Query 018721
Match_columns 351
No_of_seqs 73 out of 75
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 05:02:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 82.9 3.4 0.00012 40.7 8.2 28 257-284 459-486 (597)
2 2dfs_A Myosin-5A; myosin-V, in 79.5 7.9 0.00027 42.6 10.3 23 217-239 918-940 (1080)
3 3kdq_A Uncharacterized conserv 75.2 5.2 0.00018 34.9 6.0 57 223-293 14-70 (154)
4 1c1g_A Tropomyosin; contractIl 74.5 36 0.0012 28.3 11.8 10 227-236 27-36 (284)
5 3hnw_A Uncharacterized protein 73.8 17 0.00057 31.0 8.7 101 217-321 29-135 (138)
6 3oja_B Anopheles plasmodium-re 72.0 27 0.00092 34.3 10.9 24 314-337 548-571 (597)
7 1deq_A Fibrinogen (alpha chain 59.4 79 0.0027 31.6 11.3 117 221-340 61-195 (390)
8 1pzq_A Erythronolide synthase; 57.7 9.8 0.00033 28.3 3.5 46 246-313 4-49 (60)
9 3thf_A Protein shroom; coiled- 56.1 1.2E+02 0.0041 27.6 11.1 69 253-321 18-98 (190)
10 1i84_S Smooth muscle myosin he 53.6 53 0.0018 36.1 10.0 27 38-64 656-682 (1184)
11 3s9g_A Protein hexim1; cyclin 53.5 24 0.00083 29.3 5.6 49 292-340 47-95 (104)
12 1m1j_A Fibrinogen alpha subuni 50.8 1.8E+02 0.0061 29.9 12.4 132 195-337 38-190 (491)
13 1c1g_A Tropomyosin; contractIl 50.2 1.1E+02 0.0037 25.4 13.9 14 298-311 99-112 (284)
14 2c9l_Y EB1, zebra, BZLF1 trans 49.9 15 0.00051 27.7 3.5 25 282-306 22-46 (63)
15 3i00_A HIP-I, huntingtin-inter 47.4 37 0.0013 28.4 6.0 21 290-310 62-82 (120)
16 4fm3_A Uncharacterized hypothe 46.4 64 0.0022 26.4 7.0 67 269-342 30-96 (98)
17 2j5u_A MREC protein; bacterial 46.4 11 0.00039 34.6 2.9 14 293-306 47-60 (255)
18 1wle_A Seryl-tRNA synthetase; 45.6 1.9E+02 0.0064 29.3 11.8 62 258-319 74-139 (501)
19 1i84_S Smooth muscle myosin he 44.4 66 0.0023 35.4 8.9 11 229-239 821-831 (1184)
20 2fxo_A Myosin heavy chain, car 44.3 1.3E+02 0.0045 24.7 10.6 22 263-284 43-64 (129)
21 3na7_A HP0958; flagellar bioge 44.1 1.4E+02 0.0046 27.0 9.7 56 265-320 29-84 (256)
22 1zxa_A CGMP-dependent protein 41.1 31 0.001 26.6 4.1 42 251-292 15-56 (67)
23 2v71_A Nuclear distribution pr 40.9 2E+02 0.0069 25.8 14.1 30 213-242 10-39 (189)
24 2dfs_A Myosin-5A; myosin-V, in 40.5 2.6E+02 0.009 30.8 12.8 15 296-310 1030-1044(1080)
25 2ksd_A Aerobic respiration con 39.8 6.1 0.00021 33.4 0.0 7 37-43 23-29 (115)
26 3a2a_A Voltage-gated hydrogen 38.4 24 0.00081 26.6 3.0 25 284-308 27-51 (58)
27 1t3j_A Mitofusin 1; coiled coi 37.8 40 0.0014 27.6 4.5 33 271-303 28-61 (96)
28 3vp9_A General transcriptional 37.7 44 0.0015 27.1 4.7 57 251-307 11-86 (92)
29 1jcd_A Major outer membrane li 34.4 58 0.002 23.8 4.5 24 262-285 12-35 (52)
30 1zxa_A CGMP-dependent protein 32.8 38 0.0013 26.1 3.4 42 299-340 14-55 (67)
31 3lay_A Zinc resistance-associa 32.0 2E+02 0.0067 25.4 8.5 65 207-284 68-136 (175)
32 3ghg_A Fibrinogen alpha chain; 31.5 2.1E+02 0.0074 29.8 9.7 115 218-336 55-188 (562)
33 3m9b_A Proteasome-associated A 30.9 51 0.0017 31.1 4.7 41 298-338 56-96 (251)
34 4dk0_A Putative MACA; alpha-ha 30.7 1E+02 0.0036 28.1 6.7 40 252-291 68-107 (369)
35 2jee_A YIIU; FTSZ, septum, coi 30.3 2E+02 0.0069 22.8 7.4 20 294-313 53-72 (81)
36 1v54_K IHQ, cytochrome C oxida 29.3 28 0.00094 26.1 2.0 33 39-71 18-50 (56)
37 1k8k_E P21, ARP2/3 complex 21 29.1 79 0.0027 28.5 5.4 69 163-231 71-146 (178)
38 1gd2_E Transcription factor PA 28.8 87 0.003 24.0 4.9 16 260-275 28-43 (70)
39 3fpp_A Macrolide-specific effl 28.5 2.4E+02 0.0083 25.4 8.7 39 252-290 67-105 (341)
40 2xs1_A Programmed cell death 6 28.4 5.1E+02 0.018 26.8 13.0 126 207-335 376-521 (704)
41 2xdj_A Uncharacterized protein 28.4 48 0.0016 26.1 3.5 30 309-338 5-34 (83)
42 1nlw_A MAD protein, MAX dimeri 27.6 73 0.0025 24.6 4.3 32 276-307 41-72 (80)
43 3iv1_A Tumor susceptibility ge 27.6 2.2E+02 0.0077 22.3 7.8 23 256-278 5-28 (78)
44 3vkg_A Dynein heavy chain, cyt 27.6 9.2E+02 0.032 30.2 15.5 65 260-324 2013-2087(3245)
45 4hg6_A Cellulose synthase subu 27.5 3E+02 0.01 28.7 10.2 27 150-176 103-129 (802)
46 1wt6_A Myotonin-protein kinase 27.5 2.2E+02 0.0077 22.6 7.1 48 260-307 20-70 (81)
47 3oja_A Leucine-rich immune mol 27.4 4.1E+02 0.014 25.3 13.1 43 273-315 426-468 (487)
48 3a7p_A Autophagy protein 16; c 27.3 3.2E+02 0.011 24.0 9.4 75 210-314 65-139 (152)
49 3hhm_B NISH2 P85alpha; PI3KCA, 27.2 3.4E+02 0.012 26.4 10.0 39 298-336 207-245 (373)
50 3mq7_A Bone marrow stromal ant 26.3 1.6E+02 0.0055 25.0 6.5 48 266-313 62-109 (121)
51 3na7_A HP0958; flagellar bioge 25.9 3.6E+02 0.012 24.2 11.9 23 262-284 91-113 (256)
52 2w6a_A ARF GTPase-activating p 25.6 2.2E+02 0.0075 21.7 6.4 42 250-291 16-57 (63)
53 3m91_A Proteasome-associated A 24.8 1.5E+02 0.0052 21.5 5.3 38 299-336 12-49 (51)
54 3hnw_A Uncharacterized protein 24.2 3.2E+02 0.011 23.0 10.0 86 251-337 32-130 (138)
55 3ra3_B P2F; coiled coil domain 23.9 64 0.0022 20.8 2.7 23 215-237 2-24 (28)
56 3zwl_E Eukaryotic translation 23.6 64 0.0022 23.5 3.1 25 299-323 15-39 (50)
57 3oja_A Leucine-rich immune mol 23.6 4.9E+02 0.017 24.8 11.4 43 265-307 425-467 (487)
58 2dq0_A Seryl-tRNA synthetase; 23.2 4.3E+02 0.015 26.1 10.1 66 250-319 27-92 (455)
59 3iv1_A Tumor susceptibility ge 23.0 2.1E+02 0.0073 22.5 6.2 56 285-340 14-69 (78)
60 2i1j_A Moesin; FERM, coiled-co 22.9 44 0.0015 34.2 2.9 83 222-317 344-426 (575)
61 4hkr_A Calcium release-activat 22.4 2.1E+02 0.0071 26.5 6.9 20 156-175 151-170 (214)
62 3he5_A Synzip1; heterodimeric 22.2 62 0.0021 23.2 2.7 19 211-229 29-47 (49)
63 3nmd_A CGMP dependent protein 21.7 2E+02 0.0068 22.4 5.7 40 251-290 23-62 (72)
64 2e7s_A RAB guanine nucleotide 21.4 90 0.0031 26.9 4.1 21 322-342 94-114 (135)
65 4fm3_A Uncharacterized hypothe 21.4 3E+02 0.01 22.4 7.1 42 266-307 55-96 (98)
66 2y69_K Cytochrome C oxidase po 21.2 46 0.0016 26.5 2.0 33 39-71 42-74 (80)
67 3ol1_A Vimentin; structural ge 20.3 1.6E+02 0.0054 24.1 5.3 75 260-338 19-97 (119)
68 3qne_A Seryl-tRNA synthetase, 20.0 4.9E+02 0.017 26.3 9.8 55 260-318 39-93 (485)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.91 E-value=3.4 Score=40.65 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=18.9
Q ss_pred hhhhhHHHhhHHHHHhHHHHHHHHHHHH
Q 018721 257 AARDQELRTLSAEMNQLQSELRLARSFV 284 (351)
Q Consensus 257 a~r~qelRa~~Ae~~q~~~el~~ar~li 284 (351)
...+.+++.+.+|.++.+.++...+..|
T Consensus 459 ~~~~~~i~~l~~~~~~~~~~l~~~~~~i 486 (597)
T 3oja_B 459 NELRAEVQQLTNEQIQQEQLLQGLHAEI 486 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345677777777777777777666666
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.53 E-value=7.9 Score=42.64 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhh
Q 018721 217 YQRENLHFLSEEILRLQECLSKY 239 (351)
Q Consensus 217 YLkdHNa~LSkrIL~Lq~~l~ky 239 (351)
-+++.|..|-.+|-.||.++..-
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~ 940 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQ 940 (1080)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777766443
No 3
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=75.22 E-value=5.2 Score=34.94 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=45.3
Q ss_pred HHhhHHHHHHHHHhhhhcccCCCCChhhhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q 018721 223 HFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQ 293 (351)
Q Consensus 223 a~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~n~q 293 (351)
+-|.+||-.|..++.+.=+-++|.+|.-|...+++ |++.+-.|| -.||.++..+|..
T Consensus 14 adl~kri~qL~~ri~~n~~vQEGe~P~edp~~Ll~-----------El~~~~~~L---~~Li~~IN~TN~~ 70 (154)
T 3kdq_A 14 VEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILT-----------ELEELTTRI---NDLVRRINRTNSV 70 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTEEETTCCCSSCHHHHHH-----------HHHHHHHHH---HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCeecCCCCCCCCHHHHHH-----------HHHHHHHHH---HHHHHHHHHhccc
Confidence 45889999999999999888999999999998887 444444444 4677888888864
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=74.55 E-value=36 Score=28.32 Aligned_cols=10 Identities=0% Similarity=-0.104 Sum_probs=3.6
Q ss_pred HHHHHHHHHh
Q 018721 227 EEILRLQECL 236 (351)
Q Consensus 227 krIL~Lq~~l 236 (351)
.++-.+...+
T Consensus 27 ~~l~~l~~~~ 36 (284)
T 1c1g_A 27 ADKKAAEDRS 36 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 5
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.78 E-value=17 Score=31.05 Aligned_cols=101 Identities=14% Similarity=0.230 Sum_probs=59.8
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCChh------hhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhh
Q 018721 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQ------VDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNT 290 (351)
Q Consensus 217 YLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~q------vdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~ 290 (351)
||+.=-.++.+++-.+... ..|.+ -++.+ +.++|=+-.-.++...+.+++..+..|+-.-...+...+.-
T Consensus 29 ~L~~vA~~vd~km~ei~~~-~~~~~---l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 29 YLQRVASYINNKITEFNKE-ESYRR---MSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHT---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-cCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666532 00111 11222 23333333334445556666666666666555555556666
Q ss_pred hhhhhhHhHHHHHHHhhhhhhHHHHHHHHHH
Q 018721 291 NNQYVEENERLRAILGEWSTRAAKLERALEV 321 (351)
Q Consensus 291 n~q~~eEn~rlRa~l~Ews~raakle~ale~ 321 (351)
++.--.|++.|+.-+++-..+.++||.-|+.
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666777778888888888888888776654
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.01 E-value=27 Score=34.27 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=9.6
Q ss_pred HHHHHHHHhhhccHHHHHHHHHhh
Q 018721 314 KLERALEVERMSNIELQKKISTRR 337 (351)
Q Consensus 314 kle~ale~er~~~~~~~~~~~~~r 337 (351)
++|+.+|..+-.-.|++++.+..+
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~ 571 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKR 571 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHH
Confidence 333334433333344444444433
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.37 E-value=79 Score=31.58 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=79.5
Q ss_pred HhHHhhHHHHHHHHHhhhhcccCCCCChhh-hHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHhH
Q 018721 221 NLHFLSEEILRLQECLSKYEQSDDGSTPQV-DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENE 299 (351)
Q Consensus 221 HNa~LSkrIL~Lq~~l~kye~~~~g~t~qv-dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~n~q~~eEn~ 299 (351)
.+..+..+|=.|...|..|.++..-+.-.+ .+-.++.-|.........-.||+.+||+.=-..|++ .+|+|-. .-.
T Consensus 61 ~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~--~V~~q~~-~ir 137 (390)
T 1deq_A 61 VDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRR--KVIEQVQ-RIN 137 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH--HHHHHhH-HHH
Confidence 447788888899999988888743332222 456667777666666677778888888766555542 3445554 667
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHh-----------------hhccHHHHHHHHHhhhcC
Q 018721 300 RLRAILGEWSTRAAKLERALEVE-----------------RMSNIELQKKISTRRNQH 340 (351)
Q Consensus 300 rlRa~l~Ews~raakle~ale~e-----------------r~~~~~~~~~~~~~r~~~ 340 (351)
+||..|+.=-.-..|||.+.+-- .=++.++||++...+...
T Consensus 138 ~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv~a~~ 195 (390)
T 1deq_A 138 LLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIAIN 195 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHhhhhhc
Confidence 78888888888888888765432 335667788887776543
No 8
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=57.68 E-value=9.8 Score=28.26 Aligned_cols=46 Identities=33% Similarity=0.588 Sum_probs=36.9
Q ss_pred CChhhhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHH
Q 018721 246 STPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAA 313 (351)
Q Consensus 246 ~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~Ews~raa 313 (351)
.+|-||+-..|+.-|..|.+++|| +-+-+-.+||-..|..|..|-|
T Consensus 4 aspavdigdrldelekalealsae----------------------dghddvgqrlesllrrwnsrra 49 (60)
T 1pzq_A 4 ASPAVDIGDRLDELEKALEALSAE----------------------DGHDDVGQRLESLLRRWNSRRA 49 (60)
T ss_dssp CCSCSTTHHHHHHHHHHHHHHTTS----------------------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccchhhHHHHHHHHHHHhccc----------------------ccccHHHHHHHHHHHHHhhccc
Confidence 479999999999889999999988 4455556788888888977754
No 9
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=56.06 E-value=1.2e+02 Score=27.58 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=52.0
Q ss_pred HHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhh-------h-----hhhhhHhHHHHHHHhhhhhhHHHHHHHHH
Q 018721 253 AHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNT-------N-----NQYVEENERLRAILGEWSTRAAKLERALE 320 (351)
Q Consensus 253 ~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~-------n-----~q~~eEn~rlRa~l~Ews~raakle~ale 320 (351)
+.|..+=.+-|..|.+|.+.++.|.+.-.++=..|-+. | ..||.+-++.=--|=-+|+|-|+.|++|+
T Consensus 18 ~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL~ 97 (190)
T 3thf_A 18 DELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSLE 97 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 34444446678889999999999998877763222221 1 26888888888889999999999999997
Q ss_pred H
Q 018721 321 V 321 (351)
Q Consensus 321 ~ 321 (351)
.
T Consensus 98 ~ 98 (190)
T 3thf_A 98 T 98 (190)
T ss_dssp H
T ss_pred c
Confidence 5
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=53.59 E-value=53 Score=36.10 Aligned_cols=27 Identities=7% Similarity=-0.055 Sum_probs=13.7
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhc
Q 018721 38 SIFGSVVYCFVLAGYAILAAGTTWIFH 64 (351)
Q Consensus 38 ~~~g~~~y~~~L~~yA~~~~~~pw~~~ 64 (351)
+++|+-+=-=|-.--..+--..||...
T Consensus 656 ~tv~~~f~~~l~~L~~~l~~t~phfvR 682 (1184)
T 1i84_S 656 RTVGQLYKEQLTKLMTTLRNTNPNFVR 682 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSEEEECC
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 567765433333333445556676443
No 11
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=53.45 E-value=24 Score=29.30 Aligned_cols=49 Identities=29% Similarity=0.359 Sum_probs=41.1
Q ss_pred hhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 018721 292 NQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQH 340 (351)
Q Consensus 292 ~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~~~ 340 (351)
.+..+||.|||..=.+-..|.--||.-+|.=|.-|..|..+-.--|.+-
T Consensus 47 s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~~ 95 (104)
T 3s9g_A 47 SRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQE 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4678899999998888888888899988888889999988877777664
No 12
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=50.84 E-value=1.8e+02 Score=29.90 Aligned_cols=132 Identities=12% Similarity=0.151 Sum_probs=91.2
Q ss_pred CCCCCcccCCCc--hhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCChhh--hHHHhhhhhhhHHHhhHHHH
Q 018721 195 SLEGLRYHDGGR--LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV--DLAHLLAARDQELRTLSAEM 270 (351)
Q Consensus 195 ~~~ElGfrd~g~--LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qv--dl~h~la~r~qelRa~~Ae~ 270 (351)
+.++.|+-=+++ +-. -|-+++....++|=.|...|..|.++-. ++-++ .+-.++.-|.........-.
T Consensus 38 aDeDwGvkCPSGCrLqg-------lL~kqerdv~~rI~kLkn~L~~~s~s~~-~s~~y~~~~~~~lk~~~~q~~dndn~~ 109 (491)
T 1m1j_A 38 VDDDWGTKCPSGCRMQG-------IIDDTDQNYSQRIDNIRQQLADSQNKYK-TSNRVIVETINILKPGLEGAQQLDENY 109 (491)
T ss_dssp CTTSTTTEECCSTTHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCccchhh-------HHHHhhhhHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 346677664443 211 2223466778899999999999988833 22222 55677777777777777888
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHh-----------------hhccHHHHHHH
Q 018721 271 NQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVE-----------------RMSNIELQKKI 333 (351)
Q Consensus 271 ~q~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~e-----------------r~~~~~~~~~~ 333 (351)
||+.+||+.=-.-|+ |.+|+|- .--.=||..|+.=-.-.-|||.+.-.. .=++.++||++
T Consensus 110 ~e~S~eLe~ri~yIK--~kVd~qi-~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~~QKqL 186 (491)
T 1m1j_A 110 GHVSTELRRRIVTLK--QRVATQV-NRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHL 186 (491)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHhhhcHHHHHHHHHHH
Confidence 899999987665554 2344554 333447889999888999999887553 45788999999
Q ss_pred HHhh
Q 018721 334 STRR 337 (351)
Q Consensus 334 ~~~r 337 (351)
.++=
T Consensus 187 eQv~ 190 (491)
T 1m1j_A 187 TQAS 190 (491)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 9883
No 13
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=50.21 E-value=1.1e+02 Score=25.37 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=5.1
Q ss_pred hHHHHHHHhhhhhh
Q 018721 298 NERLRAILGEWSTR 311 (351)
Q Consensus 298 n~rlRa~l~Ews~r 311 (351)
.+++..-+.+...+
T Consensus 99 ~~~~~~~~~~~~~~ 112 (284)
T 1c1g_A 99 LDRAQERLATALQK 112 (284)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=49.94 E-value=15 Score=27.72 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.2
Q ss_pred HHHHHHHhhhhhhhhHhHHHHHHHh
Q 018721 282 SFVLRVRNTNNQYVEENERLRAILG 306 (351)
Q Consensus 282 ~li~~~r~~n~q~~eEn~rlRa~l~ 306 (351)
.++|+.|+.-..-.+||+|||-.+.
T Consensus 22 n~lqh~r~vaaaks~en~rlr~l~k 46 (63)
T 2c9l_Y 22 QLLQHYREVAAAKSSENDRLRLLLK 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHH
Confidence 3568999999999999999997764
No 15
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=47.40 E-value=37 Score=28.45 Aligned_cols=21 Identities=33% Similarity=0.308 Sum_probs=14.0
Q ss_pred hhhhhhhHhHHHHHHHhhhhh
Q 018721 290 TNNQYVEENERLRAILGEWST 310 (351)
Q Consensus 290 ~n~q~~eEn~rlRa~l~Ews~ 310 (351)
..++=.+||++||+-+++-..
T Consensus 62 ~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 62 LRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344456788899988776433
No 16
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=46.41 E-value=64 Score=26.43 Aligned_cols=67 Identities=22% Similarity=0.188 Sum_probs=37.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhhcCCC
Q 018721 269 EMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHGP 342 (351)
Q Consensus 269 e~~q~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~~~~~ 342 (351)
||.+.+.-|..|+.-++.=.-.+-.+.-|..-+=|-|-|=.++++|=+.. +-+++|.|..||.+..+
T Consensus 30 El~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~-------~~el~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 30 ELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQ-------LGELDKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcC
Confidence 66666666666666553323333334444444444444444445554444 45788999999887654
No 17
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=46.36 E-value=11 Score=34.57 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=8.3
Q ss_pred hhhhHhHHHHHHHh
Q 018721 293 QYVEENERLRAILG 306 (351)
Q Consensus 293 q~~eEn~rlRa~l~ 306 (351)
+...||+|||+.|+
T Consensus 47 ~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 47 DLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 33456666666655
No 18
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=45.57 E-value=1.9e+02 Score=29.33 Aligned_cols=62 Identities=23% Similarity=0.140 Sum_probs=31.2
Q ss_pred hhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhhhh----hhhhHhHHHHHHHhhhhhhHHHHHHHH
Q 018721 258 ARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNN----QYVEENERLRAILGEWSTRAAKLERAL 319 (351)
Q Consensus 258 ~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~n~----q~~eEn~rlRa~l~Ews~raakle~al 319 (351)
+-|++.|++-.+.+++++|-...-..|.+.....+ +--+|.+.|.+...+-..+-+.||..+
T Consensus 74 ~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~ 139 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKE 139 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666644332211 000234455555555555555454433
No 19
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=44.43 E-value=66 Score=35.39 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=5.3
Q ss_pred HHHHHHHhhhh
Q 018721 229 ILRLQECLSKY 239 (351)
Q Consensus 229 IL~Lq~~l~ky 239 (351)
+..+|.....|
T Consensus 821 ~~~iQ~~~r~~ 831 (1184)
T 1i84_S 821 IFCIQYNVRSF 831 (1184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455554444
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=44.34 E-value=1.3e+02 Score=24.71 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=11.3
Q ss_pred HHhhHHHHHhHHHHHHHHHHHH
Q 018721 263 LRTLSAEMNQLQSELRLARSFV 284 (351)
Q Consensus 263 lRa~~Ae~~q~~~el~~ar~li 284 (351)
...+.+|+|.++.+|..-+..+
T Consensus 43 ~~~l~~Ek~~L~~qL~~E~~~l 64 (129)
T 2fxo_A 43 MVSLLQEKNDLQLQVQAEQDNL 64 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555544444
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=44.08 E-value=1.4e+02 Score=27.02 Aligned_cols=56 Identities=5% Similarity=0.135 Sum_probs=25.1
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHH
Q 018721 265 TLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALE 320 (351)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale 320 (351)
.+++|++.+..++...+.-+..++..=...-.+-.++..-+.+=+.|..+.+..|.
T Consensus 29 ~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 29 EKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333333333444444444444555555554443
No 22
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=41.13 E-value=31 Score=26.58 Aligned_cols=42 Identities=12% Similarity=0.328 Sum_probs=30.4
Q ss_pred hHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 018721 251 DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNN 292 (351)
Q Consensus 251 dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~n~ 292 (351)
++...+..+|--.+.|.+++++-..|++.-|+.|.+++.+..
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456777788888888989999988888888888877776654
No 23
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=40.90 E-value=2e+02 Score=25.84 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=26.3
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhccc
Q 018721 213 ALLQYQRENLHFLSEEILRLQECLSKYEQS 242 (351)
Q Consensus 213 DLIrYLkdHNa~LSkrIL~Lq~~l~kye~~ 242 (351)
|-|.|-|+--...-.++..|+..+..|..+
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFqes 39 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQEG 39 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899998888999999999999999776
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=40.50 E-value=2.6e+02 Score=30.80 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=7.4
Q ss_pred hHhHHHHHHHhhhhh
Q 018721 296 EENERLRAILGEWST 310 (351)
Q Consensus 296 eEn~rlRa~l~Ews~ 310 (351)
+||+.||..+++=..
T Consensus 1030 ~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1030 EQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555554443
No 25
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=39.84 E-value=6.1 Score=33.40 Aligned_cols=7 Identities=14% Similarity=0.244 Sum_probs=2.9
Q ss_pred ccchhhH
Q 018721 37 HSIFGSV 43 (351)
Q Consensus 37 ~~~~g~~ 43 (351)
-|+.|+.
T Consensus 23 fSlL~~~ 29 (115)
T 2ksd_A 23 FSMLLAL 29 (115)
T ss_dssp SCCSHHH
T ss_pred HHHHHHH
Confidence 3444443
No 26
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=38.37 E-value=24 Score=26.61 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.7
Q ss_pred HHHHHhhhhhhhhHhHHHHHHHhhh
Q 018721 284 VLRVRNTNNQYVEENERLRAILGEW 308 (351)
Q Consensus 284 i~~~r~~n~q~~eEn~rlRa~l~Ew 308 (351)
|+++.-.+.+...|++||++.|.+-
T Consensus 27 v~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 27 IQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4888888999999999999999764
No 27
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=37.78 E-value=40 Score=27.58 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=13.7
Q ss_pred HhHHHHHHHHHHHH-HHHHhhhhhhhhHhHHHHH
Q 018721 271 NQLQSELRLARSFV-LRVRNTNNQYVEENERLRA 303 (351)
Q Consensus 271 ~q~~~el~~ar~li-~~~r~~n~q~~eEn~rlRa 303 (351)
.|||+||..+.+-+ +.|..+-+.-.+|-.+|..
T Consensus 28 hQVQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~ 61 (96)
T 1t3j_A 28 HQVQQEMATTFARLCQQVDMTQKHLEEEIARLSK 61 (96)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666555555 5555555555555544443
No 28
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=37.66 E-value=44 Score=27.14 Aligned_cols=57 Identities=33% Similarity=0.416 Sum_probs=31.6
Q ss_pred hHHHhhhhhhhHHHhhHHHHHhHH---------------HHHHHHHHHH----HHHHhhhhhhhhHhHHHHHHHhh
Q 018721 251 DLAHLLAARDQELRTLSAEMNQLQ---------------SELRLARSFV----LRVRNTNNQYVEENERLRAILGE 307 (351)
Q Consensus 251 dl~h~la~r~qelRa~~Ae~~q~~---------------~el~~ar~li----~~~r~~n~q~~eEn~rlRa~l~E 307 (351)
-|..+|++=.+|.-+++.|.+..+ +|+..-|.-+ +.=+.+.++|.||-.|||+-|+.
T Consensus 11 Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 11 KLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp ------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666665554332 2222222222 44456788999999999999985
No 29
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.43 E-value=58 Score=23.83 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=18.4
Q ss_pred HHHhhHHHHHhHHHHHHHHHHHHH
Q 018721 262 ELRTLSAEMNQLQSELRLARSFVL 285 (351)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~ 285 (351)
.+-.|++..+||++++..+|+.++
T Consensus 12 ~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 12 DAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888665
No 30
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=32.76 E-value=38 Score=26.07 Aligned_cols=42 Identities=24% Similarity=0.231 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 018721 299 ERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQH 340 (351)
Q Consensus 299 ~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~~~ 340 (351)
+.+.+++...-.|..-||..|+...--..+||+++.+++.-.
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777888888888877777777888887776543
No 31
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=32.03 E-value=2e+02 Score=25.36 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=38.8
Q ss_pred hhHhhHHHHHHHHH----HhHHhhHHHHHHHHHhhhhcccCCCCChhhhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHH
Q 018721 207 LSDEQMALLQYQRE----NLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS 282 (351)
Q Consensus 207 LlEKQADLIrYLkd----HNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~ 282 (351)
|.+.|-+=++=+++ ....|-+++...+.++..--.. .+|+ +..++++..|+..+++++...|.
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a---~~~D----------eakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA---SSPD----------TAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---SSCC----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCC----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555544433 2334555666666666332222 2222 34678899999999999988876
Q ss_pred HH
Q 018721 283 FV 284 (351)
Q Consensus 283 li 284 (351)
..
T Consensus 135 k~ 136 (175)
T 3lay_A 135 KR 136 (175)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.52 E-value=2.1e+02 Score=29.77 Aligned_cols=115 Identities=13% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCChhh--hHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Q 018721 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQV--DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQYV 295 (351)
Q Consensus 218 LkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qv--dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~n~q~~ 295 (351)
|-+++.-+.++|=.|..++..|+++ .-++-++ .+-..|..|-..-.....-.+|+.+||+.-..-|+ +.+|+|-
T Consensus 55 LdkqErDltkrINELKnqLEdlsKn-sKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLK--ekVdnQl- 130 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQKN-NKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLK--RKVIEKV- 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHH-HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHH--HHHHHHH-
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH--HHHHHHH-
Q ss_pred hHhHHHHHHHhhhhhhHHHHHHHHHHhhh-----------------ccHHHHHHHHHh
Q 018721 296 EENERLRAILGEWSTRAAKLERALEVERM-----------------SNIELQKKISTR 336 (351)
Q Consensus 296 eEn~rlRa~l~Ews~raakle~ale~er~-----------------~~~~~~~~~~~~ 336 (351)
.--.=||.+|++=-.-..|||.+..+..- +-.++|||+.++
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHH
No 33
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.95 E-value=51 Score=31.06 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=34.8
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018721 298 NERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRN 338 (351)
Q Consensus 298 n~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~ 338 (351)
...|++.++..+.|..||..+|..-|-....|++++.+++.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45688888999999999999999888888888888888876
No 34
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=30.69 E-value=1e+02 Score=28.09 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=24.0
Q ss_pred HHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhhh
Q 018721 252 LAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTN 291 (351)
Q Consensus 252 l~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~n 291 (351)
+...++..+.++..+.+++.+.++++..|+....|.+...
T Consensus 68 ~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~ 107 (369)
T 4dk0_A 68 QINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLY 107 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666666666667777776666665555543
No 35
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.32 E-value=2e+02 Score=22.77 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=11.1
Q ss_pred hhhHhHHHHHHHhhhhhhHH
Q 018721 294 YVEENERLRAILGEWSTRAA 313 (351)
Q Consensus 294 ~~eEn~rlRa~l~Ews~raa 313 (351)
-..||++|+.-..-|..|--
T Consensus 53 L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666655543
No 36
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=29.29 E-value=28 Score=26.12 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=28.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhccccccch
Q 018721 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (351)
Q Consensus 39 ~~g~~~y~~~L~~yA~~~~~~pw~~~~~~~~~~ 71 (351)
++||..||+..-+|.+.-.+.-|-+.|+-...|
T Consensus 18 L~~Ga~FC~a~W~y~~TQ~GIeWnlSPVGrVtP 50 (56)
T 1v54_K 18 LASGATFCVAVWVYMATQIGIEWNPSPVGRVTP 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCCCTTTCCC
T ss_pred eecchhhhHhhHhhhheeeceeeccCcccccCc
Confidence 579999999999999999999999998865554
No 37
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=29.05 E-value=79 Score=28.47 Aligned_cols=69 Identities=10% Similarity=0.127 Sum_probs=45.6
Q ss_pred HHHHHH-HHHHhcCCCCCCchhhhccCCC-CCCCCCCCCcccCCCc----hhHhhHHHHH-HHHHHhHHhhHHHHH
Q 018721 163 MSVYIG-YVHQYNSLNSQPDVMKSLYSPL-QPSSSLEGLRYHDGGR----LSDEQMALLQ-YQRENLHFLSEEILR 231 (351)
Q Consensus 163 li~YIv-kV~rFNk~kp~PDVl~ee~s~~-~ps~~~~ElGfrd~g~----LlEKQADLIr-YLkdHNa~LSkrIL~ 231 (351)
+++||- ...+..+....-|+.++.+.-+ ..-+++||-||-=++- =..+.+|++| ||+|==..++.|++.
T Consensus 71 ltlyi~eCLkkl~~~~~k~ea~k~l~~lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~~RL~e 146 (178)
T 1k8k_E 71 ITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCE 146 (178)
T ss_dssp HHHHHHHHHHHHTSCCSHHHHHHHHHHHHHSCCCCTTSTTCTTTTTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHhhhcCCCCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345665 4566776666667777765443 2346778889886442 2346677776 999988889977763
No 38
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.81 E-value=87 Score=23.97 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=7.5
Q ss_pred hhHHHhhHHHHHhHHH
Q 018721 260 DQELRTLSAEMNQLQS 275 (351)
Q Consensus 260 ~qelRa~~Ae~~q~~~ 275 (351)
++-++.|..++.++..
T Consensus 28 ~~~i~~LE~~v~~le~ 43 (70)
T 1gd2_E 28 EDHLKALETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455544444443
No 39
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=28.50 E-value=2.4e+02 Score=25.38 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=24.3
Q ss_pred HHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhh
Q 018721 252 LAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNT 290 (351)
Q Consensus 252 l~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~ 290 (351)
+..-++.-+.++..+.|++++.++++..|+....|.+.+
T Consensus 67 ~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L 105 (341)
T 3fpp_A 67 AENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRL 105 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445566667777777777777777776555544
No 40
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=28.43 E-value=5.1e+02 Score=26.77 Aligned_cols=126 Identities=12% Similarity=0.200 Sum_probs=70.2
Q ss_pred hhHhhHHHHHHHHHH----hHHhhHHH--HHHHHHhhhhcccCCCCChhhhHHHhhhhhh-hHHHhhHHHHHhHHHHHHH
Q 018721 207 LSDEQMALLQYQREN----LHFLSEEI--LRLQECLSKYEQSDDGSTPQVDLAHLLAARD-QELRTLSAEMNQLQSELRL 279 (351)
Q Consensus 207 LlEKQADLIrYLkdH----Na~LSkrI--L~Lq~~l~kye~~~~g~t~qvdl~h~la~r~-qelRa~~Ae~~q~~~el~~ 279 (351)
..|+++.+|+-..+. |..|..-+ |.|-..+...+. +|..|.+ +.|.-+-|. +.+..+...+++++.-...
T Consensus 376 Y~e~k~~lvr~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~--~~lP~~l-~~~~~~i~~~~g~~~l~~~~~~l~~l~~~ 452 (704)
T 2xs1_A 376 YNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSG--DTVPQSI-LTKSRSVIEQGGIQTVDQLIKELPELLQR 452 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHCSST--TSCCHHH-HHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHhc--CCCCHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 679999999887554 44444332 222334433333 4444432 122222221 2355667777777766666
Q ss_pred HHHHHHHHHhhhhhhhhHhHHHHHHHhh-h------------hhhHHHHHHHHHHhhhccHHHHHHHHH
Q 018721 280 ARSFVLRVRNTNNQYVEENERLRAILGE-W------------STRAAKLERALEVERMSNIELQKKIST 335 (351)
Q Consensus 280 ar~li~~~r~~n~q~~eEn~rlRa~l~E-w------------s~raakle~ale~er~~~~~~~~~~~~ 335 (351)
++..+..+...=+.=.+|.+++|+-.|+ | .....|++..|+.-.=|+..+++++..
T Consensus 453 ~~~~L~e~~~~L~~E~~ed~~~R~k~g~~w~r~~S~~~~~~l~~~~~~~~~~l~~A~~sD~~v~~~~~~ 521 (704)
T 2xs1_A 453 NREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQS 521 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6666655444444444566677776663 4 334556666666666677777776654
No 41
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.42 E-value=48 Score=26.13 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018721 309 STRAAKLERALEVERMSNIELQKKISTRRN 338 (351)
Q Consensus 309 s~raakle~ale~er~~~~~~~~~~~~~r~ 338 (351)
+.|.++||+.+++.+-+..+|+.++..++.
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~ 34 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQLSDNQS 34 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 458888998888877777777666555543
No 42
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=27.61 E-value=73 Score=24.57 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhh
Q 018721 276 ELRLARSFVLRVRNTNNQYVEENERLRAILGE 307 (351)
Q Consensus 276 el~~ar~li~~~r~~n~q~~eEn~rlRa~l~E 307 (351)
=|+.|-.-|+.++..|.+..+|.++||.-..+
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~ 72 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRH 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888888888888777765544
No 43
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=27.60 E-value=2.2e+02 Score=22.35 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=11.6
Q ss_pred hhhhhhHHH-hhHHHHHhHHHHHH
Q 018721 256 LAARDQELR-TLSAEMNQLQSELR 278 (351)
Q Consensus 256 la~r~qelR-a~~Ae~~q~~~el~ 278 (351)
+-|=+.-|| .+..+++|-|+|+.
T Consensus 5 lSAVeDKLRrrl~E~~~q~qaEl~ 28 (78)
T 3iv1_A 5 ISAVSDKLRWRMKEEMDRAQAELN 28 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333344444 55555666665554
No 44
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.56 E-value=9.2e+02 Score=30.23 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=42.3
Q ss_pred hhHHHhhHHHHHhHHHHHHHHHHHH----HHHHhhhhhh---hhHhHHHHHHHhhhh---hhHHHHHHHHHHhhh
Q 018721 260 DQELRTLSAEMNQLQSELRLARSFV----LRVRNTNNQY---VEENERLRAILGEWS---TRAAKLERALEVERM 324 (351)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li----~~~r~~n~q~---~eEn~rlRa~l~Ews---~raakle~ale~er~ 324 (351)
.++|..+.++++..+++|+.++..| .+|...+++| +.|.++|.+.++.=+ .||.||=..|..|+.
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3466677777777777777777776 4455556555 457778877665433 456666666766665
No 45
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=27.49 E-value=3e+02 Score=28.74 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018721 150 IIMLIEAICAASFMSVYIGYVHQYNSL 176 (351)
Q Consensus 150 iil~lElv~~l~~li~YIvkV~rFNk~ 176 (351)
+++.+|+++.+..++.+....+..++.
T Consensus 103 ~ll~~~~~~~~~~l~~~~~~~~~~~r~ 129 (802)
T 4hg6_A 103 LLFAVETFSISIFFLNGFLSADPTDRP 129 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 677888888877777777666666553
No 46
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=27.49 E-value=2.2e+02 Score=22.63 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=30.9
Q ss_pred hhHHH---hhHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhh
Q 018721 260 DQELR---TLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGE 307 (351)
Q Consensus 260 ~qelR---a~~Ae~~q~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~E 307 (351)
|.|.| .++-|++++++....+-|-++.-..-|.--.+|-++|+--|+|
T Consensus 20 eaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 20 EEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666 5677777777777666666666666666666666666665555
No 47
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.37 E-value=4.1e+02 Score=25.34 Aligned_cols=43 Identities=28% Similarity=0.135 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHH
Q 018721 273 LQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKL 315 (351)
Q Consensus 273 ~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~Ews~raakl 315 (351)
.+.|...++......+...++.-|||+|++..++|-....++-
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 3444444555555556666677788888888888876655443
No 48
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.29 E-value=3.2e+02 Score=23.98 Aligned_cols=75 Identities=19% Similarity=0.315 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCChhhhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHh
Q 018721 210 EQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRN 289 (351)
Q Consensus 210 KQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~ 289 (351)
.+.+.|+=|+.+++.|.++|-.|.+.+ ..+...+-.+..|+.-++.|+..+..-+.++..
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel--------------------~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVI--------------------ALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665555544 344444445555666666666555555555554
Q ss_pred hhhhhhhHhHHHHHHHhhhhhhHHH
Q 018721 290 TNNQYVEENERLRAILGEWSTRAAK 314 (351)
Q Consensus 290 ~n~q~~eEn~rlRa~l~Ews~raak 314 (351)
.|+ -| ++-|-.|.++
T Consensus 125 EN~-------~L---V~RWM~rk~q 139 (152)
T 3a7p_A 125 EHS-------QL---VARWLKKTEK 139 (152)
T ss_dssp HHH-------HH---HHHHHHHHHH
T ss_pred HHH-------HH---HHHHHHHHHH
Confidence 443 33 4567666554
No 49
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=27.19 E-value=3.4e+02 Score=26.35 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=33.2
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHh
Q 018721 298 NERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTR 336 (351)
Q Consensus 298 n~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~ 336 (351)
+++|..-|+|=-.--.+||..|+.....+.|+.|+++++
T Consensus 207 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 245 (373)
T 3hhm_B 207 YDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSI 245 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467788888877778899999999999999999998865
No 50
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.35 E-value=1.6e+02 Score=25.02 Aligned_cols=48 Identities=27% Similarity=0.166 Sum_probs=21.1
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHH
Q 018721 266 LSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAA 313 (351)
Q Consensus 266 ~~Ae~~q~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~Ews~raa 313 (351)
|..|..|-|..++--+.+|..+...=+.-.+|-+|||+--.+-+.|.+
T Consensus 62 L~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 62 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 334444444444444444422222222334555666655555555544
No 51
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.94 E-value=3.6e+02 Score=24.17 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=11.2
Q ss_pred HHHhhHHHHHhHHHHHHHHHHHH
Q 018721 262 ELRTLSAEMNQLQSELRLARSFV 284 (351)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li 284 (351)
|+.++..|+..+..+...+...|
T Consensus 91 E~~aL~kEie~~~~~i~~lE~ei 113 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREI 113 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444444444
No 52
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=25.55 E-value=2.2e+02 Score=21.67 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=33.0
Q ss_pred hhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhhh
Q 018721 250 VDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTN 291 (351)
Q Consensus 250 vdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~n 291 (351)
.++-..|++-|..+..+-.--|.++.|||+-.+.||.+-..|
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 377888888888777777777888889998888888776544
No 53
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.82 E-value=1.5e+02 Score=21.48 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=27.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHh
Q 018721 299 ERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTR 336 (351)
Q Consensus 299 ~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~ 336 (351)
..|++-+.-=+.|+.||..+|..-|-.-..|+.++.++
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677777778888888888887776666666666554
No 54
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.17 E-value=3.2e+02 Score=23.00 Aligned_cols=86 Identities=14% Similarity=0.037 Sum_probs=58.8
Q ss_pred hHHHhhhhhhhHHH-------------hhHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHH
Q 018721 251 DLAHLLAARDQELR-------------TLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKLER 317 (351)
Q Consensus 251 dl~h~la~r~qelR-------------a~~Ae~~q~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ 317 (351)
.+|..++.+=.+++ |+=|.+|-. +|+-.++..+..++.......+|...|.--|-+-......++.
T Consensus 32 ~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNia-dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~ 110 (138)
T 3hnw_A 32 RVASYINNKITEFNKEESYRRMSAELRTDMMYLNIA-DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK 110 (138)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666766655555 223334433 3455555556677777777888888888888888888888888
Q ss_pred HHHHhhhccHHHHHHHHHhh
Q 018721 318 ALEVERMSNIELQKKISTRR 337 (351)
Q Consensus 318 ale~er~~~~~~~~~~~~~r 337 (351)
.++.-+-.+-+|++++.++-
T Consensus 111 e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777777663
No 55
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.90 E-value=64 Score=20.79 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=18.1
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhh
Q 018721 215 LQYQRENLHFLSEEILRLQECLS 237 (351)
Q Consensus 215 IrYLkdHNa~LSkrIL~Lq~~l~ 237 (351)
|+-||+.|+.|-++|-.|.-+..
T Consensus 2 irrlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHH
Confidence 67799999999999988865543
No 56
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=23.63 E-value=64 Score=23.46 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=20.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhh
Q 018721 299 ERLRAILGEWSTRAAKLERALEVER 323 (351)
Q Consensus 299 ~rlRa~l~Ews~raakle~ale~er 323 (351)
+.=|++|+||..=-++-+..|+.||
T Consensus 15 e~RRrlLeEW~awRa~~~~~L~eer 39 (50)
T 3zwl_E 15 LHQRELLKQWTEYREKIGQEMEKSM 39 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458899999998888888887776
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.58 E-value=4.9e+02 Score=24.84 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=21.3
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhh
Q 018721 265 TLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGE 307 (351)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~E 307 (351)
....|+++..++.+..+..|++++..|+-...|.+-+-..+.|
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 3444444445555555555555555555555554444444433
No 58
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.22 E-value=4.3e+02 Score=26.10 Aligned_cols=66 Identities=26% Similarity=0.228 Sum_probs=36.7
Q ss_pred hhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHH
Q 018721 250 VDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERAL 319 (351)
Q Consensus 250 vdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~al 319 (351)
+|+..-+-+-|++-|++-.+.+++++|-...-..|.+..... ++.+.|.+...+=+.+-+.||..+
T Consensus 27 ~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~ 92 (455)
T 2dq0_A 27 VKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG----EPVDELLAKSREIVKRIGELENEV 92 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC----CCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 453344445567777777777777777777777775543332 334445444444444444444433
No 59
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.99 E-value=2.1e+02 Score=22.49 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=39.6
Q ss_pred HHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 018721 285 LRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQH 340 (351)
Q Consensus 285 ~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~~~ 340 (351)
.++|...+|+-.|-+-||.+=+|--.=-.||+.-++.=---..+++|+|..++...
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777888888888877777777777777765544444567888888777643
No 60
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.87 E-value=44 Score=34.17 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=11.1
Q ss_pred hHHhhHHHHHHHHHhhhhcccCCCCChhhhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHhHHH
Q 018721 222 LHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERL 301 (351)
Q Consensus 222 Na~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~n~q~~eEn~rl 301 (351)
...+-++.-+.++.|.+++.+. .+| +.+++-...|...|..+...|...+++++.....-.+|.++|
T Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~----------~~l---~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l 410 (575)
T 2i1j_A 344 LRQMQEEMERSQANLLEAQDMI----------LRL---EEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKL 410 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHH----------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344455555555665555552 122 223333334444444444555555566666666666666666
Q ss_pred HHHHhhhhhhHHHHHH
Q 018721 302 RAILGEWSTRAAKLER 317 (351)
Q Consensus 302 Ra~l~Ews~raakle~ 317 (351)
.+-+.|-..-+++|+.
T Consensus 411 ~~~~~~~~~~~~~~~~ 426 (575)
T 2i1j_A 411 EDEIRAKQEEVSRIQQ 426 (575)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666665555543
No 61
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=22.45 E-value=2.1e+02 Score=26.48 Aligned_cols=20 Identities=5% Similarity=0.394 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 018721 156 AICAASFMSVYIGYVHQYNS 175 (351)
Q Consensus 156 lv~~l~~li~YIvkV~rFNk 175 (351)
.++.+|.++++++=..+|.+
T Consensus 151 t~vliPv~i~F~~Fa~hFYr 170 (214)
T 4hkr_A 151 TVVLIPVMIIFMAFAIHFYR 170 (214)
T ss_dssp HHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36679999999998888877
No 62
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.16 E-value=62 Score=23.16 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHhHHhhHHH
Q 018721 211 QMALLQYQRENLHFLSEEI 229 (351)
Q Consensus 211 QADLIrYLkdHNa~LSkrI 229 (351)
..|+|.||....+.|-++|
T Consensus 29 kkdliaylekeianlrkki 47 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3588999988888887776
No 63
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.73 E-value=2e+02 Score=22.38 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=23.1
Q ss_pred hHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhh
Q 018721 251 DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNT 290 (351)
Q Consensus 251 dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~ 290 (351)
||.-+|-.++.|+|.--+-+..+..+|..=.++|+.++..
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666655555555555555555555555443
No 64
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.43 E-value=90 Score=26.89 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=11.8
Q ss_pred hhhccHHHHHHHHHhhhcCCC
Q 018721 322 ERMSNIELQKKISTRRNQHGP 342 (351)
Q Consensus 322 er~~~~~~~~~~~~~r~~~~~ 342 (351)
+|.....+.++..+++.+.++
T Consensus 94 ar~~~~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 94 ARMEKYAIEILNKRLTEQLRE 114 (135)
T ss_dssp TTHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666655533
No 65
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=21.41 E-value=3e+02 Score=22.38 Aligned_cols=42 Identities=26% Similarity=0.368 Sum_probs=32.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhh
Q 018721 266 LSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGE 307 (351)
Q Consensus 266 ~~Ae~~q~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~E 307 (351)
--||-.++-++|..|+++..+-+..+++--+=.++||.-|||
T Consensus 55 ~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 55 LLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346667777888888888877777777766777889988887
No 66
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=21.21 E-value=46 Score=26.53 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=28.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhccccccch
Q 018721 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (351)
Q Consensus 39 ~~g~~~y~~~L~~yA~~~~~~pw~~~~~~~~~~ 71 (351)
++||+.||+..-+|.+.-.+.-|-+.|+-...|
T Consensus 42 L~~Ga~FC~a~W~y~~TQ~GIeWnlSPVGrVtP 74 (80)
T 2y69_K 42 LASGATFCVAVWVYMATQIGIEWNPSPVGRVTP 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCCCTTTCCC
T ss_pred eecchhHHHhhHHHhheecceeecCCcccccCc
Confidence 579999999999999999999999998855554
No 67
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.29 E-value=1.6e+02 Score=24.12 Aligned_cols=75 Identities=13% Similarity=0.238 Sum_probs=41.2
Q ss_pred hhHHHhhHHHHHhHHHHHHHHHHHH----HHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHH
Q 018721 260 DQELRTLSAEMNQLQSELRLARSFV----LRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKIST 335 (351)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li----~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~ 335 (351)
+++++.+-+.++.+..|=...-..| ..+......|.+|.. +|..++ .--..|=.-+..+-|+.++|..++..
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~-~r~~~E---~di~~lrK~lD~~~l~r~dLE~~ies 94 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML-QREEAE---NTLQSFRQDVDNASLARLDLERKVES 94 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHH---HHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 4455555555555555433333333 223334445655542 343332 12233445667778889999999998
Q ss_pred hhh
Q 018721 336 RRN 338 (351)
Q Consensus 336 ~r~ 338 (351)
|+.
T Consensus 95 L~e 97 (119)
T 3ol1_A 95 LQE 97 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 68
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.02 E-value=4.9e+02 Score=26.32 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=28.7
Q ss_pred hhHHHhhHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHH
Q 018721 260 DQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERA 318 (351)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~a 318 (351)
|++.|++-.|.+++++|-...-..|.+..... ++.+-|.+.+.+-..+-+.||..
T Consensus 39 d~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~----~~~~~l~~~~~~l~~~i~~le~~ 93 (485)
T 3qne_A 39 YKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAK----EDAKDLIAEKEKLSNEKKEIIEK 93 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677777766666666664443322 22334444444444444444433
Done!