BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018722
         (351 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GLF|A Chain A, Crystal Structure Of Aminipeptidase (m18 Family) From
           Thermotoga Maritima
 pdb|2GLF|B Chain B, Crystal Structure Of Aminipeptidase (m18 Family) From
           Thermotoga Maritima
 pdb|2GLF|C Chain C, Crystal Structure Of Aminipeptidase (m18 Family) From
           Thermotoga Maritima
 pdb|2GLF|D Chain D, Crystal Structure Of Aminipeptidase (m18 Family) From
           Thermotoga Maritima
          Length = 450

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 8   TCFSLILFLNCLALKPLPPWA-RPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPS 66
           T   +   L+     PL  +A  P    + ++   K I+ F +   LK  LN+    I S
Sbjct: 36  TVKEIKRILDESGFVPLEDFAGDPXNXTVYAVNRGKAIAAFRVVDDLKRGLNLVVAHIDS 95

Query: 67  PKLSFK 72
           P+L FK
Sbjct: 96  PRLDFK 101


>pdb|3KUF|A Chain A, The Crystal Structure Of The Tudor Domains From Fxr1
 pdb|3O8V|A Chain A, Crystal Structure Of The Tudor Domains From Fxr1
          Length = 131

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 17/92 (18%)

Query: 234 GHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHI 293
           G  G     +  ++  D  T  F+  + P        E  VP+  +R  P    P D+  
Sbjct: 9   GSNGAFYKGFIKDVHEDSLTVVFENNWQP--------ERQVPFNEVRLPP----PPDIK- 55

Query: 294 SDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVV 325
                ++  GD +E+  R N + P GWW   V
Sbjct: 56  ----KEISEGDEVEVYSRANDQEPCGWWLAKV 83


>pdb|4IL2|A Chain A, Crystal Structure Of D-mannonate Dehydratase (rspa) From
           E. Coli Cft073 (efi Target Efi-501585)
 pdb|4IL2|B Chain B, Crystal Structure Of D-mannonate Dehydratase (rspa) From
           E. Coli Cft073 (efi Target Efi-501585)
 pdb|4IL2|C Chain C, Crystal Structure Of D-mannonate Dehydratase (rspa) From
           E. Coli Cft073 (efi Target Efi-501585)
 pdb|4IL2|D Chain D, Crystal Structure Of D-mannonate Dehydratase (rspa) From
           E. Coli Cft073 (efi Target Efi-501585)
          Length = 426

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 237 GFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVP 275
           G M+ C+    S D++ D + AR+   G + I ++CG+P
Sbjct: 138 GVMVYCHTTGHSIDEALDDY-ARHQELGFKAIRVQCGIP 175


>pdb|4E4F|A Chain A, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
           From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
 pdb|4E4F|B Chain B, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
           From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
 pdb|4E4F|C Chain C, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
           From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
 pdb|4E4F|D Chain D, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
           From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
          Length = 426

 Score = 28.5 bits (62), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 236 VGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVP 275
            G M+ C+    S D+  D + A++   G + I ++CGVP
Sbjct: 137 TGVMVYCHTTGHSIDEVLDDY-AKHRDQGFKAIRVQCGVP 175


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.461 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,026,776
Number of Sequences: 62578
Number of extensions: 452522
Number of successful extensions: 748
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 6
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)