BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018726
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Query: 148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
VL I + LAGKT+ YF A WCPPCR+FT QLI+ Y + N FEV+L+S
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAESKN--FEVMLISW 73
Query: 208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 265
D ++F ++ MPWLA+P+EDR + L F++K IP LV + D G I+T + M
Sbjct: 74 DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 133
Query: 266 I 266
+
Sbjct: 134 V 134
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 28 LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87
L + L S GKT+ +FSA+WC PC+ FTPQL+ Y EV+ IS+D
Sbjct: 17 LKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKA-HAESKNFEVMLISWDE 75
Query: 88 DENGFEEHFKCMPWLAVPFDE 108
F++++ MPWLA+PF++
Sbjct: 76 SAEDFKDYYAKMPWLALPFED 96
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
VL I + LAGKT+ YF A WCPPCR+FT QLI+ Y N FEV+L+S
Sbjct: 14 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKN--FEVMLISW 71
Query: 208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 265
D ++F ++ MPWLA+P+EDR + L F++K IP LV + D G I+T + M
Sbjct: 72 DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 131
Query: 266 I 266
+
Sbjct: 132 V 132
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEE 94
+ L S GKT+ +FSA+WC PC+ FTPQL+ Y EV+ IS+D F++
Sbjct: 22 IALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKA-HAEKKNFEVMLISWDESAEDFKD 80
Query: 95 HFKCMPWLAVPFDE 108
++ MPWLA+PF++
Sbjct: 81 YYAKMPWLALPFED 94
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
VL I + LAGKT+ YF A WCPPCR+FT QLI+ Y N FEV+L+S
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKN--FEVMLISW 70
Query: 208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 265
D ++F ++ MPWLA+P+EDR + L F++K IP LV + D G I+T + M
Sbjct: 71 DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
Query: 266 I 266
+
Sbjct: 131 V 131
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEE 94
+ L S GKT+ +FSA+WC PC+ FTPQL+ Y EV+ IS+D F++
Sbjct: 21 IALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKA-HAEKKNFEVMLISWDESAEDFKD 79
Query: 95 HFKCMPWLAVPFDE 108
++ MPWLA+PF++
Sbjct: 80 YYAKMPWLALPFED 93
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
VL I + LAGKT+ YF A WCPPCR+FT QLI+ Y N FEV+L+S
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKN--FEVMLISW 73
Query: 208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 265
D ++F ++ MPWLA+P+EDR + L F++K IP LV + D G I+T + M
Sbjct: 74 DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 133
Query: 266 I 266
+
Sbjct: 134 V 134
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEE 94
+ L S GKT+ +FSA+WC PC+ FTPQL+ Y EV+ IS+D F++
Sbjct: 24 IALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKA-HAEKKNFEVMLISWDESAEDFKD 82
Query: 95 HFKCMPWLAVPFDE 108
++ MPWLA+PF++
Sbjct: 83 YYAKMPWLALPFED 96
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
VL I + LAGKT+ YF A WCPP R+FT QLI+ Y N FEV+L+S
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKN--FEVMLISW 70
Query: 208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 265
D ++F ++ MPWLA+P+EDR + L F++K IP LV + D G I+T + M
Sbjct: 71 DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
Query: 266 I 266
+
Sbjct: 131 V 131
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEE 94
+ L S GKT+ +FSA+WC P + FTPQL+ Y EV+ IS+D F++
Sbjct: 21 IALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKA-HAEKKNFEVMLISWDESAEDFKD 79
Query: 95 HFKCMPWLAVPFDE 108
++ MPWLA+PF++
Sbjct: 80 YYAKMPWLALPFED 93
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin
Related Protein 16 And Its Role In Regulating
Transcription Factor Nf-Kb Activity
Length = 143
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Query: 166 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP--- 222
IG YF AHWCPPCR FT L ++Y+EL + FE++ VS+DR E D+ +M
Sbjct: 29 IGFYFSAHWCPPCRGFTPILADMYSEL-VDDSAPFEIIFVSSDR--SEDDMFQYMMESHG 85
Query: 223 -WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAF 274
WLAIPY ++ + I GIPALV++ DG IS NG+ + G +AF
Sbjct: 86 DWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQSLGPRAF 138
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM----- 99
I +FSA+WC PC+ FTP L +Y L E+IF+S D E ++ F+ M
Sbjct: 29 IGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSE---DDMFQYMMESHG 85
Query: 100 PWLAVPFDETLHXXXXXXXXXXXXXAIDDSKRQGGKLEQLLAIEGRDYVLSRDHR 154
WLA+P+ A+ K+ G L+++ GR V S R
Sbjct: 86 DWLAIPYRSGPASNVTAKYGITGIPALVIVKKDG----TLISMNGRGEVQSLGPR 136
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
L R ++ V LAGK + YF A WCPPCR FT QLIE Y++ + N FEVV + D
Sbjct: 13 LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKN--FEVVFCTWD 70
Query: 209 RDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI 266
+ F + MPWLA+P+ + A Q L + FN++ IP L+ + D G ++T + +
Sbjct: 71 EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 130
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 24 GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
G+E L G+V + S GK + +FSA+WC PC+ FTPQL++ YD EV+F
Sbjct: 9 GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFC 67
Query: 84 SFDHDENGFEEHFKCMPWLAVPFDET 109
++D +E+GF +F MPWLAVPF ++
Sbjct: 68 TWDEEEDGFAGYFAKMPWLAVPFAQS 93
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
L R ++ V LAGK + YF A WCPPCR FT QLIE Y++ + N FEVV + D
Sbjct: 14 LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKN--FEVVFCTWD 71
Query: 209 RDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI 266
+ F + MPWLA+P+ + A Q L + FN++ IP L+ + D G ++T + +
Sbjct: 72 EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 24 GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
G+E L G+V + S GK + +FSA+WC PC+ FTPQL++ YD EV+F
Sbjct: 10 GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFC 68
Query: 84 SFDHDENGFEEHFKCMPWLAVPFDET 109
++D +E+GF +F MPWLAVPF ++
Sbjct: 69 TWDEEEDGFAGYFAKMPWLAVPFAQS 94
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia
Fasciculata
Length = 146
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
L R ++ V LAGK + YF A WCPPCR FT QLIE Y++ + N FEVV + D
Sbjct: 14 LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKN--FEVVFCTWD 71
Query: 209 RDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI 266
+ F + MPWLA+P+ + A Q L + FN++ IP L+ + D G ++T + +
Sbjct: 72 EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 24 GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
G+E L G+V + S GK + +FSA+WC PC+ FTPQL++ YD EV+F
Sbjct: 10 GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFC 68
Query: 84 SFDHDENGFEEHFKCMPWLAVPFDET 109
++D +E+GF +F MPWLAVPF ++
Sbjct: 69 TWDEEEDGFAGYFAKMPWLAVPFAQS 94
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
L R ++ V LAGK + YF A WCPPCR FT QLIE Y++ + N FEVV + D
Sbjct: 14 LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKN--FEVVFCTWD 71
Query: 209 RDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI 266
+ F + MPWLA+P+ + A Q L + FN++ IP L+ + D G ++T + +
Sbjct: 72 EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 24 GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
G+E L G+V + S GK + +FSA+WC PC+ FTPQL++ YD EV+F
Sbjct: 10 GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFC 68
Query: 84 SFDHDENGFEEHFKCMPWLAVPFDET 109
++D +E+GF +F MPWLAVPF ++
Sbjct: 69 TWDEEEDGFAGYFAKMPWLAVPFAQS 94
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 142 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 201
+ G +LS+ ++++ L GKT+ LYF A WCPPCR FT L E Y + N FE
Sbjct: 8 LPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN--FE 64
Query: 202 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR-QDLCRIFNIKGIPALVLIGPD-GKTIS 259
VVL+S D + +F + MPWLA+P++ R+ +L + F ++ IP L+ I D G I
Sbjct: 65 VVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIG 124
Query: 260 TNGKEMI 266
T + +
Sbjct: 125 TQARTRV 131
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 24 GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
G LLS+ G+V L S GKT+ L+FSA+WC PC+ FTP L + Y+ EV+ I
Sbjct: 10 GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHV-AKNFEVVLI 68
Query: 84 SFDHDENGFEEHFKCMPWLAVPFDE 108
S+D +E+ F +++ MPWLA+PFD+
Sbjct: 69 SWDENESDFHDYYGKMPWLALPFDQ 93
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 158 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 217
+ L+GKT+ YF A WCPPCR FT QL+E Y + + N FE++L S D + +F+
Sbjct: 43 MDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKN--FEIILASWDEEEDDFNAY 100
Query: 218 HSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMIS 267
++ MPWL+IP+ +R + L + ++++ IP L+ + D G T++T + ++
Sbjct: 101 YAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALT 152
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF 96
+ S GKT+ +FSA+WC PC+ FTPQLV+ Y+ E+I S+D +E+ F ++
Sbjct: 43 MDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEK-HHDSKNFEIILASWDEEEDDFNAYY 101
Query: 97 KCMPWLAVPF 106
MPWL++PF
Sbjct: 102 AKMPWLSIPF 111
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
L R ++ V LAGK + YF A WCPP R FT QLIE Y++ + N FEVV + D
Sbjct: 14 LRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKN--FEVVFCTWD 71
Query: 209 RDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI 266
+ F + MPWLA+P+ + A Q L + FN++ IP L+ + D G ++T + +
Sbjct: 72 EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 24 GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
G+E L G+V + S GK + +FSA+WC P + FTPQL++ YD EV+F
Sbjct: 10 GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFH-ESKNFEVVFC 68
Query: 84 SFDHDENGFEEHFKCMPWLAVPFDET 109
++D +E+GF +F MPWLAVPF ++
Sbjct: 69 TWDEEEDGFAGYFAKMPWLAVPFAQS 94
>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical
Protein From Arabidopsis Thaliana
Length = 89
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 270 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKHE-HELKLDMAKAYVCDCCKMRGRFW 328
G+ TE R+ EIE + P++VK V HE HEL+L + Y CD C+ G W
Sbjct: 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60
Query: 329 AFSCDVCNYDLHPKCV 344
++ CD C++DLH KC
Sbjct: 61 SYHCDECDFDLHAKCA 76
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-RD 210
D + +S+ GKT+ + A WC PCR L E+ +L + FEVV ++ D RD
Sbjct: 49 DGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKL---SGPNFEVVAINIDTRD 105
Query: 211 HKEFD--LNHSIMPWLAIPYEDRAR--QDLCRIFNIKGIPALVLIGPDGKTIST 260
++ L + + L + +A+ QDL I G+P VL+ P G I+T
Sbjct: 106 PEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 159
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
LS GKT+ + A WC PC+ P L +L L G EV+ I+ D
Sbjct: 55 LSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKL--SGPNFEVVAINID 102
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 156 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 215
+++++ GK + + F C CR T L++ YN K + F + VSTDR +++
Sbjct: 22 VSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFK---DKGFTIYGVSTDRREEDWK 78
Query: 216 --LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS 259
+ W + + +D+ + I G P ++L+ P+GK ++
Sbjct: 79 KAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVA 124
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 143 EGRD---YVLS-RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANH 198
EG D +VL + ++I +S+L GK + L F WC PC+ Q + N+ K +
Sbjct: 2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCK---KQFPYMANQYKHFKSQ 58
Query: 199 CFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE---DRARQDLCRIFNIKGIPALVLIGPDG 255
E+V V+ H+ M + + D RQ L +++ +P LI P+G
Sbjct: 59 GVEIVAVNVGESKIAV---HNFMKSYGVNFPVVLDTDRQVL-DAYDVSPLPTTFLINPEG 114
Query: 256 KTI 258
K +
Sbjct: 115 KVV 117
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 21 ASEGVEFLL--SRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTEL 78
S+ F+L + ++ LS GK + L F WC PCK P + Y +++G E+
Sbjct: 3 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEI 62
Query: 79 EVIFIS 84
+ +
Sbjct: 63 VAVNVG 68
>pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From Xylella
Fastidiosa Temecula1
Length = 133
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 168 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 227
L FGA+WC CR+ L N A H FEVV + D FD N + P
Sbjct: 34 LVFGANWCTDCRALDKSLRNQKN-TALIAKH-FEVVKI----DVGNFDRNLELSQAYGDP 87
Query: 228 YEDRARQDLCRIFNIKGIPALVLIGPDGKT-ISTNGKEMIS 267
+D GIPA+V++ DGK +T G E+ +
Sbjct: 88 IQD-------------GIPAVVVVNSDGKVRYTTKGGELAN 115
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
+ + +++++L GK I + A WC PCR L E+ + A V +S D++
Sbjct: 19 NGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKY---AGKDIHFVSLSCDKNK 75
Query: 212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 261
K ++ + I + + I GIP +L+ DGK IS N
Sbjct: 76 KAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISAN 125
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEE 94
V L+ GK I + A WC PC+ P L +L + + G ++ + +S D ++ +E
Sbjct: 23 VSLADLKGKYIYIDVWATWCGPCRGELPALKELEE--KYAGKDIHFVSLSCDKNKKAWEN 80
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 143 EGRD---YVLS-RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANH 198
EG D +VL + ++I +S+L GK + L F WC PC+ + Y K+
Sbjct: 2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG-- 59
Query: 199 CFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE---DRARQDLCRIFNIKGIPALVLIGPDG 255
E+V V+ H+ M + + D RQ L +++ +P LI P+G
Sbjct: 60 -VEIVAVNVGESKIAV---HNFMKSYGVNFPVVLDTDRQVL-DAYDVSPLPTTFLINPEG 114
Query: 256 KTI 258
K +
Sbjct: 115 KVV 117
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 21 ASEGVEFLL--SRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTEL 78
S+ F+L + ++ LS GK + L F WC PCK P + Y +++G E+
Sbjct: 3 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEI 62
Query: 79 EVIFIS 84
+ +
Sbjct: 63 VAVNVG 68
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFE 93
L+ G K + + F A WC PCK P+L +L ++ +V+F+ D DE +
Sbjct: 15 LNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS------DVVFLKVDVDECEDIAQD 68
Query: 94 EHFKCMP 100
CMP
Sbjct: 69 NQIACMP 75
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 143 EGRD---YVLS-RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANH 198
EG D +VL + ++I +S+L GK + L F WCP C+ + Y K+
Sbjct: 2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQG-- 59
Query: 199 CFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE---DRARQDLCRIFNIKGIPALVLIGPDG 255
E+V V+ H+ M + + D RQ L +++ +P LI P+G
Sbjct: 60 -VEIVAVNVGESKIAV---HNFMKSYGVNFPVVLDTDRQVL-DAYDVSPLPTTFLINPEG 114
Query: 256 KTI 258
K +
Sbjct: 115 KVV 117
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 21 ASEGVEFLL--SRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTEL 78
S+ F+L + ++ LS GK + L F WC CK P + Y +++G E+
Sbjct: 3 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEI 62
Query: 79 EVIFIS 84
+ +
Sbjct: 63 VAVNVG 68
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG-FEEHF 96
++ G K I L+F +W PCK L Q+++ + + V F+S D DEN E F
Sbjct: 17 TAAGDKLIVLYFHTSWAEPCKA----LKQVFEAISNEPSNSNVSFLSIDADENSEISELF 72
Query: 97 KCMPWLAVPFDETLH 111
+ AVP+ +H
Sbjct: 73 EIS---AVPYFIIIH 84
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 29/116 (25%)
Query: 156 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 215
+T + K I LYF W PC++ Q+ E + + +N V +S D D
Sbjct: 14 LTTTAAGDKLIVLYFHTSWAEPCKAL-KQVFEAISNEPSNSN----VSFLSIDADEN--- 65
Query: 216 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLI--GPDGKTIS-TNGKEMISL 268
++ +F I +P ++I G K +S + KE +SL
Sbjct: 66 ------------------SEISELFEISAVPYFIIIHKGTILKELSGADPKEYVSL 103
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange Protein,
Thioredoxin Family Protein From Chlorobium Tepidum Tls
Length = 165
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
++ D + + + L GK + F A WCPPCRS ++V KT A+ F V ++ +
Sbjct: 20 VTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDXVQVQ---KTWASRGFTFVGIAVN 76
Query: 209 RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN------IKGIPALVLIGPDG 255
N+ + P A +L R FN I GIP +I G
Sbjct: 77 EQLPNVK-NYXKTQGIIYPVX-XATPELIRAFNGYIDGGITGIPTSFVIDASG 127
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 36 PLSSCG--GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRG 75
P SS GK + F A WC PC++ P VQ+ T +RG
Sbjct: 26 PFSSASLKGKAYIVNFFATWCPPCRSEIPDXVQVQKTWASRG 67
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQL 67
L+ GK + L F A WC PCK +P+LV+L
Sbjct: 20 LTKASGKLVVLDFFATWCGPCKMISPKLVEL 50
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 158 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE---F 214
+++ +GK + L F A WC PC+ + +L+E+ + VV++ D D E
Sbjct: 20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN------VVVLKVDVDECEDIAM 73
Query: 215 DLNHSIMP 222
+ N S MP
Sbjct: 74 EYNISSMP 81
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQL 67
L+ GK + L F A WC PCK +P+LV+L
Sbjct: 15 LTKASGKLVVLDFFATWCGPCKMISPKLVEL 45
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 158 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE---F 214
+++ +GK + L F A WC PC+ + +L+E+ + VV++ D D E
Sbjct: 15 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN------VVVLKVDVDECEDIAM 68
Query: 215 DLNHSIMP 222
+ N S MP
Sbjct: 69 EYNISSMP 76
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFE 93
L + G K + + FSA WC PCK P + +L + + VIF+ D D+ E
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYS--NVIFLEVDVDDCQDVASE 68
Query: 94 EHFKCMP 100
KCMP
Sbjct: 69 XEVKCMP 75
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 21 ASEGVEFLL--SRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTEL 78
S+ F+L + ++ LS GK + L F WC PCK P Y +++G E+
Sbjct: 3 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQGVEI 62
Query: 79 EVIFIS 84
+ +
Sbjct: 63 VAVNVG 68
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 143 EGRD---YVLS-RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANH 198
EG D +VL + ++I +S+L GK + L F WC PC+ + N+ K +
Sbjct: 2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCK---KEFPYXANQYKHFKSQ 58
Query: 199 CFEVVLVSTDRDH-------KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLI 251
E+V V+ K + +N ++ D RQ + +++ +P LI
Sbjct: 59 GVEIVAVNVGESKIAVHNFXKSYGVNFPVV-------LDTDRQ-VLDAYDVSPLPTTFLI 110
Query: 252 GPD 254
P+
Sbjct: 111 NPE 113
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 128 DSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPC---RSFTSQ 184
++ R G E++L E + + D I+++ + G + L+F A WCP C +
Sbjct: 2 NAPRAAGHSEEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDR 61
Query: 185 LIEVYNELKTTA 196
L E Y E+ A
Sbjct: 62 LTEKYREISVIA 73
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 19 VLASEGVEFLLSRQGKV-PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTE 77
VL E L + G+V L++ GG + L+F A WC C + L D L + E
Sbjct: 13 VLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCV----YMADLLDRLTEKYRE 68
Query: 78 LEVIFISF 85
+ VI I F
Sbjct: 69 ISVIAIDF 76
>pdb|2JU5|A Chain A, Dsbh Oxidoreductase
Length = 154
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 164 KTIGLYF-GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 222
K IGL+F G+ WC C Q+++ +E K A + +V D K NH
Sbjct: 48 KPIGLFFTGSDWCMWCIKMQDQILQS-SEFKHFAG--VHLHMVEVDFPQK----NHQ--- 97
Query: 223 WLAIPYEDRAR-QDLCRIFNIKGIPALVLIGPDGKTISTNGKE 264
P E R + Q+L + + G P LV I +GK ++ G E
Sbjct: 98 ----PEEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARMGFE 136
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 143 EGRD---YVLS-RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANH 198
EG D +VL + ++I +S+L GK + L F WC P + + + N+ K +
Sbjct: 2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKK---EFPYMANQYKHFKSQ 58
Query: 199 CFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE---DRARQDLCRIFNIKGIPALVLIGPDG 255
E+V V+ H+ M + + D RQ + +++ +P LI P+G
Sbjct: 59 GVEIVAVNVGESKIAV---HNFMKSYGVNFPVVLDTDRQ-VLDAYDVSPLPTTFLINPEG 114
Query: 256 KTI 258
K +
Sbjct: 115 KVV 117
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 21 ASEGVEFLL--SRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTEL 78
S+ F+L + ++ LS GK + L F WC P K P + Y +++G E+
Sbjct: 3 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVEI 62
Query: 79 EVIFIS 84
+ +
Sbjct: 63 VAVNVG 68
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 143 EGRD---YVLS-RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANH 198
EG D +VL + ++I +S+L GK + L F W PC+ + + N+ K +
Sbjct: 2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPCKK---EFPYMANQYKHFKSQ 58
Query: 199 CFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE---DRARQDLCRIFNIKGIPALVLIGPDG 255
E+V V+ H+ M + + D RQ + +++ +P LI P+G
Sbjct: 59 GVEIVAVNVGESKIAV---HNFMKSYGVNFPVVLDTDRQ-VLDAYDVSPLPTTFLINPEG 114
Query: 256 KTI 258
K +
Sbjct: 115 KVV 117
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 21 ASEGVEFLL--SRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTEL 78
S+ F+L + ++ LS GK + L F W PCK P + Y +++G E+
Sbjct: 3 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQGVEI 62
Query: 79 EVIFIS 84
+ +
Sbjct: 63 VAVNVG 68
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 216
++++L GK + + F + + L E+YN+ A+ FE+ +S D D +
Sbjct: 29 SLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKY---ASQGFEIYQISLDGDEHFWKT 85
Query: 217 NHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL 268
+ +PW+ + + A ++N+ +P++ L+ + + +S G+ + L
Sbjct: 86 SADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNE-LSARGENIKDL 136
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 146 DYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV 205
D+ L + +S+ G + L F A WC PCR + + K F+VV V
Sbjct: 11 DFALPGKTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKG---FQVVAV 67
Query: 206 STDRDHKEFDLNHSIMPW-LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 258
+ D + + +P + ++ + + R++ +KG P LI +GK +
Sbjct: 68 NLDAKTGDAXKFLAQVPAEFTVAFDPKGQ--TPRLYGVKGXPTSFLIDRNGKVL 119
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 28 LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
L + G V LS G + L F A+WC PC+ P Q + +G +V+ ++ D
Sbjct: 14 LPGKTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKG--FQVVAVNLD 70
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFE 93
L + G K + + FSA WC PCK P + +L + + VIF+ D D+ E
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYS--NVIFLEVDVDDCQDVASE 68
Query: 94 EHFKCMP 100
KCMP
Sbjct: 69 CEVKCMP 75
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 213
++I +S+L GK + L F WC C+ + Y K+ E+V V+
Sbjct: 14 KRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQG---VEIVAVNVGESKIA 70
Query: 214 FDLNHSIMPWLAIPYE---DRARQDLCRIFNIKGIPALVLIGPDGKTI 258
H+ M + + D RQ L +++ +P LI P+GK +
Sbjct: 71 V---HNFMKSYGVNFPVVLDTDRQVL-DAYDVSPLPTTFLINPEGKVV 114
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 22 SEGVEFLL--SRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELE 79
S+ F+L + ++ LS GK + L F WC CK P + Y +++G E+
Sbjct: 1 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIV 60
Query: 80 VIFIS 84
+ +
Sbjct: 61 AVNVG 65
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 11/136 (8%)
Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
D +++T+S L GK + L F A WC CR IE LK N F L+ DRD
Sbjct: 22 DGKQVTLSSLRGKVVMLQFTASWCGVCRK-EMPFIEKDIWLKHKDNADF--ALIGIDRDE 78
Query: 212 K-EFDLNHSIMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGKTISTNGKEMISL 268
E L + + P D+ + ++ GI VLI +GK + ++ L
Sbjct: 79 PLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIV-----KLTRL 133
Query: 269 YGAKAFPFTESRIAEI 284
Y + F +I E+
Sbjct: 134 YNEEEFASLVQQINEM 149
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 29 LSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTP 62
L+ +V LSS GK + L F+A+WC C+ P
Sbjct: 20 LTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMP 53
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 20 LASEGVEFLLSRQ---GKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT 76
LA V + +++ K+ +S GK + FSA WC PCK P ++L + +
Sbjct: 21 LAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPS--- 77
Query: 77 ELEVIFISFDHDE 89
++F+ D DE
Sbjct: 78 ---LMFLVIDVDE 87
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 151 RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEV 188
R +K++ + GK + F A WC PC+ IE+
Sbjct: 34 RWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIEL 71
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 11/116 (9%)
Query: 141 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 200
IEG D I++ KTI L+F WCPPC+ Q Y+ + +
Sbjct: 22 TIEGED---------ISIPNKGQKTI-LHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLV 71
Query: 201 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 256
V LV+++++ + + + L P ++ +L + ++I IP L+ G+
Sbjct: 72 TVNLVNSEQNQQVVE-DFIKANKLTFPIVLDSKGELXKEYHIITIPTSFLLNEKGE 126
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVI-FISFDHDENGFE 93
+ + + G KTI F+++ WC PCK PQ YD + +L + ++ + ++ E
Sbjct: 28 ISIPNKGQKTILHFWTS-WCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVE 86
Query: 94 EHFKC 98
+ K
Sbjct: 87 DFIKA 91
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 35.0 bits (79), Expect = 0.066, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFE 93
L + G K + + FSA WC PCK P + +L + + VIF+ D ++ E
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYS--NVIFLEVDVNDCQDVASE 68
Query: 94 EHFKCMP 100
KCMP
Sbjct: 69 CEVKCMP 75
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
L + G K + + FSA WC PCK P + +L + + VIF+ D D+
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYS--NVIFLEVDVDD 61
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 34.7 bits (78), Expect = 0.075, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFE 93
L + G K + + FSA WC PCK P + +L + + VIF+ D D+ E
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYS--NVIFLEVDVDDCQDVASE 68
Query: 94 EHFKCMP 100
K MP
Sbjct: 69 SEVKSMP 75
>pdb|3FKF|A Chain A, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|B Chain B, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|C Chain C, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|D Chain D, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
Length = 148
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 37/92 (40%)
Query: 168 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 227
L F A WC P ++L + E K N + + DR+ E + + W +
Sbjct: 38 LNFWASWCDPQPEANAELKRLNKEYKKNKNFAXLGISLDIDREAWETAIKKDTLSWDQVC 97
Query: 228 YEDRARQDLCRIFNIKGIPALVLIGPDGKTIS 259
+ + + I +P +L+ P GK ++
Sbjct: 98 DFTGLSSETAKQYAILTLPTNILLSPTGKILA 129
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Query: 143 EGRD---YVLS-RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANH 198
EG D +VL + ++I +S+L GK + L F W P + + Y K+
Sbjct: 2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFKS---Q 58
Query: 199 CFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE---DRARQDLCRIFNIKGIPALVLIGPDG 255
E+V V+ H+ M + + D RQ + +++ +P LI P+G
Sbjct: 59 GVEIVAVNVGESKIAV---HNFMKSYGVNFPVVLDTDRQ-VLDAYDVSPLPTTFLINPEG 114
Query: 256 KTI 258
K +
Sbjct: 115 KVV 117
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 21 ASEGVEFLL--SRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTEL 78
S+ F+L + ++ LS GK + L F W P K P + Y +++G E+
Sbjct: 3 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFKSQGVEI 62
Query: 79 EVIFIS 84
+ +
Sbjct: 63 VAVNVG 68
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
Length = 105
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
L + G K + + FSA WC PCK P + +L + + VIF+ D D+
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYS--NVIFLEVDVDD 61
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFE 93
L + G K + + FSA WC PCK P + +L + + VIF+ D D+ E
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYS--NVIFLEVDVDDCQDVASE 68
Query: 94 EHFKCMP 100
KC P
Sbjct: 69 CEVKCTP 75
>pdb|3LWA|A Chain A, The Crystal Structure Of A Secreted Thiol-Disulfide
Isomerase From Corynebacterium Glutamicum To 1.75a
Length = 183
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 127 DDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLI 186
D++ RQ QL I G L + +I +S+ + + L WC PCRS + L
Sbjct: 30 DEADRQ-----QLPDIGGDS--LXEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQ 82
Query: 187 EVYNELKTTAN 197
++ EL+ N
Sbjct: 83 IIHEELQAAGN 93
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
L + G K + + FSA WC PCK P + +L + + VIF+ D D+
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYS--NVIFLEVDVDD 61
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
pdb|3PDK|B Chain B, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
Length = 469
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 247 ALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPR 297
A V+I + NG I +G+ F T+ + AEIE L KE D LPR
Sbjct: 114 AGVMISASHNPVQDNG---IKFFGSDGFKLTDEQEAEIEALLDKEVDELPR 161
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 156 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 215
+ +S+L G+ + + F A WCPPCR + A F + VS D K
Sbjct: 21 VKLSDLKGQVVIVNFWATWCPPCREEIPSXXRLN---AAXAGKPFRXLCVSIDEGGKVAV 77
Query: 216 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLI 251
+P A + + +++ G+P +I
Sbjct: 78 EEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVI 113
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQL 67
V LS G+ + + F A WC PC+ P +L
Sbjct: 21 VKLSDLKGQVVIVNFWATWCPPCREEIPSXXRL 53
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 211
+ ++ ++L GK + F CP C S ++I+ N+ K N F+V+ V+ D
Sbjct: 19 KTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYK---NKNFQVLAVAQPIDPIE 75
Query: 212 ------KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260
K++ L ++M Y+ A + + + F + P VLIG G+ + T
Sbjct: 76 SVRQYVKDYGLPFTVM------YD--ADKAVGQAFGTQVYPTSVLIGKKGEILKT 122
>pdb|2K6V|A Chain A, Solution Structures Of Apo Sco1 Protein From Thermus
Thermophilus
Length = 172
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 138 QLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTA 196
+LL + D+ L + +S+ K + L+FG CP C + L Y +L A
Sbjct: 10 RLLNPKPVDFALEGPQGPVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKA 69
Query: 197 NHCFEVVLVSTD--RDHKE 213
+V+ VS D RD E
Sbjct: 70 QERVQVIFVSVDPERDPPE 88
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 33.1 bits (74), Expect = 0.23, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS---FDHDENGFE 93
L + G K + + FSA WC PCK P + +L + + VIF+ D + E
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYS--NVIFLEVDVDDXQDVASE 68
Query: 94 EHFKCMP 100
KCMP
Sbjct: 69 XEVKCMP 75
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV-- 205
+ R +K+ V + + ++ G HWC F + I Y+ + N ++L
Sbjct: 102 AVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYL 161
Query: 206 ---STDRDHKEFDLN 217
S D+ KEFD N
Sbjct: 162 KQESIDKKRKEFDTN 176
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV--- 205
+ R +K+ V + + ++ G HWC F + I Y+ + N ++L
Sbjct: 95 VKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLK 154
Query: 206 --STDRDHKEFDLN 217
S D+ KEFD N
Sbjct: 155 QESIDKKRKEFDTN 168
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV--- 205
+ R +K+ V + + ++ G HWC F + I Y+ + N ++L
Sbjct: 70 VKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLK 129
Query: 206 --STDRDHKEFDLN 217
S D+ KEFD N
Sbjct: 130 QESIDKKRKEFDTN 143
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV--- 205
+ R +K+ V + + ++ G HWC F + I Y+ + N ++L
Sbjct: 91 VKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLK 150
Query: 206 --STDRDHKEFDLN 217
S D+ KEFD N
Sbjct: 151 QESIDKKRKEFDTN 164
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV--- 205
+ R +K+ V + + ++ G HWC F + I Y+ + N ++L
Sbjct: 91 VKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLK 150
Query: 206 --STDRDHKEFDLN 217
S D+ KEFD N
Sbjct: 151 QESIDKKRKEFDTN 164
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 32.7 bits (73), Expect = 0.29, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFE 93
L + G K + + FSA WC P K P + +L + + VIF+ D D++ E
Sbjct: 15 LDAAGDKLVVVDFSATWCGPSKMIKP----FFHSLSEKYS--NVIFLEVDVDDSQDVASE 68
Query: 94 EHFKCMP 100
K MP
Sbjct: 69 SEVKSMP 75
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV--- 205
+ R +K+ V + + ++ G HWC F + I Y+ + N ++L
Sbjct: 91 VKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLK 150
Query: 206 --STDRDHKEFDLN 217
S D+ KEFD N
Sbjct: 151 QESIDKKRKEFDTN 164
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 19 VLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTEL 78
V+ SE +E + L K + + F A WC PCKT P +L + +
Sbjct: 10 VIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE-------KY 62
Query: 79 EVIFISFDHD---ENGFEEHFKCMP 100
+ IF+ D D E + + MP
Sbjct: 63 DAIFVKVDVDKLEETARKYNISAMP 87
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
K + + + A WC CK P +L DT + +V+ DH EN
Sbjct: 377 KDVLVLYYAPWCGHCKRLAPTYQELADTYANATS--DVLIAKLDHTEN 422
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 20 LASEGVEFLLSRQ---GKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT 76
LA V + +++ K+ +S GK + FSA WC P + P ++L + +
Sbjct: 21 LAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPS--- 77
Query: 77 ELEVIFISFDHDE 89
++F+ D DE
Sbjct: 78 ---LMFLVIDVDE 87
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-HDEN 90
+ + G K + L WC PCK P+ +L + L+VIF+ D + EN
Sbjct: 32 VKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY------LDVIFLKLDCNQEN 80
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 31.6 bits (70), Expect = 0.60, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
K + + F A WC PCKT P +L + + + IF+ D D+
Sbjct: 25 KLVVVDFFATWCGPCKTIAPLFKELSE-------KYDAIFVKVDVDK 64
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 31.6 bits (70), Expect = 0.66, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
+ + G K + L WC PCK P+ +L + L+VIF+ D ++
Sbjct: 20 VKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY------LDVIFLKLDCNQ 66
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 20 LASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDT 70
L G ++S + + G K + + F A WC PCK P ++ DT
Sbjct: 11 LVPRGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT 61
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 31.2 bits (69), Expect = 0.82, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
G+ I + F A WC PC+ P++ L + EV F D D+N
Sbjct: 19 GRLIVVDFFAQWCGPCRNIAPKVEALAKEIP------EVEFAKVDVDQN 61
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 158 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 213
++E G+ I + F A WC PCR+ ++ + E+ EV D D E
Sbjct: 14 INENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-------EVEFAKVDVDQNE 62
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
T+ L F A WC CK F P+ ++ TL+ + V I
Sbjct: 36 TVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKI 75
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
GK + + F+A+WC PC+ P + IF+ D DE
Sbjct: 28 GKLVIIDFTASWCGPCRVIAPVFAEYAKKFPG------AIFLKVDVDE 69
>pdb|2JZR|A Chain A, Solution Structure Of The Oxidized Form (Cys67-Cys70) Of
The N-Terminal Domain Of Pilb From N. Meningitidis.
pdb|2JZS|A Chain A, Solution Structure Of The Reduced Form Of The N-Terminal
Domain Of Pilb From N. Meningitidis.
pdb|2K9F|A Chain A, Structural Features Of The Complex Between The Dsbd N-
Terminal And The Pilb N-Terminal Domains From Neisseria
Meningitidis
Length = 144
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Query: 150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR 209
+ D+R +V K + F A WCP C S Q + + K ++ + V
Sbjct: 11 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH 70
Query: 210 DHKEFDLN--HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDG 255
+ K+ D ++ + + +P + + NI P+ LIG DG
Sbjct: 71 EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDG 118
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 31.2 bits (69), Expect = 0.89, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
K I + F+A+WC PCK P +L V F+ D DE
Sbjct: 27 KLIVVDFTASWCPPCKMIAPIFAELAKKFPN------VTFLKVDVDE 67
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 31.2 bits (69), Expect = 0.91, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 43 KTICLFFSANWCRPCKTFTPQLVQLYDTL 71
K I + F+A WC PCK P L++TL
Sbjct: 25 KPIVVAFTATWCGPCKMIAP----LFETL 49
>pdb|2FY6|A Chain A, Structure Of The N-Terminal Domain Of Neisseria
Meningitidis Pilb
Length = 143
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Query: 150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR 209
+ D+R +V K + F A WCP C S Q + + K ++ + V
Sbjct: 10 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH 69
Query: 210 DHKEFDLN--HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDG 255
+ K+ D ++ + + +P + + NI P+ LIG DG
Sbjct: 70 EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDG 117
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
T+ L F A WC CK F P+ ++ + L+ + + V I
Sbjct: 34 TVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKI 73
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 28 LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
L+ R+ + K + + F A WC CK P+ + L+ G+E+ + +
Sbjct: 10 LVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV 65
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Mutant Human Thioredoxin
And A 13 Residue Peptide Comprising Its Target Site In
Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (c35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (Residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues
59-71 Of The P50 Subunit Of Nfkb), Nmr, Minimized
Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues
59-71 Of The P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
L + G K + + FSA WC P K P + +L + + VIF+ D D+
Sbjct: 15 LDAAGDKLVVVDFSATWCGPAKMIKP----FFHSLSEKYS--NVIFLEVDVDD 61
>pdb|3V4P|A Chain A, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4P|C Chain C, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4V|A Chain A, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
pdb|3V4V|C Chain C, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
Length = 597
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 144 GRDYVLSRDHRKITV-SELAGKTIGLYFGAHWC 175
G+ Y+ S D +++ + E+ GK +G YFGA C
Sbjct: 246 GKAYIFSIDEKELNILHEMKGKKLGSYFGASVC 278
>pdb|3IHV|A Chain A, Crystal Structure Of Susd Homolog (Np_813570.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
pdb|3IHV|B Chain B, Crystal Structure Of Susd Homolog (Np_813570.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
Length = 535
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 248 LVLIGPDGKTISTNGKEMISLYGAKAFPFTESRI----AEIETALKKEGDALPREVKDVK 303
L +G D + +G E + +FP T+S + A + T + + D L R +
Sbjct: 44 LFNLGTDISQVEGSGNENFRIIPTNSFPTTQSEVQQTWAALYTGIYRANDFLERISNKIG 103
Query: 304 HEHELKLDMAKAYVCDCCKMRGRFW 328
+A Y+ + +RG F+
Sbjct: 104 SYTTTDKKLATLYIAEARALRGXFY 128
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 37/123 (30%)
Query: 170 FGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 229
F A WC PC+ L E+ E + ++V+ D +
Sbjct: 45 FYADWCGPCKMVAPILDELAKE------YDGQIVIYKVDTEK------------------ 80
Query: 230 DRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK 289
Q+L F I+ IP+++ I +GK G A P + A E LK
Sbjct: 81 ---EQELAGAFGIRSIPSILFIPMEGKPEMAQG----------AMPKASFKKAIDEFLLK 127
Query: 290 KEG 292
KEG
Sbjct: 128 KEG 130
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 41 GGKTICLFFSANWCRPCKTFTPQLVQL 67
G K + F A+WC PCK P L +L
Sbjct: 37 GDKPAIVDFYADWCGPCKMVAPILDEL 63
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 43 KTICLFFSANWCRPCKTFTPQLVQLYDTL 71
K I + F+A WC PCK P L++TL
Sbjct: 25 KPIVVDFTATWCGPCKMIAP----LFETL 49
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 49 FSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
F A WC PCK P L +L + G +L+++ I D ++
Sbjct: 24 FWAPWCGPCKMIAPVLEELDQEM---GDKLKIVKIDVDENQ 61
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza
Sativa
Length = 130
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
GK + + F+A+WC PC+ P + +F+ D DE
Sbjct: 35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPG------AVFLKVDVDE 77
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 155 KITVSELAGKTIGLYFGAHWCPPCR 179
++T ++ AGK + + F A WC PCR
Sbjct: 28 QMTKAKEAGKVVIIDFTASWCGPCR 52
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Query: 150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS--T 207
+ D+R +V K + F A WCP C S Q + + K ++ + V
Sbjct: 25 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLH 84
Query: 208 DRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDG 255
++ EF ++ + + +P + + NI P+ LIG DG
Sbjct: 85 EKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDG 132
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
L + G K + + FSA WC P K P + +L + + VIF+ D D+
Sbjct: 26 LDAAGDKLVVVDFSATWCGPSKMIKP----FFHSLSEKYS--NVIFLEVDVDD 72
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
The Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
The Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
++ K + + F+A+WC PC+ P L +F+ D DE
Sbjct: 30 ANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN------AVFLKVDVDE 75
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
L + G K + + FSA WC P K P + +L + + VIF+ D D+
Sbjct: 15 LDAAGDKLVVVDFSATWCGPSKMIKP----FFHSLSEKYS--NVIFLEVDVDD 61
>pdb|3A5C|G Chain G, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|O Chain O, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|G Chain G, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|O Chain O, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|G Chain G, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 223
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 245 IPALVLIGPDGKTISTNGKEMISLYGAKAFP-FTES--RIAEIETALKKEGDALPREVKD 301
+P L PDG +S G +L ++AF + E+ R+A ET LKK G+ + + +
Sbjct: 101 VPRLKATFPDGALLSPVGTPAYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTTRR 160
Query: 302 VKHEHELKLDMAKAYV 317
V ++ + +A +
Sbjct: 161 VNALEQVVIPGIRAQI 176
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 49 FSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
F A WC PCK P L +L +V F+ D DE+
Sbjct: 37 FYATWCGPCKMMQPHLTKLIQAYP------DVRFVKCDVDES 72
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88
K + + F A WC PCK P L ++ R T+L V + D +
Sbjct: 29 SNKPVLVDFWATWCGPCKMVAPVLEEIA---TERATDLTVAKLDVDTN 73
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 39 SCGGKTICLFFSANWCRPCKTFTPQL 64
+ G K + + F A WC PCK P +
Sbjct: 16 ASGDKLVVVDFFATWCGPCKMIAPMI 41
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFE 93
L + G K + + FSA W P K P + +L + + VIF+ D D+ E
Sbjct: 15 LDAAGDKLVVVDFSATWSGPSKMIKP----FFHSLSEKYS--NVIFLEVDVDDCQDVASE 68
Query: 94 EHFKCMP 100
KCMP
Sbjct: 69 CEVKCMP 75
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 39 SCGGKTICLFFSANWCRPCKTFTPQL 64
+ G K + + F A WC PCK P +
Sbjct: 23 ASGDKLVVVDFFATWCGPCKMIAPMI 48
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 49 FSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
F+A+WC PC+ P L L V+F+ D DE
Sbjct: 45 FTASWCGPCRFIAPFFADLAKKLPN------VLFLKVDTDE 79
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 41 GGKTICLFFSANWCRPCKTFTPQLVQL 67
G K + F A+WC PCK P L +L
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEEL 76
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 41 GGKTICLFFSANWCRPCKTFTPQLVQL 67
G K + F A+WC PCK P L +L
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEEL 76
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
Length = 116
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
K + + F A WC PCK P L ++ R T+L V + D
Sbjct: 26 KPVLVDFWATWCGPCKMVAPVLEEI---ATERATDLTVAKLDVD 66
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 45 ICLFFSANWCRPCKTFTPQLVQL 67
I + F+ +WC+PCK P ++
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEM 42
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH 95
+ ++F A+WC PC+ +P + +T R L+V+ + D + +++
Sbjct: 28 VLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNPTTVKKY 75
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
Length = 108
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT 76
I + F A WC PCK P L ++ D + + T
Sbjct: 23 ILVDFWAEWCGPCKMIAPILEEIADEYQGKLT 54
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 49 FSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
F A WC PCK P Y+ T++ +FI D DE
Sbjct: 33 FFAEWCGPCKRIAP----FYEECSKTYTKM--VFIKVDVDE 67
>pdb|3QWN|A Chain A, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|B Chain B, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|C Chain C, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|D Chain D, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|E Chain E, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|F Chain F, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|G Chain G, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|H Chain H, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|I Chain I, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|J Chain J, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|K Chain K, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|L Chain L, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
Length = 214
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 64 LVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE 108
+V+ T GT +++ HD NG EE++ +L+VP D+
Sbjct: 130 IVEDLSEFETNGTVNXLLY----HDANGDEEYYNRRAYLSVPLDK 170
>pdb|3RM5|A Chain A, Structure Of Trifunctional Thi20 From Yeast
pdb|3RM5|B Chain B, Structure Of Trifunctional Thi20 From Yeast
Length = 550
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 249 VLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHEL 308
VL+ G +++ GK+++SL K PF + I K G+ R+V ++ ++
Sbjct: 127 VLVATSGSSLA--GKDIVSLITEKVAPFADILTPNIPECYKLLGEE--RKVNGLQDIFQI 182
Query: 309 KLDMAKAYVCDCCKMRG 325
D+AK C ++G
Sbjct: 183 AKDLAKITKCSNILVKG 199
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLN 217
S +I + FGA WC PC I+ Y K N+ + V LV D D H + +
Sbjct: 36 SSTQNSSIVIKFGAVWCKPCNK-----IKEY--FKNQLNYYY-VTLVDIDVDIHPKLNDQ 87
Query: 218 HSI 220
H+I
Sbjct: 88 HNI 90
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 28.1 bits (61), Expect = 8.7, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
+ + G K + L WC P K P+ +L + L+VIF+ D ++
Sbjct: 19 VKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEY------LDVIFLKLDCNQ 65
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 27.7 bits (60), Expect = 9.0, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88
K + + F A WC PC+ P L + G ++E++ ++ D +
Sbjct: 24 KPVLVDFWAAWCGPCRQIAPSLEAI---AAEYGDKIEIVKLNIDEN 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,218,475
Number of Sequences: 62578
Number of extensions: 400659
Number of successful extensions: 1298
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 195
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)