Query 018721
Match_columns 351
No_of_seqs 73 out of 75
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 05:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018721.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018721hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pzqa_ a.34.3.1 (A:) Erythron 62.3 3.4 0.00025 29.3 3.5 48 244-313 2-49 (60)
2 d2e74e1 f.23.24.1 (E:1-32) Pet 52.3 5.9 0.00043 24.7 3.0 28 39-66 2-29 (32)
3 d1st6a5 a.24.9.1 (A:489-646) V 48.1 36 0.0026 27.8 8.3 85 218-315 49-155 (158)
4 d1uklc_ a.38.1.1 (C:) SREBP-2 36.9 29 0.0021 23.5 5.1 36 203-238 23-58 (61)
5 d1st6a4 a.24.9.1 (A:372-488) V 30.0 36 0.0027 26.7 5.2 34 217-250 55-88 (117)
6 d1jb0i_ f.23.17.1 (I:) Subunit 28.4 7.8 0.00057 25.3 0.7 18 56-73 7-24 (38)
7 d1qvra2 c.37.1.20 (A:149-535) 23.9 2.3E+02 0.017 25.0 10.9 156 166-339 196-362 (387)
8 d1am9a_ a.38.1.1 (A:) SREBP-1a 15.8 90 0.0066 21.7 4.5 36 206-241 43-78 (80)
9 d1st6a3 a.24.9.1 (A:253-371) V 15.1 1.4E+02 0.011 23.0 5.9 31 220-250 67-97 (119)
10 d1v54k_ f.23.5.1 (K:) Mitochon 14.5 41 0.003 22.8 2.0 33 39-71 13-45 (49)
No 1
>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=62.28 E-value=3.4 Score=29.27 Aligned_cols=48 Identities=31% Similarity=0.570 Sum_probs=38.4
Q ss_pred CCCChhhhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHH
Q 018721 244 DGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAA 313 (351)
Q Consensus 244 ~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~Ews~raa 313 (351)
..+.|.||+-..|+-=|.-|-|+++| +-+-+-.+||-+.|..|..|-+
T Consensus 2 sa~~p~v~ig~rld~le~al~al~~~----------------------~gh~dvg~rle~llrrw~srr~ 49 (60)
T d1pzqa_ 2 SAASPAVDIGDRLDELEKALEALSAE----------------------DGHDDVGQRLESLLRRWNSRRA 49 (60)
T ss_dssp CSCCSCSTTHHHHHHHHHHHHHHTTS----------------------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCcchhhhHHHHHHHHHhcchh----------------------hcccHHHHHHHHHHHHHhccCC
Confidence 34689999999999888888899887 3455567889999999987743
No 2
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=52.28 E-value=5.9 Score=24.72 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=22.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhccc
Q 018721 39 IFGSVVYCFVLAGYAILAAGTTWIFHPI 66 (351)
Q Consensus 39 ~~g~~~y~~~L~~yA~~~~~~pw~~~~~ 66 (351)
+.|+++|.+..+-|-+.+++.-|+...+
T Consensus 2 ilgavfyivfialffgiavgiifaiksi 29 (32)
T d2e74e1 2 ILGAVFYIVFIALFFGIAVGIIFAIKSI 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeeeHHHHHHHHHHHHHhhheeeEEEE
Confidence 6799999999998888888877766554
No 3
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=48.06 E-value=36 Score=27.84 Aligned_cols=85 Identities=16% Similarity=0.278 Sum_probs=55.5
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCChhh-hHHHhhhhhhhHHHhhHHHHHhHHHHHHHHH------H--------
Q 018721 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQV-DLAHLLAARDQELRTLSAEMNQLQSELRLAR------S-------- 282 (351)
Q Consensus 218 LkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qv-dl~h~la~r~qelRa~~Ae~~q~~~el~~ar------~-------- 282 (351)
.|++.-.+-.+|-+|..+|+...+.+-|.||+- +++-- ++..++.|++-++.|= +
T Consensus 49 ~r~~Il~~C~el~~l~~~LadLr~~G~G~sPeA~~lA~q----------i~~kL~dL~~~v~~Avv~~v~d~f~dt~tpl 118 (158)
T d1st6a5 49 YRQDLLAKCDRVDQLAAQLADLAARGEGESPQARAIAAQ----------LQDSLKDLKARMQEAMTQEVSDVFSDTTTPI 118 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSTTSSCCSSHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHSSCSSHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 367778888899999999999999999999986 33433 3333444444443332 1
Q ss_pred --HHHHHHh-----hhhhhhhHhHHHHHHHhhhhhhHHHH
Q 018721 283 --FVLRVRN-----TNNQYVEENERLRAILGEWSTRAAKL 315 (351)
Q Consensus 283 --li~~~r~-----~n~q~~eEn~rlRa~l~Ews~raakl 315 (351)
+|..... .+.+=.+|+.+ .+.+++.|.++.
T Consensus 119 ~~l~~Aa~a~~~~p~re~~~~e~a~---~f~~~a~~~~~~ 155 (158)
T d1st6a5 119 KLLAVAATAPSDTPNREEVFEERAA---NFENHAARLGAT 155 (158)
T ss_dssp HHHHHHHHSCSCSSCHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCccHHHHHHHH---HHHHHHHHHHHH
Confidence 1233443 34466666664 788888888764
No 4
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.92 E-value=29 Score=23.48 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=31.8
Q ss_pred CCCchhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhh
Q 018721 203 DGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSK 238 (351)
Q Consensus 203 d~g~LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~k 238 (351)
+...++++=.|-|++|+..+..|.++...|+.+..+
T Consensus 23 ~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 58 (61)
T d1uklc_ 23 HKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQK 58 (61)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445699999999999999999999999999988754
No 5
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=30.01 E-value=36 Score=26.67 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=28.6
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCChhh
Q 018721 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV 250 (351)
Q Consensus 217 YLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qv 250 (351)
+.++..-.+-.+|=.|..+|+.+.+.+-|.||+-
T Consensus 55 ~~r~~il~lc~ei~~lt~qLadLr~~GkG~sPeA 88 (117)
T d1st6a4 55 KERDDILRSLGEISALTAKLSDLRRHGKGDSPEA 88 (117)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 4566666777888899999999999999999984
No 6
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=28.43 E-value=7.8 Score=25.32 Aligned_cols=18 Identities=33% Similarity=0.635 Sum_probs=12.3
Q ss_pred HHhhhhhhccccccchhH
Q 018721 56 AAGTTWIFHPIHYLIPPL 73 (351)
Q Consensus 56 ~~~~pw~~~~~~~~~~~l 73 (351)
+...||||.|+-...-|.
T Consensus 7 AsyLPwI~iPvv~wl~p~ 24 (38)
T d1jb0i_ 7 ASFLPWIFIPVVCWLMPT 24 (38)
T ss_dssp TTTHHHHHHHHHHTHHHH
T ss_pred HHhcchhHHHHHHHHHHH
Confidence 567899999865444444
No 7
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=23.91 E-value=2.3e+02 Score=25.04 Aligned_cols=156 Identities=18% Similarity=0.246 Sum_probs=86.9
Q ss_pred HHHHHHHhcCCCCCCchhhhccCCCCCCCCCCCCcccCCCchhHhhHHHHHHHH-----------HHhHHhhHHHHHHHH
Q 018721 166 YIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQR-----------ENLHFLSEEILRLQE 234 (351)
Q Consensus 166 YIvkV~rFNk~kp~PDVl~ee~s~~~ps~~~~ElGfrd~g~LlEKQADLIrYLk-----------dHNa~LSkrIL~Lq~ 234 (351)
...+.-+|+.-+..||++..-..-+ + +|-....+=+|=-|+|.--+ +-.-.+-+++..+..
T Consensus 196 ~~~~~e~~h~v~~~~~ai~~~v~ls-------~-ryi~~r~~PdKAidlld~a~a~~~i~~~s~P~el~~ler~I~qLe~ 267 (387)
T d1qvra2 196 LKEKYEVHHGVRISDSAIIAAATLS-------H-RYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEI 267 (387)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHHH-------H-HHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCcccHHHHHHHHHhc-------c-cccccccChhhHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH
Confidence 3456677888888888887752210 0 12221222233333333111 123456677888877
Q ss_pred HhhhhcccCCCCChhhhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHH
Q 018721 235 CLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAK 314 (351)
Q Consensus 235 ~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~Ews~raak 314 (351)
+...-.+..+ .|-...+..-+.++-.+..+.+++.++-..-+..+..++..+.+- +.+|.-++. ..|...
T Consensus 268 E~~aL~ke~d-----~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~L----e~lr~~le~-A~r~gd 337 (387)
T d1qvra2 268 EREALKKEKD-----PDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRL----DEVRREIEL-AERQYD 337 (387)
T ss_dssp HHHHHSSCSS-----HHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-HTTTTC
T ss_pred HHHHHHhccc-----hHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-HHHccc
Confidence 7755555422 344455555566777777777777777777777776666655442 444444432 345566
Q ss_pred HHHHHHHhhhccHHHHHHHHHhhhc
Q 018721 315 LERALEVERMSNIELQKKISTRRNQ 339 (351)
Q Consensus 315 le~ale~er~~~~~~~~~~~~~r~~ 339 (351)
+|++-|-.--.-.++++++.++..+
T Consensus 338 ~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 338 LNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHH
Confidence 6666554433345677777766544
No 8
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.82 E-value=90 Score=21.71 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=32.3
Q ss_pred chhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcc
Q 018721 206 RLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQ 241 (351)
Q Consensus 206 ~LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~ 241 (351)
.++++=.+.|.+|++.+..|.++...|+..+.+.+.
T Consensus 43 ~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~~~~~~ 78 (80)
T d1am9a_ 43 AVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKS 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 499999999999999999999999999988876543
No 9
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=15.09 E-value=1.4e+02 Score=23.02 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=24.9
Q ss_pred HHhHHhhHHHHHHHHHhhhhcccCCCCChhh
Q 018721 220 ENLHFLSEEILRLQECLSKYEQSDDGSTPQV 250 (351)
Q Consensus 220 dHNa~LSkrIL~Lq~~l~kye~~~~g~t~qv 250 (351)
+.+-.+-.+|=.|..+|+...+.+-|.||+-
T Consensus 67 ~~Il~~c~ei~~lt~qLadLr~~G~G~sPeA 97 (119)
T d1st6a3 67 REILGTCKTLGQMTDQLADLRARGQGATPMA 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 4445556677788899999999999999984
No 10
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.50 E-value=41 Score=22.85 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhccccccch
Q 018721 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (351)
Q Consensus 39 ~~g~~~y~~~L~~yA~~~~~~pw~~~~~~~~~~ 71 (351)
++||..||+-.-+|.+.-.+.-|-+.|+-...|
T Consensus 13 L~~Ga~fc~avW~yv~TQ~gI~WnlSPVGrVtP 45 (49)
T d1v54k_ 13 LASGATFCVAVWVYMATQIGIEWNPSPVGRVTP 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCCCTTTCCC
T ss_pred Eecccchhhhhhhheeeeeeeeecccccccccc
Confidence 578999999999999999999999888755444
Done!