BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018724
(351 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2SZZ0|HTPG_BURTA Chaperone protein HtpG OS=Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 / CIP 106301) GN=htpG PE=3 SV=1
Length = 632
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 194 RKQEWDYIEDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATS 253
+K+EWD E G +D + V AL T AK +++ + K FYQ V+ DH + +
Sbjct: 210 KKEEWDQ-EKGEMVEKDEDETVNQASALWTRAK---SDVTEEQYKQFYQHVAHDHQDPLA 265
Query: 254 WGHS 257
W H+
Sbjct: 266 WTHN 269
>sp|Q9BVV6|TALD3_HUMAN Protein TALPID3 OS=Homo sapiens GN=KIAA0586 PE=1 SV=4
Length = 1533
Score = 34.7 bits (78), Expect = 1.0, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 207 TMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATSWGHSNATKDCREE 266
T R+M+ + K ++ W K + A I ++ Y+ D N + N TKD R
Sbjct: 511 TNREMSEKIRIRKTVDEWIKTISAEIQDELSRTDYEQKRFDQKNQRTKKGQNMTKDIRTN 570
Query: 267 TQ 268
TQ
Sbjct: 571 TQ 572
>sp|Q58966|Y1571_METJA Uncharacterized protein MJ1571 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1571 PE=3 SV=1
Length = 292
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 14/72 (19%)
Query: 107 QWQSLTCMLHK-AVPESKYQLTRVGDLSTFTFLRFNTQVMFSRKPFLVDLVKTSAGRVLK 165
QW +T +HK VPE +T + F L F +M+SRK +V+ K
Sbjct: 168 QWNKVTSAIHKLGVPEVVITITNLAYRYIFLLLNFVLDMMYSRKSRVVN----------K 217
Query: 166 LGSTESGALWKD 177
LG ES WK+
Sbjct: 218 LGMVES---WKE 226
>sp|A0K9C0|HTPG_BURCH Chaperone protein HtpG OS=Burkholderia cenocepacia (strain HI2424)
GN=htpG PE=3 SV=1
Length = 632
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 194 RKQEWDYIEDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATS 253
RK+EWD E G ++D + V AL T +K +++ + FYQ ++ DH + +
Sbjct: 210 RKEEWDQ-EKGEMVLKDEDETVNQASALWTRSK---SDVTDEQYTQFYQHIAHDHQDPLT 265
Query: 254 WGHS 257
W H+
Sbjct: 266 WTHN 269
>sp|Q1BUR7|HTPG_BURCA Chaperone protein HtpG OS=Burkholderia cenocepacia (strain AU 1054)
GN=htpG PE=3 SV=1
Length = 632
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 194 RKQEWDYIEDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATS 253
RK+EWD E G ++D + V AL T +K +++ + FYQ ++ DH + +
Sbjct: 210 RKEEWDQ-EKGEMVLKDEDETVNQASALWTRSK---SDVTDEQYTQFYQHIAHDHQDPLT 265
Query: 254 WGHS 257
W H+
Sbjct: 266 WTHN 269
>sp|Q63W07|HTPG_BURPS Chaperone protein HtpG OS=Burkholderia pseudomallei (strain K96243)
GN=htpG PE=3 SV=1
Length = 632
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 194 RKQEWDYIEDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATS 253
+K+EWD E G +D + + AL T AK + + + K FYQ V+ DH + +
Sbjct: 210 KKEEWDQ-EKGEMVEKDEDETINQASALWTRAK---SEVTDEQYKQFYQHVAHDHQDPLA 265
Query: 254 WGHS 257
W H+
Sbjct: 266 WTHN 269
>sp|Q3JUM5|HTPG_BURP1 Chaperone protein HtpG OS=Burkholderia pseudomallei (strain 1710b)
GN=htpG PE=3 SV=1
Length = 632
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 194 RKQEWDYIEDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATS 253
+K+EWD E G +D + + AL T AK + + + K FYQ V+ DH + +
Sbjct: 210 KKEEWDQ-EKGEMVEKDEDETINQASALWTRAK---SEVTDEQYKQFYQHVAHDHQDPLA 265
Query: 254 WGHS 257
W H+
Sbjct: 266 WTHN 269
>sp|A3NSX5|HTPG_BURP0 Chaperone protein HtpG OS=Burkholderia pseudomallei (strain 1106a)
GN=htpG PE=3 SV=1
Length = 632
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 194 RKQEWDYIEDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATS 253
+K+EWD E G +D + + AL T AK + + + K FYQ V+ DH + +
Sbjct: 210 KKEEWDQ-EKGEMVEKDEDETINQASALWTRAK---SEVTDEQYKQFYQHVAHDHQDPLA 265
Query: 254 WGHS 257
W H+
Sbjct: 266 WTHN 269
>sp|A1V292|HTPG_BURMS Chaperone protein HtpG OS=Burkholderia mallei (strain SAVP1)
GN=htpG PE=3 SV=1
Length = 632
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 194 RKQEWDYIEDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATS 253
+K+EWD E G +D + + AL T AK + + + K FYQ V+ DH + +
Sbjct: 210 KKEEWDQ-EKGEMVEKDEDETINQASALWTRAK---SEVTDEQYKQFYQHVAHDHQDPLA 265
Query: 254 WGHS 257
W H+
Sbjct: 266 WTHN 269
>sp|Q62ID1|HTPG_BURMA Chaperone protein HtpG OS=Burkholderia mallei (strain ATCC 23344)
GN=htpG PE=3 SV=1
Length = 632
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 194 RKQEWDYIEDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATS 253
+K+EWD E G +D + + AL T AK + + + K FYQ V+ DH + +
Sbjct: 210 KKEEWDQ-EKGEMVEKDEDETINQASALWTRAK---SEVTDEQYKQFYQHVAHDHQDPLA 265
Query: 254 WGHS 257
W H+
Sbjct: 266 WTHN 269
>sp|A2S4I0|HTPG_BURM9 Chaperone protein HtpG OS=Burkholderia mallei (strain NCTC 10229)
GN=htpG PE=3 SV=1
Length = 632
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 194 RKQEWDYIEDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATS 253
+K+EWD E G +D + + AL T AK + + + K FYQ V+ DH + +
Sbjct: 210 KKEEWDQ-EKGEMVEKDEDETINQASALWTRAK---SEVTDEQYKQFYQHVAHDHQDPLA 265
Query: 254 WGHS 257
W H+
Sbjct: 266 WTHN 269
>sp|A3MHX8|HTPG_BURM7 Chaperone protein HtpG OS=Burkholderia mallei (strain NCTC 10247)
GN=htpG PE=3 SV=1
Length = 632
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 194 RKQEWDYIEDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATS 253
+K+EWD E G +D + + AL T AK + + + K FYQ V+ DH + +
Sbjct: 210 KKEEWDQ-EKGEMVEKDEDETINQASALWTRAK---SEVTDEQYKQFYQHVAHDHQDPLA 265
Query: 254 WGHS 257
W H+
Sbjct: 266 WTHN 269
>sp|A3N786|HTPG_BURP6 Chaperone protein HtpG OS=Burkholderia pseudomallei (strain 668)
GN=htpG PE=3 SV=1
Length = 632
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 194 RKQEWDYIEDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATS 253
+K+EWD E G +D + + AL T AK + + + K FYQ V+ DH + +
Sbjct: 210 KKEEWDQ-EKGEMVEKDEDETINQASALWTRAK---SEVTDEQYKQFYQHVAHDHQDPLA 265
Query: 254 WGHS 257
W H+
Sbjct: 266 WTHN 269
>sp|Q0BD34|HTPG_BURCM Chaperone protein HtpG OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=htpG PE=3 SV=1
Length = 632
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 194 RKQEWDYIEDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATS 253
+K+EWD E G ++D + V AL T +K ++I + FYQ V+ DH + +
Sbjct: 210 QKEEWDQ-EKGEMVLKDEDETVNQASALWTRSK---SDITDEQYTQFYQHVAHDHQDPLT 265
Query: 254 WGHS 257
W H+
Sbjct: 266 WTHN 269
>sp|Q8UED2|SYY_AGRT5 Tyrosine--tRNA ligase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=tyrS PE=3 SV=1
Length = 417
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 3/36 (8%)
Query: 155 LVKTSAGRVLKLGSTESGALWKDKDVL-IFNTWHWW 189
L+ TS+G K+G + SGA+W +KD+L +++ W +W
Sbjct: 228 LLTTSSGA--KMGKSASGAVWLNKDLLPVYDFWQYW 261
>sp|Q142T5|HTPG_BURXL Chaperone protein HtpG OS=Burkholderia xenovorans (strain LB400)
GN=htpG PE=3 SV=1
Length = 634
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 194 RKQEWDYIEDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATS 253
+K+EWD E + +D + V AL T +K ++I + K FYQ +S DH + +
Sbjct: 210 KKEEWD-AEKSAMVTKDEDETVNQASALWTRSK---SDITDEQYKQFYQHLSHDHQDPLT 265
Query: 254 WGHS 257
W H+
Sbjct: 266 WTHN 269
>sp|P25285|GCST_BOVIN Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1
SV=1
Length = 397
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 11/166 (6%)
Query: 86 DFLLRHQGKSILFVGDSLSLNQWQS-LTCMLHKAVPESKYQLTRVGDLSTFTFLRFNTQV 144
DF L H GK + F G SL + S + LH S + ++ + L T F ++
Sbjct: 34 DFHLAHGGKMVAFAGWSLPVQYRDSHVNSHLHTRQHCSLFDVSHM--LQTKIFGCDRVKL 91
Query: 145 MFSRKPFLVDLVKTSAGRVLKLGSTESGALWKDKDVLIFNTWHWWLHSG---RKQEWDYI 201
M S + +K + G L L + E+G + D V + H ++ S R+++ +
Sbjct: 92 MESLVVGDIAELKPNQG-TLSLFTNEAGGILDDLIVTSASEGHLYVVSNAGCREKDLTLM 150
Query: 202 EDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPD 247
+D R +++ VA E N A PT +V GV+ D
Sbjct: 151 QDKVRELQNKGSDVALEVMDNALL----ALQGPTAAQVLQAGVADD 192
>sp|A7INU9|SYY_XANP2 Tyrosine--tRNA ligase OS=Xanthobacter autotrophicus (strain ATCC
BAA-1158 / Py2) GN=tyrS PE=3 SV=1
Length = 416
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 155 LVKTSAGRVLKLGSTESGALWKDKDVLI-FNTWHWWLHSGRKQEWDYIEDGSRT-MRDMN 212
L+ TS+G K+G T GA+W D D+L + W +W ++G +++ + + ++
Sbjct: 227 LLTTSSGA--KMGKTAGGAVWLDADLLSPYEYWQYWRNAGDADVERFLKLFTELPLDEIA 284
Query: 213 RLVAFEKALNTWAKWVDAN 231
RL A E AK V A
Sbjct: 285 RLAALEGQEINHAKEVLAT 303
>sp|Q39E36|HTPG_BURS3 Chaperone protein HtpG OS=Burkholderia sp. (strain 383) GN=htpG
PE=3 SV=1
Length = 632
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 194 RKQEWDYIEDGSRTMRDMNRLVAFEKALNTWAKWVDANIDPTKTKVFYQGVSPDHTNATS 253
+K+EWD E G ++D + V AL T +K + + + FYQ ++ DH + +
Sbjct: 210 QKEEWDQ-EKGEMVLKDEDETVNQASALWTRSK---SEVSDEQYTQFYQHIAHDHQDPLT 265
Query: 254 WGHS 257
W H+
Sbjct: 266 WTHN 269
>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
Length = 781
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 72 WQPTGCNLPRFNGRD--FLLRHQGKSILFVGDSLSLNQWQSLTCMLHKAVPE 121
WQP GC L ++ + F LR K I FVGDS + S M++ V E
Sbjct: 64 WQPYGCMLHKYKSTEAKFCLRE--KRIAFVGDSRIRQLFYSFIKMMNPEVKE 113
>sp|P43899|Y463_HAEIN Oxygen-independent coproporphyrinogen-III oxidase-like protein
HI_0463 OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=HI_0463 PE=3 SV=1
Length = 383
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 48 CPFIEKQFDCQKNGRPDKDYLKYRWQPTGCNLPRFNGRDFLLRHQGKSILFVGDSLSLNQ 107
CP+ + QK+ P++DY+ + Q +L RF +D + + + SI G + SL
Sbjct: 20 CPYCDFNSHAQKSDIPEQDYIYHLLQDLQADLQRF--KDSIQQRKLHSIFIGGGTPSLFS 77
Query: 108 WQSLTCML 115
+S+ +L
Sbjct: 78 AESIAYLL 85
>sp|Q4FMN5|SYY_PELUB Tyrosine--tRNA ligase OS=Pelagibacter ubique (strain HTCC1062)
GN=tyrS PE=3 SV=1
Length = 409
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 43/156 (27%)
Query: 165 KLGSTESGALWKDKDVLIFNTWHWWLHSGRKQEWDYIEDGSRTMRDMNRLVAFEKALNTW 224
K+G TESGA+W DK L +++ +W Q W I+D RD+ + +
Sbjct: 232 KMGKTESGAVWLDKKFL--SSYDYW------QFWRNIDD-----RDVLKFLKI------- 271
Query: 225 AKWVDANIDPTKTKVFYQGVSPDHTN---------ATSWGH-SNATKDCREET-QPFIGH 273
+ D N+D + + D+ N ATS H + + C+E Q F +
Sbjct: 272 --FTDINVDEI------ENIKDDNINELKILLANKATSMLHGEDEARKCQETAKQTFSEN 323
Query: 274 KYRRGSPAAELVVEKVISNMSKPVHLLGVTMLSQLR 309
P ++ + + N+S +L + +LS+L
Sbjct: 324 SLGDNLPTTQINKKMLDDNIS----ILDLVILSKLE 355
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,889,208
Number of Sequences: 539616
Number of extensions: 5908472
Number of successful extensions: 11581
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 11578
Number of HSP's gapped (non-prelim): 26
length of query: 351
length of database: 191,569,459
effective HSP length: 118
effective length of query: 233
effective length of database: 127,894,771
effective search space: 29799481643
effective search space used: 29799481643
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)