0.00032 40.1 16.2 199 141-349 286-542 (603)
9 3clj_A Protein NRD1; CTD-inter 49.0 32 0.0011 30.0 6.1 49 120-172 94-143 (157)
10 2bwb_A Ubiquitin-like protein 43.6 16 0.00056 25.4 2.7 25 28-52 17-43 (46)
11 3d9j_A RNA-binding protein 16; 42.9 84 0.0029 26.4 7.6 65 104-171 60-132 (145)
12 3l6a_A Eukaryotic translation 40.6 1.5E+02 0.0051 28.6 10.0 157 131-296 53-222 (364)
13 2jy5_A Ubiquilin-1; UBA, alter 35.7 27 0.00094 24.7 2.9 26 27-52 21-48 (52)
14 2iu1_A EIF5, eukaryotic transl 35.2 15 0.00053 33.2 1.9 52 270-339 29-84 (208)
15 2fp1_A Chorismate mutase; alph 33.1 44 0.0015 29.1 4.4 66 236-302 5-71 (166)
16 1w53_A Phosphoserine phosphata 32.9 1.6E+02 0.0055 23.2 7.2 52 238-290 13-65 (84)
17 1vej_A Riken cDNA 4931431F19; 31.9 42 0.0015 25.8 3.6 26 27-52 38-65 (74)
18 2j6y_A Phosphoserine phosphata 31.6 1.9E+02 0.0064 24.1 7.7 63 239-302 13-76 (111)
19 3q8i_A Odorant binding protein 30.9 1.7E+02 0.0059 22.7 7.4 68 255-326 8-78 (124)
20 2knz_A Ubiquilin-4; cytoplasm, 30.6 33 0.0011 24.4 2.6 25 28-52 21-47 (53)
21 1wr1_B Ubiquitin-like protein 30.3 34 0.0012 25.1 2.7 25 28-52 27-53 (58)
22 3g1g_A GAG polyprotein, capsid 25.8 94 0.0032 24.9 4.7 70 222-291 11-86 (87)
23 2km4_A Regulator of TY1 transp 25.0 1.4E+02 0.0048 24.7 6.0 60 109-171 67-128 (142)
24 1fr2_A Colicin E9 immunity pro 24.6 54 0.0019 26.0 3.2 23 265-287 59-81 (86)
25 4flb_A Regulation of nuclear P 24.4 90 0.0031 25.2 4.6 115 28-172 4-126 (132)
26 2hl7_A Cytochrome C-type bioge 23.7 84 0.0029 24.8 4.1 30 252-281 44-73 (84)
27 1gxg_A Colicin E8 immunity pro 23.2 61 0.0021 25.6 3.2 22 266-287 59-80 (85)
28 2kw0_A CCMH protein; oxidoredu 22.6 89 0.0031 25.0 4.1 31 252-282 41-71 (90)
29 3u43_A Colicin-E2 immunity pro 21.7 67 0.0023 26.0 3.2 22 266-287 60-81 (94)
30 3r72_A Odorant binding protein 21.6 2.2E+02 0.0075 22.0 6.3 42 282-324 34-75 (122)
31 3t72_q RNA polymerase sigma fa 20.9 1.8E+02 0.0062 22.8 5.6 71 214-296 16-95 (99)
32 2dah_A Ubiquilin-3; UBA domain 20.2 67 0.0023 23.0 2.6 26 27-52 18-45 (54)
No 1
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.94 E-value=3.8e-26 Score=219.78 Aligned_cols=269 Identities=10% Similarity=0.101 Sum_probs=203.1
Q ss_pred hhhHHHHHHHhhh--CCCCHHHHHHHh-hcCCccchhhhhhhhHhhhhcCcCCCCCcCcCCCCCCCceeeccCcchhhhh
Q 018720 28 AAFSDAVVQIYLD--NAGDLELIAKCI-ESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAIL 104 (351)
Q Consensus 28 ~~FrDalv~~l~~--~~gdLEavak~L-~gs~LdyrRY~e~LFdIl~aGGlLaPGG~~~~dg~~~~~cif~a~~~~e~i~ 104 (351)
+.|...+-..+.+ ..||++.+...+ +=....| +.+....++... .| +. + ..-.
T Consensus 8 ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~--~~~~v~~~i~~~---------le---~~-------~---~~re 63 (339)
T 1ug3_A 8 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSL--LFIFVRHGVEST---------LE---RS-------A---IARE 63 (339)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGG--HHHHHHHHHHHH---------TT---TC-------H---HHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCccc--HHHHHHHHHHHH---------hC---CC-------H---HHHH
Confidence 3455555556655 447999998888 3222222 344433333211 11 11 1 1233
Q ss_pred hHHHHHHHHHhhhhhhHHHhHHHHHHHHHhhhcc---ChhhhHHHHHHHHHHHhhhhcCCCCc-hhhhhhhhhhhhcccc
Q 018720 105 PSVIYIQKILRRRPFLIKNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPE-TVFQPLLKDNLVGKGL 180 (351)
Q Consensus 105 ~y~qvf~KLiRRykYL~K~lEe~~~klL~~l~~F---~~~~R~KLA~~tal~~s~k~~G~~p~-~vL~~L~~dhLVkdG~ 180 (351)
.-..++..|....-.=...++.-..+++..+.-. -|..+.+||.++|.+++ +|.+|. ++++++. ++|+++|.
T Consensus 64 ~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~---~g~l~~~~l~~~~~-~~l~~~g~ 139 (339)
T 1ug3_A 64 HMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQ---EGGVPMGELFREIT-KPLRPLGK 139 (339)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGS---TTSCCHHHHHHHHT-TTHHHHTC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHH---CCCCCHHHHHHHHH-Hhhhccch
Confidence 4455677776554333344444455555555544 47789999999999999 999999 8888877 89999999
Q ss_pred hHHHHHHHHHHHHhhcChhHHHHHHHhccccccccccCCCCCCCHHHHHHHHhhcCChhHHHHHHhhhHH--HHHHHHHH
Q 018720 181 VLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFE--VKLKDMKS 258 (351)
Q Consensus 181 aL~F~t~~F~~~l~e~~~~~L~s~LrK~gld~rLleffP~nKRs~e~f~~~F~~~GL~~lve~~~kq~~~--~~kkeLq~ 258 (351)
+..|++.+|+.|.+++|.+.+.+.++++||+ |++|||+|+| +++||+++||+.++.|+.++.++ ..++++++
T Consensus 140 ~~~fl~~vl~~l~~~~g~~~l~~~~~~s~l~--l~~f~P~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~ 213 (339)
T 1ug3_A 140 AASLLLEILGLLCKSMGPKKVGTLWREAGLS--WKEFLPEGQD----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNR 213 (339)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTCC--GGGTSCTTCC----HHHHHHHTTCGGGC----------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHcCCC--HHHhCCCchh----HHHHHHHCCceeecCCcccccccccCCHHHHHH
Confidence 9999999999999999999999999999998 9999999998 88899999999999999988887 67899999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhh-ccccCchhhhhHHHHHHHHhhhHHHhHHHhhch
Q 018720 259 TLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDA-VQWSGKNQQQNANAALRQVSTKSVLCLCAASHQ 335 (351)
Q Consensus 259 ~L~~~i~~e~~~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~s-veWs~K~eq~~~eqAlr~lk~yapLL~af~~~~ 335 (351)
+|+++++++.+.++|+.+||+.+.+++++++++++.+|+++|++ ++|++. . .++ .+++++|+|||..|++++
T Consensus 214 ~L~~~l~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~-~--~~~--~~~l~~~~pll~~~~~~~ 286 (339)
T 1ug3_A 214 QLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETP-L--RVD--VAVLKARAKLLQKYLCDE 286 (339)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHHTEECSSS-C--EEC--HHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHcCCCHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHHHHhcCCc-h--HHH--HHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999986 899654 2 222 278999999999999764
No 2
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.90 E-value=3.8e-23 Score=202.32 Aligned_cols=177 Identities=16% Similarity=0.172 Sum_probs=158.4
Q ss_pred hhhhHHHHHHHHHHHhhhhcCCCCchhhhhhhhhhhhcccchHHHHHHHHHHHHhhcChhHHHHHHHhccccccccccCC
Q 018720 140 ENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFP 219 (351)
Q Consensus 140 ~~~R~KLA~~tal~~s~k~~G~~p~~vL~~L~~dhLVkdG~aL~F~t~~F~~~l~e~~~~~L~s~LrK~gld~rLleffP 219 (351)
|.--.-||.+.|.++. .|.+|++-+..++ ++|.+..|.+.+|+.|..++|.+.+.+.+|++|++ +++|||
T Consensus 104 P~a~~~la~f~ar~i~---~~~l~~~~l~~~l-----~~G~~~~l~l~vl~~~~k~~G~~~l~~l~~~sgl~--l~~FlP 173 (364)
T 3l6a_A 104 PLVKSYLAQFAARAII---SELVSISELAQPL-----ESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVN--MQKMLP 173 (364)
T ss_dssp TTHHHHHHHHHHHHHH---TTSSCHHHHHHHH-----GGGTTTTHHHHHHHHHHHHSCHHHHHHHHHHHTCC--SGGGSC
T ss_pred ccHHHHHHHHHHHHHH---cCCCCHHHHHHHh-----cccchHHHHHHHHHHHHHhcCHHHHHHHHHHcCCC--HHHhCC
Confidence 4446889999999999 9999999887654 56999999999999999999999999999999994 999999
Q ss_pred CCCCCHHHHHHHHhhcCChhHHHHHHhhhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHh
Q 018720 220 SSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDIL 299 (351)
Q Consensus 220 ~nKRs~e~f~~~F~~~GL~~lve~~~kq~~~~~kkeLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lpe~evv~~iW~~l 299 (351)
+++|+.++|.++|+++||+.++. ..+++++|.++++++.++.+|+..||+.+.++.+||.++|+++|++|
T Consensus 174 e~~~~~~~~~e~~~~~~L~~l~~----------~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v 243 (364)
T 3l6a_A 174 EIDQNKDRMLEILEGKGLSFLFP----------LLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSF 243 (364)
T ss_dssp GGGCSHHHHHHHHHHHTCGGGCH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHhCCCcccCC----------HHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHH
Confidence 99999999999999999999984 46999999999999999999999999999999999999999999999
Q ss_pred hhhc--ccc------------CchhhhhHHHHHHHHhhhHHHhHHHhhc----hhHHH
Q 018720 300 MDAV--QWS------------GKNQQQNANAALRQVSTKSVLCLCAASH----QLYLI 339 (351)
Q Consensus 300 M~sv--eWs------------~K~eq~~~eqAlr~lk~yapLL~af~~~----~~~~~ 339 (351)
|+++ +|| +| +++..++ +.+++|+|+|..|+.+ |+.++
T Consensus 244 ~~~~~~~~~~~~~~~d~~~~~~k-~~~~~~~--~~l~~~~~ll~~~~~~~~~~q~~~L 298 (364)
T 3l6a_A 244 LQYISSEVNPPSDETDSSSAPSK-EQLEQEK--QLLLSFKPVMQKFLHDHVDLQVSAL 298 (364)
T ss_dssp HHHHHHHHC----------CCCH-HHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcccccccccccccccH-HHHHHHH--HHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9998 565 35 6666555 5799999999999964 55554
No 3
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=99.00 E-value=1.2e-09 Score=97.95 Aligned_cols=84 Identities=11% Similarity=0.060 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhc-cccCchhhhhHHHHHHHHhhhHHHhH
Q 018720 251 VKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAV-QWSGKNQQQNANAALRQVSTKSVLCL 329 (351)
Q Consensus 251 ~~kkeLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~sv-eWs~K~eq~~~eqAlr~lk~yapLL~ 329 (351)
.-++|+++.|++.++++.+++.|+..|+..+..+++|++||++.||.++|+.+ +|+++++....+++.+++++|+|+|.
T Consensus 21 ~F~~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n~s~~ev~~~v~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~ 100 (189)
T 1paq_A 21 DFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLFK 100 (189)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999888 99988444478899999999999999
Q ss_pred HHhhc
Q 018720 330 CAASH 334 (351)
Q Consensus 330 af~~~ 334 (351)
.|+++
T Consensus 101 ~~~~~ 105 (189)
T 1paq_A 101 RQAFD 105 (189)
T ss_dssp GTCCS
T ss_pred HHHcC
Confidence 99964
No 4
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=98.87 E-value=4.3e-09 Score=92.61 Aligned_cols=81 Identities=10% Similarity=0.083 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhccc--cC-chh-hh-------hHHHHHHHHh
Q 018720 254 KDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQW--SG-KNQ-QQ-------NANAALRQVS 322 (351)
Q Consensus 254 keLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~sveW--s~-K~e-q~-------~~eqAlr~lk 322 (351)
-+||++|.++++++.++.+|+..+++-....++|++||++.+|+++|+.+.| ++ ++. ++ +.+++.++++
T Consensus 2 ~~~~~~L~~~l~~~~~~~~i~~~i~en~~~~~~s~~ev~~al~~avl~~i~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~ 81 (168)
T 3d3m_A 2 LKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLL 81 (168)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHSCGGGGGCHHHHHHHHHHHHHHHHHHHSCCC-------CCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhccccccccccccccchhHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999 44 422 12 4468999999
Q ss_pred hhHHHhHHHhhc
Q 018720 323 TKSVLCLCAASH 334 (351)
Q Consensus 323 ~yapLL~af~~~ 334 (351)
+|+|+|..|+.+
T Consensus 82 ~~~~ll~~~~~~ 93 (168)
T 3d3m_A 82 SFKPVMQKFLHD 93 (168)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 999999999964
No 5
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=98.46 E-value=1.7e-06 Score=77.29 Aligned_cols=82 Identities=11% Similarity=0.082 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhc--cccC--chhhhhHHHHHHHHhhhHHH
Q 018720 252 KLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAV--QWSG--KNQQQNANAALRQVSTKSVL 327 (351)
Q Consensus 252 ~kkeLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~sv--eWs~--K~eq~~~eqAlr~lk~yapL 327 (351)
-.+|.+..|++.++++.+++.++..++...-.+++|++||++.||.++|+.+ .|++ . .....+++.+.+++|+|+
T Consensus 14 F~~Ev~~sl~ra~~e~~~~d~~~LEinslr~a~N~s~~eV~~av~~ail~~~~~~~~~~~~-~~~~~~a~~~~i~~~~~l 92 (182)
T 3jui_A 14 FQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLD-SSRYCALLLPLLKAWSPV 92 (182)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGGGCCSSCC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcccccC-hhhHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999997 4565 4 344455899999999999
Q ss_pred hHHHhhc
Q 018720 328 CLCAASH 334 (351)
Q Consensus 328 L~af~~~ 334 (351)
|..|+++
T Consensus 93 l~~~~~~ 99 (182)
T 3jui_A 93 FRNYIKR 99 (182)
T ss_dssp HHHHCCS
T ss_pred HHHHhCC
Confidence 9999763
No 6
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=92.02 E-value=0.2 Score=44.50 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=32.6
Q ss_pred HhcCC-CchHHHHHHHHHhhhhccccCchhhhhHHHHHHHHhhhHHHhHHHhhc
Q 018720 282 KDAKL-PDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVSTKSVLCLCAASH 334 (351)
Q Consensus 282 ke~~l-pe~evv~~iW~~lM~sveWs~K~eq~~~eqAlr~lk~yapLL~af~~~ 334 (351)
++-++ ..++++.++|.++|+ +++++++++|+|+|..|+++
T Consensus 42 ~~l~~~~~~~~~~vl~~~lf~-------------~~i~~~l~k~~~lL~~~~~~ 82 (177)
T 2ful_A 42 AELDVLNDPKIGCVLAQCLFD-------------EDIVNEIAEHNAFFTKILVT 82 (177)
T ss_dssp HHTTCTTCTTHHHHHHHHSCS-------------TTHHHHTTSCHHHHHHHCCS
T ss_pred HhcCcchhhHHHHHHHHHHhc-------------hhHHHHHHHHHHHHHHHcCC
Confidence 34444 458999999999995 25778999999999999954
No 7
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=90.24 E-value=7.2 Score=41.69 Aligned_cols=251 Identities=9% Similarity=0.043 Sum_probs=159.9
Q ss_pred hhHHHHHHHhhhCCCCHHHHHHHhhcCC--ccchhhhhhhhHhhhhcCcCCCCCcCcCCCCCCCceeecc----Ccchhh
Q 018720 29 AFSDAVVQIYLDNAGDLELIAKCIESSD--LNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDC----EPQREA 102 (351)
Q Consensus 29 ~FrDalv~~l~~~~gdLEavak~L~gs~--LdyrRY~e~LFdIl~aGGlLaPGG~~~~dg~~~~~cif~a----~~~~e~ 102 (351)
.|||.++.+++--.+|-+..|+.|-+=. -.+ ++.+.+.| |||.. |.+.-.
T Consensus 294 l~re~ildIi~~~~~nrkecA~~Ll~l~~~~~~-~~e~~iVE-----------------------~i~~el~~LP~p~~~ 349 (771)
T 1h2v_C 294 VIEENLHCIIKSHWKERKTCAAQLVSYPGKNKI-PLNYHIVE-----------------------VIFAELFQLPAPPHI 349 (771)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSSCC-CHHHHHHH-----------------------HHHHHHTCSSCCSSC
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcc-cHHHHHHH-----------------------HHHHHHhcCCCCchH
Confidence 5799999999888888999999993210 000 12222222 23322 333334
Q ss_pred hhhHHHHHHHHHhhh-hhhHHHhHHHHHHHHHhhhccChhhhHHHHHHHHHHHhhhhcC--CCCchhhhhhhhhhhhccc
Q 018720 103 ILPSVIYIQKILRRR-PFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSG--LPPETVFQPLLKDNLVGKG 179 (351)
Q Consensus 103 i~~y~qvf~KLiRRy-kYL~K~lEe~~~klL~~l~~F~~~~R~KLA~~tal~~s~k~~G--~~p~~vL~~L~~dhLVkdG 179 (351)
..-|-.|+..|-+-- +=+...|+..+..+-.-|+..+.+-+.+++-..|..+| |- ..|=+....-+. +=...
T Consensus 350 ~iyY~sll~eLCkl~P~~~~~v~~~ai~~lY~~i~~md~e~~~Rf~dwFShhLS---NF~f~W~W~eW~~~~e--~~~~~ 424 (771)
T 1h2v_C 350 DVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLS---NFQFRWSWEDWSDCLS--QDPES 424 (771)
T ss_dssp HHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHTGGGBCHHHHHHHHHHHHHHHT---TTTTCCCGGGGGGGTT--SCTTS
T ss_pred HHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHh---cCCcCccHHHhHHhhc--CCccC
Confidence 468889999999988 45677889999999999999999999999999999999 87 445444332211 11223
Q ss_pred chHHHHHHHHHHHHhhcChhHHHHHHHhccccccccccCCCCCCCHHHHHHHHhhcCChhHHHHHHhhhHHHHHHHHHHH
Q 018720 180 LVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKST 259 (351)
Q Consensus 180 ~aL~F~t~~F~~~l~e~~~~~L~s~LrK~gld~rLleffP~nKRs~e~f~~~F~~~GL~~lve~~~kq~~~~~kkeLq~~ 259 (351)
=.--|+..+|..-+.-...+.+ ++ -+-+-+-.++|+ +..+.. -|.+++-+.+ .+ ..+-++
T Consensus 425 p~r~Fik~ll~k~~RLSy~~rI----k~-~lP~~~~~llp~-~p~p~f---~y~~e~~~~~-p~----------~~~a~~ 484 (771)
T 1h2v_C 425 PKPKFVREVLEKCMRLSYHQRI----LD-IVPPTFSALCPS-NPTCIY---KYGDESSNSL-PG----------HSVALC 484 (771)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHH----HT-TSCGGGGGGSCC-CCCCCC---TTSTTSCTTS-TT----------HHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHH----HH-hCcHHHHhhCCC-CCCCCc---eeCCccccCC-cc----------hHHHHH
Confidence 4456888888777765545444 22 333337778887 344422 2222221100 01 224566
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcC-------CC-chHHHHHHHHHhhhhccccCchhhhhHHHHHHHHhhhHHHhHHH
Q 018720 260 LTTQIAEETEMSEVIESVKQRVKDAK-------LP-DIEVVRILWDILMDAVQWSGKNQQQNANAALRQVSTKSVLCLCA 331 (351)
Q Consensus 260 L~~~i~~e~~~~eIi~~vKe~~ke~~-------lp-e~evv~~iW~~lM~sveWs~K~eq~~~eqAlr~lk~yapLL~af 331 (351)
|.+++.+.+|.+||+..+++...... .+ +...+.++|+|+.... +| ..+ -++.-+.+|.++|..+
T Consensus 485 l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~ll~~G---sk---S~S-H~~~~lery~~~lk~l 557 (771)
T 1h2v_C 485 LAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLA---AK---SFS-HSFSALAKFHEVFKTL 557 (771)
T ss_dssp HHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHS---TT---CHH-HHHHHHHHTHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHhchhcccccccccccccchHHHHHHHHHHHHhc---cc---hHH-HHHHHHHHHHHHHHHH
Confidence 77788888999999988887221111 11 1258899999998773 33 222 6788899999999999
Q ss_pred hhch
Q 018720 332 ASHQ 335 (351)
Q Consensus 332 ~~~~ 335 (351)
++..
T Consensus 558 ~~~~ 561 (771)
T 1h2v_C 558 AESD 561 (771)
T ss_dssp TSSH
T ss_pred cCCH
Confidence 8753
No 8
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=89.93 E-value=9.2 Score=40.11 Aligned_cols=199 Identities=20% Similarity=0.215 Sum_probs=127.4
Q ss_pred hhhHHHHHHHHHHHhhhhcCCCCchhhhhhhh----hhhhcc---cchHHHHHHH-------HHHHHhhc----ChhHHH
Q 018720 141 NERKKLAIFTALAFSQKLSGLPPETVFQPLLK----DNLVGK---GLVLSFITDF-------FKEYLVDN----SLDDLI 202 (351)
Q Consensus 141 ~~R~KLA~~tal~~s~k~~G~~p~~vL~~L~~----dhLVkd---G~aL~F~t~~-------F~~~l~e~----~~~~L~ 202 (351)
..|+-...+.++.-+ +...-..++..+.. +.++.. +.+++++... |..|+.++ +.+.++
T Consensus 286 ~~~k~~~~~~~Ii~k---D~~~l~rildi~~elk~L~~lL~~~p~~faldLAalAs~rg~lnLe~WL~~~l~~~~~~~lL 362 (603)
T 4b8b_A 286 DDSKIVDAAKIIINS---DDAPIANFLKSLLDTGRLDTVINKLPFNEAFKILPCARQIGWEGFDTFLKTKVSPSNVDVVL 362 (603)
T ss_dssp CHHHHHHHHHHHHHH---SCSCCSHHHHHHHHTTCHHHHHHHSCTTHHHHTHHHHHHHTCCCHHHHHHHHCCTTTHHHHH
T ss_pred ChhHHHHHHHHHHhc---CchhHHHHHHHHHHhChHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHhhcCchHHH
Confidence 345555666666665 55555566665532 223333 5555555442 56666554 445566
Q ss_pred HHHHh-ccccc-cc--cccCCCCCCCHHHHHHHHhhcCCh-hHHHHHHhhhH----------------------------
Q 018720 203 AILKR-GKMED-NL--LDFFPSSKRSAEGFSEHFTKEGLI-PLVEYNEKKIF---------------------------- 249 (351)
Q Consensus 203 s~LrK-~gld~-rL--leffP~nKRs~e~f~~~F~~~GL~-~lve~~~kq~~---------------------------- 249 (351)
+.|+. +..++ .- ..-.|.+-++.-.|-+..++..|. +.++-.+.-+.
T Consensus 363 ~FL~~K~~~e~~~~~~~~~~~L~i~tv~~lLk~L~~~~l~~e~~e~l~~vq~~~lq~yPRLiN~G~G~D~~i~an~~~~~ 442 (603)
T 4b8b_A 363 ESLEVQTKMTDTNTPFRSLKTFDLFAFHSLIEVLNKCPLDVLQLQRFESLEFSLLIAFPRLINFGFGHDEAILANGDIAG 442 (603)
T ss_dssp HHHHHHHHCCCC--CSCTTTSCCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHCGGGTTTTSSCHHHHHTTCSSSC
T ss_pred HHHHHHhhccccCCCCCCCceecHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCchhhcCCCcchhhhhccCCCCC
Confidence 66653 22221 00 011222333566666677776666 43444333322
Q ss_pred --HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhccccCchhhhhHHHHHHHHhhhHHH
Q 018720 250 --EVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVSTKSVL 327 (351)
Q Consensus 250 --~~~kkeLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~sveWs~K~eq~~~eqAlr~lk~yapL 327 (351)
..+.+|.....+.|.+++.++++||+.++.......--|.||-.|+=.++.+--.+=.+ --.++|+.-|-|
T Consensus 443 ~~~dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~-------YP~~eL~iTA~L 515 (603)
T 4b8b_A 443 INNDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQD-------YPLDALATTSVL 515 (603)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGG-------SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhh-------CCHHHHHHHHHH
Confidence 35789999999999999999999999999977766677899999999999987666555 345667778899
Q ss_pred hHHHhhchhH-----HHHHHHHHHHhh
Q 018720 328 CLCAASHQLY-----LIAFSLIIHAVA 349 (351)
Q Consensus 328 L~af~~~~~~-----~~~~~~~~~~~~ 349 (351)
|...+.++|. -+|+..|..|+.
T Consensus 516 FG~LI~~~Ll~~~~L~iALr~ILeAlr 542 (603)
T 4b8b_A 516 FGSMILFQLLRGFVLDVAFRIIMRFAK 542 (603)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccCcchHHHHHHHHHHHHh
Confidence 9999998875 366677777763
No 9
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=48.97 E-value=32 Score=30.01 Aligned_cols=49 Identities=12% Similarity=0.262 Sum_probs=37.9
Q ss_pred hHHHhHHHHHHHHHh-hhccChhhhHHHHHHHHHHHhhhhcCCCCchhhhhhhh
Q 018720 120 LIKNLENVTRRFMQS-LELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLK 172 (351)
Q Consensus 120 L~K~lEe~~~klL~~-l~~F~~~~R~KLA~~tal~~s~k~~G~~p~~vL~~L~~ 172 (351)
+.+ +.+.++.++.- +..=++++|.|+-.+.-+|=- +++-|+.++++|.+
T Consensus 94 v~~-~~e~i~~l~~~~~~~~~~~~k~Ki~klldiW~k---~~~Fp~e~i~~i~~ 143 (157)
T 3clj_A 94 INT-LGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDR---SGLFQKSYLNAIRS 143 (157)
T ss_dssp HHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH---HTTTTTSCCTTTTS
T ss_pred HHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---CCCCCHHHHHHHHH
Confidence 444 56666666655 443478899999999999988 89999999998754
No 10
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=43.59 E-value=16 Score=25.43 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.5
Q ss_pred hhh--HHHHHHHhhhCCCCHHHHHHHh
Q 018720 28 AAF--SDAVVQIYLDNAGDLELIAKCI 52 (351)
Q Consensus 28 ~~F--rDalv~~l~~~~gdLEavak~L 52 (351)
-+| |++.++.|..++||.|....+|
T Consensus 17 MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 17 MGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp TTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 356 6778899999999999888877
No 11
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=42.86 E-value=84 Score=26.38 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHhhhhh--------hHHHhHHHHHHHHHhhhccChhhhHHHHHHHHHHHhhhhcCCCCchhhhhhh
Q 018720 104 LPSVIYIQKILRRRPF--------LIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLL 171 (351)
Q Consensus 104 ~~y~qvf~KLiRRykY--------L~K~lEe~~~klL~~l~~F~~~~R~KLA~~tal~~s~k~~G~~p~~vL~~L~ 171 (351)
.+..=+++-++|..+. --..|...+.+++..+-.-.+..|.|+..+..+|-- +|.-|+.+++.|.
T Consensus 60 L~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW~~---r~vF~~~~l~~l~ 132 (145)
T 3d9j_A 60 VPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQK---NNVFKSEIIQPLL 132 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHH---TTSSCHHHHHHHH
T ss_pred eehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC---CCCCCHHHHHHHH
Confidence 3344455555554442 234466667666654434468899999999999998 8999999999875
No 12
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=40.62 E-value=1.5e+02 Score=28.56 Aligned_cols=157 Identities=13% Similarity=0.156 Sum_probs=75.3
Q ss_pred HHHhhhccChhhhHHHHHHHHHHHhhhhcCCCCchhhhh-h------hhhhhhcccchHHHHHHHHHHHHhhcC--hhHH
Q 018720 131 FMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQP-L------LKDNLVGKGLVLSFITDFFKEYLVDNS--LDDL 201 (351)
Q Consensus 131 lL~~l~~F~~~~R~KLA~~tal~~s~k~~G~~p~~vL~~-L------~~dhLVkdG~aL~F~t~~F~~~l~e~~--~~~L 201 (351)
+...|++ ++.+|+.++.+.+-+.. +|.+++.-+.. + +.|-.+.-=-+-+++..|+..-+.+.. +..+
T Consensus 53 i~~aLer-~~~~re~~~~LL~~L~~---~~~ls~~~~~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l 128 (364)
T 3l6a_A 53 IILSLDR-SDEDKEKASSLISLLKQ---EGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISEL 128 (364)
T ss_dssp HHHHHTS-CHHHHHHHHHHHHHHHH---TTSSCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHCC-ChHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3346666 68888888888777777 78876433222 1 111111111222233333333333322 2334
Q ss_pred HHHHHhccccccccccCC--CCCCCHHHHHHHHhhcCChhHHHHHHhh-hHHHHHHHHHHHHHHHHhcc-CCHHHHHHHH
Q 018720 202 IAILKRGKMEDNLLDFFP--SSKRSAEGFSEHFTKEGLIPLVEYNEKK-IFEVKLKDMKSTLTTQIAEE-TEMSEVIESV 277 (351)
Q Consensus 202 ~s~LrK~gld~rLleffP--~nKRs~e~f~~~F~~~GL~~lve~~~kq-~~~~~kkeLq~~L~~~i~~e-~~~~eIi~~v 277 (351)
.+.++.|+--.-+++.|= ......+...+.|+++||+ +.+|.-.. ++. ..+...+.+.==+. .|..++...+
T Consensus 129 ~~~l~~G~~~~l~l~vl~~~~k~~G~~~l~~l~~~sgl~-l~~FlPe~~~~~---~~~~e~~~~~~L~~l~~~~~l~~~L 204 (364)
T 3l6a_A 129 AQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVN-MQKMLPEIDQNK---DRMLEILEGKGLSFLFPLLKLEKEL 204 (364)
T ss_dssp HHHHGGGTTTTHHHHHHHHHHHHSCHHHHHHHHHHHTCC-SGGGSCGGGCSH---HHHHHHHHHHTCGGGCHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHHHHHHhcCHHHHHHHHHHcCCC-HHHhCCccccch---hHHHHHHHhCCCcccCCHHHHHHHH
Confidence 444444322111111110 0123566777888888884 66665332 221 22222222211111 2447899999
Q ss_pred HHHHHhcCCCchHHHHHHH
Q 018720 278 KQRVKDAKLPDIEVVRILW 296 (351)
Q Consensus 278 Ke~~ke~~lpe~evv~~iW 296 (351)
.+..++. -|..+++.+|=
T Consensus 205 ~~~l~~~-~~~~~i~~wik 222 (364)
T 3l6a_A 205 LKQIKLD-PSPQTIYKWIK 222 (364)
T ss_dssp HHHHHHC-CCHHHHHHHHH
T ss_pred HHHHHcC-CChHHHHHHHH
Confidence 8888776 34566766653
No 13
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=35.67 E-value=27 Score=24.72 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.1
Q ss_pred chhh--HHHHHHHhhhCCCCHHHHHHHh
Q 018720 27 PAAF--SDAVVQIYLDNAGDLELIAKCI 52 (351)
Q Consensus 27 P~~F--rDalv~~l~~~~gdLEavak~L 52 (351)
--+| |++.++.|..++||+|....+|
T Consensus 21 ~MGF~~~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 21 AMGFLNREANLQALIATGGDINAAIERL 48 (52)
T ss_dssp HTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 3468 8888999999999999988888
No 14
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=35.23 E-value=15 Score=33.21 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhccccCchhhhhHHHHHHHHhhhHHHhHHHhh-c---hhHHH
Q 018720 270 MSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVSTKSVLCLCAAS-H---QLYLI 339 (351)
Q Consensus 270 ~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~sveWs~K~eq~~~eqAlr~lk~yapLL~af~~-~---~~~~~ 339 (351)
.++|+..+ ++..+. +..+.++-.++++ +++++++++|+|+|..|+. + |++++
T Consensus 29 ~~~i~~ea----~~l~~k-~~~~~vl~e~lf~-------------~~i~~~l~k~~~lL~~~~~~~~~~Q~~lL 84 (208)
T 2iu1_A 29 DKEIVAEA----ERLDVK-AMGPLVLTEVLFN-------------EKIREQIKKYRRHFLRFCHNNKKAQRYLL 84 (208)
T ss_dssp HHHHHHHH----HHTTCG-GGHHHHHHHHHCS-------------TTHHHHHHHTHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH----HhcchH-HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44555333 344442 4555556666661 2577899999999999996 4 55544
No 15
>2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A*
Probab=33.08 E-value=44 Score=29.06 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=43.6
Q ss_pred CChhHHHHHHhhhHHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhh
Q 018720 236 GLIPLVEYNEKKIFEVKL-KDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDA 302 (351)
Q Consensus 236 GL~~lve~~~kq~~~~~k-keLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lpe~evv~~iW~~lM~s 302 (351)
-+.+|++...++..-... -+++..-.--+.+..=.++|++.+.+..++.++++ +.|.-||..+|+.
T Consensus 5 ~~~~Lv~LLaeR~~la~~Va~~K~~~~~pI~dp~RE~eVL~r~~~~a~~~gL~~-~~i~~ifr~Ii~~ 71 (166)
T 2fp1_A 5 QLAELVDAAAERLEVADPVAAFKWRAQLPIEDSGRVEQQLAKLGEDARSQHIDP-DYVTRVFDDQIRA 71 (166)
T ss_dssp TTHHHHHHHHHHHHTHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHH
Confidence 478899998888654433 22332211112222236799999999999999875 5667789999974
No 16
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=32.86 E-value=1.6e+02 Score=23.20 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=40.5
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-chH
Q 018720 238 IPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLP-DIE 290 (351)
Q Consensus 238 ~~lve~~~kq~~~~~kkeLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lp-e~e 290 (351)
+=|-+|...+ ++.....-++.=.+.|..+.+++|||..=|+.+++-..+ ..|
T Consensus 13 ~iL~~yl~~~-~E~~Ly~~q~fs~~~iek~i~PEeiV~iHk~~i~el~~~l~e~ 65 (84)
T 1w53_A 13 QLLSRYIAEL-TETSLYQAQKFSRKTIEHQIPPEEIISIHRKVLKELYPSLPED 65 (84)
T ss_dssp HHHHHHHHHC-CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTSCHH
T ss_pred HHHHHHHHcc-cHHHHHHHHHhhHHHHHcCCCHHHHHHHHHHHHHHhcCCChHH
Confidence 3344555544 447778888888888999999999999999999998877 555
No 17
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.95 E-value=42 Score=25.85 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.1
Q ss_pred chhh--HHHHHHHhhhCCCCHHHHHHHh
Q 018720 27 PAAF--SDAVVQIYLDNAGDLELIAKCI 52 (351)
Q Consensus 27 P~~F--rDalv~~l~~~~gdLEavak~L 52 (351)
.-+| |++.++.|..++||+|....+|
T Consensus 38 eMGF~dr~~~~~AL~~t~Gnve~Ave~L 65 (74)
T 1vej_A 38 ALGFANRDANLQALVATDGDIHAAIEML 65 (74)
T ss_dssp HHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 3567 7888999999999999988888
No 18
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=31.64 E-value=1.9e+02 Score=24.06 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=46.1
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-chHHHHHHHHHhhhh
Q 018720 239 PLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLP-DIEVVRILWDILMDA 302 (351)
Q Consensus 239 ~lve~~~kq~~~~~kkeLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lp-e~evv~~iW~~lM~s 302 (351)
++++=+-..+++....+-++.=.+.|..+.+++|||..=|+...+-... ..+ |.-..+-++.-
T Consensus 13 ~iL~~yl~~~~E~~Ly~aq~fsr~liek~I~PEeiV~iHk~~i~~l~~~l~e~-v~~s~d~L~Ev 76 (111)
T 2j6y_A 13 QLLSRYIAELTKTSLYQAQKFSRKTIEHQIPPEEIISIHRKVLKELYPSLPED-VFHSLDFLIEV 76 (111)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTSCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHH
Confidence 4454444555568888889999999999999999999999999888655 444 44466655543
No 19
>3q8i_A Odorant binding protein; 2.00A {Anopheles gambiae}
Probab=30.90 E-value=1.7e+02 Score=22.74 Aligned_cols=68 Identities=6% Similarity=0.044 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHHHHhcCCCc--hHHHHHHHHHhhhhccccCchhhhhHHHHHHHHhhhHH
Q 018720 255 DMKSTLTTQIAEETE-MSEVIESVKQRVKDAKLPD--IEVVRILWDILMDAVQWSGKNQQQNANAALRQVSTKSV 326 (351)
Q Consensus 255 eLq~~L~~~i~~e~~-~~eIi~~vKe~~ke~~lpe--~evv~~iW~~lM~sveWs~K~eq~~~eqAlr~lk~yap 326 (351)
+..+.+.+.-..+.. ..|.+..++ ...+|+ .+-+.+.-.|+|....+-..+.....+.++++++...|
T Consensus 8 ~~~~~~~~~C~~e~gv~~~~~~~~~----~~~~~~~~d~~~kC~~~C~~~k~g~~d~~G~~~~d~~~~~~~~~~~ 78 (124)
T 3q8i_A 8 NSMDMMRQACAPKFKVEEAELHGLR----KSIFPANPDKELKCYAMCIAQMAGTMTKKGEISFSKTMAQIEAMLP 78 (124)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHH----TTCCCSSCCHHHHHHHHHHHHHTTCBCTTSCBCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccccCCCHHHHHHHH----cCCCCCCCCcccchHHHHHHHHcCccCcCCcCCHHHHHHHHHHhCC
Confidence 333444555555432 245554443 357898 78899999999999998866688999999998876544
No 20
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=30.60 E-value=33 Score=24.37 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=21.1
Q ss_pred hhh--HHHHHHHhhhCCCCHHHHHHHh
Q 018720 28 AAF--SDAVVQIYLDNAGDLELIAKCI 52 (351)
Q Consensus 28 ~~F--rDalv~~l~~~~gdLEavak~L 52 (351)
-+| |++.++.|..++||+|....+|
T Consensus 21 MGF~~~~~~~~AL~~t~gnve~Ave~L 47 (53)
T 2knz_A 21 MGFINREANLQALIATGGDINAAIERL 47 (53)
T ss_dssp TTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 467 7888888888889999888888
No 21
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=30.25 E-value=34 Score=25.06 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.7
Q ss_pred hhh--HHHHHHHhhhCCCCHHHHHHHh
Q 018720 28 AAF--SDAVVQIYLDNAGDLELIAKCI 52 (351)
Q Consensus 28 ~~F--rDalv~~l~~~~gdLEavak~L 52 (351)
-+| |++.++.|..+.||+|....+|
T Consensus 27 MGF~d~~~~~~AL~~~~gnve~Ave~L 53 (58)
T 1wr1_B 27 MGFFDFDRNVAALRRSGGSVQGALDSL 53 (58)
T ss_dssp HTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 456 6788899988889999888887
No 22
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=25.85 E-value=94 Score=24.92 Aligned_cols=70 Identities=21% Similarity=0.173 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHhh----cCCh-hHHHHHHhh-hHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCchHH
Q 018720 222 KRSAEGFSEHFTK----EGLI-PLVEYNEKK-IFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEV 291 (351)
Q Consensus 222 KRs~e~f~~~F~~----~GL~-~lve~~~kq-~~~~~kkeLq~~L~~~i~~e~~~~eIi~~vKe~~ke~~lpe~ev 291 (351)
|-+-.+|..+|.+ ++++ ++=+|...+ ..+..-.+.++-|+-...+.-.+.|||.+|-+..+-+++.|.-|
T Consensus 11 kEPF~dfVdRl~kal~~eq~~~~vK~~m~~tLlvQNANpdCk~Il~~~~~~~~~~~e~Ik~~l~~~~~~~~~~~~~ 86 (87)
T 3g1g_A 11 SESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTAPLTDQGI 86 (87)
T ss_dssp TCCHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHSCHHHHHHHHTSCTTCCSHHHHHHHHHHHHC---------
T ss_pred CCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCcccccc
Confidence 3456667777664 4455 554553222 33444566677777777776667999999999999999988654
No 23
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=24.97 E-value=1.4e+02 Score=24.74 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=45.8
Q ss_pred HHHHHHhh-hhhhHHHhHHHHHHHHHhhhc-cChhhhHHHHHHHHHHHhhhhcCCCCchhhhhhh
Q 018720 109 YIQKILRR-RPFLIKNLENVTRRFMQSLEL-FEENERKKLAIFTALAFSQKLSGLPPETVFQPLL 171 (351)
Q Consensus 109 vf~KLiRR-ykYL~K~lEe~~~klL~~l~~-F~~~~R~KLA~~tal~~s~k~~G~~p~~vL~~L~ 171 (351)
|++.-.|| -....+.|+..++.++..+-. -+++.+.|+..+..+|=. .+.-|+.++..|.
T Consensus 67 Vlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWee---r~vf~~~~i~~L~ 128 (142)
T 2km4_A 67 VVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKE---RNIFSKQVVNDIE 128 (142)
T ss_dssp HHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH---HTCSCHHHHHHHH
T ss_pred HHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc---cCCcCHHHHHHHH
Confidence 44444343 256777899888888877644 378889999999999999 8888998888774
No 24
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=24.65 E-value=54 Score=25.97 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.5
Q ss_pred hccCCHHHHHHHHHHHHHhcCCC
Q 018720 265 AEETEMSEVIESVKQRVKDAKLP 287 (351)
Q Consensus 265 ~~e~~~~eIi~~vKe~~ke~~lp 287 (351)
..+.++++|+..||++..++.+|
T Consensus 59 ~~e~spE~Iv~~ik~wRa~~G~p 81 (86)
T 1fr2_A 59 GDDDSPSGIVNTVKQWRAANGKS 81 (86)
T ss_dssp TCCCSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCc
Confidence 34688999999999999999887
No 25
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=24.38 E-value=90 Score=25.18 Aligned_cols=115 Identities=9% Similarity=0.081 Sum_probs=70.1
Q ss_pred hhhHHHHHHHhhhCCCCHH---HHHHHhhcCCccchhhhhhhhHhhhhcCcCCCCCcCcCCCCCCCceeeccCcchhhhh
Q 018720 28 AAFSDAVVQIYLDNAGDLE---LIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAIL 104 (351)
Q Consensus 28 ~~FrDalv~~l~~~~gdLE---avak~L~gs~LdyrRY~e~LFdIl~aGGlLaPGG~~~~dg~~~~~cif~a~~~~e~i~ 104 (351)
+.|.+++.+.|....+.=+ .++... +++++|++.+-+++.- .+ . .++.+. =.
T Consensus 4 ~~~e~~l~~~L~~L~~s~~sI~~~s~w~----l~h~~~a~~Iv~~i~~--~l-------~----------~~~~~~--KL 58 (132)
T 4flb_A 4 GALESSLDRKFQSVTNTMESIQGLSSWC----IENKKHHSTIVYHWMK--WL-------R----------RSAYPH--RL 58 (132)
T ss_dssp HHHHHHHHHHHHHCCSSHHHHHHHHHHH----HHTGGGHHHHHHHHHH--HH-------H----------HSCHHH--HH
T ss_pred hHHHHHHHHHHHHCcccHHHHHHHHHHH----HHhHHHHHHHHHHHHH--HH-------H----------cCChhh--HH
Confidence 4555666666655443333 333333 5678888888776643 11 0 122111 12
Q ss_pred hHHHHHHHHH----hhh-hhhHHHhHHHHHHHHHhhhccChhhhHHHHHHHHHHHhhhhcCCCCchhhhhhhh
Q 018720 105 PSVIYIQKIL----RRR-PFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLK 172 (351)
Q Consensus 105 ~y~qvf~KLi----RRy-kYL~K~lEe~~~klL~~l~~F~~~~R~KLA~~tal~~s~k~~G~~p~~vL~~L~~ 172 (351)
+..=++|-++ |++ .+..+.|+..++.++..+ .++..|+|+-.+..+|-. .|.-|+.++..|-+
T Consensus 59 ~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~--~~~~~~~kl~~ll~iW~~---r~vf~~~~i~~L~~ 126 (132)
T 4flb_A 59 NLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALV--KDPSVSKSVERIFKIWED---RNVYPEEMIVALRE 126 (132)
T ss_dssp HHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTT--CSTTTHHHHHHHHHHHHH---HTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhcc---CCCcCHHHHHHHHH
Confidence 2223333333 333 256677888888887665 378889999999999988 88899999988743
No 26
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=23.73 E-value=84 Score=24.77 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 018720 252 KLKDMKSTLTTQIAEETEMSEVIESVKQRV 281 (351)
Q Consensus 252 ~kkeLq~~L~~~i~~e~~~~eIi~~vKe~~ 281 (351)
.=++|...+.+++.+|.+-.||+.+..+.=
T Consensus 44 iA~dlR~~V~~~l~~G~sd~eI~~~~v~RY 73 (84)
T 2hl7_A 44 IAADLRKQIYGQLQQGKSDGEIVDYMVARY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 347888999999999999999998877653
No 27
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=23.22 E-value=61 Score=25.63 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=20.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCCC
Q 018720 266 EETEMSEVIESVKQRVKDAKLP 287 (351)
Q Consensus 266 ~e~~~~eIi~~vKe~~ke~~lp 287 (351)
.+.++++|+..||++..++.+|
T Consensus 59 ~e~spE~Iv~~ik~wRa~~g~p 80 (85)
T 1gxg_A 59 NDGSPEAVIKEIKEWRAANGKS 80 (85)
T ss_dssp CCSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCc
Confidence 5689999999999999999887
No 28
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=22.57 E-value=89 Score=25.01 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 018720 252 KLKDMKSTLTTQIAEETEMSEVIESVKQRVK 282 (351)
Q Consensus 252 ~kkeLq~~L~~~i~~e~~~~eIi~~vKe~~k 282 (351)
.=++|...+.+++.+|.+-.||+.+..+.=-
T Consensus 41 iA~dlR~~Vre~l~~G~Sd~eI~~~mv~RYG 71 (90)
T 2kw0_A 41 IATDLRQKVYELMQEGKSKKEIVDYMVARYG 71 (90)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 3478889999999999999999988876543
No 29
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=21.71 E-value=67 Score=25.96 Aligned_cols=22 Identities=9% Similarity=0.145 Sum_probs=19.9
Q ss_pred ccCCHHHHHHHHHHHHHhcCCC
Q 018720 266 EETEMSEVIESVKQRVKDAKLP 287 (351)
Q Consensus 266 ~e~~~~eIi~~vKe~~ke~~lp 287 (351)
.+.++++|+..||++..++.+|
T Consensus 60 ~e~SPEgIv~~IKeWRa~nG~p 81 (94)
T 3u43_A 60 REDSPEGIVKEIKEWRAANGKS 81 (94)
T ss_dssp SCSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCc
Confidence 3578999999999999999887
No 30
>3r72_A Odorant binding protein Asp5; helical protein, odorant molecules, antennae, transport PROT; HET: NBB; 1.15A {Apis mellifera}
Probab=21.61 E-value=2.2e+02 Score=22.00 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=35.7
Q ss_pred HhcCCCchHHHHHHHHHhhhhccccCchhhhhHHHHHHHHhhh
Q 018720 282 KDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVSTK 324 (351)
Q Consensus 282 ke~~lpe~evv~~iW~~lM~sveWs~K~eq~~~eqAlr~lk~y 324 (351)
..+.+|+.+-+.+.-.|+|.-..+- ++.....+.++++++..
T Consensus 34 ~~~~~~~d~~~kC~~~C~~~k~g~~-~~g~~~~d~~~~~~~~~ 75 (122)
T 3r72_A 34 RRGEFPDDHDLQCYTTCIMKLLRTF-KNGNFDFDMIVKQLEIT 75 (122)
T ss_dssp GGTCCCCCHHHHHHHHHHHHHTTSE-ETTEECHHHHHHHHHHH
T ss_pred HcCCCCCCCCcchHHHHHHHHhCch-hcCCcCHHHHHHHHHHh
Confidence 3468999889999999999999998 66889998888888743
No 31
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=20.89 E-value=1.8e+02 Score=22.81 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=41.8
Q ss_pred ccccCCCCCCCHHHHHHHH---hhcCChhHHHHHH------hhhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 018720 214 LLDFFPSSKRSAEGFSEHF---TKEGLIPLVEYNE------KKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDA 284 (351)
Q Consensus 214 LleffP~nKRs~e~f~~~F---~~~GL~~lve~~~------kq~~~~~kkeLq~~L~~~i~~e~~~~eIi~~vKe~~ke~ 284 (351)
.++-.||..|..-.+.-.+ ...-+.+|.+-.. ++....+.+.|...+ . ...++++...+
T Consensus 16 aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~----~--------~~~l~~~~~~~ 83 (99)
T 3t72_q 16 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS----R--------SEVLRSGSSGS 83 (99)
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH----H--------HHHHHHHHHhc
Confidence 4555688777665552221 4456667765532 222222223333322 2 24678899999
Q ss_pred CCCchHHHHHHH
Q 018720 285 KLPDIEVVRILW 296 (351)
Q Consensus 285 ~lpe~evv~~iW 296 (351)
.+||.++.+-|+
T Consensus 84 ~~~~~~~~~~~~ 95 (99)
T 3t72_q 84 GTPEEKLLRAIF 95 (99)
T ss_pred CCCHHHHHHHHh
Confidence 999999988776
No 32
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.16 E-value=67 Score=23.01 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=21.5
Q ss_pred chhh--HHHHHHHhhhCCCCHHHHHHHh
Q 018720 27 PAAF--SDAVVQIYLDNAGDLELIAKCI 52 (351)
Q Consensus 27 P~~F--rDalv~~l~~~~gdLEavak~L 52 (351)
.-+| +++.++.|..++||+|....+|
T Consensus 18 ~MGF~d~~~n~~AL~~~~Gdv~~Ave~L 45 (54)
T 2dah_A 18 SMGFLNREANLQALIATGGDVDAAVEKL 45 (54)
T ss_dssp HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 3468 4567999999999999998888
Done!