BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018724
         (351 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Yersinia Pestis Co92
 pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Yersinia Pestis Co92
          Length = 346

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 218 EKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATSWG 255
           ++ L+T A ++   IDP K+ +F Q   P+H+   SW 
Sbjct: 70  KRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQ-LSWA 106


>pdb|2OL2|A Chain A, High Resolution Structure Of Native Pci In Space Group P21
 pdb|2OL2|B Chain B, High Resolution Structure Of Native Pci In Space Group P21
 pdb|3B9F|I Chain I, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
          Length = 395

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 114 MLHKAVPESKYQLTRV----GDLSTFTFLRFNTQVMFSRKPFLVDLV 156
           M+HKAV E     TR     G + TF   R N+Q +   +PFL+ +V
Sbjct: 336 MVHKAVVEVDESGTRAAAATGTIFTFRSARLNSQRLVFNRPFLMFIV 382


>pdb|2HI9|A Chain A, Crystal Structure Of Human Native Protein C Inhibitor
 pdb|2HI9|B Chain B, Crystal Structure Of Human Native Protein C Inhibitor
 pdb|2HI9|C Chain C, Crystal Structure Of Human Native Protein C Inhibitor
          Length = 363

 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 114 MLHKAVPESKYQLTRV----GDLSTFTFLRFNTQVMFSRKPFLVDLV 156
           M+HKAV E     TR     G + TF   R N+Q +   +PFL+ +V
Sbjct: 304 MVHKAVVEVDESGTRAAAATGTIFTFRSARLNSQRLVFNRPFLMFIV 350


>pdb|1HDM|B Chain B, Histocompatibility Antigen Hla-Dm
          Length = 193

 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 203 DGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNA--TSWGHSNAT 260
           D + T +D    ++F K L T     +  + P  +      V   H N   T     N  
Sbjct: 14  DDAGTPKDFTYCISFNKDLLTCWDPEENKMAPCNS---LANVLSQHLNQKDTLMQRLNGL 70

Query: 261 KDCREETQPFIGHKYRRGSPAAELVVEKVISNMSKPVHL 299
           ++C   TQPF G    R  P +  V +    N  +PV L
Sbjct: 71  QNCATHTQPFWGSLTNRTRPPSVQVAKTTPFNTREPVML 109


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,244,795
Number of Sequences: 62578
Number of extensions: 484596
Number of successful extensions: 978
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 975
Number of HSP's gapped (non-prelim): 9
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)