Query 018726
Match_columns 351
No_of_seqs 374 out of 3375
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:31:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03009 TryX_like_TryX_NRX Try 99.9 5.8E-25 1.3E-29 176.4 12.5 130 146-276 1-131 (131)
2 cd03008 TryX_like_RdCVF Trypar 99.9 1.3E-24 2.9E-29 174.8 9.5 119 154-272 16-140 (146)
3 cd02964 TryX_like_family Trypa 99.9 3.1E-23 6.7E-28 166.5 11.6 126 149-276 4-132 (132)
4 PF08534 Redoxin: Redoxin; In 99.9 2.1E-21 4.5E-26 158.7 11.4 117 140-261 2-131 (146)
5 PRK14018 trifunctional thiored 99.8 1.1E-20 2.3E-25 180.6 14.6 117 139-260 33-155 (521)
6 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 1.4E-20 3E-25 149.3 10.0 116 140-260 1-124 (124)
7 PRK15412 thiol:disulfide inter 99.8 1.6E-20 3.5E-25 159.3 10.7 117 137-261 38-159 (185)
8 cd02967 mauD Methylamine utili 99.8 2.8E-20 6.1E-25 145.3 11.3 110 145-261 1-112 (114)
9 KOG2501 Thioredoxin, nucleored 99.8 3.2E-20 7E-25 147.6 11.0 121 150-271 19-142 (157)
10 PF13905 Thioredoxin_8: Thiore 99.8 5.6E-20 1.2E-24 138.8 11.7 93 163-257 1-95 (95)
11 cd03010 TlpA_like_DsbE TlpA-li 99.8 7.7E-20 1.7E-24 145.8 9.9 112 143-260 2-116 (127)
12 PLN02399 phospholipid hydroper 99.8 6.2E-20 1.4E-24 159.4 9.7 121 137-261 72-217 (236)
13 cd02969 PRX_like1 Peroxiredoxi 99.8 3.1E-19 6.6E-24 149.8 13.2 147 141-296 1-156 (171)
14 PRK03147 thiol-disulfide oxido 99.8 2.9E-19 6.2E-24 150.3 13.0 119 138-260 35-154 (173)
15 cd03012 TlpA_like_DipZ_like Tl 99.8 1.2E-19 2.6E-24 144.4 9.4 105 153-261 13-122 (126)
16 PTZ00056 glutathione peroxidas 99.8 1.8E-19 3.9E-24 154.1 10.9 120 138-261 13-161 (199)
17 TIGR00385 dsbE periplasmic pro 99.8 9E-20 1.9E-24 153.2 8.8 116 138-261 34-154 (173)
18 PLN02412 probable glutathione 99.8 1.1E-19 2.3E-24 151.6 9.1 116 142-261 7-147 (167)
19 cd03014 PRX_Atyp2cys Peroxired 99.8 3.7E-19 7.9E-24 144.9 11.8 116 140-261 2-126 (143)
20 PRK00522 tpx lipid hydroperoxi 99.8 4.1E-19 8.8E-24 148.1 11.9 118 138-261 18-147 (167)
21 TIGR02661 MauD methylamine deh 99.8 7.6E-19 1.7E-23 149.4 13.2 132 139-291 47-181 (189)
22 cd03015 PRX_Typ2cys Peroxiredo 99.8 1.2E-18 2.7E-23 146.3 13.1 119 140-261 1-136 (173)
23 cd00340 GSH_Peroxidase Glutath 99.8 1.6E-19 3.5E-24 148.4 7.2 113 144-261 2-139 (152)
24 PRK09437 bcp thioredoxin-depen 99.8 5.9E-19 1.3E-23 145.5 10.4 116 140-260 6-135 (154)
25 PTZ00102 disulphide isomerase; 99.8 2.4E-18 5.2E-23 167.6 15.9 72 162-258 374-445 (477)
26 cd03018 PRX_AhpE_like Peroxire 99.8 1.6E-18 3.6E-23 142.0 11.5 117 140-261 3-130 (149)
27 TIGR03137 AhpC peroxiredoxin. 99.8 2.2E-18 4.8E-23 146.4 12.4 120 139-261 3-135 (187)
28 cd03017 PRX_BCP Peroxiredoxin 99.8 1.6E-18 3.4E-23 140.5 9.8 114 143-261 2-126 (140)
29 PTZ00256 glutathione peroxidas 99.8 2E-18 4.3E-23 146.2 8.8 117 141-261 17-164 (183)
30 TIGR02187 GlrX_arch Glutaredox 99.8 3.7E-18 7.9E-23 148.4 10.6 173 40-256 17-197 (215)
31 KOG0190 Protein disulfide isom 99.8 2.9E-18 6.3E-23 160.9 10.4 80 35-116 35-117 (493)
32 PRK13190 putative peroxiredoxi 99.8 1.1E-17 2.4E-22 143.6 12.7 119 139-261 3-133 (202)
33 PRK10382 alkyl hydroperoxide r 99.8 1.3E-17 2.7E-22 140.8 12.5 120 139-261 3-135 (187)
34 TIGR02540 gpx7 putative glutat 99.7 1E-17 2.2E-22 137.9 10.7 112 146-261 4-136 (153)
35 cd02966 TlpA_like_family TlpA- 99.7 1.3E-17 2.8E-22 129.7 10.2 111 146-260 1-113 (116)
36 PRK13599 putative peroxiredoxi 99.7 2.1E-17 4.4E-22 142.7 12.1 119 139-260 3-134 (215)
37 COG1225 Bcp Peroxiredoxin [Pos 99.7 4.7E-17 1E-21 130.9 12.0 117 139-260 5-135 (157)
38 PRK15000 peroxidase; Provision 99.7 3.8E-17 8.2E-22 139.8 12.2 120 139-261 3-141 (200)
39 cd02971 PRX_family Peroxiredox 99.7 3.5E-17 7.7E-22 132.5 10.8 115 143-261 1-126 (140)
40 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 1.9E-17 4.2E-22 131.1 8.2 106 145-260 1-108 (123)
41 TIGR01626 ytfJ_HI0045 conserve 99.7 4.2E-17 9.2E-22 135.9 10.5 133 139-291 24-182 (184)
42 cd02968 SCO SCO (an acronym fo 99.7 8.1E-17 1.8E-21 130.8 11.7 117 143-260 1-139 (142)
43 cd03016 PRX_1cys Peroxiredoxin 99.7 1.3E-16 2.9E-21 137.2 12.8 118 140-261 1-133 (203)
44 PRK13191 putative peroxiredoxi 99.7 1.6E-16 3.5E-21 137.3 12.6 120 138-261 7-140 (215)
45 cd02970 PRX_like2 Peroxiredoxi 99.7 6.8E-17 1.5E-21 132.2 9.8 114 143-261 1-146 (149)
46 PTZ00137 2-Cys peroxiredoxin; 99.7 1.5E-16 3.3E-21 140.0 12.2 122 137-261 67-204 (261)
47 PLN02919 haloacid dehalogenase 99.7 1E-16 2.3E-21 167.5 12.7 117 140-260 393-518 (1057)
48 PTZ00253 tryparedoxin peroxida 99.7 2.9E-16 6.2E-21 134.8 13.2 120 139-261 7-143 (199)
49 PRK13728 conjugal transfer pro 99.7 1.1E-16 2.5E-21 132.5 9.2 97 141-259 52-151 (181)
50 PRK13189 peroxiredoxin; Provis 99.7 4.7E-16 1E-20 135.2 13.2 119 139-261 10-142 (222)
51 cd02950 TxlA TRX-like protein 99.7 9E-16 2E-20 124.2 12.0 75 161-260 18-92 (142)
52 KOG0191 Thioredoxin/protein di 99.6 2.5E-15 5.5E-20 141.9 13.8 181 41-256 46-230 (383)
53 TIGR01130 ER_PDI_fam protein d 99.6 3.2E-15 6.9E-20 145.0 14.9 65 40-106 16-81 (462)
54 PRK10606 btuE putative glutath 99.6 1.1E-14 2.4E-19 122.2 11.1 73 143-219 4-84 (183)
55 cd02985 TRX_CDSP32 TRX family, 99.6 1.7E-14 3.7E-19 110.4 10.8 75 160-260 12-86 (103)
56 cd02954 DIM1 Dim1 family; Dim1 99.6 1.1E-14 2.3E-19 111.7 9.4 72 162-261 13-84 (114)
57 KOG0910 Thioredoxin-like prote 99.6 6E-15 1.3E-19 116.5 7.5 77 162-273 60-136 (150)
58 cd03008 TryX_like_RdCVF Trypar 99.6 1.4E-14 3E-19 116.7 9.0 73 35-107 18-97 (146)
59 cd03009 TryX_like_TryX_NRX Try 99.6 1.3E-14 2.8E-19 116.2 8.5 82 26-107 1-83 (131)
60 KOG2501 Thioredoxin, nucleored 99.5 1.4E-14 3.1E-19 115.4 7.9 98 26-123 15-116 (157)
61 TIGR02738 TrbB type-F conjugat 99.5 1.8E-14 4E-19 117.4 8.0 86 153-259 44-133 (153)
62 PHA02278 thioredoxin-like prot 99.5 5E-14 1.1E-18 107.1 9.6 75 162-260 13-87 (103)
63 cd02948 TRX_NDPK TRX domain, T 99.5 9.8E-14 2.1E-18 106.0 10.7 71 162-260 16-86 (102)
64 COG0450 AhpC Peroxiredoxin [Po 99.5 1.5E-13 3.3E-18 113.0 12.0 120 138-260 3-139 (194)
65 cd02999 PDI_a_ERp44_like PDIa 99.5 7.3E-14 1.6E-18 106.1 9.4 69 159-255 14-82 (100)
66 cd02963 TRX_DnaJ TRX domain, D 99.5 1.1E-13 2.4E-18 107.4 10.5 73 161-260 22-94 (111)
67 cd02956 ybbN ybbN protein fami 99.5 2.3E-13 5.1E-18 102.7 10.6 71 162-260 11-81 (96)
68 cd02964 TryX_like_family Trypa 99.5 1.2E-13 2.6E-18 110.7 8.8 80 27-106 2-82 (132)
69 KOG0907 Thioredoxin [Posttrans 99.5 2.5E-13 5.4E-18 103.4 9.5 74 163-272 21-94 (106)
70 cd03013 PRX5_like Peroxiredoxi 99.5 3E-13 6.4E-18 111.2 9.7 117 140-261 1-137 (155)
71 cd03003 PDI_a_ERdj5_N PDIa fam 99.5 3E-13 6.4E-18 103.1 8.7 81 152-260 7-87 (101)
72 cd02951 SoxW SoxW family; SoxW 99.5 3.9E-13 8.4E-18 106.7 9.4 85 162-260 12-101 (125)
73 PHA02278 thioredoxin-like prot 99.4 9.2E-14 2E-18 105.7 4.9 81 41-124 13-98 (103)
74 PRK09381 trxA thioredoxin; Pro 99.4 1.2E-12 2.7E-17 101.1 11.3 71 162-260 20-90 (109)
75 cd02953 DsbDgamma DsbD gamma f 99.4 1.2E-12 2.6E-17 100.3 10.3 76 162-260 10-89 (104)
76 PF13905 Thioredoxin_8: Thiore 99.4 9E-13 2E-17 99.2 9.4 73 42-115 1-75 (95)
77 cd02959 ERp19 Endoplasmic reti 99.4 3E-13 6.5E-18 105.7 6.9 78 157-260 13-92 (117)
78 COG3118 Thioredoxin domain-con 99.4 9.8E-13 2.1E-17 115.0 9.3 71 162-260 42-112 (304)
79 cd02999 PDI_a_ERp44_like PDIa 99.4 3.7E-13 8.1E-18 102.2 5.8 78 39-121 15-94 (100)
80 cd03006 PDI_a_EFP1_N PDIa fami 99.4 1.7E-12 3.7E-17 100.4 9.3 69 162-258 28-97 (113)
81 cd03006 PDI_a_EFP1_N PDIa fami 99.4 6.5E-13 1.4E-17 102.7 6.8 80 40-122 27-108 (113)
82 cd02962 TMX2 TMX2 family; comp 99.4 2.1E-12 4.6E-17 105.0 10.1 74 162-262 46-125 (152)
83 PRK10996 thioredoxin 2; Provis 99.4 4E-12 8.6E-17 102.6 11.6 71 162-260 51-121 (139)
84 KOG0910 Thioredoxin-like prote 99.4 3.1E-13 6.7E-18 106.8 4.3 83 41-128 60-145 (150)
85 cd02994 PDI_a_TMX PDIa family, 99.4 3.3E-12 7.1E-17 97.3 9.9 68 162-257 16-83 (101)
86 PF13098 Thioredoxin_2: Thiore 99.4 2.7E-12 5.9E-17 99.7 9.5 95 162-260 4-98 (112)
87 cd02954 DIM1 Dim1 family; Dim1 99.4 4.3E-13 9.3E-18 102.9 4.1 75 41-119 13-89 (114)
88 PF02630 SCO1-SenC: SCO1/SenC; 99.4 7.6E-12 1.6E-16 104.9 12.0 120 140-260 28-170 (174)
89 TIGR02740 TraF-like TraF-like 99.4 2.2E-12 4.8E-17 115.4 9.2 89 153-259 156-244 (271)
90 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 1.3E-12 2.8E-17 99.6 6.5 86 31-120 6-94 (101)
91 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 4.4E-12 9.6E-17 97.1 9.5 72 162-260 18-89 (104)
92 cd02986 DLP Dim1 family, Dim1- 99.4 4.1E-12 8.9E-17 96.7 9.1 71 162-260 13-83 (114)
93 cd02957 Phd_like Phosducin (Ph 99.4 3.5E-12 7.6E-17 99.3 8.7 68 163-260 24-91 (113)
94 KOG0908 Thioredoxin-like prote 99.4 1.9E-12 4E-17 109.6 7.6 76 162-273 20-95 (288)
95 PLN00410 U5 snRNP protein, DIM 99.4 1E-11 2.2E-16 99.1 11.3 71 162-260 22-94 (142)
96 cd03000 PDI_a_TMX3 PDIa family 99.4 9.6E-12 2.1E-16 95.3 10.9 70 162-256 14-83 (104)
97 cd02985 TRX_CDSP32 TRX family, 99.4 7.2E-13 1.6E-17 101.3 4.5 73 40-116 13-89 (103)
98 cd02950 TxlA TRX-like protein 99.4 1.1E-12 2.3E-17 106.2 5.7 93 39-134 17-113 (142)
99 cd03002 PDI_a_MPD1_like PDI fa 99.3 6.5E-12 1.4E-16 97.0 9.5 69 162-255 17-85 (109)
100 cd02949 TRX_NTR TRX domain, no 99.3 1.2E-11 2.6E-16 93.5 10.7 71 162-260 12-82 (97)
101 cd02989 Phd_like_TxnDC9 Phosdu 99.3 9.2E-12 2E-16 96.7 10.2 70 162-260 21-90 (113)
102 cd03005 PDI_a_ERp46 PDIa famil 99.3 6.3E-12 1.4E-16 95.8 8.9 71 165-260 18-88 (102)
103 cd02965 HyaE HyaE family; HyaE 99.3 6.3E-12 1.4E-16 95.8 8.5 71 162-260 26-98 (111)
104 PTZ00062 glutaredoxin; Provisi 99.3 1.3E-11 2.7E-16 105.1 11.1 155 43-258 18-179 (204)
105 PF00085 Thioredoxin: Thioredo 99.3 1.5E-11 3.2E-16 93.7 10.5 70 163-260 17-86 (103)
106 cd02993 PDI_a_APS_reductase PD 99.3 7.6E-12 1.6E-16 96.7 8.6 72 162-258 20-92 (109)
107 cd02992 PDI_a_QSOX PDIa family 99.3 2.2E-11 4.9E-16 94.7 11.1 76 163-261 19-94 (114)
108 cd02984 TRX_PICOT TRX domain, 99.3 1.9E-11 4.2E-16 92.2 10.0 70 163-260 14-83 (97)
109 cd02996 PDI_a_ERp44 PDIa famil 99.3 8.4E-12 1.8E-16 96.3 8.2 73 162-258 17-91 (108)
110 cd03065 PDI_b_Calsequestrin_N 99.3 1.5E-11 3.3E-16 95.8 9.6 71 163-259 27-101 (120)
111 PTZ00056 glutathione peroxidas 99.3 6.3E-12 1.4E-16 107.6 8.1 71 28-100 24-102 (199)
112 cd02967 mauD Methylamine utili 99.3 1.3E-11 2.9E-16 96.0 8.8 69 28-100 5-75 (114)
113 TIGR01126 pdi_dom protein disu 99.3 2.3E-11 5E-16 92.5 9.6 70 162-256 12-81 (102)
114 cd02963 TRX_DnaJ TRX domain, D 99.3 4.8E-12 1E-16 98.1 5.8 83 40-125 22-106 (111)
115 cd00340 GSH_Peroxidase Glutath 99.3 1E-11 2.2E-16 102.0 7.7 75 27-104 6-91 (152)
116 cd02948 TRX_NDPK TRX domain, T 99.3 5.1E-12 1.1E-16 96.4 5.5 72 41-116 16-89 (102)
117 cd02956 ybbN ybbN protein fami 99.3 9.6E-12 2.1E-16 93.8 6.7 80 40-123 10-91 (96)
118 PTZ00051 thioredoxin; Provisio 99.3 2.7E-11 5.9E-16 91.6 9.2 70 162-260 17-86 (98)
119 KOG0907 Thioredoxin [Posttrans 99.3 2.8E-12 6.2E-17 97.6 3.4 73 40-117 19-93 (106)
120 TIGR01068 thioredoxin thioredo 99.3 6.2E-11 1.3E-15 89.9 10.9 70 163-260 14-83 (101)
121 PTZ00443 Thioredoxin domain-co 99.3 4E-11 8.6E-16 103.8 10.4 70 163-260 52-121 (224)
122 cd02997 PDI_a_PDIR PDIa family 99.3 3.1E-11 6.8E-16 92.2 8.6 75 162-260 16-90 (104)
123 cd02996 PDI_a_ERp44 PDIa famil 99.2 1.4E-11 2.9E-16 95.1 6.3 84 40-123 16-104 (108)
124 cd02955 SSP411 TRX domain, SSP 99.2 2.3E-10 4.9E-15 89.9 12.4 85 159-262 11-98 (124)
125 PLN02399 phospholipid hydroper 99.2 3.5E-11 7.7E-16 104.8 8.5 77 25-103 80-168 (236)
126 cd02952 TRP14_like Human TRX-r 99.2 3.4E-11 7.4E-16 93.5 7.2 78 162-259 20-105 (119)
127 cd03004 PDI_a_ERdj5_C PDIa fam 99.2 2.7E-11 5.9E-16 92.7 6.6 74 41-118 18-94 (104)
128 cd02987 Phd_like_Phd Phosducin 99.2 8.3E-11 1.8E-15 98.4 10.0 68 163-260 83-150 (175)
129 TIGR02540 gpx7 putative glutat 99.2 4.1E-11 9E-16 98.5 8.0 69 27-97 6-82 (153)
130 PLN02412 probable glutathione 99.2 4.5E-11 9.7E-16 99.6 8.0 57 28-86 14-71 (167)
131 cd03002 PDI_a_MPD1_like PDI fa 99.2 4.2E-11 9.1E-16 92.4 6.8 63 41-106 17-80 (109)
132 cd02993 PDI_a_APS_reductase PD 99.2 4.6E-11 9.9E-16 92.3 6.8 65 40-106 19-84 (109)
133 cd02986 DLP Dim1 family, Dim1- 99.2 6.1E-11 1.3E-15 90.3 7.0 65 41-109 13-79 (114)
134 PF08534 Redoxin: Redoxin; In 99.2 1.1E-10 2.4E-15 95.1 9.2 68 29-99 14-83 (146)
135 cd03001 PDI_a_P5 PDIa family, 99.2 2.7E-10 5.8E-15 86.9 10.6 65 163-255 18-82 (103)
136 cd03000 PDI_a_TMX3 PDIa family 99.2 5.8E-11 1.3E-15 90.9 6.8 81 41-123 14-96 (104)
137 cd02961 PDI_a_family Protein D 99.2 1.3E-10 2.7E-15 87.9 8.1 74 162-260 14-87 (101)
138 cd03005 PDI_a_ERp46 PDIa famil 99.2 5.1E-11 1.1E-15 90.7 5.9 77 44-121 18-96 (102)
139 cd02998 PDI_a_ERp38 PDIa famil 99.2 2.1E-10 4.6E-15 87.6 9.3 72 163-258 18-89 (105)
140 PRK09381 trxA thioredoxin; Pro 99.2 4.1E-11 9E-16 92.6 5.1 96 27-126 4-103 (109)
141 COG3118 Thioredoxin domain-con 99.1 5.5E-11 1.2E-15 104.2 6.1 87 40-130 41-129 (304)
142 PLN00410 U5 snRNP protein, DIM 99.1 8.2E-11 1.8E-15 93.9 5.9 66 40-109 21-89 (142)
143 cd02959 ERp19 Endoplasmic reti 99.1 6E-11 1.3E-15 92.6 4.9 79 35-116 12-95 (117)
144 cd03012 TlpA_like_DipZ_like Tl 99.1 1.7E-10 3.7E-15 91.5 7.6 66 33-100 13-84 (126)
145 cd02994 PDI_a_TMX PDIa family, 99.1 1E-10 2.2E-15 89.1 6.0 79 40-123 15-95 (101)
146 cd02995 PDI_a_PDI_a'_C PDIa fa 99.1 1E-10 2.2E-15 89.4 5.9 63 41-106 17-79 (104)
147 COG1999 Uncharacterized protei 99.1 2.1E-09 4.7E-14 92.3 14.8 115 146-260 49-186 (207)
148 PRK14018 trifunctional thiored 99.1 1.7E-10 3.6E-15 111.0 8.5 54 28-85 43-97 (521)
149 cd02953 DsbDgamma DsbD gamma f 99.1 1.8E-10 4E-15 88.1 7.0 82 40-124 9-100 (104)
150 PF00085 Thioredoxin: Thioredo 99.1 7E-11 1.5E-15 89.9 4.5 82 41-127 16-100 (103)
151 PTZ00062 glutaredoxin; Provisi 99.1 2.7E-10 5.9E-15 97.0 8.5 108 164-323 18-133 (204)
152 PTZ00256 glutathione peroxidas 99.1 2.2E-10 4.8E-15 97.0 8.0 57 28-86 25-83 (183)
153 cd03010 TlpA_like_DsbE TlpA-li 99.1 2.2E-10 4.8E-15 91.0 7.4 75 28-107 8-87 (127)
154 cd02968 SCO SCO (an acronym fo 99.1 6E-10 1.3E-14 90.2 10.0 80 28-107 7-94 (142)
155 TIGR01295 PedC_BrcD bacterioci 99.1 8.8E-10 1.9E-14 86.7 10.2 79 162-260 22-105 (122)
156 cd02975 PfPDO_like_N Pyrococcu 99.1 5.7E-10 1.2E-14 86.7 8.8 63 163-253 22-84 (113)
157 KOG0190 Protein disulfide isom 99.1 8.4E-11 1.8E-15 111.0 4.7 111 5-129 355-471 (493)
158 PRK10996 thioredoxin 2; Provis 99.1 1.8E-10 3.8E-15 93.0 5.8 82 40-125 50-133 (139)
159 cd02962 TMX2 TMX2 family; comp 99.1 1.3E-10 2.9E-15 94.4 5.1 74 40-116 45-126 (152)
160 TIGR02187 GlrX_arch Glutaredox 99.1 2.4E-10 5.3E-15 99.3 7.0 70 162-258 18-90 (215)
161 cd02988 Phd_like_VIAF Phosduci 99.1 6.5E-10 1.4E-14 94.3 9.1 66 163-260 102-167 (192)
162 cd02951 SoxW SoxW family; SoxW 99.1 2.3E-10 5E-15 90.7 5.8 84 40-126 11-114 (125)
163 PRK03147 thiol-disulfide oxido 99.1 8.2E-10 1.8E-14 92.6 9.4 72 28-101 46-118 (173)
164 cd02992 PDI_a_QSOX PDIa family 99.1 5.4E-10 1.2E-14 86.9 7.3 66 41-106 18-84 (114)
165 KOG2792 Putative cytochrome C 99.0 2.8E-09 6.1E-14 91.0 12.0 119 146-264 121-261 (280)
166 PRK10606 btuE putative glutath 99.0 5.3E-10 1.1E-14 94.0 7.6 67 28-97 10-84 (183)
167 PF00578 AhpC-TSA: AhpC/TSA fa 99.0 1.8E-09 3.9E-14 85.2 10.1 77 25-104 6-87 (124)
168 cd02997 PDI_a_PDIR PDIa family 99.0 3.2E-10 6.9E-15 86.6 5.0 76 40-116 15-93 (104)
169 TIGR00411 redox_disulf_1 small 99.0 3.1E-09 6.7E-14 77.4 10.0 62 166-257 2-63 (82)
170 TIGR01126 pdi_dom protein disu 99.0 4.4E-10 9.6E-15 85.4 5.6 83 41-126 12-97 (102)
171 PTZ00443 Thioredoxin domain-co 99.0 3.3E-10 7.2E-15 98.0 5.4 84 41-129 51-137 (224)
172 TIGR00424 APS_reduc 5'-adenyly 99.0 2E-09 4.3E-14 102.4 10.7 71 161-256 369-439 (463)
173 cd02949 TRX_NTR TRX domain, no 99.0 5.6E-10 1.2E-14 84.3 5.7 79 41-123 12-92 (97)
174 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 2.2E-09 4.7E-14 81.9 9.1 67 163-256 18-84 (104)
175 PRK15412 thiol:disulfide inter 99.0 8.6E-10 1.9E-14 93.6 7.3 74 28-107 50-129 (185)
176 TIGR02661 MauD methylamine deh 99.0 1.5E-09 3.3E-14 92.3 8.8 73 23-101 51-127 (189)
177 KOG0852 Alkyl hydroperoxide re 99.0 5.4E-09 1.2E-13 84.0 10.9 118 141-261 7-140 (196)
178 cd02957 Phd_like Phosducin (Ph 99.0 3E-10 6.6E-15 88.3 3.8 69 42-116 24-94 (113)
179 cd02998 PDI_a_ERp38 PDIa famil 99.0 9.5E-10 2E-14 84.0 6.5 63 41-106 17-81 (105)
180 COG0386 BtuE Glutathione perox 99.0 1.2E-08 2.7E-13 80.5 12.4 114 144-261 5-143 (162)
181 cd02965 HyaE HyaE family; HyaE 99.0 6.1E-10 1.3E-14 84.9 4.9 73 40-116 25-101 (111)
182 cd02947 TRX_family TRX family; 99.0 4E-09 8.7E-14 78.0 9.3 69 163-260 10-78 (93)
183 PRK00293 dipZ thiol:disulfide 99.0 2.1E-09 4.7E-14 106.2 9.4 76 159-258 470-548 (571)
184 cd02966 TlpA_like_family TlpA- 99.0 2.7E-09 5.8E-14 82.4 7.8 72 28-101 4-77 (116)
185 TIGR00424 APS_reduc 5'-adenyly 98.9 1E-09 2.2E-14 104.3 6.2 65 40-106 369-434 (463)
186 cd03001 PDI_a_P5 PDIa family, 98.9 1.9E-09 4.2E-14 82.1 6.5 62 41-106 17-78 (103)
187 PLN02919 haloacid dehalogenase 98.9 1.4E-09 3.1E-14 114.4 7.7 53 31-85 407-461 (1057)
188 cd02960 AGR Anterior Gradient 98.9 4.8E-09 1E-13 82.4 8.4 101 159-291 19-122 (130)
189 TIGR01068 thioredoxin thioredo 98.9 2.2E-09 4.8E-14 81.2 6.3 73 41-117 13-87 (101)
190 KOG0908 Thioredoxin-like prote 98.9 5.6E-10 1.2E-14 94.8 3.2 76 35-116 14-92 (288)
191 cd03014 PRX_Atyp2cys Peroxired 98.9 3.3E-09 7.2E-14 86.0 7.6 68 28-100 11-80 (143)
192 TIGR01626 ytfJ_HI0045 conserve 98.9 3.3E-09 7.2E-14 88.7 7.7 92 11-108 24-133 (184)
193 PLN02309 5'-adenylylsulfate re 98.9 8.7E-09 1.9E-13 98.0 11.3 66 162-252 364-430 (457)
194 cd02969 PRX_like1 Peroxiredoxi 98.9 4.5E-09 9.7E-14 88.0 8.4 73 28-102 9-90 (171)
195 PRK00522 tpx lipid hydroperoxi 98.9 4.1E-09 8.8E-14 87.9 7.8 72 25-101 25-99 (167)
196 cd03017 PRX_BCP Peroxiredoxin 98.9 5.3E-09 1.1E-13 84.4 8.1 71 27-100 7-79 (140)
197 cd02984 TRX_PICOT TRX domain, 98.9 1.6E-09 3.5E-14 81.6 4.7 67 42-113 14-83 (97)
198 cd03065 PDI_b_Calsequestrin_N 98.9 1.8E-09 3.8E-14 84.2 4.9 81 41-126 26-114 (120)
199 cd02952 TRP14_like Human TRX-r 98.9 3.3E-09 7.1E-14 82.4 6.2 63 41-106 20-96 (119)
200 TIGR01295 PedC_BrcD bacterioci 98.9 2.2E-09 4.7E-14 84.4 5.2 71 41-116 22-108 (122)
201 cd03015 PRX_Typ2cys Peroxiredo 98.9 7.2E-09 1.6E-13 87.0 8.6 60 28-89 10-75 (173)
202 cd02989 Phd_like_TxnDC9 Phosdu 98.9 1.6E-09 3.4E-14 84.1 4.3 71 41-116 21-93 (113)
203 PTZ00102 disulphide isomerase; 98.9 1.2E-08 2.6E-13 99.6 11.2 84 150-257 36-119 (477)
204 TIGR01130 ER_PDI_fam protein d 98.9 9.5E-09 2.1E-13 99.7 10.4 71 162-257 17-87 (462)
205 PRK09437 bcp thioredoxin-depen 98.9 8.3E-09 1.8E-13 84.8 8.2 70 28-100 15-86 (154)
206 cd02987 Phd_like_Phd Phosducin 98.9 1.9E-09 4E-14 90.3 4.2 69 42-116 83-153 (175)
207 PTZ00051 thioredoxin; Provisio 98.9 2.1E-09 4.5E-14 81.2 4.1 70 41-116 17-89 (98)
208 cd03018 PRX_AhpE_like Peroxire 98.9 1E-08 2.2E-13 83.7 8.3 70 28-100 12-84 (149)
209 TIGR02738 TrbB type-F conjugat 98.8 6.6E-09 1.4E-13 84.8 6.8 42 42-88 50-91 (153)
210 cd03011 TlpA_like_ScsD_MtbDsbE 98.8 9.7E-09 2.1E-13 81.0 7.3 66 28-100 5-72 (123)
211 TIGR00385 dsbE periplasmic pro 98.8 1.1E-08 2.3E-13 85.9 7.9 78 24-107 40-124 (173)
212 PF07649 C1_3: C1-like domain; 98.8 7.6E-10 1.6E-14 63.9 0.5 29 316-344 1-30 (30)
213 KOG0855 Alkyl hydroperoxide re 98.8 8.2E-09 1.8E-13 82.2 6.5 119 133-256 58-186 (211)
214 TIGR03137 AhpC peroxiredoxin. 98.8 1.1E-08 2.4E-13 86.8 7.9 65 23-89 7-77 (187)
215 cd02973 TRX_GRX_like Thioredox 98.8 2.1E-08 4.5E-13 70.0 7.9 64 166-260 2-65 (67)
216 PLN02309 5'-adenylylsulfate re 98.8 6.5E-09 1.4E-13 98.9 6.7 65 40-106 363-428 (457)
217 cd02971 PRX_family Peroxiredox 98.8 1.7E-08 3.7E-13 81.4 8.3 70 27-99 6-77 (140)
218 PHA02125 thioredoxin-like prot 98.8 3.6E-08 7.8E-13 70.5 8.8 57 167-260 2-58 (75)
219 cd02982 PDI_b'_family Protein 98.8 3.4E-08 7.3E-13 75.2 9.0 65 162-253 11-77 (103)
220 cd02958 UAS UAS family; UAS is 98.8 7.2E-08 1.6E-12 75.0 11.0 77 159-260 13-93 (114)
221 TIGR00412 redox_disulf_2 small 98.8 2.7E-08 5.8E-13 71.4 7.4 60 168-260 3-62 (76)
222 PRK13728 conjugal transfer pro 98.8 1.1E-08 2.3E-13 85.1 6.0 56 25-89 55-111 (181)
223 cd02961 PDI_a_family Protein D 98.8 1.3E-08 2.9E-13 76.6 5.7 64 40-106 13-77 (101)
224 cd02975 PfPDO_like_N Pyrococcu 98.8 1.3E-08 2.8E-13 79.1 5.4 61 41-106 21-81 (113)
225 KOG4277 Uncharacterized conser 98.7 7.4E-09 1.6E-13 90.2 3.8 73 41-115 42-116 (468)
226 COG2077 Tpx Peroxiredoxin [Pos 98.7 1.6E-07 3.4E-12 74.1 10.9 118 138-261 18-147 (158)
227 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 4.8E-08 1.1E-12 72.2 7.6 71 159-260 8-78 (89)
228 TIGR02740 TraF-like TraF-like 98.7 1.5E-08 3.2E-13 90.8 5.8 67 35-106 159-235 (271)
229 KOG1651 Glutathione peroxidase 98.7 8.8E-08 1.9E-12 76.7 8.9 114 144-260 14-151 (171)
230 KOG1731 FAD-dependent sulfhydr 98.7 2E-08 4.4E-13 95.0 6.2 64 43-106 58-122 (606)
231 cd02970 PRX_like2 Peroxiredoxi 98.7 5.3E-08 1.2E-12 79.3 7.8 69 28-99 7-78 (149)
232 TIGR00411 redox_disulf_1 small 98.7 3.4E-08 7.3E-13 71.8 5.4 61 45-109 2-62 (82)
233 KOG0912 Thiol-disulfide isomer 98.7 5E-08 1.1E-12 85.3 7.1 88 41-128 12-103 (375)
234 cd03007 PDI_a_ERp29_N PDIa fam 98.7 7.7E-08 1.7E-12 74.2 7.3 71 162-256 17-91 (116)
235 KOG4277 Uncharacterized conser 98.7 1.6E-08 3.4E-13 88.2 3.6 77 163-263 43-119 (468)
236 PF13728 TraF: F plasmid trans 98.6 1.9E-07 4.1E-12 80.8 9.3 86 157-260 114-199 (215)
237 KOG0191 Thioredoxin/protein di 98.6 9.5E-08 2.1E-12 90.5 8.2 70 163-259 47-116 (383)
238 KOG0912 Thiol-disulfide isomer 98.6 1.5E-07 3.2E-12 82.5 8.5 75 163-260 13-87 (375)
239 cd02988 Phd_like_VIAF Phosduci 98.6 2.1E-08 4.5E-13 85.1 3.2 68 41-116 101-170 (192)
240 PRK13599 putative peroxiredoxi 98.6 1.6E-07 3.6E-12 81.2 8.3 75 21-97 5-84 (215)
241 PRK13190 putative peroxiredoxi 98.6 1.8E-07 4E-12 80.3 8.4 63 25-89 9-73 (202)
242 PRK10382 alkyl hydroperoxide r 98.6 1.9E-07 4.2E-12 78.9 7.9 53 35-89 24-77 (187)
243 cd02955 SSP411 TRX domain, SSP 98.6 1.8E-07 3.8E-12 73.5 7.0 69 35-106 8-86 (124)
244 TIGR00412 redox_disulf_2 small 98.6 1.1E-07 2.3E-12 68.2 5.1 59 46-111 2-60 (76)
245 PF03107 C1_2: C1 domain; Int 98.6 3.1E-08 6.8E-13 57.0 1.8 29 316-344 1-30 (30)
246 cd02947 TRX_family TRX family; 98.6 1E-07 2.2E-12 70.3 5.0 64 41-109 9-74 (93)
247 PF13098 Thioredoxin_2: Thiore 98.6 5E-08 1.1E-12 75.5 3.3 84 40-123 3-108 (112)
248 PF14595 Thioredoxin_9: Thiore 98.5 2.7E-07 5.9E-12 73.0 6.6 74 159-260 37-113 (129)
249 cd02982 PDI_b'_family Protein 98.5 2.1E-07 4.5E-12 70.8 5.7 60 42-106 12-74 (103)
250 PRK13191 putative peroxiredoxi 98.5 4.4E-07 9.4E-12 78.6 8.4 66 23-90 12-80 (215)
251 smart00594 UAS UAS domain. 98.5 6.5E-07 1.4E-11 70.5 8.6 74 157-255 21-97 (122)
252 PF13899 Thioredoxin_7: Thiore 98.5 2.9E-07 6.3E-12 67.1 6.2 65 37-106 12-79 (82)
253 PF02630 SCO1-SenC: SCO1/SenC; 98.5 9.2E-07 2E-11 74.1 9.7 75 26-100 35-114 (174)
254 cd03016 PRX_1cys Peroxiredoxin 98.5 5E-07 1.1E-11 77.8 8.3 60 28-89 10-71 (203)
255 KOG0854 Alkyl hydroperoxide re 98.5 2E-06 4.4E-11 69.3 11.0 118 140-260 8-146 (224)
256 PF13899 Thioredoxin_7: Thiore 98.5 2.3E-07 5E-12 67.6 5.2 65 161-253 15-82 (82)
257 TIGR02739 TraF type-F conjugat 98.5 8E-07 1.7E-11 78.2 9.3 86 157-260 144-229 (256)
258 PRK13703 conjugal pilus assemb 98.4 1.2E-06 2.7E-11 76.6 9.4 86 157-260 137-222 (248)
259 PTZ00253 tryparedoxin peroxida 98.4 7E-07 1.5E-11 76.6 7.6 59 30-90 23-83 (199)
260 PRK00293 dipZ thiol:disulfide 98.4 2.5E-07 5.4E-12 91.7 5.3 84 37-124 469-563 (571)
261 PHA02125 thioredoxin-like prot 98.4 3E-07 6.4E-12 65.8 4.0 49 46-105 2-51 (75)
262 cd02960 AGR Anterior Gradient 98.4 3.4E-07 7.3E-12 72.0 4.5 77 35-116 16-98 (130)
263 cd03007 PDI_a_ERp29_N PDIa fam 98.4 3.7E-07 8E-12 70.4 4.6 81 41-127 17-112 (116)
264 PF00255 GSHPx: Glutathione pe 98.4 1.9E-06 4E-11 65.7 8.3 60 146-209 3-63 (108)
265 PTZ00137 2-Cys peroxiredoxin; 98.4 9.3E-07 2E-11 78.3 7.3 52 35-88 90-143 (261)
266 PRK13189 peroxiredoxin; Provis 98.4 1.5E-06 3.3E-11 75.6 8.6 65 23-89 14-81 (222)
267 COG1225 Bcp Peroxiredoxin [Pos 98.4 1.9E-06 4.2E-11 69.7 8.5 75 23-100 9-86 (157)
268 PRK15000 peroxidase; Provision 98.4 1.4E-06 3.1E-11 74.6 8.1 47 41-89 33-80 (200)
269 cd02973 TRX_GRX_like Thioredox 98.4 1E-06 2.2E-11 61.4 5.6 60 45-109 2-61 (67)
270 KOG1731 FAD-dependent sulfhydr 98.3 4.8E-07 1E-11 85.9 3.6 69 164-254 58-126 (606)
271 PF00837 T4_deiodinase: Iodoth 98.3 2.4E-06 5.1E-11 73.4 6.8 119 137-262 72-218 (237)
272 COG0526 TrxA Thiol-disulfide i 98.2 5.8E-06 1.3E-10 63.4 7.7 69 157-251 26-96 (127)
273 COG0526 TrxA Thiol-disulfide i 98.2 5.1E-06 1.1E-10 63.7 7.3 68 40-110 30-101 (127)
274 cd01659 TRX_superfamily Thiore 98.2 9.6E-06 2.1E-10 54.8 7.7 63 167-254 1-63 (69)
275 cd03026 AhpF_NTD_C TRX-GRX-lik 98.1 5.5E-06 1.2E-10 61.2 5.4 67 38-109 8-74 (89)
276 PF03190 Thioredox_DsbH: Prote 98.1 2.7E-05 5.9E-10 63.5 9.7 87 154-260 28-118 (163)
277 COG1999 Uncharacterized protei 98.1 1.9E-05 4.1E-10 67.9 8.6 73 25-97 49-127 (207)
278 TIGR03143 AhpF_homolog putativ 98.1 5.3E-05 1.2E-09 75.3 12.7 175 38-260 362-542 (555)
279 PRK11509 hydrogenase-1 operon 98.0 7.5E-05 1.6E-09 58.9 10.5 70 164-260 35-106 (132)
280 KOG2792 Putative cytochrome C 97.9 4.2E-05 9E-10 65.9 7.7 89 15-105 112-206 (280)
281 KOG0914 Thioredoxin-like prote 97.9 1.9E-05 4.1E-10 66.2 5.3 93 162-283 143-242 (265)
282 cd03013 PRX5_like Peroxiredoxi 97.9 4.8E-05 1E-09 62.5 7.7 60 28-89 10-77 (155)
283 COG4232 Thiol:disulfide interc 97.9 2.7E-05 5.8E-10 75.0 6.5 76 162-259 473-549 (569)
284 TIGR02200 GlrX_actino Glutared 97.9 0.0001 2.2E-09 52.5 7.9 63 167-260 2-65 (77)
285 cd02958 UAS UAS family; UAS is 97.8 2.6E-05 5.7E-10 60.5 4.9 84 35-123 10-103 (114)
286 PF06110 DUF953: Eukaryotic pr 97.8 4.4E-05 9.6E-10 59.1 6.0 77 162-258 18-103 (119)
287 COG2143 Thioredoxin-related pr 97.8 0.00021 4.5E-09 56.9 9.5 89 160-260 39-131 (182)
288 cd02340 ZZ_NBR1_like Zinc fing 97.8 1E-05 2.3E-10 50.6 1.5 30 317-346 2-32 (43)
289 cd02991 UAS_ETEA UAS family, E 97.7 0.00029 6.3E-09 54.7 9.2 75 160-260 14-95 (116)
290 TIGR02196 GlrX_YruB Glutaredox 97.7 0.00022 4.7E-09 50.1 7.2 55 167-250 2-56 (74)
291 KOG3425 Uncharacterized conser 97.7 0.00013 2.8E-09 55.3 6.1 72 162-253 24-104 (128)
292 PRK15317 alkyl hydroperoxide r 97.6 0.0013 2.8E-08 64.9 14.3 71 159-260 112-182 (517)
293 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00017 3.7E-09 52.3 6.1 60 167-250 1-60 (84)
294 PF00255 GSHPx: Glutathione pe 97.6 0.00036 7.7E-09 53.2 7.9 57 28-87 6-63 (108)
295 TIGR02200 GlrX_actino Glutared 97.6 0.00012 2.7E-09 52.0 4.5 53 46-107 2-58 (77)
296 cd01659 TRX_superfamily Thiore 97.5 0.00024 5.1E-09 47.7 5.7 57 46-106 1-59 (69)
297 PRK11657 dsbG disulfide isomer 97.5 0.00068 1.5E-08 60.2 9.9 93 162-260 116-235 (251)
298 PF13192 Thioredoxin_3: Thiore 97.5 0.00085 1.9E-08 47.8 8.5 57 171-260 6-62 (76)
299 cd02339 ZZ_Mind_bomb Zinc fing 97.5 4.5E-05 9.9E-10 48.1 1.4 29 317-345 2-32 (45)
300 TIGR03140 AhpF alkyl hydropero 97.4 0.0037 7.9E-08 61.7 14.6 70 159-259 113-182 (515)
301 KOG0911 Glutaredoxin-related p 97.4 0.00095 2.1E-08 56.7 8.5 71 41-117 16-89 (227)
302 TIGR02180 GRX_euk Glutaredoxin 97.4 0.00027 5.9E-09 51.2 4.7 59 46-109 1-63 (84)
303 PRK10877 protein disulfide iso 97.4 0.0016 3.5E-08 57.1 10.0 88 162-258 106-214 (232)
304 TIGR02196 GlrX_YruB Glutaredox 97.4 0.00046 1E-08 48.3 5.4 54 46-108 2-58 (74)
305 PF14595 Thioredoxin_9: Thiore 97.3 0.0002 4.2E-09 56.8 3.1 66 37-106 36-103 (129)
306 smart00594 UAS UAS domain. 97.3 0.00094 2E-08 52.4 7.0 67 35-106 20-92 (122)
307 PF03190 Thioredox_DsbH: Prote 97.3 0.00054 1.2E-08 56.0 5.4 67 35-106 30-108 (163)
308 cd03020 DsbA_DsbC_DsbG DsbA fa 97.3 0.0027 5.8E-08 54.3 10.1 89 162-258 76-184 (197)
309 cd02342 ZZ_UBA_plant Zinc fing 97.2 0.00014 3E-09 44.6 1.3 29 317-345 2-32 (43)
310 PRK11200 grxA glutaredoxin 1; 97.2 0.0028 6.1E-08 46.2 8.4 65 167-258 3-69 (85)
311 PF00462 Glutaredoxin: Glutare 97.2 0.0026 5.7E-08 42.9 7.7 55 167-250 1-55 (60)
312 COG0386 BtuE Glutathione perox 97.2 0.0011 2.4E-08 52.8 6.4 68 27-97 9-84 (162)
313 COG4232 Thiol:disulfide interc 97.1 0.00035 7.7E-09 67.5 3.6 62 41-106 473-540 (569)
314 cd02341 ZZ_ZZZ3 Zinc finger, Z 97.1 0.00024 5.2E-09 45.4 1.5 31 316-346 1-35 (48)
315 cd02249 ZZ Zinc finger, ZZ typ 97.1 0.00023 4.9E-09 45.4 1.3 31 316-346 1-32 (46)
316 PRK11200 grxA glutaredoxin 1; 97.1 0.0011 2.4E-08 48.3 5.1 61 46-110 3-68 (85)
317 cd02344 ZZ_HERC2 Zinc finger, 96.9 0.00045 9.7E-09 43.4 1.6 29 317-345 2-32 (45)
318 PF02114 Phosducin: Phosducin; 96.9 0.0047 1E-07 55.1 8.3 69 162-260 145-213 (265)
319 cd03019 DsbA_DsbA DsbA family, 96.9 0.0066 1.4E-07 50.7 8.9 42 162-207 14-55 (178)
320 PF13728 TraF: F plasmid trans 96.9 0.0021 4.6E-08 55.6 5.8 65 37-106 115-189 (215)
321 smart00291 ZnF_ZZ Zinc-binding 96.8 0.00066 1.4E-08 42.8 1.5 31 315-345 4-35 (44)
322 cd02972 DsbA_family DsbA famil 96.8 0.0036 7.8E-08 46.1 5.9 82 167-252 1-91 (98)
323 cd02335 ZZ_ADA2 Zinc finger, Z 96.8 0.00073 1.6E-08 43.6 1.7 30 316-345 1-32 (49)
324 cd02343 ZZ_EF Zinc finger, ZZ 96.7 0.00059 1.3E-08 43.3 1.0 28 317-344 2-30 (48)
325 cd02334 ZZ_dystrophin Zinc fin 96.7 0.001 2.2E-08 42.7 1.8 29 317-345 2-32 (49)
326 PF09695 YtfJ_HI0045: Bacteria 96.7 0.038 8.3E-07 44.6 11.1 120 154-289 28-158 (160)
327 KOG1651 Glutathione peroxidase 96.7 0.0056 1.2E-07 49.5 6.2 57 28-86 19-76 (171)
328 PF00462 Glutaredoxin: Glutare 96.6 0.0068 1.5E-07 40.8 5.8 55 46-109 1-58 (60)
329 PF04592 SelP_N: Selenoprotein 96.6 0.015 3.3E-07 49.9 9.1 114 143-260 9-125 (238)
330 KOG0911 Glutaredoxin-related p 96.6 0.0015 3.3E-08 55.5 3.0 70 162-260 16-85 (227)
331 PF00569 ZZ: Zinc finger, ZZ t 96.6 0.00046 9.9E-09 43.9 -0.1 31 315-345 4-36 (46)
332 PF06110 DUF953: Eukaryotic pr 96.6 0.0073 1.6E-07 46.8 6.4 64 40-106 17-95 (119)
333 KOG0914 Thioredoxin-like prote 96.6 0.0026 5.6E-08 53.6 4.1 47 37-85 139-185 (265)
334 COG1331 Highly conserved prote 96.5 0.0078 1.7E-07 59.4 7.6 112 156-289 36-151 (667)
335 cd02976 NrdH NrdH-redoxin (Nrd 96.4 0.0095 2.1E-07 41.4 5.8 54 46-108 2-58 (73)
336 cd03419 GRX_GRXh_1_2_like Glut 96.4 0.0066 1.4E-07 43.6 4.9 58 167-250 2-59 (82)
337 cd02345 ZZ_dah Zinc finger, ZZ 96.4 0.0022 4.8E-08 41.3 2.0 29 317-345 2-32 (49)
338 cd02338 ZZ_PCMF_like Zinc fing 96.3 0.0027 5.8E-08 41.0 2.1 29 317-345 2-32 (49)
339 PF13192 Thioredoxin_3: Thiore 96.3 0.015 3.3E-07 41.3 6.2 56 47-109 3-58 (76)
340 PF11009 DUF2847: Protein of u 96.3 0.029 6.4E-07 42.3 7.8 75 163-261 19-94 (105)
341 KOG0855 Alkyl hydroperoxide re 96.3 0.014 2.9E-07 47.2 6.2 65 23-89 68-136 (211)
342 PF05176 ATP-synt_10: ATP10 pr 96.2 0.063 1.4E-06 47.6 11.0 135 141-288 98-249 (252)
343 cd03419 GRX_GRXh_1_2_like Glut 96.2 0.0085 1.8E-07 43.0 4.7 57 46-109 2-62 (82)
344 cd02066 GRX_family Glutaredoxi 96.2 0.041 8.8E-07 37.8 7.9 60 167-258 2-61 (72)
345 cd02976 NrdH NrdH-redoxin (Nrd 96.2 0.029 6.2E-07 38.8 7.0 55 167-250 2-56 (73)
346 TIGR02183 GRXA Glutaredoxin, G 96.1 0.014 3.1E-07 42.6 5.3 60 167-250 2-63 (86)
347 COG0450 AhpC Peroxiredoxin [Po 96.1 0.032 6.9E-07 46.7 7.6 53 35-89 26-79 (194)
348 cd02066 GRX_family Glutaredoxi 96.0 0.013 2.8E-07 40.4 4.5 55 46-109 2-59 (72)
349 cd02337 ZZ_CBP Zinc finger, ZZ 95.9 0.0027 5.9E-08 39.2 0.4 29 316-345 1-30 (41)
350 TIGR02739 TraF type-F conjugat 95.9 0.015 3.3E-07 51.4 5.2 65 37-106 145-219 (256)
351 PRK13703 conjugal pilus assemb 95.9 0.014 2.9E-07 51.4 4.9 46 37-87 138-183 (248)
352 COG0678 AHP1 Peroxiredoxin [Po 95.7 0.055 1.2E-06 43.1 7.2 117 139-261 4-145 (165)
353 cd03023 DsbA_Com1_like DsbA fa 95.7 0.022 4.8E-07 46.0 5.2 41 41-85 4-44 (154)
354 KOG3425 Uncharacterized conser 95.6 0.031 6.8E-07 42.7 5.3 43 41-86 24-74 (128)
355 PF13848 Thioredoxin_6: Thiore 95.6 0.15 3.2E-06 42.6 10.0 151 59-257 7-164 (184)
356 PF05988 DUF899: Bacterial pro 95.6 0.054 1.2E-06 46.0 7.1 110 145-259 47-170 (211)
357 TIGR02190 GlrX-dom Glutaredoxi 95.5 0.068 1.5E-06 38.2 6.6 57 164-250 7-63 (79)
358 cd03418 GRX_GRXb_1_3_like Glut 95.4 0.092 2E-06 36.8 7.1 55 167-250 2-57 (75)
359 TIGR02183 GRXA Glutaredoxin, G 95.4 0.028 6E-07 41.0 4.4 60 46-109 2-66 (86)
360 TIGR02194 GlrX_NrdH Glutaredox 95.4 0.11 2.4E-06 36.3 7.3 53 168-250 2-54 (72)
361 PHA03050 glutaredoxin; Provisi 95.4 0.044 9.5E-07 41.9 5.5 62 166-250 14-75 (108)
362 cd03023 DsbA_Com1_like DsbA fa 95.4 0.04 8.6E-07 44.5 5.7 32 162-193 4-35 (154)
363 TIGR02189 GlrX-like_plant Glut 95.2 0.082 1.8E-06 39.7 6.5 21 167-187 10-30 (99)
364 KOG0913 Thiol-disulfide isomer 95.2 0.0021 4.5E-08 54.9 -2.4 78 41-123 39-118 (248)
365 PF13462 Thioredoxin_4: Thiore 95.1 0.1 2.3E-06 42.5 7.6 49 158-208 7-55 (162)
366 cd03027 GRX_DEP Glutaredoxin ( 95.1 0.13 2.8E-06 36.0 7.0 55 167-250 3-57 (73)
367 TIGR02181 GRX_bact Glutaredoxi 95.0 0.028 6E-07 40.1 3.3 55 167-250 1-55 (79)
368 PF13462 Thioredoxin_4: Thiore 94.9 0.094 2E-06 42.8 6.7 53 36-89 6-58 (162)
369 TIGR02181 GRX_bact Glutaredoxi 94.9 0.051 1.1E-06 38.7 4.5 54 47-109 2-58 (79)
370 KOG3414 Component of the U4/U6 94.9 0.26 5.6E-06 38.1 8.2 63 162-251 22-84 (142)
371 cd03027 GRX_DEP Glutaredoxin ( 94.8 0.077 1.7E-06 37.2 5.2 55 46-109 3-60 (73)
372 KOG4582 Uncharacterized conser 94.8 0.012 2.6E-07 53.0 1.1 32 315-346 152-185 (278)
373 TIGR02190 GlrX-dom Glutaredoxi 94.8 0.061 1.3E-06 38.4 4.7 56 45-109 9-66 (79)
374 cd03418 GRX_GRXb_1_3_like Glut 94.8 0.081 1.8E-06 37.1 5.3 55 46-109 2-60 (75)
375 PF00130 C1_1: Phorbol esters/ 94.6 0.022 4.8E-07 37.3 1.9 35 313-347 9-46 (53)
376 KOG0913 Thiol-disulfide isomer 94.6 0.016 3.5E-07 49.6 1.4 69 165-260 41-109 (248)
377 PHA03050 glutaredoxin; Provisi 94.3 0.27 5.9E-06 37.5 7.4 58 46-109 15-78 (108)
378 COG4545 Glutaredoxin-related p 94.0 0.13 2.8E-06 35.7 4.5 70 168-259 5-77 (85)
379 TIGR02194 GlrX_NrdH Glutaredox 94.0 0.13 2.9E-06 35.9 4.9 54 47-109 2-57 (72)
380 PRK10824 glutaredoxin-4; Provi 93.9 0.22 4.8E-06 38.4 6.3 46 52-106 28-73 (115)
381 PRK10329 glutaredoxin-like pro 93.9 0.17 3.6E-06 36.5 5.3 54 46-108 3-58 (81)
382 cd03029 GRX_hybridPRX5 Glutare 93.9 0.14 3E-06 35.7 4.9 55 46-109 3-59 (72)
383 cd03029 GRX_hybridPRX5 Glutare 93.9 0.1 2.2E-06 36.4 4.2 53 167-249 3-55 (72)
384 PRK10329 glutaredoxin-like pro 93.9 0.37 7.9E-06 34.7 7.1 54 167-250 3-56 (81)
385 cd03019 DsbA_DsbA DsbA family, 93.8 0.087 1.9E-06 43.8 4.2 42 41-85 14-55 (178)
386 COG4312 Uncharacterized protei 93.6 0.12 2.7E-06 43.8 4.7 93 145-242 53-153 (247)
387 PF00837 T4_deiodinase: Iodoth 93.6 0.07 1.5E-06 46.3 3.3 64 21-87 76-144 (237)
388 PRK10638 glutaredoxin 3; Provi 93.5 0.4 8.7E-06 34.5 6.8 60 167-258 4-63 (83)
389 COG2143 Thioredoxin-related pr 93.4 0.28 6.1E-06 39.5 6.1 76 38-116 38-134 (182)
390 TIGR00365 monothiol glutaredox 93.4 0.43 9.3E-06 35.6 6.9 58 164-250 12-73 (97)
391 KOG1672 ATP binding protein [P 93.3 0.2 4.2E-06 41.9 5.4 70 162-260 83-152 (211)
392 cd03028 GRX_PICOT_like Glutare 93.3 0.11 2.4E-06 38.2 3.6 59 163-250 7-69 (90)
393 KOG3414 Component of the U4/U6 93.1 0.45 9.8E-06 36.8 6.7 63 39-105 20-82 (142)
394 cd02991 UAS_ETEA UAS family, E 93.1 0.28 6.1E-06 38.0 5.8 66 35-106 10-82 (116)
395 cd02336 ZZ_RSC8 Zinc finger, Z 93.1 0.065 1.4E-06 33.7 1.8 30 316-345 1-31 (45)
396 TIGR02189 GlrX-like_plant Glut 93.0 0.24 5.2E-06 37.2 5.1 55 46-109 10-70 (99)
397 KOG0852 Alkyl hydroperoxide re 92.8 0.27 5.9E-06 40.3 5.4 60 28-89 18-79 (196)
398 PF02966 DIM1: Mitosis protein 92.8 0.62 1.3E-05 36.5 7.1 58 40-101 18-76 (133)
399 cd03031 GRX_GRX_like Glutaredo 92.6 2.4 5.2E-05 34.3 10.7 14 174-187 15-28 (147)
400 PF13743 Thioredoxin_5: Thiore 92.6 0.4 8.6E-06 40.1 6.5 35 169-207 2-36 (176)
401 PRK10638 glutaredoxin 3; Provi 92.6 0.28 6.1E-06 35.3 4.9 55 46-109 4-61 (83)
402 PF05768 DUF836: Glutaredoxin- 92.6 0.49 1.1E-05 33.9 6.0 56 167-252 2-57 (81)
403 TIGR03143 AhpF_homolog putativ 92.4 1.8 3.9E-05 43.2 12.0 70 159-256 362-431 (555)
404 cd00029 C1 Protein kinase C co 92.3 0.081 1.7E-06 33.9 1.5 34 314-347 10-46 (50)
405 PRK11509 hydrogenase-1 operon 91.6 0.17 3.8E-06 39.9 3.0 84 42-128 34-121 (132)
406 PF02966 DIM1: Mitosis protein 91.6 1.4 3.1E-05 34.5 7.9 62 162-251 19-80 (133)
407 TIGR00365 monothiol glutaredox 91.5 0.51 1.1E-05 35.2 5.2 49 52-109 25-76 (97)
408 KOG0541 Alkyl hydroperoxide re 91.5 0.52 1.1E-05 37.9 5.4 101 155-261 34-151 (171)
409 PF13911 AhpC-TSA_2: AhpC/TSA 90.6 0.81 1.8E-05 35.1 5.8 52 186-242 3-54 (115)
410 cd03028 GRX_PICOT_like Glutare 90.5 0.68 1.5E-05 33.9 5.1 60 41-109 6-72 (90)
411 cd02983 P5_C P5 family, C-term 90.4 2.7 5.9E-05 33.2 8.8 67 164-256 21-93 (130)
412 KOG1752 Glutaredoxin and relat 90.4 0.98 2.1E-05 34.1 5.9 63 167-258 16-78 (104)
413 COG0695 GrxC Glutaredoxin and 90.3 0.6 1.3E-05 33.4 4.5 20 167-186 3-22 (80)
414 KOG3507 DNA-directed RNA polym 90.0 0.12 2.6E-06 33.9 0.5 25 315-339 20-47 (62)
415 PF02114 Phosducin: Phosducin; 90.0 0.14 3E-06 45.8 1.1 70 41-116 145-216 (265)
416 PRK10954 periplasmic protein d 90.0 0.35 7.6E-06 41.6 3.7 35 40-74 35-72 (207)
417 COG0695 GrxC Glutaredoxin and 90.0 1.1 2.4E-05 32.1 5.7 55 46-109 3-62 (80)
418 PRK10954 periplasmic protein d 90.0 0.36 7.8E-06 41.5 3.7 41 162-206 36-79 (207)
419 cd02972 DsbA_family DsbA famil 89.9 0.49 1.1E-05 34.4 4.0 38 46-86 1-38 (98)
420 PF13778 DUF4174: Domain of un 89.8 3.7 8E-05 31.8 8.9 89 158-260 3-94 (118)
421 smart00109 C1 Protein kinase C 89.6 0.13 2.7E-06 32.7 0.4 35 313-347 9-45 (49)
422 cd03020 DsbA_DsbC_DsbG DsbA fa 89.4 0.89 1.9E-05 38.7 5.7 28 39-66 74-101 (197)
423 PF04592 SelP_N: Selenoprotein 88.4 0.94 2E-05 39.2 5.0 55 31-86 15-69 (238)
424 KOG1752 Glutaredoxin and relat 88.4 1.5 3.3E-05 33.1 5.6 55 46-109 16-76 (104)
425 COG1331 Highly conserved prote 88.2 0.84 1.8E-05 45.6 5.2 45 40-89 41-88 (667)
426 PF07449 HyaE: Hydrogenase-1 e 87.9 0.44 9.6E-06 36.2 2.4 27 233-260 71-97 (107)
427 PRK10824 glutaredoxin-4; Provi 87.6 0.81 1.7E-05 35.3 3.8 25 164-188 15-43 (115)
428 PRK10877 protein disulfide iso 87.1 1.5 3.2E-05 38.5 5.6 41 40-86 105-145 (232)
429 COG2077 Tpx Peroxiredoxin [Pos 86.7 2.6 5.7E-05 33.8 6.2 73 23-100 23-98 (158)
430 PRK12759 bifunctional gluaredo 86.3 1.4 3.1E-05 42.1 5.5 35 167-211 4-38 (410)
431 PRK15317 alkyl hydroperoxide r 86.1 1.8 3.8E-05 42.9 6.3 64 40-109 114-178 (517)
432 PF05768 DUF836: Glutaredoxin- 84.1 1.2 2.5E-05 32.0 3.0 56 46-108 2-57 (81)
433 KOG1672 ATP binding protein [P 83.4 0.54 1.2E-05 39.3 1.0 70 41-116 83-155 (211)
434 PHA03075 glutaredoxin-like pro 83.2 1.9 4E-05 32.9 3.8 30 164-193 2-31 (123)
435 KOG4236 Serine/threonine prote 83.0 0.19 4E-06 48.6 -2.0 44 303-346 143-190 (888)
436 KOG2603 Oligosaccharyltransfer 82.6 19 0.00041 32.7 10.4 79 159-258 56-141 (331)
437 KOG4301 Beta-dystrobrevin [Cyt 81.9 0.34 7.4E-06 43.8 -0.7 33 313-345 238-272 (434)
438 KOG2507 Ubiquitin regulatory p 81.4 13 0.00028 35.1 9.1 28 233-260 66-93 (506)
439 PRK11657 dsbG disulfide isomer 80.2 3.5 7.7E-05 36.6 5.2 29 41-69 116-144 (251)
440 PF11672 DUF3268: Protein of u 79.9 1.3 2.8E-05 33.2 1.9 17 326-342 28-46 (102)
441 PF06953 ArsD: Arsenical resis 79.4 15 0.00032 28.7 7.7 63 179-260 23-85 (123)
442 KOG3170 Conserved phosducin-li 78.4 8.1 0.00018 32.7 6.3 90 162-290 110-199 (240)
443 PRK12759 bifunctional gluaredo 78.2 4.2 9.1E-05 38.9 5.4 35 46-89 4-38 (410)
444 cd03073 PDI_b'_ERp72_ERp57 PDI 77.9 12 0.00025 28.6 6.8 52 178-255 33-88 (111)
445 cd02978 KaiB_like KaiB-like fa 77.8 14 0.00029 25.9 6.3 63 165-253 2-64 (72)
446 PRK11788 tetratricopeptide rep 76.6 3.6 7.9E-05 38.6 4.5 26 313-338 352-378 (389)
447 cd03067 PDI_b_PDIR_N PDIb fami 76.1 13 0.00028 27.8 6.1 79 44-126 21-107 (112)
448 PF01216 Calsequestrin: Calseq 75.4 11 0.00023 34.8 6.7 73 163-262 51-129 (383)
449 cd03060 GST_N_Omega_like GST_N 75.2 7.6 0.00017 26.6 4.8 60 169-260 3-62 (71)
450 PF05988 DUF899: Bacterial pro 75.2 13 0.00029 31.8 6.9 75 28-106 51-133 (211)
451 TIGR03140 AhpF alkyl hydropero 74.7 5.4 0.00012 39.5 5.2 64 40-109 115-179 (515)
452 KOG4286 Dystrophin-like protei 73.1 1.3 2.7E-05 44.5 0.3 28 317-344 605-634 (966)
453 cd03072 PDI_b'_ERp44 PDIb' fam 73.0 19 0.00041 27.4 6.8 51 178-255 29-84 (111)
454 PF13832 zf-HC5HC2H_2: PHD-zin 72.9 2.2 4.7E-05 32.5 1.6 34 314-348 54-89 (110)
455 PF10571 UPF0547: Uncharacteri 71.2 2.2 4.9E-05 23.3 0.9 23 317-339 2-24 (26)
456 PRK09301 circadian clock prote 71.0 21 0.00046 26.8 6.3 66 162-253 4-69 (103)
457 cd03031 GRX_GRX_like Glutaredo 70.9 21 0.00045 28.8 6.9 47 53-108 15-68 (147)
458 PF13909 zf-H2C2_5: C2H2-type 69.4 2.6 5.7E-05 22.2 1.0 10 330-339 1-10 (24)
459 PHA03075 glutaredoxin-like pro 67.9 8.7 0.00019 29.4 3.7 29 43-71 2-30 (123)
460 PF00628 PHD: PHD-finger; Int 67.7 3.8 8.1E-05 26.2 1.6 31 317-347 1-32 (51)
461 COG1651 DsbG Protein-disulfide 67.6 19 0.00041 31.5 6.7 46 28-73 69-115 (244)
462 cd03060 GST_N_Omega_like GST_N 67.3 17 0.00037 24.8 5.1 32 48-86 3-34 (71)
463 cd02983 P5_C P5 family, C-term 67.1 11 0.00025 29.6 4.6 71 58-131 40-115 (130)
464 COG1651 DsbG Protein-disulfide 67.0 16 0.00035 32.0 6.1 45 150-194 71-115 (244)
465 KOG3171 Conserved phosducin-li 66.7 12 0.00026 32.0 4.7 80 150-259 143-225 (273)
466 KOG2640 Thioredoxin [Function 66.6 0.78 1.7E-05 41.3 -2.4 74 164-264 77-150 (319)
467 TIGR02654 circ_KaiB circadian 66.6 32 0.0007 25.0 6.3 64 164-253 3-66 (87)
468 PF11009 DUF2847: Protein of u 65.3 34 0.00073 25.9 6.5 67 41-110 18-90 (105)
469 PRK12496 hypothetical protein; 65.1 4.7 0.0001 33.2 2.1 24 316-339 128-153 (164)
470 smart00659 RPOLCX RNA polymera 64.6 4.6 0.0001 25.2 1.5 25 315-339 2-29 (44)
471 PF13848 Thioredoxin_6: Thiore 64.1 5.5 0.00012 32.9 2.4 87 16-106 67-157 (184)
472 PF13743 Thioredoxin_5: Thiore 63.9 12 0.00027 31.1 4.5 36 48-86 2-37 (176)
473 PF07754 DUF1610: Domain of un 63.5 5.7 0.00012 21.3 1.5 20 318-337 1-24 (24)
474 KOG4236 Serine/threonine prote 63.2 1 2.2E-05 43.8 -2.4 43 305-347 267-313 (888)
475 cd02977 ArsC_family Arsenate R 63.0 12 0.00026 28.0 3.9 45 47-100 2-49 (105)
476 cd03036 ArsC_like Arsenate Red 62.7 5.8 0.00013 30.3 2.1 20 168-187 2-21 (111)
477 TIGR01617 arsC_related transcr 62.3 17 0.00037 27.9 4.7 44 47-99 2-48 (117)
478 smart00249 PHD PHD zinc finger 62.1 6.9 0.00015 23.9 2.1 30 317-346 1-31 (47)
479 KOG2996 Rho guanine nucleotide 61.6 7.3 0.00016 38.2 2.9 84 259-345 475-567 (865)
480 cd02977 ArsC_family Arsenate R 61.0 16 0.00035 27.3 4.3 20 168-187 2-21 (105)
481 COG2888 Predicted Zn-ribbon RN 60.3 5.2 0.00011 26.5 1.2 26 313-338 25-59 (61)
482 PLN03098 LPA1 LOW PSII ACCUMUL 59.3 1.1E+02 0.0023 29.7 10.2 107 151-261 284-428 (453)
483 PF03604 DNA_RNApol_7kD: DNA d 58.7 2.8 6E-05 24.2 -0.3 23 316-338 1-26 (32)
484 KOG4498 Uncharacterized conser 57.8 15 0.00033 30.8 3.7 55 28-84 34-91 (197)
485 PRK01655 spxA transcriptional 57.4 23 0.00049 27.9 4.7 45 46-99 2-49 (131)
486 PF04134 DUF393: Protein of un 57.3 28 0.0006 26.3 5.1 19 170-188 2-20 (114)
487 cd03035 ArsC_Yffb Arsenate Red 57.2 21 0.00045 26.9 4.3 20 168-187 2-21 (105)
488 cd03036 ArsC_like Arsenate Red 56.4 17 0.00036 27.7 3.7 45 47-100 2-49 (111)
489 KOG0696 Serine/threonine prote 55.8 5.3 0.00012 37.8 0.9 51 295-345 35-89 (683)
490 KOG4498 Uncharacterized conser 55.2 23 0.00049 29.7 4.4 56 149-207 35-92 (197)
491 COG4312 Uncharacterized protei 55.2 31 0.00067 29.7 5.2 73 30-106 59-139 (247)
492 PF01323 DSBA: DSBA-like thior 54.9 23 0.0005 29.4 4.7 40 231-289 154-193 (193)
493 PHA00626 hypothetical protein 54.9 8.8 0.00019 25.1 1.5 12 327-338 21-32 (59)
494 PF13696 zf-CCHC_2: Zinc knuck 54.3 5.5 0.00012 23.0 0.5 20 314-334 7-26 (32)
495 PF06053 DUF929: Domain of unk 54.1 16 0.00035 32.2 3.6 32 162-193 57-88 (249)
496 TIGR01617 arsC_related transcr 53.8 29 0.00062 26.6 4.7 33 168-210 2-34 (117)
497 cd03072 PDI_b'_ERp44 PDIb' fam 53.7 48 0.001 25.2 5.8 58 42-106 16-79 (111)
498 PRK14890 putative Zn-ribbon RN 53.4 9.2 0.0002 25.4 1.5 25 313-337 23-56 (59)
499 PRK01655 spxA transcriptional 52.9 30 0.00066 27.2 4.7 44 167-220 2-48 (131)
500 PF07191 zinc-ribbons_6: zinc- 52.9 17 0.00037 25.1 2.8 30 306-337 9-38 (70)
No 1
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.92 E-value=5.8e-25 Score=176.39 Aligned_cols=130 Identities=49% Similarity=1.013 Sum_probs=118.5
Q ss_pred CcEecCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCcee
Q 018726 146 DYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLA 225 (351)
Q Consensus 146 df~~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 225 (351)
||..+.+|+.+++++++||++||+||++||++|+.++|.|.++++++++ .+.+++|++|++|.+.+++.++++.++|..
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 79 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE-SGKNFEIVFISWDRDEESFNDYFSKMPWLA 79 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHcCCeeE
Confidence 4555889999999999999999999999999999999999999999975 234799999999999999999999999988
Q ss_pred eccCc-hhhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCC
Q 018726 226 IPYED-RARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPF 276 (351)
Q Consensus 226 ~~~~~-d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~ 276 (351)
+++.. +....+++.|++.++|+++|||++|+|+.++++.++..+|+.+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 80 VPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred cccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 88766 5567899999999999999999999999999999999999999996
No 2
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.91 E-value=1.3e-24 Score=174.79 Aligned_cols=119 Identities=28% Similarity=0.564 Sum_probs=103.8
Q ss_pred cceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcc----cCCceEEEEEeCCCCHHHHHhhhccCC--ceeec
Q 018726 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT----ANHCFEVVLVSTDRDHKEFDLNHSIMP--WLAIP 227 (351)
Q Consensus 154 ~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~----~~~~~~vv~v~~d~~~~~~~~~~~~~~--~~~~~ 227 (351)
..+++++++||+++|+|||+||++|++++|.|.++++++++. ...+++||+|+.|.+.+++.++++.++ |..+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 456788999999999999999999999999999999988752 124699999999998888999999887 77888
Q ss_pred cCchhhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCCc
Q 018726 228 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAK 272 (351)
Q Consensus 228 ~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~ 272 (351)
+..+....+++.|++.++|+++|||++|+|+.++++..+..+|..
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~ 140 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPA 140 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHH
Confidence 877666799999999999999999999999999987776666644
No 3
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.90 E-value=3.1e-23 Score=166.48 Aligned_cols=126 Identities=48% Similarity=0.944 Sum_probs=109.4
Q ss_pred ecCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccC-Cceeec
Q 018726 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM-PWLAIP 227 (351)
Q Consensus 149 ~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~-~~~~~~ 227 (351)
++.+ +++++++++||++||+||++||++|+.++|.|+++++++++ ...+++|++|++|.+.+++.++++.+ +|..++
T Consensus 4 ~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~-~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 4 LDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE-EGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred ccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh-cCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 3444 69999999999999999999999999999999999999975 12479999999999988999999988 688888
Q ss_pred cCc-hhhHHHHHHcCcCceeeEEEECCCCceEeccccceeec-cCCcCCCC
Q 018726 228 YED-RARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL-YGAKAFPF 276 (351)
Q Consensus 228 ~~~-d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~-~g~~~~p~ 276 (351)
+.. +....+.+.|++.++|+++|||++|+|+.+++...+.. +|+.+|||
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 765 34568889999999999999999999999998776665 88888886
No 4
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.86 E-value=2.1e-21 Score=158.69 Aligned_cols=117 Identities=28% Similarity=0.489 Sum_probs=102.8
Q ss_pred hhccCCCcEe-c--CCCcceeecccCCcEEEEEEecC-CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726 140 LAIEGRDYVL-S--RDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 215 (351)
Q Consensus 140 ~g~~~pdf~~-~--~~g~~~~l~~~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 215 (351)
+|+++|+|.+ + .+|+++++++++||+++|+||++ |||+|+.++|.+.++++.+++ .++.+++|+.+.+.. ..
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~---~~v~~v~v~~~~~~~-~~ 77 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD---KGVDVVGVSSDDDPP-VR 77 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT---TTCEEEEEEESSSHH-HH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc---CceEEEEecccCCHH-HH
Confidence 5889999998 5 99999999999999999999999 999999999999999999886 789999999998766 66
Q ss_pred hhhccCCceeeccCchhhHHHHHHcCcC---------ceeeEEEECCCCceEecc
Q 018726 216 LNHSIMPWLAIPYEDRARQDLCRIFNIK---------GIPALVLIGPDGKTISTN 261 (351)
Q Consensus 216 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~---------~~P~~~lid~~G~v~~~~ 261 (351)
++++..+ ..+++..|....+.+.|++. ++|+++|||++|+|++++
T Consensus 78 ~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 78 EFLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp HHHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred HHHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 6666644 56677777788999999988 999999999999999984
No 5
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.85 E-value=1.1e-20 Score=180.62 Aligned_cols=117 Identities=17% Similarity=0.254 Sum_probs=103.4
Q ss_pred hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-----CCHH
Q 018726 139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-----RDHK 212 (351)
Q Consensus 139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-----~~~~ 212 (351)
..+.++|+|++ +.+|+.+.++ +||+|||+|||+||++|+.++|.|++++++++. +++.||+|+++ .+..
T Consensus 33 ~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~---~~v~VI~Vs~~~~~~e~~~~ 107 (521)
T PRK14018 33 TVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKF---SSANLITVASPGFLHEKKDG 107 (521)
T ss_pred cccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEecccccccccHH
Confidence 34568999999 9999999988 799999999999999999999999999999875 67999999873 3446
Q ss_pred HHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726 213 EFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
++.++++.+++.++|+..|....+++.|+|.++|+++|||++|+|+.+
T Consensus 108 ~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~ 155 (521)
T PRK14018 108 DFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRI 155 (521)
T ss_pred HHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence 777777777777788888888899999999999999999999999988
No 6
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.84 E-value=1.4e-20 Score=149.32 Aligned_cols=116 Identities=30% Similarity=0.565 Sum_probs=104.1
Q ss_pred hhccCCCcEe-cCCCcceeecccCCcEEEEEEecC-CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhh
Q 018726 140 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 217 (351)
Q Consensus 140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 217 (351)
+|+++|+|++ +.+|+.+++++++||+++|.||++ ||++|+..++.|+++++++++ .++.+++|+.|. .++.+++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~---~~~~vi~is~d~-~~~~~~~ 76 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD---KGVQVIGISTDD-PEEIKQF 76 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT---TTEEEEEEESSS-HHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhcc---ceEEeeeccccc-ccchhhh
Confidence 5899999999 999999999999999999999999 999999999999999999986 799999999974 4466666
Q ss_pred hccCCceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEec
Q 018726 218 HSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 260 (351)
Q Consensus 218 ~~~~~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~ 260 (351)
.+..+ ..+|+..|....+.+.|++. .+|++||||++|+|+++
T Consensus 77 ~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 77 LEEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 66544 66777888889999999998 99999999999999874
No 7
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.83 E-value=1.6e-20 Score=159.33 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=96.2
Q ss_pred HHhhhccCCCcEe-cCC--Ccceeeccc-CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018726 137 EQLLAIEGRDYVL-SRD--HRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK 212 (351)
Q Consensus 137 ~~~~g~~~pdf~~-~~~--g~~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~ 212 (351)
...+|.++|+|++ +.+ |+.++++.+ +||+++|+||++||++|+.++|.|+++++ .+++|++|+.+++.+
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~-------~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA-------QGIRVVGMNYKDDRQ 110 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH-------cCCEEEEEECCCCHH
Confidence 3567899999999 777 466666665 79999999999999999999999987743 468899999988887
Q ss_pred HHHhhhccCCceeec-cCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726 213 EFDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 261 (351)
Q Consensus 213 ~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~ 261 (351)
+..++++.++. .+| ...|....+.+.|++.++|++|+||++|+|++++
T Consensus 111 ~~~~~~~~~~~-~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 111 KAISWLKELGN-PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred HHHHHHHHcCC-CCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 78888876652 333 3446667888999999999999999999999884
No 8
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.83 E-value=2.8e-20 Score=145.34 Aligned_cols=110 Identities=20% Similarity=0.350 Sum_probs=94.1
Q ss_pred CCcEe-cCCCcceeecccC-CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCC
Q 018726 145 RDYVL-SRDHRKITVSELA-GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 222 (351)
Q Consensus 145 pdf~~-~~~g~~~~l~~~~-gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 222 (351)
|+|.+ +.+|+.+++++++ ||+++|+||++||++|+.++|.++++++++. .++.++.++ +.+.++..++.+.++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~----~~~~vi~v~-~~~~~~~~~~~~~~~ 75 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA----DWLDVVLAS-DGEKAEHQRFLKKHG 75 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhc----CCcEEEEEe-CCCHHHHHHHHHHhC
Confidence 78888 8999999999997 9999999999999999999999999988875 468888775 667778888888777
Q ss_pred ceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726 223 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 261 (351)
Q Consensus 223 ~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~ 261 (351)
...+|...+ ..+.+.|++.++|++++||++|+|++++
T Consensus 76 ~~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 76 LEAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 545565443 4688999999999999999999999874
No 9
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.83 E-value=3.2e-20 Score=147.55 Aligned_cols=121 Identities=45% Similarity=0.849 Sum_probs=111.2
Q ss_pred cCCCcceeec-ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhcc--CCceee
Q 018726 150 SRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI--MPWLAI 226 (351)
Q Consensus 150 ~~~g~~~~l~-~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~--~~~~~~ 226 (351)
..+|..+..+ .++||+|+++|.|.||+||+.+.|.|.++|++.++ .+..++||+||.|++.+++..++.. .+|+.+
T Consensus 19 ~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~-~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~i 97 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKD-NAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAI 97 (157)
T ss_pred ccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHh-cCCceEEEEEecCCCHHHHHHHHHhcCCCeEEe
Confidence 6777777766 68999999999999999999999999999999986 4457999999999999999999984 669999
Q ss_pred ccCchhhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCC
Q 018726 227 PYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 271 (351)
Q Consensus 227 ~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~ 271 (351)
|+.++..+++.++|++.++|++++++++|+++.++|+..+...|.
T Consensus 98 Pf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 98 PFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred cCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 999999999999999999999999999999999999999888884
No 10
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.83 E-value=5.6e-20 Score=138.84 Aligned_cols=93 Identities=41% Similarity=0.833 Sum_probs=85.0
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccC--CceeeccCchhhHHHHHHc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM--PWLAIPYEDRARQDLCRIF 240 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~ 240 (351)
||+++|+||++||++|++++|.|.++++++++ +.+++||+|+.|.+.++++++++.. +|..+++..+....+.+.|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~--~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK--KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKY 78 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHC
Confidence 79999999999999999999999999999983 4899999999999999999999977 7999999998888999999
Q ss_pred CcCceeeEEEECCCCce
Q 018726 241 NIKGIPALVLIGPDGKT 257 (351)
Q Consensus 241 ~i~~~P~~~lid~~G~v 257 (351)
++.++|+++|+|++|+|
T Consensus 79 ~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 79 GINGIPTLVLLDPDGKI 95 (95)
T ss_dssp T-TSSSEEEEEETTSBE
T ss_pred CCCcCCEEEEECCCCCC
Confidence 99999999999999987
No 11
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.81 E-value=7.7e-20 Score=145.78 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=96.4
Q ss_pred cCCCcEe-cCCC--cceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhc
Q 018726 143 EGRDYVL-SRDH--RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 219 (351)
Q Consensus 143 ~~pdf~~-~~~g--~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 219 (351)
++|+|++ +.+| +.+++++++||+++|+||++||++|+.++|.|+++.+++ ++.|++|+.+.+.++++++++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~------~~~vv~v~~~~~~~~~~~~~~ 75 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG------RVPIYGINYKDNPENALAWLA 75 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc------CcEEEEEECCCCHHHHHHHHH
Confidence 5799999 8888 889999999999999999999999999999999987653 388999999888888888887
Q ss_pred cCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726 220 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 220 ~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
.......++..|....+++.|++.++|++++||++|+|+++
T Consensus 76 ~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 76 RHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred hcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEE
Confidence 66543223445667789999999999999999999999988
No 12
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.81 E-value=6.2e-20 Score=159.38 Aligned_cols=121 Identities=19% Similarity=0.263 Sum_probs=95.3
Q ss_pred HHhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------
Q 018726 137 EQLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD------- 208 (351)
Q Consensus 137 ~~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d------- 208 (351)
....|..+|+|++ +.+|+.+++++++||++||+||++||++|..++|.|++++++|++ .+++|++|+++
T Consensus 72 ~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~---~Gv~VIgV~~d~~~~~e~ 148 (236)
T PLN02399 72 RAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT---QGFEILAFPCNQFGGQEP 148 (236)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc---CCcEEEEEecccccccCC
Confidence 4457889999999 999999999999999999999999999999999999999999986 78999999975
Q ss_pred CCHHHHHhhh-ccCCceeeccCc--hhhH-HHHHHcC-------------cCceeeEEEECCCCceEecc
Q 018726 209 RDHKEFDLNH-SIMPWLAIPYED--RARQ-DLCRIFN-------------IKGIPALVLIGPDGKTISTN 261 (351)
Q Consensus 209 ~~~~~~~~~~-~~~~~~~~~~~~--d~~~-~~~~~~~-------------i~~~P~~~lid~~G~v~~~~ 261 (351)
.+.++..+++ +.++ ..+|+.. |.+. .+...|+ +...|++||||++|+|+++.
T Consensus 149 ~s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~ 217 (236)
T PLN02399 149 GSNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERY 217 (236)
T ss_pred CCHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEE
Confidence 2446677776 3333 4455542 2212 2322222 34579999999999999983
No 13
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.81 E-value=3.1e-19 Score=149.81 Aligned_cols=147 Identities=16% Similarity=0.294 Sum_probs=116.3
Q ss_pred hccCCCcEe-cCCCcceeeccc-CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018726 141 AIEGRDYVL-SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 211 (351)
Q Consensus 141 g~~~pdf~~-~~~g~~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 211 (351)
|..+|+|++ +.+|+.++++++ +||++||+||++||+.|..+++.|.+++++|++ .++.|++|++|. +.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~---~~v~~v~is~d~~~~~~~d~~ 77 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA---KGVAVVAINSNDIEAYPEDSP 77 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh---CCeEEEEEecCccccccccCH
Confidence 567899999 999999999998 899999999999999999999999999999986 789999999985 46
Q ss_pred HHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHHh
Q 018726 212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE 291 (351)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 291 (351)
+++.++.+.++. .+++..|....+.+.|++..+|+++|||++|+|+++.+..- .++. ........++.++|+..
T Consensus 78 ~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~--~~~~---~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 78 ENMKAKAKEHGY-PFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDD--SRPG---NDPPVTGRDLRAALDAL 151 (171)
T ss_pred HHHHHHHHHCCC-CceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccC--Cccc---ccccccHHHHHHHHHHH
Confidence 788888876663 47777787889999999999999999999999998743110 0110 01223345566666665
Q ss_pred cCcCC
Q 018726 292 GDALP 296 (351)
Q Consensus 292 ~~~~p 296 (351)
+.+-+
T Consensus 152 l~~~~ 156 (171)
T cd02969 152 LAGKP 156 (171)
T ss_pred HcCCC
Confidence 55443
No 14
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.81 E-value=2.9e-19 Score=150.28 Aligned_cols=119 Identities=24% Similarity=0.433 Sum_probs=107.5
Q ss_pred HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726 138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 216 (351)
Q Consensus 138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 216 (351)
..+|..+|+|++ +.+|+.+++++++||+++|+||++||++|+.+.+.|.++++++++ .++.+++|+.|.+.+++..
T Consensus 35 ~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~---~~~~vi~i~~d~~~~~~~~ 111 (173)
T PRK03147 35 VQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE---KGVEIIAVNVDETELAVKN 111 (173)
T ss_pred cCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc---CCeEEEEEEcCCCHHHHHH
Confidence 446889999999 999999999999999999999999999999999999999999986 6799999999988888888
Q ss_pred hhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726 217 NHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 217 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
+.+.++ ..+++..|....+.+.|++.++|+++++|++|+++..
T Consensus 112 ~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 112 FVNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HHHHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 888766 4566666777899999999999999999999999976
No 15
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.81 E-value=1.2e-19 Score=144.38 Aligned_cols=105 Identities=21% Similarity=0.297 Sum_probs=93.6
Q ss_pred CcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-----CCHHHHHhhhccCCceeec
Q 018726 153 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-----RDHKEFDLNHSIMPWLAIP 227 (351)
Q Consensus 153 g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~~~~~~~~ 227 (351)
++++++++++||++||+||++||++|+.++|.|+++++++++ .++.|++|+.+ .+.++++++++.++ +.+|
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~---~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p 88 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD---DGLVVIGVHSPEFAFERDLANVKSAVLRYG-ITYP 88 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc---CCeEEEEeccCccccccCHHHHHHHHHHcC-CCCC
Confidence 578999999999999999999999999999999999999986 78999999863 45677888887766 4678
Q ss_pred cCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726 228 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 261 (351)
Q Consensus 228 ~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~ 261 (351)
+..|....+.+.|++.++|+++|||++|+|++++
T Consensus 89 ~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 89 VANDNDYATWRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred EEECCchHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence 8888888999999999999999999999999884
No 16
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.81 E-value=1.8e-19 Score=154.15 Aligned_cols=120 Identities=13% Similarity=0.168 Sum_probs=93.1
Q ss_pred HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------C
Q 018726 138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------R 209 (351)
Q Consensus 138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~ 209 (351)
...+..+|+|++ +.+|+.+++++++||++||+|||+||++|+.++|.|++++++|++ .+++|++|+++ .
T Consensus 13 ~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~---~g~~vvgv~~~~~~~~e~d 89 (199)
T PTZ00056 13 DELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP---LGLEILAFPTSQFLNQEFP 89 (199)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc---CceEEEEecchhccCCCCC
Confidence 345678999999 999999999999999999999999999999999999999999986 78999999974 3
Q ss_pred CHHHHHhhhccCCceeeccCch------hhHH--------HHHHcCcC----ce---eeEEEECCCCceEecc
Q 018726 210 DHKEFDLNHSIMPWLAIPYEDR------ARQD--------LCRIFNIK----GI---PALVLIGPDGKTISTN 261 (351)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~d------~~~~--------~~~~~~i~----~~---P~~~lid~~G~v~~~~ 261 (351)
+.++++++++..+ +.+|+..+ .... +...|+.. ++ |++||||++|+|+.+.
T Consensus 90 ~~e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~ 161 (199)
T PTZ00056 90 NTKDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF 161 (199)
T ss_pred CHHHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence 4567888877655 34454321 1111 22234332 22 4799999999999874
No 17
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.80 E-value=9e-20 Score=153.16 Aligned_cols=116 Identities=19% Similarity=0.234 Sum_probs=95.7
Q ss_pred HhhhccCCCcEe-cCCCc--ceeeccc-CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018726 138 QLLAIEGRDYVL-SRDHR--KITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 213 (351)
Q Consensus 138 ~~~g~~~pdf~~-~~~g~--~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~ 213 (351)
..+|.++|+|++ +.+|+ .++++++ +||+++|+||++||++|+.++|.++++++ .+++|++|+.+...++
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~-------~~~~vi~V~~~~~~~~ 106 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK-------DGLPIVGVDYKDQSQN 106 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH-------cCCEEEEEECCCChHH
Confidence 467999999999 88886 4555565 78999999999999999999999887753 4588999999877777
Q ss_pred HHhhhccCCceeec-cCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726 214 FDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 261 (351)
Q Consensus 214 ~~~~~~~~~~~~~~-~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~ 261 (351)
..++++.++. .++ +..|....+.+.|++.++|++++||++|+|++++
T Consensus 107 ~~~~~~~~~~-~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 154 (173)
T TIGR00385 107 ALKFLKELGN-PYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRH 154 (173)
T ss_pred HHHHHHHcCC-CCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEE
Confidence 7777776653 343 3456678899999999999999999999999883
No 18
>PLN02412 probable glutathione peroxidase
Probab=99.80 E-value=1.1e-19 Score=151.56 Aligned_cols=116 Identities=16% Similarity=0.257 Sum_probs=91.1
Q ss_pred ccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHH
Q 018726 142 IEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKE 213 (351)
Q Consensus 142 ~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~ 213 (351)
..+|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|++ .++.|++|++|. +.++
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~---~g~~vvgv~~~~~~~~~~~~~~~ 83 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE---QGFEILAFPCNQFLGQEPGSNEE 83 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh---CCcEEEEecccccccCCCCCHHH
Confidence 56899999 999999999999999999999999999999999999999999986 789999999863 3445
Q ss_pred HHhhh-ccCCceeeccCc--hhh-HHHHHHcC-------------cCceeeEEEECCCCceEecc
Q 018726 214 FDLNH-SIMPWLAIPYED--RAR-QDLCRIFN-------------IKGIPALVLIGPDGKTISTN 261 (351)
Q Consensus 214 ~~~~~-~~~~~~~~~~~~--d~~-~~~~~~~~-------------i~~~P~~~lid~~G~v~~~~ 261 (351)
..+++ +.++ +.+|... |.. ....+.|+ +.+.|++||||++|+|+.+.
T Consensus 84 ~~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 84 IQQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred HHHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence 55554 4433 4455543 122 13333332 56689999999999999983
No 19
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.80 E-value=3.7e-19 Score=144.88 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=99.0
Q ss_pred hhccCCCcEe-cCCCcceeecccCCcEEEEEEecCC-ChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhh
Q 018726 140 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 217 (351)
Q Consensus 140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~-C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 217 (351)
+|.++|+|++ +.+|+.+++++++||++||+||++| |++|+.+++.|+++++++ .++.|++|++|. .....++
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-----~~~~vi~Is~d~-~~~~~~~ 75 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-----DNTVVLTISADL-PFAQKRW 75 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-----CCCEEEEEECCC-HHHHHHH
Confidence 5889999999 9999999999999999999999999 689999999999999986 358999999986 4455666
Q ss_pred hccCCceeeccCchhh-HHHHHHcCcCc------eeeEEEECCCCceEecc
Q 018726 218 HSIMPWLAIPYEDRAR-QDLCRIFNIKG------IPALVLIGPDGKTISTN 261 (351)
Q Consensus 218 ~~~~~~~~~~~~~d~~-~~~~~~~~i~~------~P~~~lid~~G~v~~~~ 261 (351)
.+.++...++...|.. ..+.+.||+.. .|++||||++|+|++.+
T Consensus 76 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 76 CGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred HHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence 6666544677777765 89999999863 79999999999999884
No 20
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.80 E-value=4.1e-19 Score=148.13 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=100.6
Q ss_pred HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCC-ChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726 138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 215 (351)
Q Consensus 138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~-C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 215 (351)
..+|.++|+|++ +.+|+.+++++++||++||+||++| |++|..+++.|+++++++ .+++|++|+.|. .....
T Consensus 18 ~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-----~~~~vv~vs~D~-~~~~~ 91 (167)
T PRK00522 18 PQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-----DNTVVLCISADL-PFAQK 91 (167)
T ss_pred CCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-----CCcEEEEEeCCC-HHHHH
Confidence 346999999999 8999999999999999999999999 999999999999998887 368999999985 34556
Q ss_pred hhhccCCceeeccCch-hhHHHHHHcCcCcee---------eEEEECCCCceEecc
Q 018726 216 LNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIP---------ALVLIGPDGKTISTN 261 (351)
Q Consensus 216 ~~~~~~~~~~~~~~~d-~~~~~~~~~~i~~~P---------~~~lid~~G~v~~~~ 261 (351)
++.+..+...+++..| ....+++.||+...| +++|||++|+|++.+
T Consensus 92 ~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~ 147 (167)
T PRK00522 92 RFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE 147 (167)
T ss_pred HHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence 6776666444677777 456999999998777 999999999999884
No 21
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.80 E-value=7.6e-19 Score=149.44 Aligned_cols=132 Identities=18% Similarity=0.194 Sum_probs=102.2
Q ss_pred hhhccCCCcEe-cCCCcceeec--ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726 139 LLAIEGRDYVL-SRDHRKITVS--ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 215 (351)
Q Consensus 139 ~~g~~~pdf~~-~~~g~~~~l~--~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 215 (351)
.+|.++|+|++ +.+|+.++++ +++||+++|+||++||++|+.++|.+.++++++ ++.+++|+.| +.++..
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------~~~vv~Is~~-~~~~~~ 119 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------ETDVVMISDG-TPAEHR 119 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc------CCcEEEEeCC-CHHHHH
Confidence 57899999999 9999999994 579999999999999999999999999987643 3568888854 566777
Q ss_pred hhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHHh
Q 018726 216 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE 291 (351)
Q Consensus 216 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 291 (351)
++.+.++....++. ...++.+.|++.++|++++||++|+|++++. ....+.++++.++++..
T Consensus 120 ~~~~~~~~~~~~~~--~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~------------~~~~~~le~ll~~l~~~ 181 (189)
T TIGR02661 120 RFLKDHELGGERYV--VSAEIGMAFQVGKIPYGVLLDQDGKIRAKGL------------TNTREHLESLLEADREG 181 (189)
T ss_pred HHHHhcCCCcceee--chhHHHHhccCCccceEEEECCCCeEEEccC------------CCCHHHHHHHHHHHHcC
Confidence 77776553211222 2468889999999999999999999998631 12445677776665543
No 22
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.79 E-value=1.2e-18 Score=146.31 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=99.1
Q ss_pred hhccCCCcEe-cCCC----cceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018726 140 LAIEGRDYVL-SRDH----RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 211 (351)
Q Consensus 140 ~g~~~pdf~~-~~~g----~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 211 (351)
+|+++|+|++ +.+| +.+++++++||++||+|| ++||++|..+++.|++++++|.+ .++.|++|++|...
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~---~~v~vv~Is~d~~~~~ 77 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK---LNAEVLGVSTDSHFSH 77 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEecCCHHHH
Confidence 4889999999 7776 789999999999999999 89999999999999999999986 78999999998643
Q ss_pred HHHHhhhcc---CCceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726 212 KEFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 261 (351)
Q Consensus 212 ~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~ 261 (351)
..+.+.... ..-..+++..|....+++.||+. .+|+++|||++|+|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 78 LAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred HHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 234333321 11245777778889999999986 688999999999999984
No 23
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.79 E-value=1.6e-19 Score=148.40 Aligned_cols=113 Identities=15% Similarity=0.230 Sum_probs=90.9
Q ss_pred CCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHHHH
Q 018726 144 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFD 215 (351)
Q Consensus 144 ~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~ 215 (351)
.|+|++ +.+|+.+++++++||++||+||++||+ |+.++|.|++++++|++ .++.|++|+++. +.++.+
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~---~~~~vv~v~~~~~~~~~~~~~~~~~ 77 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD---RGLVVLGFPCNQFGGQEPGSNEEIK 77 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC---CCEEEEEeccCccccCCCCCHHHHH
Confidence 589999 999999999999999999999999999 99999999999999986 789999999753 346777
Q ss_pred hhhcc-CCceeeccCchh--hHH-HHHHcC--cCcee-----------eEEEECCCCceEecc
Q 018726 216 LNHSI-MPWLAIPYEDRA--RQD-LCRIFN--IKGIP-----------ALVLIGPDGKTISTN 261 (351)
Q Consensus 216 ~~~~~-~~~~~~~~~~d~--~~~-~~~~~~--i~~~P-----------~~~lid~~G~v~~~~ 261 (351)
++++. .+ +.+|+..|. ... ..+.|+ +.++| ++||||++|+|+++.
T Consensus 78 ~f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~ 139 (152)
T cd00340 78 EFCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRF 139 (152)
T ss_pred HHHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEE
Confidence 88765 44 456665431 222 344555 35566 899999999999983
No 24
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.79 E-value=5.9e-19 Score=145.51 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=101.1
Q ss_pred hhccCCCcEe-cCCCcceeecccCCcEEEEEEecC-CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhh
Q 018726 140 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 217 (351)
Q Consensus 140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 217 (351)
+|..+|+|++ +.+|+.+++++++||++||+||++ ||+.|..+++.|.++++++++ .+++||+|+.| +.+++.++
T Consensus 6 ~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~---~~v~vi~Is~d-~~~~~~~~ 81 (154)
T PRK09437 6 AGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK---AGVVVLGISTD-KPEKLSRF 81 (154)
T ss_pred CCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCC-CHHHHHHH
Confidence 5889999999 999999999999999999999987 677799999999999999986 78999999998 45777777
Q ss_pred hccCCceeeccCchhhHHHHHHcCcCce------------eeEEEECCCCceEec
Q 018726 218 HSIMPWLAIPYEDRARQDLCRIFNIKGI------------PALVLIGPDGKTIST 260 (351)
Q Consensus 218 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~------------P~~~lid~~G~v~~~ 260 (351)
.+.++ ..+|+..|....+.+.||+... |+++|||++|+|++.
T Consensus 82 ~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 82 AEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred HHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 77665 4566777777889999998654 788999999999988
No 25
>PTZ00102 disulphide isomerase; Provisional
Probab=99.78 E-value=2.4e-18 Score=167.59 Aligned_cols=72 Identities=18% Similarity=0.348 Sum_probs=59.7
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
.||.++|+|||+||++|+.+.|.++++++.+++ ...+.+..++.+.. ...++.|+
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~v~~~~id~~~~-----------------------~~~~~~~~ 428 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD--NDSIIVAKMNGTAN-----------------------ETPLEEFS 428 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCcEEEEEEECCCC-----------------------ccchhcCC
Confidence 478999999999999999999999999998873 24577777777653 45678899
Q ss_pred cCceeeEEEECCCCceE
Q 018726 242 IKGIPALVLIGPDGKTI 258 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~ 258 (351)
+.++||+++++++|++.
T Consensus 429 v~~~Pt~~~~~~~~~~~ 445 (477)
T PTZ00102 429 WSAFPTILFVKAGERTP 445 (477)
T ss_pred CcccCeEEEEECCCcce
Confidence 99999999997766653
No 26
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.78 E-value=1.6e-18 Score=142.00 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=99.8
Q ss_pred hhccCCCcEe-cCCCcceeecccCC-cEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726 140 LAIEGRDYVL-SRDHRKITVSELAG-KTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 216 (351)
Q Consensus 140 ~g~~~pdf~~-~~~g~~~~l~~~~g-k~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 216 (351)
+|.++|+|.+ +.+|+.+++++++| |+++|.|| ++||+.|...+|.|+++++++++ .++.+++|+.|. .+..++
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~v~vi~vs~d~-~~~~~~ 78 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA---AGAEVLGISVDS-PFSLRA 78 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh---CCCEEEEecCCC-HHHHHH
Confidence 5889999999 89999999999999 99888887 99999999999999999999986 789999999885 455666
Q ss_pred hhccCCceeeccCchhh--HHHHHHcCcCc------eeeEEEECCCCceEecc
Q 018726 217 NHSIMPWLAIPYEDRAR--QDLCRIFNIKG------IPALVLIGPDGKTISTN 261 (351)
Q Consensus 217 ~~~~~~~~~~~~~~d~~--~~~~~~~~i~~------~P~~~lid~~G~v~~~~ 261 (351)
+.+.++ ..+|+..|.. ..+++.|++.. .|+++|||++|+|++++
T Consensus 79 ~~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~ 130 (149)
T cd03018 79 WAEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAW 130 (149)
T ss_pred HHHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEE
Confidence 666655 4567767755 88999999873 34899999999999984
No 27
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.78 E-value=2.2e-18 Score=146.36 Aligned_cols=120 Identities=23% Similarity=0.303 Sum_probs=98.5
Q ss_pred hhhccCCCcEe-c-CCCc--ceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018726 139 LLAIEGRDYVL-S-RDHR--KITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 211 (351)
Q Consensus 139 ~~g~~~pdf~~-~-~~g~--~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 211 (351)
.+|+++|+|++ + .+|+ .+++++++||++||+|| ++||++|..+++.|++++++|.+ .+++|++|+.|...
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~---~gv~vi~VS~D~~~~~ 79 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKK---LGVEVYSVSTDTHFVH 79 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHH
Confidence 57899999999 6 4665 67888999999999999 99999999999999999999986 78999999999642
Q ss_pred HHHHhhhccCCceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726 212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 261 (351)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~ 261 (351)
.+|........-+.+|+..|....+++.||+. ..|++||||++|+|++..
T Consensus 80 ~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 80 KAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred HHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 23333322222245677788888999999986 479999999999999883
No 28
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.77 E-value=1.6e-18 Score=140.51 Aligned_cols=114 Identities=25% Similarity=0.405 Sum_probs=101.2
Q ss_pred cCCCcEe-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhcc
Q 018726 143 EGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI 220 (351)
Q Consensus 143 ~~pdf~~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 220 (351)
++|+|.+ +.+|+.+++++++||+++|+|| ++||+.|..+++.|.++++++++ .+++|++|++|. .+.+.++.+.
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vv~is~d~-~~~~~~~~~~ 77 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA---LGAVVIGVSPDS-VESHAKFAEK 77 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHHHHHH
Confidence 5799999 9999999999999999999999 58999999999999999999986 789999999984 5677777776
Q ss_pred CCceeeccCchhhHHHHHHcCcCce---------eeEEEECCCCceEecc
Q 018726 221 MPWLAIPYEDRARQDLCRIFNIKGI---------PALVLIGPDGKTISTN 261 (351)
Q Consensus 221 ~~~~~~~~~~d~~~~~~~~~~i~~~---------P~~~lid~~G~v~~~~ 261 (351)
++ ..+|+..|....+.+.||+... |++++||++|+|+++.
T Consensus 78 ~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~ 126 (140)
T cd03017 78 YG-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVW 126 (140)
T ss_pred hC-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEE
Confidence 66 4577777878899999999988 9999999999999883
No 29
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.76 E-value=2e-18 Score=146.21 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=88.8
Q ss_pred hccCCCcEe-cCCCcceeecccCCcEE-EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018726 141 AIEGRDYVL-SRDHRKITVSELAGKTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 211 (351)
Q Consensus 141 g~~~pdf~~-~~~g~~~~l~~~~gk~v-ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 211 (351)
+..+|+|++ +.+|+.+++++++||++ |+.|||+||++|+.++|.|++++++|++ .++.|++|++|. +.
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~---~gv~vv~vs~~~~~~~~~~~~ 93 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS---QGLEILAFPCNQFMEQEPWDE 93 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh---CCcEEEEEecccccccCCCCH
Confidence 456899999 99999999999999965 5566999999999999999999999986 789999999752 33
Q ss_pred HHHHhhhc-cCCceeeccCch--hhH----HHH------------HHcCcCceee---EEEECCCCceEecc
Q 018726 212 KEFDLNHS-IMPWLAIPYEDR--ARQ----DLC------------RIFNIKGIPA---LVLIGPDGKTISTN 261 (351)
Q Consensus 212 ~~~~~~~~-~~~~~~~~~~~d--~~~----~~~------------~~~~i~~~P~---~~lid~~G~v~~~~ 261 (351)
++..+++. .++ +.+|+..| .+. .+. ..+++.++|+ +||||++|+|+++.
T Consensus 94 ~~~~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~ 164 (183)
T PTZ00256 94 PEIKEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF 164 (183)
T ss_pred HHHHHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence 56666654 333 34555422 111 122 1235678995 69999999999984
No 30
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.76 E-value=3.7e-18 Score=148.39 Aligned_cols=173 Identities=13% Similarity=0.121 Sum_probs=114.2
Q ss_pred CCCCeEEEEEeC---CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHH-H
Q 018726 40 CGGKTICLFFSA---NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLH-K 112 (351)
Q Consensus 40 ~~gk~v~v~F~a---~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~-~ 112 (351)
.++...++.|++ +||++|+.+.|.++++++++. . +++.++++|.++. ...+.+++..+|++.+ +|+.. .
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-~---~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~ 92 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-K---LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGI 92 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-C---ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEE
Confidence 344445666877 999999999999999999873 2 5788888886543 5777778888888887 55554 2
Q ss_pred HHhhhhhhhHHhhhccccccccchHHhhhccCCCcEecCCCc-ceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHH
Q 018726 113 KLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHR-KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE 191 (351)
Q Consensus 113 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~-~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~ 191 (351)
++.|.....++..++.....- ..+.- .++.. .-.+.++.+.++++.||++||++|+...+.++++..+
T Consensus 93 ~~~G~~~~~~l~~~i~~~~~~---------~~~~~--~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~ 161 (215)
T TIGR02187 93 RYTGIPAGYEFAALIEDIVRV---------SQGEP--GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALA 161 (215)
T ss_pred EEeecCCHHHHHHHHHHHHHh---------cCCCC--CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 555543334444433322100 00000 11111 1112233445666779999999999999988887766
Q ss_pred hhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCc
Q 018726 192 LKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 256 (351)
Q Consensus 192 ~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~ 256 (351)
. +++.+..|+.+.. .+++++|+|.++||+++. .+|+
T Consensus 162 ~-----~~i~~~~vD~~~~-----------------------~~~~~~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 162 N-----DKILGEMIEANEN-----------------------PDLAEKYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred c-----CceEEEEEeCCCC-----------------------HHHHHHhCCccCCEEEEe-cCCE
Confidence 3 4566666666653 688999999999999987 5565
No 31
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.9e-18 Score=160.93 Aligned_cols=80 Identities=16% Similarity=0.352 Sum_probs=60.3
Q ss_pred ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHH
Q 018726 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLH 111 (351)
Q Consensus 35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~ 111 (351)
+...-....+++|.||||||+||++++|.+++.++.++..+.. +....+|++++ ..+..+.+.++||+.+ +|...
T Consensus 35 f~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~--i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~ 112 (493)
T KOG0190|consen 35 FKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSP--VKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSA 112 (493)
T ss_pred HHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCC--ceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcc
Confidence 4444457789999999999999999999999999999998744 66677777655 3666677667777765 66653
Q ss_pred HHHhh
Q 018726 112 KKLRI 116 (351)
Q Consensus 112 ~~l~~ 116 (351)
..+.|
T Consensus 113 ~~Y~G 117 (493)
T KOG0190|consen 113 QDYNG 117 (493)
T ss_pred eeccC
Confidence 34433
No 32
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.75 E-value=1.1e-17 Score=143.57 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=99.1
Q ss_pred hhhccCCCcEe-cCCCcceeecccCCcEEEE-EEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HHH
Q 018726 139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGL-YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEF 214 (351)
Q Consensus 139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll-~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~ 214 (351)
.+|+.+|+|++ +..| .+++++++||+++| +||++||+.|..+++.|.+++++|++ .+++|++|++|... .+|
T Consensus 3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~---~~~~vi~vS~D~~~~~~~w 78 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK---LGVELVGLSVDSIYSHIAW 78 (202)
T ss_pred CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHH
Confidence 36899999999 6666 79999999997766 68999999999999999999999987 78999999999643 344
Q ss_pred Hhhh-ccCC-ceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726 215 DLNH-SIMP-WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 261 (351)
Q Consensus 215 ~~~~-~~~~-~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~ 261 (351)
.+.+ +..+ ...+|+..|.+..+++.||+. .+|++||||++|+|++..
T Consensus 79 ~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~ 133 (202)
T PRK13190 79 LRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMI 133 (202)
T ss_pred HHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEE
Confidence 4332 2333 256888889899999999984 589999999999999773
No 33
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.75 E-value=1.3e-17 Score=140.80 Aligned_cols=120 Identities=18% Similarity=0.292 Sum_probs=98.3
Q ss_pred hhhccCCCcEe-c---CCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018726 139 LLAIEGRDYVL-S---RDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 211 (351)
Q Consensus 139 ~~g~~~pdf~~-~---~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 211 (351)
.+|.++|+|+. . .+...+++++++||++||+|| +.||+.|..+++.|.+++++|.+ .+++|++||.|...
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~---~g~~vigIS~D~~~~~ 79 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK---LGVDVYSVSTDTHFTH 79 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEeCCCHHHH
Confidence 57999999998 3 344566788999999999999 99999999999999999999986 88999999998642
Q ss_pred HHHHhhhccCCceeeccCchhhHHHHHHcCc----Cce--eeEEEECCCCceEecc
Q 018726 212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNI----KGI--PALVLIGPDGKTISTN 261 (351)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i----~~~--P~~~lid~~G~v~~~~ 261 (351)
.+|.+......-+.+|+..|++..+++.||+ .++ |++||||++|+|++..
T Consensus 80 ~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~ 135 (187)
T PRK10382 80 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE 135 (187)
T ss_pred HHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEE
Confidence 3343333222235678888889999999998 355 9999999999999884
No 34
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.74 E-value=1e-17 Score=137.86 Aligned_cols=112 Identities=18% Similarity=0.230 Sum_probs=87.1
Q ss_pred CcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------CCHHHHHhh
Q 018726 146 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHKEFDLN 217 (351)
Q Consensus 146 df~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~ 217 (351)
+|++ +.+|+++++++++||++||+||++||++|+.++|.|++++++|++ .++.|++|+++ .+.+...++
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~---~~~~v~~i~~~~~~~~~~d~~~~~~~f 80 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP---SHFNVLAFPCNQFGESEPDSSKEIESF 80 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh---CCeEEEEEeccccccCCCCCHHHHHHH
Confidence 6788 899999999999999999999999999999999999999999986 78999999952 345667777
Q ss_pred hcc-CCceeeccCch-----hhHHHHHHcCc---Cceee----EEEECCCCceEecc
Q 018726 218 HSI-MPWLAIPYEDR-----ARQDLCRIFNI---KGIPA----LVLIGPDGKTISTN 261 (351)
Q Consensus 218 ~~~-~~~~~~~~~~d-----~~~~~~~~~~i---~~~P~----~~lid~~G~v~~~~ 261 (351)
.+. ++ +.+|...+ ........|.+ .++|+ +||||++|+|+.+.
T Consensus 81 ~~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~ 136 (153)
T TIGR02540 81 ARRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFW 136 (153)
T ss_pred HHHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEE
Confidence 753 34 44555432 11222223332 35898 99999999999883
No 35
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.74 E-value=1.3e-17 Score=129.67 Aligned_cols=111 Identities=29% Similarity=0.528 Sum_probs=99.8
Q ss_pred CcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC-HHHHHhhhccCCc
Q 018726 146 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLNHSIMPW 223 (351)
Q Consensus 146 df~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~ 223 (351)
+|.+ +.+|+.+++++++||+++|+||++||++|+..++.+.++.+++.+ +++.+++|++|.. .+.++.+.+.++
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~~v~~d~~~~~~~~~~~~~~~- 76 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKD---DGVEVVGVNVDDDDPAAVKAFLKKYG- 76 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCC---CCeEEEEEECCCCCHHHHHHHHHHcC-
Confidence 4666 889999999999999999999999999999999999999999875 7899999999987 889999998877
Q ss_pred eeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726 224 LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 224 ~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
..+++..+....+.+.|++.++|+++|+|++|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 77 ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred CCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 5666666667899999999999999999999999876
No 36
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.74 E-value=2.1e-17 Score=142.74 Aligned_cols=119 Identities=15% Similarity=0.122 Sum_probs=102.0
Q ss_pred hhhccCCCcEe-cCCCcceeecccCCcEE-EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC--HHHH
Q 018726 139 LLAIEGRDYVL-SRDHRKITVSELAGKTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--HKEF 214 (351)
Q Consensus 139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~v-ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~--~~~~ 214 (351)
++|+++|+|++ +.+|+...+++++||++ |++||++|||.|..+++.|++++++|.+ .+++|++||+|.. ..+|
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~---~gv~vigIS~D~~~~~~~w 79 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKE---LNTELIGLSVDQVFSHIKW 79 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHH
Confidence 68999999999 88898877789999975 6799999999999999999999999987 8899999999974 3456
Q ss_pred HhhhccC--CceeeccCchhhHHHHHHcCcC-------ceeeEEEECCCCceEec
Q 018726 215 DLNHSIM--PWLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTIST 260 (351)
Q Consensus 215 ~~~~~~~--~~~~~~~~~d~~~~~~~~~~i~-------~~P~~~lid~~G~v~~~ 260 (351)
.++++.. .-..+|+..|.+..+++.||+. ..|++||||++|+|++.
T Consensus 80 ~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 80 VEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred HHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 6666532 1256888888888999999983 68999999999999987
No 37
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.7e-17 Score=130.93 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=102.9
Q ss_pred hhhccCCCcEe-cCCCcceeecccCCcEEEEEEec-CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726 139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 216 (351)
Q Consensus 139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 216 (351)
.+|+++|||++ +.+|+.++|++++||+|||+||. .++|-|..++-.+...+.+|.+ .+.+|++||.|. ....++
T Consensus 5 ~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~---~~a~V~GIS~Ds-~~~~~~ 80 (157)
T COG1225 5 KVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK---LGAVVLGISPDS-PKSHKK 80 (157)
T ss_pred CCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh---CCCEEEEEeCCC-HHHHHH
Confidence 46899999999 99999999999999999999986 5777899999999999999987 899999999994 556666
Q ss_pred hhccCCceeeccCchhhHHHHHHcCcC------------ceeeEEEECCCCceEec
Q 018726 217 NHSIMPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST 260 (351)
Q Consensus 217 ~~~~~~~~~~~~~~d~~~~~~~~~~i~------------~~P~~~lid~~G~v~~~ 260 (351)
|.+.++ ++++...|.+..+++.||+. ..+++||||++|+|++.
T Consensus 81 F~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~ 135 (157)
T COG1225 81 FAEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYV 135 (157)
T ss_pred HHHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEE
Confidence 666666 56899999999999999973 35789999999999987
No 38
>PRK15000 peroxidase; Provisional
Probab=99.73 E-value=3.8e-17 Score=139.79 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=96.8
Q ss_pred hhhccCCCcEe-cCC--Ccc---eeeccc-CCcEEEEEEecC-CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018726 139 LLAIEGRDYVL-SRD--HRK---ITVSEL-AGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD 210 (351)
Q Consensus 139 ~~g~~~pdf~~-~~~--g~~---~~l~~~-~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~ 210 (351)
++|.++|+|++ +.. |+. ++++++ +||++||+||+. ||+.|..+++.|++++++|++ .+++|++||+|..
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~---~g~~vigvS~D~~ 79 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK---RGVEVVGVSFDSE 79 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCCH
Confidence 47899999999 543 443 445555 799999999995 999999999999999999987 7899999999964
Q ss_pred H--HHHHhhh-ccCC--ceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726 211 H--KEFDLNH-SIMP--WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 261 (351)
Q Consensus 211 ~--~~~~~~~-~~~~--~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~ 261 (351)
. ..|.+.. +..+ -+.+|+..|....+++.||+. ++|++||||++|+|++..
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~ 141 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQV 141 (200)
T ss_pred HHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEE
Confidence 3 3444332 2222 257888888889999999997 799999999999999873
No 39
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.72 E-value=3.5e-17 Score=132.55 Aligned_cols=115 Identities=21% Similarity=0.308 Sum_probs=99.3
Q ss_pred cCCCcEe-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhcc
Q 018726 143 EGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI 220 (351)
Q Consensus 143 ~~pdf~~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 220 (351)
.+|+|++ +.+|+++++++++||+++|+|| ++||+.|..+++.|.+++++++. .++.|++|+.| +.....++.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~~~~i~is~d-~~~~~~~~~~~ 76 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK---GGAEVLGVSVD-SPFSHKAWAEK 76 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCC-CHHHHHHHHhc
Confidence 3699999 9999999999999999999999 78999999999999999999975 78999999987 45566677776
Q ss_pred CCceeeccCchhhHHHHHHcCcCcee---------eEEEECCCCceEecc
Q 018726 221 MPWLAIPYEDRARQDLCRIFNIKGIP---------ALVLIGPDGKTISTN 261 (351)
Q Consensus 221 ~~~~~~~~~~d~~~~~~~~~~i~~~P---------~~~lid~~G~v~~~~ 261 (351)
++-..+++..|....+.+.||+...| +++|||++|+|++++
T Consensus 77 ~~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 77 EGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred ccCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 63356677778778999999987654 899999999999984
No 40
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.72 E-value=1.9e-17 Score=131.06 Aligned_cols=106 Identities=20% Similarity=0.378 Sum_probs=92.2
Q ss_pred CCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC-HHHHHhhhccCC
Q 018726 145 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLNHSIMP 222 (351)
Q Consensus 145 pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~ 222 (351)
|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.++++++ .+++|++|.+ .+++.++.+.++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~--------~~i~i~~~~~~~~~~~~~~~~~~ 72 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADY--------PVVSVALRSGDDGAVARFMQKKG 72 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhC--------CEEEEEccCCCHHHHHHHHHHcC
Confidence 78888 8999999999999999999999999999999999999988764 4888888764 677888887766
Q ss_pred ceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726 223 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 223 ~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
..+|...|.+..+.+.|++.++|+++|+|++| ++++
T Consensus 73 -~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~ 108 (123)
T cd03011 73 -YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFV 108 (123)
T ss_pred -CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEE
Confidence 46676667778899999999999999999999 8776
No 41
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.72 E-value=4.2e-17 Score=135.88 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=94.8
Q ss_pred hhhccCCCcEe-c----------CCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEE-----
Q 018726 139 LLAIEGRDYVL-S----------RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEV----- 202 (351)
Q Consensus 139 ~~g~~~pdf~~-~----------~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~v----- 202 (351)
.+|.+.|...+ + .+.++++.++++||+.||+|||+||++|+.+.|.+.++.+ .++.+
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~-------~~~~~~~y~~ 96 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA-------AKFPPVKYQT 96 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH-------cCCCcccccc
Confidence 34666666554 1 2235567788999999999999999999999999999843 45667
Q ss_pred -EEEeCCCCHHHHHhhhc--------cCCceeeccCchhhHHHHHHcCcCceeeE-EEECCCCceEeccccceeeccCCc
Q 018726 203 -VLVSTDRDHKEFDLNHS--------IMPWLAIPYEDRARQDLCRIFNIKGIPAL-VLIGPDGKTISTNGKEMISLYGAK 272 (351)
Q Consensus 203 -v~v~~d~~~~~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~i~~~P~~-~lid~~G~v~~~~~~~~~~~~g~~ 272 (351)
++|+.|++......+.+ .+||. ++..|....+...|++.++|++ ||||++|+|++++ .|..
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~--~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~-------~G~l 167 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKKGKKENPWS--QVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVK-------EGAL 167 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHHhcccCCcc--eEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEE-------eCCC
Confidence 99999876544333432 23332 4666667788999999999988 8999999999984 4532
Q ss_pred CCCCchhhHHHHHHHHHHh
Q 018726 273 AFPFTESRIAEIETALKKE 291 (351)
Q Consensus 273 ~~p~~~~~~~~l~~~~~~~ 291 (351)
+++.++++...+++.
T Consensus 168 ----~~ee~e~~~~li~~l 182 (184)
T TIGR01626 168 ----SDSDIQTVISLVNGL 182 (184)
T ss_pred ----CHHHHHHHHHHHHHH
Confidence 444455555555543
No 42
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.71 E-value=8.1e-17 Score=130.79 Aligned_cols=117 Identities=26% Similarity=0.515 Sum_probs=95.3
Q ss_pred cCCCcEe-cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcccC-CceEEEEEeCCC---CHHHHHh
Q 018726 143 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTAN-HCFEVVLVSTDR---DHKEFDL 216 (351)
Q Consensus 143 ~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~-~~~~vv~v~~d~---~~~~~~~ 216 (351)
.+|+|++ +.+|+.+++++++||++||+||++||++ |..+++.|.++++++++ .+ .++++++|+.|. +.+.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~-~~~~~v~~v~vs~d~~~d~~~~~~~ 79 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA-DGGDDVQVVFISVDPERDTPEVLKA 79 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH-hhcCceEEEEEEECCCCCCHHHHHH
Confidence 3699999 9999999999999999999999999998 99999999999999985 11 359999999985 3466777
Q ss_pred hhccCC--ceeeccCchhhHHHHHHcCcCce--------------eeEEEECCCCceEec
Q 018726 217 NHSIMP--WLAIPYEDRARQDLCRIFNIKGI--------------PALVLIGPDGKTIST 260 (351)
Q Consensus 217 ~~~~~~--~~~~~~~~d~~~~~~~~~~i~~~--------------P~~~lid~~G~v~~~ 260 (351)
+.+.++ |..+....+....+++.||+... |+++|||++|+|+..
T Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 80 YAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 777654 44444333345789999997654 469999999999976
No 43
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.71 E-value=1.3e-16 Score=137.18 Aligned_cols=118 Identities=14% Similarity=0.189 Sum_probs=95.4
Q ss_pred hhccCCCcEe-cCCCcceeecccCC-cEE-EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HHH
Q 018726 140 LAIEGRDYVL-SRDHRKITVSELAG-KTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEF 214 (351)
Q Consensus 140 ~g~~~pdf~~-~~~g~~~~l~~~~g-k~v-ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~ 214 (351)
+|+.+|+|++ +..| .+++++++| |++ |++||++|||.|..+++.|++++++|++ .+++|++|++|... .+|
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~---~gv~vigvS~D~~~~~~~~ 76 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK---RNVKLIGLSVDSVESHIKW 76 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEECCCHHHHHHH
Confidence 4789999999 6666 689999998 654 5588999999999999999999999987 88999999999643 334
Q ss_pred HhhhccC--CceeeccCchhhHHHHHHcCcC--------ceeeEEEECCCCceEecc
Q 018726 215 DLNHSIM--PWLAIPYEDRARQDLCRIFNIK--------GIPALVLIGPDGKTISTN 261 (351)
Q Consensus 215 ~~~~~~~--~~~~~~~~~d~~~~~~~~~~i~--------~~P~~~lid~~G~v~~~~ 261 (351)
.+.++.. .-+.+|+..|.+..+++.||+. ..|++||||++|+|++..
T Consensus 77 ~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~ 133 (203)
T cd03016 77 IEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLIL 133 (203)
T ss_pred HhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEE
Confidence 4333221 2356788888899999999975 256799999999999873
No 44
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.70 E-value=1.6e-16 Score=137.30 Aligned_cols=120 Identities=13% Similarity=0.200 Sum_probs=98.6
Q ss_pred HhhhccCCCcEe-cCCCcceee-cccCCcEEEE-EEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH--
Q 018726 138 QLLAIEGRDYVL-SRDHRKITV-SELAGKTIGL-YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK-- 212 (351)
Q Consensus 138 ~~~g~~~pdf~~-~~~g~~~~l-~~~~gk~vll-~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~-- 212 (351)
..+|.++|+|++ +.+|+ +.+ ++++||+++| +||++||+.|..+++.|++++++|++ .+++|++||+|....
T Consensus 7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~---~g~~VigvS~Ds~~~h~ 82 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK---LNTELIGLSVDSNISHI 82 (215)
T ss_pred ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEECCCHHHHH
Confidence 357999999999 77775 556 5579997665 88999999999999999999999987 889999999997543
Q ss_pred HHHhhhccC-C-ceeeccCchhhHHHHHHcCcC-------ceeeEEEECCCCceEecc
Q 018726 213 EFDLNHSIM-P-WLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTISTN 261 (351)
Q Consensus 213 ~~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~i~-------~~P~~~lid~~G~v~~~~ 261 (351)
+|.++.+.. + -..+|+..|.+..+++.||+. ..|++||||++|+|++..
T Consensus 83 aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 140 (215)
T PRK13191 83 EWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLIL 140 (215)
T ss_pred HHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEE
Confidence 565555421 1 256888888889999999973 479999999999999873
No 45
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.70 E-value=6.8e-17 Score=132.23 Aligned_cols=114 Identities=22% Similarity=0.424 Sum_probs=94.7
Q ss_pred cCCCcEe-cCCCcceeecccC-CcE-EEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhc
Q 018726 143 EGRDYVL-SRDHRKITVSELA-GKT-IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 219 (351)
Q Consensus 143 ~~pdf~~-~~~g~~~~l~~~~-gk~-vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 219 (351)
.+|+|++ +.+|+.++++++. ++. +|++||++||++|+.+++.|+++++++.+ .++.|++|+.|... ....+.+
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~---~~v~vv~V~~~~~~-~~~~~~~ 76 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA---LGVELVAVGPESPE-KLEAFDK 76 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh---cCeEEEEEeCCCHH-HHHHHHH
Confidence 3789999 8999999999875 455 45555799999999999999999999986 78999999998653 3345555
Q ss_pred cCCceeeccCchhhHHHHHHcCcC-----------------------------ceeeEEEECCCCceEecc
Q 018726 220 IMPWLAIPYEDRARQDLCRIFNIK-----------------------------GIPALVLIGPDGKTISTN 261 (351)
Q Consensus 220 ~~~~~~~~~~~d~~~~~~~~~~i~-----------------------------~~P~~~lid~~G~v~~~~ 261 (351)
... +.+|+..|++..+.+.||+. .+|++||||++|+|++.+
T Consensus 77 ~~~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 77 GKF-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred hcC-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 444 57888888889999999984 799999999999999874
No 46
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.70 E-value=1.5e-16 Score=140.02 Aligned_cols=122 Identities=17% Similarity=0.129 Sum_probs=99.8
Q ss_pred HHhhhccCCCcEe-c-CCC--cceeeccc-CCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018726 137 EQLLAIEGRDYVL-S-RDH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD 210 (351)
Q Consensus 137 ~~~~g~~~pdf~~-~-~~g--~~~~l~~~-~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~ 210 (351)
..++|+++|+|++ + .+| +.++++++ +||++||+|| ++||++|..+++.|++++++|++ .+++|++||+|..
T Consensus 67 ~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~---~gv~VigIS~Ds~ 143 (261)
T PTZ00137 67 SSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE---RGVKVLGVSVDSP 143 (261)
T ss_pred cccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCCH
Confidence 3478999999998 5 445 45899998 8888888887 89999999999999999999987 8899999999973
Q ss_pred --HHHHHhh-hccC--CceeeccCchhhHHHHHHcCcC-----ceeeEEEECCCCceEecc
Q 018726 211 --HKEFDLN-HSIM--PWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN 261 (351)
Q Consensus 211 --~~~~~~~-~~~~--~~~~~~~~~d~~~~~~~~~~i~-----~~P~~~lid~~G~v~~~~ 261 (351)
..+|.+. .+.. .-..+|+..|.+..+++.||+. ..|++||||++|+|++..
T Consensus 144 ~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 144 FSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred HHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence 2445442 2221 2356888888889999999985 589999999999999874
No 47
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.69 E-value=1e-16 Score=167.50 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=100.6
Q ss_pred hhccCCCcEe-c--CCCcceee-cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC---CC--C
Q 018726 140 LAIEGRDYVL-S--RDHRKITV-SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST---DR--D 210 (351)
Q Consensus 140 ~g~~~pdf~~-~--~~g~~~~l-~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~---d~--~ 210 (351)
.|.++|+|.. + .+|+++++ ++++||++||+|||+||++|+.++|.|++++++|++ .++.|++|+. |. +
T Consensus 393 ~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~---~~~~vvgV~~~~~D~~~~ 469 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD---QPFTVVGVHSAKFDNEKD 469 (1057)
T ss_pred cCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC---CCeEEEEEeccccccccc
Confidence 4788999987 3 68889988 689999999999999999999999999999999975 6799999974 32 4
Q ss_pred HHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726 211 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
.+++++++..++ +.+|...|....+.+.|++.++|+++|||++|+++.+
T Consensus 470 ~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 470 LEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred HHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEE
Confidence 567777877666 4566666777889999999999999999999999988
No 48
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.69 E-value=2.9e-16 Score=134.78 Aligned_cols=120 Identities=18% Similarity=0.289 Sum_probs=98.8
Q ss_pred hhhccCCCcEe-c----CCCcceeecccCCcEEEEEEec-CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018726 139 LLAIEGRDYVL-S----RDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK 212 (351)
Q Consensus 139 ~~g~~~pdf~~-~----~~g~~~~l~~~~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~ 212 (351)
.+|+++|+|++ + .+++++++++++||+++|+||+ .||+.|..+++.|.+++++|.+ .+++|++||+|....
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~---~g~~vv~IS~d~~~~ 83 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE---LNCEVLACSMDSEYA 83 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEeCCCHHH
Confidence 57999999996 3 4568899999999999999996 7899999999999999999987 899999999997543
Q ss_pred --HHHhhhc---cCCceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726 213 --EFDLNHS---IMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 261 (351)
Q Consensus 213 --~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~ 261 (351)
.+..... ..+-+.+|+..|.+..+++.||+. .+|++||||++|+|++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~ 143 (199)
T PTZ00253 84 HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQIT 143 (199)
T ss_pred HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEE
Confidence 2221111 122367899999999999999985 479999999999999863
No 49
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.69 E-value=1.1e-16 Score=132.47 Aligned_cols=97 Identities=18% Similarity=0.267 Sum_probs=79.3
Q ss_pred hccCCCcEecCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhcc
Q 018726 141 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI 220 (351)
Q Consensus 141 g~~~pdf~~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 220 (351)
..+.|+|.+ .+|+.+++++++ +|+||++||++|++++|.|++++++++ +.|++|++|...+
T Consensus 52 ~~~~~~f~l-~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g------~~Vi~Vs~D~~~~-------- 112 (181)
T PRK13728 52 KPAPRWFRL-SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG------FSVFPYTLDGQGD-------- 112 (181)
T ss_pred CCCCCccCC-CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC------CEEEEEEeCCCCC--------
Confidence 345678886 589999999987 778999999999999999999999873 7899999986521
Q ss_pred CCceeeccCch-hhHHHHHHcCc--CceeeEEEECCCCceEe
Q 018726 221 MPWLAIPYEDR-ARQDLCRIFNI--KGIPALVLIGPDGKTIS 259 (351)
Q Consensus 221 ~~~~~~~~~~d-~~~~~~~~~~i--~~~P~~~lid~~G~v~~ 259 (351)
..+|...+ ....+.+.|++ .++|++||||++|+++.
T Consensus 113 ---~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 ---TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred ---CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 35666553 45667888995 69999999999999975
No 50
>PRK13189 peroxiredoxin; Provisional
Probab=99.68 E-value=4.7e-16 Score=135.15 Aligned_cols=119 Identities=15% Similarity=0.230 Sum_probs=96.5
Q ss_pred hhhccCCCcEe-cCCCcceeecc-cCCcEEE-EEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HH
Q 018726 139 LLAIEGRDYVL-SRDHRKITVSE-LAGKTIG-LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KE 213 (351)
Q Consensus 139 ~~g~~~pdf~~-~~~g~~~~l~~-~~gk~vl-l~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~ 213 (351)
.+|..+|+|++ +..| .+++++ ++||+++ ++||++||+.|..+++.|++++++|++ .+++|++||+|... .+
T Consensus 10 ~vG~~aPdF~~~~~~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~---~~v~VigvS~D~~~~h~a 85 (222)
T PRK13189 10 LIGDKFPEFEVKTTHG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE---LNTELIGLSIDQVFSHIK 85 (222)
T ss_pred cCCCcCCCcEeEcCCC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEECCCHHHHHH
Confidence 57999999999 6776 477776 4999555 577999999999999999999999987 88999999999754 34
Q ss_pred HHhhhcc-CC-ceeeccCchhhHHHHHHcCcC-------ceeeEEEECCCCceEecc
Q 018726 214 FDLNHSI-MP-WLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTISTN 261 (351)
Q Consensus 214 ~~~~~~~-~~-~~~~~~~~d~~~~~~~~~~i~-------~~P~~~lid~~G~v~~~~ 261 (351)
|.+.+.. .+ -..+|+..|.+..+++.||+. .+|++||||++|+|++..
T Consensus 86 w~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 142 (222)
T PRK13189 86 WVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAIL 142 (222)
T ss_pred HHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEE
Confidence 4443322 22 256788888889999999975 579999999999998773
No 51
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.66 E-value=9e-16 Score=124.22 Aligned_cols=75 Identities=19% Similarity=0.431 Sum_probs=66.2
Q ss_pred cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726 161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 240 (351)
Q Consensus 161 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 240 (351)
.+||+++|+||++||++|+.+.|.|.++++++. ..+.|+.|++|.+. ...+.++|
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~----~~~~~v~v~vd~~~---------------------~~~~~~~~ 72 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG----DQVNFVMLNVDNPK---------------------WLPEIDRY 72 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc----cCeeEEEEEcCCcc---------------------cHHHHHHc
Confidence 468999999999999999999999999999986 45789999888642 24678899
Q ss_pred CcCceeeEEEECCCCceEec
Q 018726 241 NIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 241 ~i~~~P~~~lid~~G~v~~~ 260 (351)
+|.++|+++|+|++|+++.+
T Consensus 73 ~V~~iPt~v~~~~~G~~v~~ 92 (142)
T cd02950 73 RVDGIPHFVFLDREGNEEGQ 92 (142)
T ss_pred CCCCCCEEEEECCCCCEEEE
Confidence 99999999999999999987
No 52
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.5e-15 Score=141.91 Aligned_cols=181 Identities=17% Similarity=0.277 Sum_probs=117.7
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKKLRIR 117 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 117 (351)
.+++++|.||+|||++|+.+.|.+.+++..+++. +.+.++|++.. .+++.+.+.++|++.+ .+.....+.+.
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-----~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~ 120 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-----VKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGP 120 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-----eEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCc
Confidence 6789999999999999999999999999999874 66677777654 4777777777788877 33112222222
Q ss_pred hhhhHHhhhccccccccchHHhhhccCCCcEecCCCcceeec-ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhccc
Q 018726 118 KRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTA 196 (351)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~l~-~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~ 196 (351)
.....+......... ..+....+.-...+....+..- ......++|.|+++||++|+.+.|.+.++...+..
T Consensus 121 ~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-- 193 (383)
T KOG0191|consen 121 RNAESLAEFLIKELE-----PSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-- 193 (383)
T ss_pred ccHHHHHHHHHHhhc-----cccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhcc--
Confidence 222222222111111 1111111110001111111111 11245789999999999999999999999998862
Q ss_pred CCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCc
Q 018726 197 NHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 256 (351)
Q Consensus 197 ~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~ 256 (351)
...+.+..++.+. ...++..+++.++|++.++-++..
T Consensus 194 ~~~v~~~~~d~~~-----------------------~~~~~~~~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 194 KENVELGKIDATV-----------------------HKSLASRLEVRGYPTLKLFPPGEE 230 (383)
T ss_pred CcceEEEeeccch-----------------------HHHHhhhhcccCCceEEEecCCCc
Confidence 3667777776662 478899999999999999954444
No 53
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.64 E-value=3.2e-15 Score=145.00 Aligned_cols=65 Identities=18% Similarity=0.464 Sum_probs=51.3
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF 106 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~ 106 (351)
.++++++|.|||+||++|+++.|.+.++++.+++.+. .+.++.+|++.. .+++.++...+|++.+
T Consensus 16 ~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~--~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 16 KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGP--PIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCC--ceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 3688999999999999999999999999999987653 355566665543 4677777777787766
No 54
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.59 E-value=1.1e-14 Score=122.19 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=64.5
Q ss_pred cCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------CCHHHH
Q 018726 143 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHKEF 214 (351)
Q Consensus 143 ~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~~~ 214 (351)
..++|++ +.+|+.+++++++||++||+|||+||++|. +.+.|++++++|++ .++.|++|+++ .+.+++
T Consensus 4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~---~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWAD---QGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh---CCeEEEEeeccccccCCCCCHHHH
Confidence 4678999 999999999999999999999999999996 68999999999986 78999999985 345677
Q ss_pred Hhhhc
Q 018726 215 DLNHS 219 (351)
Q Consensus 215 ~~~~~ 219 (351)
+++.+
T Consensus 80 ~~f~~ 84 (183)
T PRK10606 80 KTYCR 84 (183)
T ss_pred HHHHH
Confidence 77775
No 55
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.58 E-value=1.7e-14 Score=110.39 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=63.3
Q ss_pred ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726 160 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 239 (351)
Q Consensus 160 ~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 239 (351)
+.+||++||+|||+||++|+.+.|.|++++++++ ++.++.|+.|.+. ....++++
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~-----~v~~~~vd~d~~~--------------------~~~~l~~~ 66 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN-----DVVFLLVNGDEND--------------------STMELCRR 66 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----CCEEEEEECCCCh--------------------HHHHHHHH
Confidence 3468999999999999999999999999999883 4678888877542 02478999
Q ss_pred cCcCceeeEEEECCCCceEec
Q 018726 240 FNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 240 ~~i~~~P~~~lid~~G~v~~~ 260 (351)
|+|.++||++++ ++|+++.+
T Consensus 67 ~~V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 67 EKIIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred cCCCcCCEEEEE-eCCeEEEE
Confidence 999999998888 89998877
No 56
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.58 E-value=1.1e-14 Score=111.74 Aligned_cols=72 Identities=18% Similarity=0.438 Sum_probs=64.8
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
.++++||.|||+||+||+.+.|.|.+++++++ ..+.++.|++|.. ..++++|+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~----~~v~f~kVDvD~~-----------------------~~la~~~~ 65 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS----NFAVIYLVDIDEV-----------------------PDFNKMYE 65 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcc----CceEEEEEECCCC-----------------------HHHHHHcC
Confidence 46799999999999999999999999999986 4578888888874 68999999
Q ss_pred cCceeeEEEECCCCceEecc
Q 018726 242 IKGIPALVLIGPDGKTISTN 261 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~~ 261 (351)
|.++||++++ ++|+++.+.
T Consensus 66 V~~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 66 LYDPPTVMFF-FRNKHMKID 84 (114)
T ss_pred CCCCCEEEEE-ECCEEEEEE
Confidence 9999999999 899998874
No 57
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6e-15 Score=116.49 Aligned_cols=77 Identities=25% Similarity=0.551 Sum_probs=68.3
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
.+++|+|+|||+||+||+.+.|.|+++..+|. ..+.+..|++|.. .+++..|+
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~----g~~k~~kvdtD~~-----------------------~ela~~Y~ 112 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYA----GKFKLYKVDTDEH-----------------------PELAEDYE 112 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhc----CeEEEEEEccccc-----------------------cchHhhcc
Confidence 36899999999999999999999999999996 7899999999975 69999999
Q ss_pred cCceeeEEEECCCCceEeccccceeeccCCcC
Q 018726 242 IKGIPALVLIGPDGKTISTNGKEMISLYGAKA 273 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~ 273 (351)
|.++||++++ ++|+.+.+ +.|+..
T Consensus 113 I~avPtvlvf-knGe~~d~-------~vG~~~ 136 (150)
T KOG0910|consen 113 ISAVPTVLVF-KNGEKVDR-------FVGAVP 136 (150)
T ss_pred eeeeeEEEEE-ECCEEeee-------ecccCC
Confidence 9999999999 78887755 567654
No 58
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.56 E-value=1.4e-14 Score=116.73 Aligned_cols=73 Identities=29% Similarity=0.632 Sum_probs=62.7
Q ss_pred ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhc-----CCcEEEEEEEecCChhhHHHHHhcCC--ceeeecC
Q 018726 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR-----GTELEVIFISFDHDENGFEEHFKCMP--WLAVPFD 107 (351)
Q Consensus 35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~-----~~~~~iv~i~~d~~~~~~~~~~~~~~--~~~~~~~ 107 (351)
+++++++||+|+|+|||+||++|++++|.|.+++++++++ ...+++++|+.|.+.+.+.++++.++ |+.+++.
T Consensus 18 ~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~ 97 (146)
T cd03008 18 EIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFE 97 (146)
T ss_pred ccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeeccc
Confidence 4667899999999999999999999999999999988764 23499999999988877888888887 7777773
No 59
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.56 E-value=1.3e-14 Score=116.19 Aligned_cols=82 Identities=54% Similarity=1.148 Sum_probs=74.1
Q ss_pred ceeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceee
Q 018726 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104 (351)
Q Consensus 26 ~~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~ 104 (351)
++|.+.+|+ +++++++||+|+|+||++||++|+.++|.+.++++++.+.+..+++++|++|.+.+.+.++++..+|..+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 478899999 9999999999999999999999999999999999999876445899999999888888888888888888
Q ss_pred ecC
Q 018726 105 PFD 107 (351)
Q Consensus 105 ~~~ 107 (351)
++.
T Consensus 81 ~~~ 83 (131)
T cd03009 81 PFS 83 (131)
T ss_pred ccC
Confidence 773
No 60
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.55 E-value=1.4e-14 Score=115.39 Aligned_cols=98 Identities=37% Similarity=0.730 Sum_probs=84.9
Q ss_pred ceeeCCCCc-cccc-CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh--cCCc
Q 018726 26 EFLLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK--CMPW 101 (351)
Q Consensus 26 ~~l~~~~g~-~~~~-~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~--~~~~ 101 (351)
..|...+|. +..+ .++||+|.++|.|.||+||+.|.|.+.++|+++++++..++|+|||-|.+.+.+.+++. ..+|
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W 94 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDW 94 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCe
Confidence 668888888 6666 68999999999999999999999999999999999988999999999999999999987 5789
Q ss_pred eeeecChHHHHHHhhhhhhhHH
Q 018726 102 LAVPFDETLHKKLRIRKRREEL 123 (351)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~l 123 (351)
+.+||.....+++...+.+..+
T Consensus 95 ~~iPf~d~~~~~l~~ky~v~~i 116 (157)
T KOG2501|consen 95 LAIPFGDDLIQKLSEKYEVKGI 116 (157)
T ss_pred EEecCCCHHHHHHHHhcccCcC
Confidence 9999977666666655554433
No 61
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.54 E-value=1.8e-14 Score=117.38 Aligned_cols=86 Identities=19% Similarity=0.250 Sum_probs=61.1
Q ss_pred CcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchh
Q 018726 153 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA 232 (351)
Q Consensus 153 g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~ 232 (351)
|+.++++ ++.+|+|||+||++|++++|.|++++++++ +.|++|++|.... . .+|...+.
T Consensus 44 G~~~~l~----~~~lvnFWAsWCppCr~e~P~L~~l~~~~~------~~Vi~Vs~d~~~~------~-----~fp~~~~~ 102 (153)
T TIGR02738 44 GRHANQD----DYALVFFYQSTCPYCHQFAPVLKRFSQQFG------LPVYAFSLDGQGL------T-----GFPDPLPA 102 (153)
T ss_pred chhhhcC----CCEEEEEECCCChhHHHHHHHHHHHHHHcC------CcEEEEEeCCCcc------c-----ccccccCC
Confidence 4444444 456999999999999999999999998863 5789999886431 1 12222111
Q ss_pred -hHHHHHHc---CcCceeeEEEECCCCceEe
Q 018726 233 -RQDLCRIF---NIKGIPALVLIGPDGKTIS 259 (351)
Q Consensus 233 -~~~~~~~~---~i~~~P~~~lid~~G~v~~ 259 (351)
...+...| ++.++|++|+||++|+++.
T Consensus 103 ~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 103 TPEVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred chHHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 12233455 8899999999999988654
No 62
>PHA02278 thioredoxin-like protein
Probab=99.53 E-value=5e-14 Score=107.13 Aligned_cols=75 Identities=16% Similarity=0.275 Sum_probs=62.8
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
++++++|+|||+||+||+.+.|.+.++.+++. ..+.++.|++|.+. .+ ...++++|+
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~----~~~~~~~vdvd~~~------------------~d-~~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGD----IKKPILTLNLDAED------------------VD-REKAVKLFD 69 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc----CCceEEEEECCccc------------------cc-cHHHHHHCC
Confidence 57899999999999999999999999988754 44678888888641 00 257899999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
|.++||++++ ++|+.+.+
T Consensus 70 I~~iPT~i~f-k~G~~v~~ 87 (103)
T PHA02278 70 IMSTPVLIGY-KDGQLVKK 87 (103)
T ss_pred CccccEEEEE-ECCEEEEE
Confidence 9999999999 88998877
No 63
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.53 E-value=9.8e-14 Score=105.96 Aligned_cols=71 Identities=18% Similarity=0.371 Sum_probs=61.9
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
.+++++|+|||+||++|+.+.|.|.+++++++. ..+.++.++.| . ..++++|+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~---~~~~~~~vd~d-~-----------------------~~~~~~~~ 68 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD---DLLHFATAEAD-T-----------------------IDTLKRYR 68 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC---CcEEEEEEeCC-C-----------------------HHHHHHcC
Confidence 478999999999999999999999999998863 45778888877 3 46789999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
|.++||++++ ++|+++.+
T Consensus 69 v~~~Pt~~~~-~~g~~~~~ 86 (102)
T cd02948 69 GKCEPTFLFY-KNGELVAV 86 (102)
T ss_pred CCcCcEEEEE-ECCEEEEE
Confidence 9999999888 78988877
No 64
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.5e-13 Score=113.02 Aligned_cols=120 Identities=22% Similarity=0.337 Sum_probs=101.6
Q ss_pred HhhhccCCCcEe-cC-CCc---ceeecccCCcEEEEEEecCCCh-hhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC-
Q 018726 138 QLLAIEGRDYVL-SR-DHR---KITVSELAGKTIGLYFGAHWCP-PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD- 210 (351)
Q Consensus 138 ~~~g~~~pdf~~-~~-~g~---~~~l~~~~gk~vll~F~a~~C~-~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~- 210 (351)
.++|.++|+|+. .. .|. +++++++.||+++|+||...-. .|..++..+++++++|++ .+++|++||+|..
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~---~g~eVigvS~Ds~f 79 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQK---RGVEVIGVSTDSVF 79 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHH---cCCEEEEEecCcHH
Confidence 478999999999 44 553 8999999999999999976544 499999999999999998 9999999999974
Q ss_pred -HHHHHhhhccCC---ceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEec
Q 018726 211 -HKEFDLNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 260 (351)
Q Consensus 211 -~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~ 260 (351)
..+|.+...... -..+|...|...++++.||+. ++..+|||||+|+|++.
T Consensus 80 sH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~ 139 (194)
T COG0450 80 SHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHI 139 (194)
T ss_pred HHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEE
Confidence 467777754333 378999999999999999974 57889999999999877
No 65
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.52 E-value=7.3e-14 Score=106.12 Aligned_cols=69 Identities=16% Similarity=0.338 Sum_probs=57.6
Q ss_pred cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726 159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 238 (351)
Q Consensus 159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 238 (351)
++++||+++|.|||+||++|+.+.|.|++++++++ ++.++.|+.+.. ...+++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-----~~~~~~vd~~~~----------------------~~~l~~ 66 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-----QIRHLAIEESSI----------------------KPSLLS 66 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-----cCceEEEECCCC----------------------CHHHHH
Confidence 45689999999999999999999999999999885 256666655421 368899
Q ss_pred HcCcCceeeEEEECCCC
Q 018726 239 IFNIKGIPALVLIGPDG 255 (351)
Q Consensus 239 ~~~i~~~P~~~lid~~G 255 (351)
+|+|.++||+++++ +|
T Consensus 67 ~~~V~~~PT~~lf~-~g 82 (100)
T cd02999 67 RYGVVGFPTILLFN-ST 82 (100)
T ss_pred hcCCeecCEEEEEc-CC
Confidence 99999999999995 55
No 66
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.52 E-value=1.1e-13 Score=107.37 Aligned_cols=73 Identities=22% Similarity=0.352 Sum_probs=64.4
Q ss_pred cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726 161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 240 (351)
Q Consensus 161 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 240 (351)
..|++++|+||++||++|+.+.|.+.++.++++. .++.++.|++|.. ..++++|
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~d~~-----------------------~~l~~~~ 75 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP---LGVGIATVNAGHE-----------------------RRLARKL 75 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh---cCceEEEEecccc-----------------------HHHHHHc
Confidence 3689999999999999999999999999999974 4688888888754 5789999
Q ss_pred CcCceeeEEEECCCCceEec
Q 018726 241 NIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 241 ~i~~~P~~~lid~~G~v~~~ 260 (351)
+|.++||++++ ++|+++.+
T Consensus 76 ~V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 76 GAHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred CCccCCEEEEE-ECCEEEEE
Confidence 99999999999 68988766
No 67
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.50 E-value=2.3e-13 Score=102.65 Aligned_cols=71 Identities=18% Similarity=0.368 Sum_probs=62.6
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
+|++++|+||++||++|+.+.|.++++++.++ ..+.++.|+++.. ..++++|+
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~l~~~~~ 63 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ----GQFVLAKVNCDAQ-----------------------PQIAQQFG 63 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhC----CcEEEEEEeccCC-----------------------HHHHHHcC
Confidence 47899999999999999999999999999986 4577888887764 68999999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
+.++|++++++ +|+++.+
T Consensus 64 i~~~Pt~~~~~-~g~~~~~ 81 (96)
T cd02956 64 VQALPTVYLFA-AGQPVDG 81 (96)
T ss_pred CCCCCEEEEEe-CCEEeee
Confidence 99999999995 8988765
No 68
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.49 E-value=1.2e-13 Score=110.71 Aligned_cols=80 Identities=53% Similarity=1.113 Sum_probs=68.7
Q ss_pred eeeCCCCcccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC-Cceeee
Q 018726 27 FLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM-PWLAVP 105 (351)
Q Consensus 27 ~l~~~~g~~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~-~~~~~~ 105 (351)
+|+|.+..+++++++||+++|+||++||++|+.++|.++++++++++.+..+++++|++|.+.+.+.++++.+ +|+.++
T Consensus 2 ~~~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 2 FLLDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred ccccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 5677773399999999999999999999999999999999999998753348999999998877788888877 577777
Q ss_pred c
Q 018726 106 F 106 (351)
Q Consensus 106 ~ 106 (351)
+
T Consensus 82 ~ 82 (132)
T cd02964 82 F 82 (132)
T ss_pred c
Confidence 6
No 69
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.5e-13 Score=103.38 Aligned_cols=74 Identities=23% Similarity=0.569 Sum_probs=64.4
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
+|.++|+|+|+||+||+.+.|.+.+++.+|+ + +.++.|++|. ...+++.|++
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~----~-v~Flkvdvde-----------------------~~~~~~~~~V 72 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYP----D-VVFLKVDVDE-----------------------LEEVAKEFNV 72 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCC----C-CEEEEEeccc-----------------------CHhHHHhcCc
Confidence 6999999999999999999999999999996 3 7888888886 2789999999
Q ss_pred CceeeEEEECCCCceEeccccceeeccCCc
Q 018726 243 KGIPALVLIGPDGKTISTNGKEMISLYGAK 272 (351)
Q Consensus 243 ~~~P~~~lid~~G~v~~~~~~~~~~~~g~~ 272 (351)
.++||++++ ++|+.+.+ ..|+.
T Consensus 73 ~~~PTf~f~-k~g~~~~~-------~vGa~ 94 (106)
T KOG0907|consen 73 KAMPTFVFY-KGGEEVDE-------VVGAN 94 (106)
T ss_pred eEeeEEEEE-ECCEEEEE-------EecCC
Confidence 999999999 77766655 67765
No 70
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.46 E-value=3e-13 Score=111.24 Aligned_cols=117 Identities=16% Similarity=0.209 Sum_probs=94.4
Q ss_pred hhccCCCcEe-cCC---Ccceeecc-cCCcEEEEEE-ecCCChhhHHh-HHHHHHHHHHhhcccCCce-EEEEEeCCCCH
Q 018726 140 LAIEGRDYVL-SRD---HRKITVSE-LAGKTIGLYF-GAHWCPPCRSF-TSQLIEVYNELKTTANHCF-EVVLVSTDRDH 211 (351)
Q Consensus 140 ~g~~~pdf~~-~~~---g~~~~l~~-~~gk~vll~F-~a~~C~~C~~~-~~~l~~l~~~~~~~~~~~~-~vv~v~~d~~~ 211 (351)
+|+++|+|++ +.+ |+.+++++ ++||++||+| .+.|||.|..+ ++.|.+.+++|.+ .++ .|++||.|..
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~---~g~~~V~~iS~D~~- 76 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA---KGVDEVICVSVNDP- 76 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH---CCCCEEEEEECCCH-
Confidence 4789999999 664 89999999 5887555554 67899999999 9999999999986 787 6999999954
Q ss_pred HHHHhhhccCCc-eeeccCchhhHHHHHHcCcC-----------ceeeEEEECCCCceEecc
Q 018726 212 KEFDLNHSIMPW-LAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN 261 (351)
Q Consensus 212 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~i~-----------~~P~~~lid~~G~v~~~~ 261 (351)
...+++.+..+. ..+|+..|.+..+++.||+. ..+.++||| +|+|++..
T Consensus 77 ~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~ 137 (155)
T cd03013 77 FVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLF 137 (155)
T ss_pred HHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEE
Confidence 345555555554 46888999999999999972 247889999 79999873
No 71
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.46 E-value=3e-13 Score=103.12 Aligned_cols=81 Identities=20% Similarity=0.367 Sum_probs=66.6
Q ss_pred CCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCch
Q 018726 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR 231 (351)
Q Consensus 152 ~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d 231 (351)
+++.+......+++++|.||++||++|+.+.|.+.+++++++ ..+.+..|++|..
T Consensus 7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~----~~~~~~~vd~~~~--------------------- 61 (101)
T cd03003 7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD----GVIRIGAVNCGDD--------------------- 61 (101)
T ss_pred CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc----CceEEEEEeCCcc---------------------
Confidence 334444333456899999999999999999999999999987 4588888988864
Q ss_pred hhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726 232 ARQDLCRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 232 ~~~~~~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
..++++|+|.++||++++ ++|+.+.+
T Consensus 62 --~~~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (101)
T cd03003 62 --RMLCRSQGVNSYPSLYVF-PSGMNPEK 87 (101)
T ss_pred --HHHHHHcCCCccCEEEEE-cCCCCccc
Confidence 678999999999999999 78876544
No 72
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.45 E-value=3.9e-13 Score=106.67 Aligned_cols=85 Identities=25% Similarity=0.491 Sum_probs=64.9
Q ss_pred CC-cEEEEEEecCCChhhHHhHHHHH---HHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHH
Q 018726 162 AG-KTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 237 (351)
Q Consensus 162 ~g-k~vll~F~a~~C~~C~~~~~~l~---~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 237 (351)
.| |+++|+||++||++|+.+.+.+. .+.+.++ .++.++.|++|.+.... . +.........++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~ 77 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR----AHFVVVYINIDGDKEVT-D---------FDGEALSEKELA 77 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH----hheEEEEEEccCCceee-c---------cCCCCccHHHHH
Confidence 57 89999999999999999999885 5555554 56888888887653211 1 111112357899
Q ss_pred HHcCcCceeeEEEECCC-CceEec
Q 018726 238 RIFNIKGIPALVLIGPD-GKTIST 260 (351)
Q Consensus 238 ~~~~i~~~P~~~lid~~-G~v~~~ 260 (351)
++|++.++||++++|++ |+++.+
T Consensus 78 ~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 78 RKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred HHcCCccccEEEEEcCCCCceeEE
Confidence 99999999999999999 898877
No 73
>PHA02278 thioredoxin-like protein
Probab=99.44 E-value=9.2e-14 Score=105.68 Aligned_cols=81 Identities=14% Similarity=0.230 Sum_probs=62.6
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHhcCCceeeec--ChHHHHHHh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFKCMPWLAVPF--DETLHKKLR 115 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~~~~~~~~~~--~~~~~~~l~ 115 (351)
++++++|+|||+||+||+.+.|.+.++++++... ..++.|++|.++ ..+.+.+++..+|++.+ +|+...++.
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~~~~ 89 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVKKYE 89 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEEEEe
Confidence 6899999999999999999999999999875443 467888888653 45777788888888887 777776666
Q ss_pred hhhhhhHHh
Q 018726 116 IRKRREELK 124 (351)
Q Consensus 116 ~~~~~~~l~ 124 (351)
|....+.+.
T Consensus 90 G~~~~~~l~ 98 (103)
T PHA02278 90 DQVTPMQLQ 98 (103)
T ss_pred CCCCHHHHH
Confidence 644444443
No 74
>PRK09381 trxA thioredoxin; Provisional
Probab=99.44 E-value=1.2e-12 Score=101.13 Aligned_cols=71 Identities=30% Similarity=0.577 Sum_probs=63.2
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
.+++++|+||++||++|+.+.|.+++++++++ +++.++.|+++.. ..++++|+
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~ 72 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN-----------------------PGTAPKYG 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhC----CCcEEEEEECCCC-----------------------hhHHHhCC
Confidence 36899999999999999999999999999987 4688899988864 56788999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
+.++|+++++ ++|+++.+
T Consensus 73 v~~~Pt~~~~-~~G~~~~~ 90 (109)
T PRK09381 73 IRGIPTLLLF-KNGEVAAT 90 (109)
T ss_pred CCcCCEEEEE-eCCeEEEE
Confidence 9999999999 79998876
No 75
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.43 E-value=1.2e-12 Score=100.34 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=62.5
Q ss_pred CCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 238 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 238 (351)
+||+++|+||++||++|+.+.+.+ .++.+.++ +++.++.|+++.+. +....+++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~-------------------~~~~~~~~ 66 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK----KDVVLLRADWTKND-------------------PEITALLK 66 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh----CCeEEEEEecCCCC-------------------HHHHHHHH
Confidence 579999999999999999999887 57777775 46888888876431 11358889
Q ss_pred HcCcCceeeEEEECC-CCceEec
Q 018726 239 IFNIKGIPALVLIGP-DGKTIST 260 (351)
Q Consensus 239 ~~~i~~~P~~~lid~-~G~v~~~ 260 (351)
+|++.++||++++++ +|+++.+
T Consensus 67 ~~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 67 RFGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred HcCCCCCCEEEEECCCCCCCCcc
Confidence 999999999999988 8988776
No 76
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.43 E-value=9e-13 Score=99.21 Aligned_cols=73 Identities=38% Similarity=0.868 Sum_probs=60.3
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC--CceeeecChHHHHHHh
Q 018726 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM--PWLAVPFDETLHKKLR 115 (351)
Q Consensus 42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~ 115 (351)
||+++|+|||+||++|+.+.|.+.++++++++ +.++++++|++|.+.+.+.++++.. +|+.++++......+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 75 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELL 75 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHH
Confidence 89999999999999999999999999999994 4459999999998888899998877 8888888544333433
No 77
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.43 E-value=3e-13 Score=105.65 Aligned_cols=78 Identities=21% Similarity=0.462 Sum_probs=59.5
Q ss_pred eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHH
Q 018726 157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL 236 (351)
Q Consensus 157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 236 (351)
..+..++|+++|+|||+||++|+.+.|.+.+..+... ....++.|.+|.+. ...
T Consensus 13 ~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~----~~~~fv~v~vd~~~----------------------~~~ 66 (117)
T cd02959 13 KEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE----LSHNFVMVNLEDDE----------------------EPK 66 (117)
T ss_pred HHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh----hcCcEEEEEecCCC----------------------Cch
Confidence 3344568999999999999999999999988766543 22346666776542 234
Q ss_pred HHHcCcCc--eeeEEEECCCCceEec
Q 018726 237 CRIFNIKG--IPALVLIGPDGKTIST 260 (351)
Q Consensus 237 ~~~~~i~~--~P~~~lid~~G~v~~~ 260 (351)
.+.|++.+ +||++++|++|+++.+
T Consensus 67 ~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 67 DEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred hhhcccCCCccceEEEECCCCCCchh
Confidence 45788876 9999999999999876
No 78
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=9.8e-13 Score=115.03 Aligned_cols=71 Identities=25% Similarity=0.515 Sum_probs=64.9
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
+.++|||+||++||++|+...|.|.++..+|+ ..+.+..|++|.+ ..++.+||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~----G~f~LakvN~D~~-----------------------p~vAaqfg 94 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK----GKFKLAKVNCDAE-----------------------PMVAAQFG 94 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhC----CceEEEEecCCcc-----------------------hhHHHHhC
Confidence 45799999999999999999999999999998 7899999999975 68999999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
|+++||+|++ ++|+.+.-
T Consensus 95 iqsIPtV~af-~dGqpVdg 112 (304)
T COG3118 95 VQSIPTVYAF-KDGQPVDG 112 (304)
T ss_pred cCcCCeEEEe-eCCcCccc
Confidence 9999999999 88887755
No 79
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.40 E-value=3.7e-13 Score=102.23 Aligned_cols=78 Identities=10% Similarity=0.220 Sum_probs=56.0
Q ss_pred CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI 116 (351)
Q Consensus 39 ~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 116 (351)
+++||+++|.|||+||++|++++|.++++++++++ +.++.|+.+.+...+.+.++...+||+.+ +| ...++.|
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G 89 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNG 89 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecC
Confidence 46899999999999999999999999999999853 34444433322345777778778888876 44 4445555
Q ss_pred hhhhh
Q 018726 117 RKRRE 121 (351)
Q Consensus 117 ~~~~~ 121 (351)
....+
T Consensus 90 ~~~~~ 94 (100)
T cd02999 90 TRTLD 94 (100)
T ss_pred CCCHH
Confidence 43333
No 80
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.40 E-value=1.7e-12 Score=100.42 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=59.6
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHH-HHc
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC-RIF 240 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~ 240 (351)
.++++||.|||+||++|+.+.|.+.+++++++ +.+.++.|++|.. ..++ ++|
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~----~~v~~~~Vd~d~~-----------------------~~l~~~~~ 80 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS----DQVLFVAINCWWP-----------------------QGKCRKQK 80 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------------hHHHHHhc
Confidence 56899999999999999999999999999996 4588888888864 4666 689
Q ss_pred CcCceeeEEEECCCCceE
Q 018726 241 NIKGIPALVLIGPDGKTI 258 (351)
Q Consensus 241 ~i~~~P~~~lid~~G~v~ 258 (351)
+|.++||+.++ ++|+..
T Consensus 81 ~I~~~PTl~lf-~~g~~~ 97 (113)
T cd03006 81 HFFYFPVIHLY-YRSRGP 97 (113)
T ss_pred CCcccCEEEEE-ECCccc
Confidence 99999999999 777643
No 81
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.40 E-value=6.5e-13 Score=102.74 Aligned_cols=80 Identities=8% Similarity=0.073 Sum_probs=55.6
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR 117 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 117 (351)
.++++++|.|||+||++|+.++|.++++++.+++. +.++.|++|.+.....+.+++..+|++.+ +|+...++.|.
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~~~~~y~G~ 103 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSRGPIEYKGP 103 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCChHHHHHhcCCcccCEEEEEECCccceEEeCC
Confidence 47899999999999999999999999999999754 44555554443333434566566667665 66655555554
Q ss_pred hhhhH
Q 018726 118 KRREE 122 (351)
Q Consensus 118 ~~~~~ 122 (351)
.+.+.
T Consensus 104 ~~~~~ 108 (113)
T cd03006 104 MRAPY 108 (113)
T ss_pred CCHHH
Confidence 44333
No 82
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.40 E-value=2.1e-12 Score=104.97 Aligned_cols=74 Identities=18% Similarity=0.378 Sum_probs=64.7
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
++++++|+||++||++|+.+.|.++++++++.. .++.++.|++|.. .+++++|+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~---~~v~f~~VDvd~~-----------------------~~la~~~~ 99 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN---NNLKFGKIDIGRF-----------------------PNVAEKFR 99 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc---CCeEEEEEECCCC-----------------------HHHHHHcC
Confidence 467999999999999999999999999999864 5699999999875 57888888
Q ss_pred cCc------eeeEEEECCCCceEeccc
Q 018726 242 IKG------IPALVLIGPDGKTISTNG 262 (351)
Q Consensus 242 i~~------~P~~~lid~~G~v~~~~~ 262 (351)
|.+ +||++++ ++|+.+.+..
T Consensus 100 V~~~~~v~~~PT~ilf-~~Gk~v~r~~ 125 (152)
T cd02962 100 VSTSPLSKQLPTIILF-QGGKEVARRP 125 (152)
T ss_pred ceecCCcCCCCEEEEE-ECCEEEEEEe
Confidence 877 9999999 7999887743
No 83
>PRK10996 thioredoxin 2; Provisional
Probab=99.39 E-value=4e-12 Score=102.60 Aligned_cols=71 Identities=27% Similarity=0.579 Sum_probs=62.4
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
.+|+++|+||++||++|+.+.|.|.++++++. .++.++.|+++.. ..++++|+
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~ 103 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS----GKVRFVKVNTEAE-----------------------RELSARFR 103 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCeEEEEEeCCCC-----------------------HHHHHhcC
Confidence 47999999999999999999999999999876 5678888877653 68899999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
|.++|+++++ ++|+++.+
T Consensus 104 V~~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 104 IRSIPTIMIF-KNGQVVDM 121 (139)
T ss_pred CCccCEEEEE-ECCEEEEE
Confidence 9999999998 68998876
No 84
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.1e-13 Score=106.83 Aligned_cols=83 Identities=20% Similarity=0.412 Sum_probs=64.5
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH-HhcCCceeee-c-ChHHHHHHhhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH-FKCMPWLAVP-F-DETLHKKLRIR 117 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~l~~~ 117 (351)
.+.||+|+|||+||+||+.+.|.++++..+|.++ +++..|+.|.+-+...+| ++..| ++. | +|+...++.|.
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~ela~~Y~I~avP--tvlvfknGe~~d~~vG~ 134 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHPELAEDYEISAVP--TVLVFKNGEKVDRFVGA 134 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccccchHhhcceeeee--EEEEEECCEEeeeeccc
Confidence 7899999999999999999999999999999776 777777777666545444 55555 444 3 88888888886
Q ss_pred hhhhHHhhhcc
Q 018726 118 KRREELKAIDD 128 (351)
Q Consensus 118 ~~~~~l~~~~~ 128 (351)
...+.+...++
T Consensus 135 ~~~~~l~~~i~ 145 (150)
T KOG0910|consen 135 VPKEQLRSLIK 145 (150)
T ss_pred CCHHHHHHHHH
Confidence 66666655554
No 85
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.38 E-value=3.3e-12 Score=97.29 Aligned_cols=68 Identities=22% Similarity=0.416 Sum_probs=58.3
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
+|+ ++|.|||+||++|+.+.|.++++++.++. .++.+..|+++.. ..++++|+
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~~~~-----------------------~~~~~~~~ 68 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDD---LGINVAKVDVTQE-----------------------PGLSGRFF 68 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc---CCeEEEEEEccCC-----------------------HhHHHHcC
Confidence 455 68999999999999999999999987753 5688888887754 57889999
Q ss_pred cCceeeEEEECCCCce
Q 018726 242 IKGIPALVLIGPDGKT 257 (351)
Q Consensus 242 i~~~P~~~lid~~G~v 257 (351)
|.++||++++ ++|++
T Consensus 69 i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 69 VTALPTIYHA-KDGVF 83 (101)
T ss_pred CcccCEEEEe-CCCCE
Confidence 9999999998 88875
No 86
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.38 E-value=2.7e-12 Score=99.65 Aligned_cols=95 Identities=22% Similarity=0.463 Sum_probs=65.6
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
+||+++++||++||++|+.+.+.+.+..+--.. ...++.++.++++.+...........+. +.......++.+.||
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARY-LKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYG 79 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCE-EHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcC
Confidence 589999999999999999999988865442221 1256889999988765443333332221 222223568999999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
|.++||++++|++|+++.+
T Consensus 80 v~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp --SSSEEEECTTTSCEEEE
T ss_pred CCccCEEEEEcCCCCEEEE
Confidence 9999999999999998876
No 87
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.37 E-value=4.3e-13 Score=102.90 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=57.0
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK 118 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~ 118 (351)
.+++++|+|||+||+||+.|.|.+.++++++++. +.++.|++|... .+.+.+++...|++.+ +|+...+..|..
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~~-~la~~~~V~~iPTf~~fk~G~~v~~~~G~~ 88 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEVP-DFNKMYELYDPPTVMFFFRNKHMKIDLGTG 88 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCCH-HHHHHcCCCCCCEEEEEECCEEEEEEcCCC
Confidence 5789999999999999999999999999998755 455666666544 4666666666677766 887766666543
Q ss_pred h
Q 018726 119 R 119 (351)
Q Consensus 119 ~ 119 (351)
.
T Consensus 89 ~ 89 (114)
T cd02954 89 N 89 (114)
T ss_pred C
Confidence 3
No 88
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.37 E-value=7.6e-12 Score=104.86 Aligned_cols=120 Identities=20% Similarity=0.394 Sum_probs=94.9
Q ss_pred hhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC---HHHH
Q 018726 140 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD---HKEF 214 (351)
Q Consensus 140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~---~~~~ 214 (351)
.....|+|++ +.+|+++++++++||++||+|..+.||. |...+..|.++.+++.+ .+.++++++|++|.. ++..
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~-~~~~v~~v~ISvDP~~DTp~~L 106 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGE-EGKDVQFVFISVDPERDTPEVL 106 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHH-TTTTEEEEEEESSTTTC-HHHH
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhh-ccCceEEEEEEeCCCCCCHHHH
Confidence 3456789999 9999999999999999999999999988 99999999999999986 356899999999963 4566
Q ss_pred HhhhccC--CceeeccCchhhHHHHHHcCcC----------------ceeeEEEECCCCceEec
Q 018726 215 DLNHSIM--PWLAIPYEDRARQDLCRIFNIK----------------GIPALVLIGPDGKTIST 260 (351)
Q Consensus 215 ~~~~~~~--~~~~~~~~~d~~~~~~~~~~i~----------------~~P~~~lid~~G~v~~~ 260 (351)
+++.+.+ .|..+....+....+++.|++. ....++||||+|+++..
T Consensus 107 ~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 107 KKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 6666643 3666666666667888888763 23469999999999875
No 89
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.36 E-value=2.2e-12 Score=115.35 Aligned_cols=89 Identities=22% Similarity=0.355 Sum_probs=70.7
Q ss_pred CcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchh
Q 018726 153 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA 232 (351)
Q Consensus 153 g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~ 232 (351)
++...+++++|+++||+||++||++|+.+.|.|++++++++ +.|++|++|.... ..+|... .
T Consensus 156 ~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg------~~Vi~VsvD~~~~-----------~~fp~~~-~ 217 (271)
T TIGR02740 156 QKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG------IEVLPVSVDGGPL-----------PGFPNAR-P 217 (271)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC------cEEEEEeCCCCcc-----------ccCCccc-C
Confidence 34577888999999999999999999999999999998874 6799999987531 1133332 2
Q ss_pred hHHHHHHcCcCceeeEEEECCCCceEe
Q 018726 233 RQDLCRIFNIKGIPALVLIGPDGKTIS 259 (351)
Q Consensus 233 ~~~~~~~~~i~~~P~~~lid~~G~v~~ 259 (351)
+..++++|||.++|+++|+|++|+.+.
T Consensus 218 d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 218 DAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 356889999999999999999655443
No 90
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.36 E-value=1.3e-12 Score=99.62 Aligned_cols=86 Identities=8% Similarity=0.118 Sum_probs=60.5
Q ss_pred CCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--C
Q 018726 31 RQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--D 107 (351)
Q Consensus 31 ~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~ 107 (351)
.+++ +...-.++++++|.||++||++|+.+.|.+.++++++++. +.+..|++|... .+++.+++..+|++.+ +
T Consensus 6 l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 6 LDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDDR-MLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred cCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCccH-HHHHHcCCCccCEEEEEcC
Confidence 3344 4433346799999999999999999999999999998754 556666665443 4666677777788766 6
Q ss_pred hHHHHHHhhhhhh
Q 018726 108 ETLHKKLRIRKRR 120 (351)
Q Consensus 108 ~~~~~~l~~~~~~ 120 (351)
|....++.|....
T Consensus 82 g~~~~~~~G~~~~ 94 (101)
T cd03003 82 GMNPEKYYGDRSK 94 (101)
T ss_pred CCCcccCCCCCCH
Confidence 6555555543333
No 91
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.36 E-value=4.4e-12 Score=97.14 Aligned_cols=72 Identities=24% Similarity=0.421 Sum_probs=61.4
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
.+++++|.||++||++|+.+.|.+++++++++ ..+.+..|+++.. ..++++|+
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~ 70 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALK----GKVKVGSVDCQKY-----------------------ESLCQQAN 70 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCcEEEEEECCch-----------------------HHHHHHcC
Confidence 36799999999999999999999999999986 5688888888753 68899999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
|.++||++++..+|+.+.+
T Consensus 71 i~~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 71 IRAYPTIRLYPGNASKYHS 89 (104)
T ss_pred CCcccEEEEEcCCCCCceE
Confidence 9999999999655465555
No 92
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.36 E-value=4.1e-12 Score=96.70 Aligned_cols=71 Identities=23% Similarity=0.355 Sum_probs=61.4
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
.+|+|||.|+|+||+||+.+.|.|.+++++++ ..+.|+.|++|.. .++++.|+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~----~~~~f~kVDVDev-----------------------~dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS----KMASIYLVDVDKV-----------------------PVYTQYFD 65 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc----CceEEEEEecccc-----------------------HHHHHhcC
Confidence 57999999999999999999999999999996 3378888888864 78999999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
|.+.||++++ ++|+-+..
T Consensus 66 I~amPtfvff-kngkh~~~ 83 (114)
T cd02986 66 ISYIPSTIFF-FNGQHMKV 83 (114)
T ss_pred ceeCcEEEEE-ECCcEEEE
Confidence 9999999999 66665443
No 93
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.36 E-value=3.5e-12 Score=99.26 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=58.3
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
+++++|.||++||++|+.+.|.|++++++++ ++.++.|+++. . .++++|+|
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-----~v~f~~vd~~~-----------------------~-~l~~~~~i 74 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP-----ETKFVKINAEK-----------------------A-FLVNYLDI 74 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-----CcEEEEEEchh-----------------------h-HHHHhcCC
Confidence 5899999999999999999999999999885 35566655542 4 88999999
Q ss_pred CceeeEEEECCCCceEec
Q 018726 243 KGIPALVLIGPDGKTIST 260 (351)
Q Consensus 243 ~~~P~~~lid~~G~v~~~ 260 (351)
.++||++++ ++|+++.+
T Consensus 75 ~~~Pt~~~f-~~G~~v~~ 91 (113)
T cd02957 75 KVLPTLLVY-KNGELIDN 91 (113)
T ss_pred CcCCEEEEE-ECCEEEEE
Confidence 999999999 88998877
No 94
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.9e-12 Score=109.61 Aligned_cols=76 Identities=24% Similarity=0.528 Sum_probs=61.3
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
.+|.++|+|+|+||+||+...|.+..+..+|+. .|++.+|.++ .+..+..+|
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-------aVFlkVdVd~---------------------c~~taa~~g 71 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-------AVFLKVDVDE---------------------CRGTAATNG 71 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhCcc-------cEEEEEeHHH---------------------hhchhhhcC
Confidence 469999999999999999999999999999964 4444444433 578899999
Q ss_pred cCceeeEEEECCCCceEeccccceeeccCCcC
Q 018726 242 IKGIPALVLIGPDGKTISTNGKEMISLYGAKA 273 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~ 273 (351)
|.++||++++ ++|+-+ .++.|+++
T Consensus 72 V~amPTFiff-~ng~ki-------d~~qGAd~ 95 (288)
T KOG0908|consen 72 VNAMPTFIFF-RNGVKI-------DQIQGADA 95 (288)
T ss_pred cccCceEEEE-ecCeEe-------eeecCCCH
Confidence 9999999999 555544 44788764
No 95
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.35 E-value=1e-11 Score=99.06 Aligned_cols=71 Identities=15% Similarity=0.323 Sum_probs=60.8
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
.+++|||.|||+||+||+.+.|.|.+++++++ +.+.|+.|++|.. .++++.|+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~----~~~~~~kVDVDe~-----------------------~dla~~y~ 74 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIK----NFAVIYLVDITEV-----------------------PDFNTMYE 74 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcC----CceEEEEEECCCC-----------------------HHHHHHcC
Confidence 46899999999999999999999999999986 4577888998864 79999999
Q ss_pred cCceeeEE-EECCCCc-eEec
Q 018726 242 IKGIPALV-LIGPDGK-TIST 260 (351)
Q Consensus 242 i~~~P~~~-lid~~G~-v~~~ 260 (351)
|.+.|+++ ++ ++|+ .+.+
T Consensus 75 I~~~~t~~~ff-k~g~~~vd~ 94 (142)
T PLN00410 75 LYDPCTVMFFF-RNKHIMIDL 94 (142)
T ss_pred ccCCCcEEEEE-ECCeEEEEE
Confidence 99887777 66 7887 5555
No 96
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.35 E-value=9.6e-12 Score=95.28 Aligned_cols=70 Identities=21% Similarity=0.360 Sum_probs=57.2
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
++++++|.||++||++|+.+.|.|++++++++. .+.++.+..++++.. ..++++|+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~~~~~vd~~~~-----------------------~~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKS-SGSPVRVGKLDATAY-----------------------SSIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHh-cCCcEEEEEEECccC-----------------------HhHHhhcC
Confidence 457999999999999999999999999999864 223467777766643 57889999
Q ss_pred cCceeeEEEECCCCc
Q 018726 242 IKGIPALVLIGPDGK 256 (351)
Q Consensus 242 i~~~P~~~lid~~G~ 256 (351)
|.++||++++ .+|.
T Consensus 70 I~~~Pt~~l~-~~~~ 83 (104)
T cd03000 70 VRGYPTIKLL-KGDL 83 (104)
T ss_pred CccccEEEEE-cCCC
Confidence 9999999999 4443
No 97
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.35 E-value=7.2e-13 Score=101.33 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=56.0
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh--hhHHHHHhcCCceeeec--ChHHHHHHh
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGFEEHFKCMPWLAVPF--DETLHKKLR 115 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~--~~~~~~~~~~~~~~~~~--~~~~~~~l~ 115 (351)
..||+|+|+|||+||++|+.++|.+.++++++ .. +.++.|++|.+. ..+.+.+++..+|++.+ +|+...++.
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~---v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~ 88 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-ND---VVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKIHEEE 88 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CC---CEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEEEEEe
Confidence 46999999999999999999999999999998 22 566667766543 24666777777888777 666554544
Q ss_pred h
Q 018726 116 I 116 (351)
Q Consensus 116 ~ 116 (351)
|
T Consensus 89 G 89 (103)
T cd02985 89 G 89 (103)
T ss_pred C
Confidence 4
No 98
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.35 E-value=1.1e-12 Score=106.22 Aligned_cols=93 Identities=15% Similarity=0.279 Sum_probs=69.3
Q ss_pred CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeec---ChHHHHHH
Q 018726 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPF---DETLHKKL 114 (351)
Q Consensus 39 ~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~---~~~~~~~l 114 (351)
...||+++|+|||+||++|+.++|.+.++++++.+. +.++.|++|.+. ....+.+++..+|++.+ +|+...++
T Consensus 17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~ 93 (142)
T cd02950 17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQS 93 (142)
T ss_pred HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEE
Confidence 357999999999999999999999999999998754 678888888754 24556677777777776 46666666
Q ss_pred hhhhhhhHHhhhcccccccc
Q 018726 115 RIRKRREELKAIDDSKRQGG 134 (351)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~~~ 134 (351)
.|....+++...+.....+.
T Consensus 94 ~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 94 IGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred eCCCCHHHHHHHHHHHHcCC
Confidence 66555555655555544443
No 99
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.34 E-value=6.5e-12 Score=97.01 Aligned_cols=69 Identities=26% Similarity=0.549 Sum_probs=60.2
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
.|++++|.||++||++|+.+.|.+.++++.++ ..+.++.|+++.+. ...++++|+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~----~~~~~~~v~~~~~~---------------------~~~~~~~~~ 71 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD----GLVQVAAVDCDEDK---------------------NKPLCGKYG 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc----CCceEEEEecCccc---------------------cHHHHHHcC
Confidence 47889999999999999999999999999886 56888889888632 367899999
Q ss_pred cCceeeEEEECCCC
Q 018726 242 IKGIPALVLIGPDG 255 (351)
Q Consensus 242 i~~~P~~~lid~~G 255 (351)
|.++|+++++++.+
T Consensus 72 i~~~Pt~~~~~~~~ 85 (109)
T cd03002 72 VQGFPTLKVFRPPK 85 (109)
T ss_pred CCcCCEEEEEeCCC
Confidence 99999999997665
No 100
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.34 E-value=1.2e-11 Score=93.50 Aligned_cols=71 Identities=23% Similarity=0.467 Sum_probs=62.3
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
.+++++++||++||++|+.+.|.+.++.+++. +++.++.|+.|.. .++.++|+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~----~~v~~~~id~d~~-----------------------~~l~~~~~ 64 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD----GAVHFVEIDIDED-----------------------QEIAEAAG 64 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC----CceEEEEEECCCC-----------------------HHHHHHCC
Confidence 46899999999999999999999999998886 4678888887754 57889999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
+.++|+++++ ++|+++.+
T Consensus 65 v~~vPt~~i~-~~g~~v~~ 82 (97)
T cd02949 65 IMGTPTVQFF-KDKELVKE 82 (97)
T ss_pred CeeccEEEEE-ECCeEEEE
Confidence 9999999999 58988866
No 101
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.34 E-value=9.2e-12 Score=96.70 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=61.6
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
++++++|.||++||++|+.+.|.|.++.++++ ++.++.|+++.. ..++++|+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-----~i~f~~Vd~~~~-----------------------~~l~~~~~ 72 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-----ETKFIKVNAEKA-----------------------PFLVEKLN 72 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-----CCEEEEEEcccC-----------------------HHHHHHCC
Confidence 35799999999999999999999999998874 367888887764 68999999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
|.++||++++ ++|+++.+
T Consensus 73 v~~vPt~l~f-k~G~~v~~ 90 (113)
T cd02989 73 IKVLPTVILF-KNGKTVDR 90 (113)
T ss_pred CccCCEEEEE-ECCEEEEE
Confidence 9999999999 89988876
No 102
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.33 E-value=6.3e-12 Score=95.80 Aligned_cols=71 Identities=23% Similarity=0.566 Sum_probs=60.0
Q ss_pred EEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCc
Q 018726 165 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG 244 (351)
Q Consensus 165 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 244 (351)
.++|.||++||++|+.+.|.+.+++++++. ....+.++.|+++.. ..++++|++.+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~vd~~~~-----------------------~~~~~~~~v~~ 73 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNN-ENPSVKIAKVDCTQH-----------------------RELCSEFQVRG 73 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhc-cCCcEEEEEEECCCC-----------------------hhhHhhcCCCc
Confidence 499999999999999999999999999973 234688888877753 57889999999
Q ss_pred eeeEEEECCCCceEec
Q 018726 245 IPALVLIGPDGKTIST 260 (351)
Q Consensus 245 ~P~~~lid~~G~v~~~ 260 (351)
+|+++++ ++|+++.+
T Consensus 74 ~Pt~~~~-~~g~~~~~ 88 (102)
T cd03005 74 YPTLLLF-KDGEKVDK 88 (102)
T ss_pred CCEEEEE-eCCCeeeE
Confidence 9999999 78876654
No 103
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.33 E-value=6.3e-12 Score=95.79 Aligned_cols=71 Identities=23% Similarity=0.364 Sum_probs=64.0
Q ss_pred CCcEEEEEEecCC--ChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726 162 AGKTIGLYFGAHW--CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 239 (351)
Q Consensus 162 ~gk~vll~F~a~~--C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 239 (351)
.|.+++|.||++| ||+|+.+.|.|.+++++|. +.+.++.|++|.. ..++.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~----~~v~f~kVdid~~-----------------------~~la~~ 78 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP----GRFRAAVVGRADE-----------------------QALAAR 78 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC----CcEEEEEEECCCC-----------------------HHHHHH
Confidence 5678999999997 9999999999999999997 5577888888875 699999
Q ss_pred cCcCceeeEEEECCCCceEec
Q 018726 240 FNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 240 ~~i~~~P~~~lid~~G~v~~~ 260 (351)
|+|.++||++++ ++|+++.+
T Consensus 79 f~V~sIPTli~f-kdGk~v~~ 98 (111)
T cd02965 79 FGVLRTPALLFF-RDGRYVGV 98 (111)
T ss_pred cCCCcCCEEEEE-ECCEEEEE
Confidence 999999999999 89998877
No 104
>PTZ00062 glutaredoxin; Provisional
Probab=99.33 E-value=1.3e-11 Score=105.07 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=92.8
Q ss_pred CeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhhhh
Q 018726 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRKRR 120 (351)
Q Consensus 43 k~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 120 (351)
..++++|||+||++|+.+.|.+.++++++. ++.|+.+|.+ +.+...|++.| +|+...++.|...
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~------~~~F~~V~~d-------~~V~~vPtfv~~~~g~~i~r~~G~~~- 83 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP------SLEFYVVNLA-------DANNEYGVFEFYQNSQLINSLEGCNT- 83 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC------CcEEEEEccc-------cCcccceEEEEEECCEEEeeeeCCCH-
Confidence 457999999999999999999999999874 2666666655 67777787777 8888888877332
Q ss_pred hHHhhhccccccccchHHhhhccCCCcEecCCCcceeeccc-CCcEEEEEEec----CCChhhHHhHHHHHHHHHHhhcc
Q 018726 121 EELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSEL-AGKTIGLYFGA----HWCPPCRSFTSQLIEVYNELKTT 195 (351)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~l~~~-~gk~vll~F~a----~~C~~C~~~~~~l~~l~~~~~~~ 195 (351)
.++...............+ .-.+.++ ..+.|+|+--+ ++|++|++....|.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~---------------~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------- 141 (204)
T PTZ00062 84 STLVSFIRGWAQKGSSEDT---------------VEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS------- 141 (204)
T ss_pred HHHHHHHHHHcCCCCHHHH---------------HHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-------
Confidence 2332222221111111100 0011111 23455555443 6999999876666532
Q ss_pred cCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726 196 ANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 258 (351)
Q Consensus 196 ~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~ 258 (351)
++.+..++++.+.+. ...+.+.-|...+|.+++ +|+.+
T Consensus 142 ---~i~y~~~DI~~d~~~-------------------~~~l~~~sg~~TvPqVfI---~G~~I 179 (204)
T PTZ00062 142 ---GVKYETYNIFEDPDL-------------------REELKVYSNWPTYPQLYV---NGELI 179 (204)
T ss_pred ---CCCEEEEEcCCCHHH-------------------HHHHHHHhCCCCCCeEEE---CCEEE
Confidence 234445566544211 234555556678888775 35544
No 105
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.33 E-value=1.5e-11 Score=93.70 Aligned_cols=70 Identities=30% Similarity=0.782 Sum_probs=62.1
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
+++++|.||++||++|+.+.|.|.++.+++. .++.++.|+.+.. ..++++|++
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~v 69 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYK----DNVKFAKVDCDEN-----------------------KELCKKYGV 69 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTT----TTSEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred CCCEEEEEeCCCCCccccccceecccccccc----cccccchhhhhcc-----------------------chhhhccCC
Confidence 6899999999999999999999999999987 3788888888754 689999999
Q ss_pred CceeeEEEECCCCceEec
Q 018726 243 KGIPALVLIGPDGKTIST 260 (351)
Q Consensus 243 ~~~P~~~lid~~G~v~~~ 260 (351)
.++|+++++ .+|+.+.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (103)
T PF00085_consen 70 KSVPTIIFF-KNGKEVKR 86 (103)
T ss_dssp SSSSEEEEE-ETTEEEEE
T ss_pred CCCCEEEEE-ECCcEEEE
Confidence 999999999 67777655
No 106
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.32 E-value=7.6e-12 Score=96.71 Aligned_cols=72 Identities=15% Similarity=0.430 Sum_probs=60.5
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH-Hc
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IF 240 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~ 240 (351)
+||+++|.||++||++|+.+.|.+.++++.+++ .++.+..|++|.+ ...+++ .|
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~---~~~~~~~vd~d~~----------------------~~~~~~~~~ 74 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG---SNVKVAKFNADGE----------------------QREFAKEEL 74 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc---CCeEEEEEECCcc----------------------chhhHHhhc
Confidence 578999999999999999999999999999974 5788999988863 245555 59
Q ss_pred CcCceeeEEEECCCCceE
Q 018726 241 NIKGIPALVLIGPDGKTI 258 (351)
Q Consensus 241 ~i~~~P~~~lid~~G~v~ 258 (351)
++.++||+++++++++..
T Consensus 75 ~v~~~Pti~~f~~~~~~~ 92 (109)
T cd02993 75 QLKSFPTILFFPKNSRQP 92 (109)
T ss_pred CCCcCCEEEEEcCCCCCc
Confidence 999999999997766533
No 107
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.32 E-value=2.2e-11 Score=94.75 Aligned_cols=76 Identities=25% Similarity=0.462 Sum_probs=60.4
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
+++++|.||++||++|+.+.|.+.++++++++ ..+.+.+..|+++.+. ...+++.|++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i 76 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRK-WRPVVRVAAVDCADEE---------------------NVALCRDFGV 76 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHh-cCCceEEEEEeccchh---------------------hHHHHHhCCC
Confidence 47999999999999999999999999999864 2234777777765432 4678999999
Q ss_pred CceeeEEEECCCCceEecc
Q 018726 243 KGIPALVLIGPDGKTISTN 261 (351)
Q Consensus 243 ~~~P~~~lid~~G~v~~~~ 261 (351)
.++|+++++ ++|+.....
T Consensus 77 ~~~Pt~~lf-~~~~~~~~~ 94 (114)
T cd02992 77 TGYPTLRYF-PPFSKEATD 94 (114)
T ss_pred CCCCEEEEE-CCCCccCCC
Confidence 999999999 555544443
No 108
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.31 E-value=1.9e-11 Score=92.23 Aligned_cols=70 Identities=20% Similarity=0.453 Sum_probs=60.2
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
+++++|.||++||++|+.+.+.|.++.+++. .++.++.|+.+. ..++.++|++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~----~~i~~~~vd~~~-----------------------~~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF----PSVLFLSIEAEE-----------------------LPEISEKFEI 66 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC----CceEEEEEcccc-----------------------CHHHHHhcCC
Confidence 6899999999999999999999999998863 567777776554 3578999999
Q ss_pred CceeeEEEECCCCceEec
Q 018726 243 KGIPALVLIGPDGKTIST 260 (351)
Q Consensus 243 ~~~P~~~lid~~G~v~~~ 260 (351)
.++||++++ ++|+++.+
T Consensus 67 ~~~Pt~~~~-~~g~~~~~ 83 (97)
T cd02984 67 TAVPTFVFF-RNGTIVDR 83 (97)
T ss_pred ccccEEEEE-ECCEEEEE
Confidence 999999999 68998877
No 109
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.31 E-value=8.4e-12 Score=96.31 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=60.5
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhccc--CCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTA--NHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 239 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 239 (351)
.+++++|.|||+||++|+.+.|.++++++.+++.. ...+.++.|++|.. ..++++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-----------------------~~l~~~ 73 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-----------------------SDIADR 73 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----------------------HHHHHh
Confidence 46899999999999999999999999999886311 12477777877764 689999
Q ss_pred cCcCceeeEEEECCCCceE
Q 018726 240 FNIKGIPALVLIGPDGKTI 258 (351)
Q Consensus 240 ~~i~~~P~~~lid~~G~v~ 258 (351)
|+|.++||++++ ++|++.
T Consensus 74 ~~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 74 YRINKYPTLKLF-RNGMMM 91 (108)
T ss_pred CCCCcCCEEEEE-eCCcCc
Confidence 999999999999 788843
No 110
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.31 E-value=1.5e-11 Score=95.76 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=60.5
Q ss_pred CcEEEEEEecCCChh--hH--HhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726 163 GKTIGLYFGAHWCPP--CR--SFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 238 (351)
Q Consensus 163 gk~vll~F~a~~C~~--C~--~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 238 (351)
..++|++||++||+| |+ .+.|.+.+++.++-+ ..++.|+.|++|.. ..+++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~--~~~v~~~kVD~d~~-----------------------~~La~ 81 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE--DKGIGFGLVDSKKD-----------------------AKVAK 81 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh--cCCCEEEEEeCCCC-----------------------HHHHH
Confidence 358999999999987 99 888999999888721 16689999998864 79999
Q ss_pred HcCcCceeeEEEECCCCceEe
Q 018726 239 IFNIKGIPALVLIGPDGKTIS 259 (351)
Q Consensus 239 ~~~i~~~P~~~lid~~G~v~~ 259 (351)
+|+|.++||++++ ++|+++.
T Consensus 82 ~~~I~~iPTl~lf-k~G~~v~ 101 (120)
T cd03065 82 KLGLDEEDSIYVF-KDDEVIE 101 (120)
T ss_pred HcCCccccEEEEE-ECCEEEE
Confidence 9999999999999 7888764
No 111
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.30 E-value=6.3e-12 Score=107.60 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=61.5
Q ss_pred eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec-------CChhhHHHHHhcC
Q 018726 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEEHFKCM 99 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d-------~~~~~~~~~~~~~ 99 (351)
+.+.+|+ +++++++||+|+|.|||+||++|+..+|.+.++++++++.| ++|++|++| .+.+.+.++.+..
T Consensus 24 l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~e~~~~f~~~~ 101 (199)
T PTZ00056 24 VKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNTKDIRKFNDKN 101 (199)
T ss_pred EECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCHHHHHHHHHHc
Confidence 7899999 99999999999999999999999999999999999998887 899999975 2344566676644
Q ss_pred C
Q 018726 100 P 100 (351)
Q Consensus 100 ~ 100 (351)
+
T Consensus 102 ~ 102 (199)
T PTZ00056 102 K 102 (199)
T ss_pred C
Confidence 3
No 112
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.29 E-value=1.3e-11 Score=96.03 Aligned_cols=69 Identities=23% Similarity=0.415 Sum_probs=55.7
Q ss_pred eeCCCCc-ccccCCC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726 28 LLSRQGK-VPLSSCG-GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (351)
Q Consensus 28 l~~~~g~-~~~~~~~-gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 100 (351)
+.+.+|+ ++++++. ||+++|.||++||++|+.++|.++++++.+.+. +.++.++ +.+.+...++.+.++
T Consensus 5 l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~-~~~~~~~~~~~~~~~ 75 (114)
T cd02967 5 LTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLAS-DGEKAEHQRFLKKHG 75 (114)
T ss_pred eecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEe-CCCHHHHHHHHHHhC
Confidence 6788999 9999986 999999999999999999999999999887543 6777664 555555656655444
No 113
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.29 E-value=2.3e-11 Score=92.54 Aligned_cols=70 Identities=23% Similarity=0.478 Sum_probs=59.8
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
++++++|.||++||++|+.+.+.++++++.++. ..++.++.++++.. ..+.++|+
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~-----------------------~~~~~~~~ 66 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG--DPDIVLAKVDATAE-----------------------KDLASRFG 66 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc--CCceEEEEEEccch-----------------------HHHHHhCC
Confidence 689999999999999999999999999998873 22577777777653 68889999
Q ss_pred cCceeeEEEECCCCc
Q 018726 242 IKGIPALVLIGPDGK 256 (351)
Q Consensus 242 i~~~P~~~lid~~G~ 256 (351)
+.++|+++++++++.
T Consensus 67 i~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 67 VSGFPTIKFFPKGKK 81 (102)
T ss_pred CCcCCEEEEecCCCc
Confidence 999999999977765
No 114
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.29 E-value=4.8e-12 Score=98.13 Aligned_cols=83 Identities=11% Similarity=0.210 Sum_probs=59.4
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR 117 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 117 (351)
..|++++|+|||+||++|+.+.|.+.++++++++.+ +.+..|++|.+. .+.+.+++..+|++.+ +|+...++.|.
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~~-~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~ 98 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHER-RLARKLGAHSVPAIVGIINGQVTFYHDSS 98 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEeccccH-HHHHHcCCccCCEEEEEECCEEEEEecCC
Confidence 478999999999999999999999999999997643 455555555443 4566667777777775 66654444554
Q ss_pred hhhhHHhh
Q 018726 118 KRREELKA 125 (351)
Q Consensus 118 ~~~~~l~~ 125 (351)
...+.+..
T Consensus 99 ~~~~~l~~ 106 (111)
T cd02963 99 FTKQHVVD 106 (111)
T ss_pred CCHHHHHH
Confidence 44444443
No 115
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.28 E-value=1e-11 Score=102.01 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=61.7
Q ss_pred eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHhc
Q 018726 27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFKC 98 (351)
Q Consensus 27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~~ 98 (351)
.|.+.+|+ +++++++||+|+|+|||+||+ |+..+|.++++++++++.| +.++.|++|. +.+.+.++.+.
T Consensus 6 ~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~f~~~ 82 (152)
T cd00340 6 SVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEPGSNEEIKEFCET 82 (152)
T ss_pred EEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCCCCHHHHHHHHHH
Confidence 37889999 999999999999999999999 9999999999999998777 8899998763 23446666643
Q ss_pred ---CCceee
Q 018726 99 ---MPWLAV 104 (351)
Q Consensus 99 ---~~~~~~ 104 (351)
+++|.+
T Consensus 83 ~~~~~fp~~ 91 (152)
T cd00340 83 NYGVTFPMF 91 (152)
T ss_pred hcCCCceee
Confidence 345544
No 116
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.28 E-value=5.1e-12 Score=96.42 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=54.6
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI 116 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 116 (351)
.|++++|+|||+||++|+.+.|.+.++++++++.. +.++.+++| .....+.+++..+|++.+ +|+...++.|
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~--~~~~~vd~d--~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G 89 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDL--LHFATAEAD--TIDTLKRYRGKCEPTFLFYKNGELVAVIRG 89 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCc--EEEEEEeCC--CHHHHHHcCCCcCcEEEEEECCEEEEEEec
Confidence 68999999999999999999999999999987432 455556555 345566677777777776 6665555554
No 117
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.27 E-value=9.6e-12 Score=93.75 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=57.1
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR 117 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 117 (351)
.+|++++|+||++||++|+.+.|.+.++++.+.+. +.++.|+++... .+.+.++...+|++.+ +|+...++.|.
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 85 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQP-QIAQQFGVQALPTVYLFAAGQPVDGFQGA 85 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCCH-HHHHHcCCCCCCEEEEEeCCEEeeeecCC
Confidence 35889999999999999999999999999998653 444455544433 4666677777888876 66555555554
Q ss_pred hhhhHH
Q 018726 118 KRREEL 123 (351)
Q Consensus 118 ~~~~~l 123 (351)
...+++
T Consensus 86 ~~~~~l 91 (96)
T cd02956 86 QPEEQL 91 (96)
T ss_pred CCHHHH
Confidence 333333
No 118
>PTZ00051 thioredoxin; Provisional
Probab=99.27 E-value=2.7e-11 Score=91.62 Aligned_cols=70 Identities=23% Similarity=0.445 Sum_probs=59.7
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
.++.++|+||++||++|+.+.+.+.++++++. ++.++.|+.+. ...++++|+
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-----~~~~~~vd~~~-----------------------~~~~~~~~~ 68 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-----KMVFVKVDVDE-----------------------LSEVAEKEN 68 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-----CcEEEEEECcc-----------------------hHHHHHHCC
Confidence 36899999999999999999999999998764 46677776654 368899999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
+.++|+++++ ++|+++.+
T Consensus 69 v~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 69 ITSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred CceeeEEEEE-eCCeEEEE
Confidence 9999998888 89999877
No 119
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.8e-12 Score=97.59 Aligned_cols=73 Identities=19% Similarity=0.405 Sum_probs=56.3
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR 117 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 117 (351)
..+|.++|+|||+|||||+.+.|.+.+|+.+|.+ +.++.+++|. -..+++.+++...||+.| +|+...++.|.
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde-~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa 93 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE-LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGA 93 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc-CHhHHHhcCceEeeEEEEEECCEEEEEEecC
Confidence 3579999999999999999999999999999875 3566666665 334666666666677776 77777776663
No 120
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.26 E-value=6.2e-11 Score=89.86 Aligned_cols=70 Identities=29% Similarity=0.591 Sum_probs=61.5
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
++.++|.||++||++|+.+.+.+.++.++++ .++.++.|+.+.. ..+.++|++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE----GKVKFVKLNVDEN-----------------------PDIAAKYGI 66 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc----CCeEEEEEECCCC-----------------------HHHHHHcCC
Confidence 5799999999999999999999999998886 5688888888764 578899999
Q ss_pred CceeeEEEECCCCceEec
Q 018726 243 KGIPALVLIGPDGKTIST 260 (351)
Q Consensus 243 ~~~P~~~lid~~G~v~~~ 260 (351)
.++|+++++ ++|+++.+
T Consensus 67 ~~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 67 RSIPTLLLF-KNGKEVDR 83 (101)
T ss_pred CcCCEEEEE-eCCcEeee
Confidence 999999999 78887655
No 121
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.25 E-value=4e-11 Score=103.76 Aligned_cols=70 Identities=29% Similarity=0.470 Sum_probs=59.5
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
+++++|+||++||++|+.+.|.+++++++++ ..+.+..|+++. ...++++|+|
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~----~~v~~~~VD~~~-----------------------~~~l~~~~~I 104 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALK----GQVNVADLDATR-----------------------ALNLAKRFAI 104 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcC----CCeEEEEecCcc-----------------------cHHHHHHcCC
Confidence 5799999999999999999999999999987 456676666654 3688999999
Q ss_pred CceeeEEEECCCCceEec
Q 018726 243 KGIPALVLIGPDGKTIST 260 (351)
Q Consensus 243 ~~~P~~~lid~~G~v~~~ 260 (351)
.++||+++++ +|+++..
T Consensus 105 ~~~PTl~~f~-~G~~v~~ 121 (224)
T PTZ00443 105 KGYPTLLLFD-KGKMYQY 121 (224)
T ss_pred CcCCEEEEEE-CCEEEEe
Confidence 9999999995 7877654
No 122
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.25 E-value=3.1e-11 Score=92.21 Aligned_cols=75 Identities=23% Similarity=0.453 Sum_probs=61.0
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
++++++|.||++||++|+++.|.++++++.++. ...+.++.|+++.+. ...+.++|+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~~---------------------~~~~~~~~~ 72 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE--DGKGVLAAVDCTKPE---------------------HDALKEEYN 72 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh--CCceEEEEEECCCCc---------------------cHHHHHhCC
Confidence 467999999999999999999999999998873 245667777766521 367889999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
+.++|+++++ ++|+++.+
T Consensus 73 i~~~Pt~~~~-~~g~~~~~ 90 (104)
T cd02997 73 VKGFPTFKYF-ENGKFVEK 90 (104)
T ss_pred CccccEEEEE-eCCCeeEE
Confidence 9999999888 68887655
No 123
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.24 E-value=1.4e-11 Score=95.14 Aligned_cols=84 Identities=14% Similarity=0.357 Sum_probs=58.4
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCc-EEEEEEEecCChh-hHHHHHhcCCceeeec--ChH-HHHHH
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTE-LEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DET-LHKKL 114 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~-~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~-~~~~l 114 (351)
..+++++|.|||+||++|+.+.|.+.++++.+++.... -.+.++.+|++.. .+++.+++..+|++.+ +|. ....+
T Consensus 16 ~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~~~~~~~ 95 (108)
T cd02996 16 QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGMMMKREY 95 (108)
T ss_pred hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCcCcceec
Confidence 35789999999999999999999999999988653111 1355555555433 4667778788888876 665 33455
Q ss_pred hhhhhhhHH
Q 018726 115 RIRKRREEL 123 (351)
Q Consensus 115 ~~~~~~~~l 123 (351)
.|....+.+
T Consensus 96 ~g~~~~~~l 104 (108)
T cd02996 96 RGQRSVEAL 104 (108)
T ss_pred CCCCCHHHH
Confidence 554444444
No 124
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.23 E-value=2.3e-10 Score=89.90 Aligned_cols=85 Identities=21% Similarity=0.200 Sum_probs=58.3
Q ss_pred cccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726 159 SELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 235 (351)
Q Consensus 159 ~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 235 (351)
+.-++|+|+|+|+++||++|+.+.+.. .++.+.+. .++.+|.|+.+... +..+.+ ...
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~----~~fv~VkvD~~~~~-~~~~~~--------------~~~ 71 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN----ENFVPIKVDREERP-DVDKIY--------------MNA 71 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh----CCEEEEEEeCCcCc-HHHHHH--------------HHH
Confidence 344689999999999999999997632 24555544 45666666665432 111111 112
Q ss_pred HHHHcCcCceeeEEEECCCCceEeccc
Q 018726 236 LCRIFNIKGIPALVLIGPDGKTISTNG 262 (351)
Q Consensus 236 ~~~~~~i~~~P~~~lid~~G~v~~~~~ 262 (351)
....|++.++|+++++|++|++++..+
T Consensus 72 ~~~~~~~~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 72 AQAMTGQGGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred HHHhcCCCCCCEEEEECCCCCEEeeee
Confidence 333679999999999999999998853
No 125
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.22 E-value=3.5e-11 Score=104.78 Aligned_cols=77 Identities=21% Similarity=0.363 Sum_probs=63.4
Q ss_pred cce-eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHH
Q 018726 25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEH 95 (351)
Q Consensus 25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~ 95 (351)
.++ +.+.+|+ +++++++||+++|.|||+||++|+..+|.+.++++++++.| ++|+.|++|. +.+.+.++
T Consensus 80 PdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s~~ei~~f 157 (236)
T PLN02399 80 HDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKQF 157 (236)
T ss_pred CceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCCHHHHHHH
Confidence 344 7899999 99999999999999999999999999999999999999887 8999999852 33345665
Q ss_pred H-h--cCCcee
Q 018726 96 F-K--CMPWLA 103 (351)
Q Consensus 96 ~-~--~~~~~~ 103 (351)
. + ..++|.
T Consensus 158 ~~~~~g~~fPv 168 (236)
T PLN02399 158 ACTRFKAEFPI 168 (236)
T ss_pred HHHhcCCCCcc
Confidence 4 2 345554
No 126
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.22 E-value=3.4e-11 Score=93.52 Aligned_cols=78 Identities=17% Similarity=0.314 Sum_probs=62.5
Q ss_pred CCcEEEEEEec-------CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhH
Q 018726 162 AGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ 234 (351)
Q Consensus 162 ~gk~vll~F~a-------~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 234 (351)
+|++++|.||| +||++|+.+.|.|.++.++++ .++.++.|++|... ...+...
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~----~~v~fv~Vdvd~~~----------------~w~d~~~ 79 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP----EDCVFIYCDVGDRP----------------YWRDPNN 79 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC----CCCEEEEEEcCCcc----------------cccCcch
Confidence 57899999999 999999999999999999886 46888888887632 1122246
Q ss_pred HHHHHcCcC-ceeeEEEECCCCceEe
Q 018726 235 DLCRIFNIK-GIPALVLIGPDGKTIS 259 (351)
Q Consensus 235 ~~~~~~~i~-~~P~~~lid~~G~v~~ 259 (351)
.++..|+|. ++||++++...++++.
T Consensus 80 ~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 80 PFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred hhHhccCcccCCCEEEEEcCCceecc
Confidence 888999998 9999999955444443
No 127
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.22 E-value=2.7e-11 Score=92.73 Aligned_cols=74 Identities=15% Similarity=0.304 Sum_probs=54.1
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--Ch-HHHHHHhhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DE-TLHKKLRIR 117 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~-~~~~~l~~~ 117 (351)
.+++++|.|||+||++|+.+.|.+.++++++++. +.++.|+++... .+++.+++..+|++.+ +| +...++.|.
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~ 93 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKYE-SLCQQANIRAYPTIRLYPGNASKYHSYNGW 93 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCchH-HHHHHcCCCcccEEEEEcCCCCCceEccCC
Confidence 5779999999999999999999999999998643 455555554433 4666677777788876 44 555555553
Q ss_pred h
Q 018726 118 K 118 (351)
Q Consensus 118 ~ 118 (351)
.
T Consensus 94 ~ 94 (104)
T cd03004 94 H 94 (104)
T ss_pred C
Confidence 3
No 128
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.21 E-value=8.3e-11 Score=98.42 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=58.2
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
+++|||.||++||++|+.+.|.|.+++++|+ .+.++.|+++. . .++..|++
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-----~vkF~kVd~d~-----------------------~-~l~~~f~v 133 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-----AVKFCKIRASA-----------------------T-GASDEFDT 133 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC-----CeEEEEEeccc-----------------------h-hhHHhCCC
Confidence 4599999999999999999999999999885 36666666652 2 68899999
Q ss_pred CceeeEEEECCCCceEec
Q 018726 243 KGIPALVLIGPDGKTIST 260 (351)
Q Consensus 243 ~~~P~~~lid~~G~v~~~ 260 (351)
.++||++++ ++|+++.+
T Consensus 134 ~~vPTllly-k~G~~v~~ 150 (175)
T cd02987 134 DALPALLVY-KGGELIGN 150 (175)
T ss_pred CCCCEEEEE-ECCEEEEE
Confidence 999999999 89998876
No 129
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.21 E-value=4.1e-11 Score=98.48 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=59.1
Q ss_pred eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec-------CChhhHHHHHh
Q 018726 27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEEHFK 97 (351)
Q Consensus 27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d-------~~~~~~~~~~~ 97 (351)
.+.+.+|+ +++++++||+++|.|||+||++|+..+|.+.++++++++.| +.++.|+++ .+.+.+.++.+
T Consensus 6 ~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f~~ 82 (153)
T TIGR02540 6 EVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESFAR 82 (153)
T ss_pred eeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHHHH
Confidence 37889999 99999999999999999999999999999999999999877 889999863 22345666654
No 130
>PLN02412 probable glutathione peroxidase
Probab=99.21 E-value=4.5e-11 Score=99.63 Aligned_cols=57 Identities=21% Similarity=0.379 Sum_probs=54.4
Q ss_pred eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d 86 (351)
|.+.+|+ +++++++||+++|.||++||++|++.+|.+.+++++|++.| ++|+.|+.|
T Consensus 14 l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~ 71 (167)
T PLN02412 14 VKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCN 71 (167)
T ss_pred EECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEeccc
Confidence 7899999 99999999999999999999999999999999999999887 899999986
No 131
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.19 E-value=4.2e-11 Score=92.43 Aligned_cols=63 Identities=19% Similarity=0.379 Sum_probs=51.8
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeec
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPF 106 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~ 106 (351)
.|++++|.|||+||++|+.+.|.+.++++.+++. +.++.+++|.+. ..+.+.++...+|++.+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 5889999999999999999999999999998754 677777777632 34666777777888876
No 132
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.19 E-value=4.6e-11 Score=92.33 Aligned_cols=65 Identities=17% Similarity=0.390 Sum_probs=51.3
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHH-HHHhcCCceeeec
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE-EHFKCMPWLAVPF 106 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~-~~~~~~~~~~~~~ 106 (351)
.+||+++|.||++||++|+++.|.+.++++.+++.+ +.+..|++|.+...++ +.++...+|++.+
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGEQREFAKEELQLKSFPTILF 84 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCccchhhHHhhcCCCcCCEEEE
Confidence 368999999999999999999999999999998544 6676776665333444 4577777888876
No 133
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.18 E-value=6.1e-11 Score=90.33 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=47.2
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc--CCceeeecChH
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC--MPWLAVPFDET 109 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~--~~~~~~~~~~~ 109 (351)
++|+|+|.|+|+||+||+.+.|.+.++++++++. +.+..|++|.-. .+.+.++. +|+..+.++|+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~-dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVP-VYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccH-HHHHhcCceeCcEEEEEECCc
Confidence 6899999999999999999999999999998653 345555555433 36666554 55443333554
No 134
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.18 E-value=1.1e-10 Score=95.05 Aligned_cols=68 Identities=35% Similarity=0.643 Sum_probs=60.2
Q ss_pred eCCCCc-ccccCCCCCeEEEEEeCC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726 29 LSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM 99 (351)
Q Consensus 29 ~~~~g~-~~~~~~~gk~v~v~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 99 (351)
.+.+|+ +++++++||+++|.||++ ||++|+..+|.+.++++.+++++ +++++|+.+.+.. ..++.+..
T Consensus 14 ~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~-~~~~~~~~ 83 (146)
T PF08534_consen 14 LDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPP-VREFLKKY 83 (146)
T ss_dssp EETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHH-HHHHHHHT
T ss_pred ecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHH-HHHHHHhh
Confidence 459999 999999999999999999 99999999999999999998887 8899999988765 56665544
No 135
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.18 E-value=2.7e-10 Score=86.89 Aligned_cols=65 Identities=25% Similarity=0.521 Sum_probs=56.5
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
+++++|.||++||++|+.+.|.+.+++++++ ..+.++.++++.. ..++++|+|
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~----~~~~~~~id~~~~-----------------------~~~~~~~~i 70 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK----GIVKVGAVDADVH-----------------------QSLAQQYGV 70 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCceEEEEECcch-----------------------HHHHHHCCC
Confidence 5679999999999999999999999999886 4678888877753 678899999
Q ss_pred CceeeEEEECCCC
Q 018726 243 KGIPALVLIGPDG 255 (351)
Q Consensus 243 ~~~P~~~lid~~G 255 (351)
.++|++++++ +|
T Consensus 71 ~~~P~~~~~~-~~ 82 (103)
T cd03001 71 RGFPTIKVFG-AG 82 (103)
T ss_pred CccCEEEEEC-CC
Confidence 9999999995 44
No 136
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.18 E-value=5.8e-11 Score=90.93 Aligned_cols=81 Identities=17% Similarity=0.356 Sum_probs=55.4
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeec-ChHHHHHHhhhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPF-DETLHKKLRIRK 118 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 118 (351)
++++++|.|||+||++|+.+.|.+.++++.+++.+. .+.+..+|.+. ..+.+.++...+|++.+ .++...++.|..
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~~~~G~~ 91 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGS--PVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAYNYRGPR 91 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCC--cEEEEEEECccCHhHHhhcCCccccEEEEEcCCCceeecCCC
Confidence 567999999999999999999999999999976543 34444555432 34666677777778776 443333344433
Q ss_pred hhhHH
Q 018726 119 RREEL 123 (351)
Q Consensus 119 ~~~~l 123 (351)
..+.+
T Consensus 92 ~~~~l 96 (104)
T cd03000 92 TKDDI 96 (104)
T ss_pred CHHHH
Confidence 33333
No 137
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.16 E-value=1.3e-10 Score=87.85 Aligned_cols=74 Identities=24% Similarity=0.489 Sum_probs=61.3
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
++++++|.||++||++|+.+.+.+.++++.++ ...++.++.|+.+.. ..+.++|+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~-----------------------~~~~~~~~ 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELK--GDGKVVVAKVDCTAN-----------------------NDLCSEYG 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhc--cCCceEEEEeeccch-----------------------HHHHHhCC
Confidence 45699999999999999999999999999884 126788888877753 68999999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
|.++|++++++++|+.+.+
T Consensus 69 i~~~Pt~~~~~~~~~~~~~ 87 (101)
T cd02961 69 VRGYPTIKLFPNGSKEPVK 87 (101)
T ss_pred CCCCCEEEEEcCCCccccc
Confidence 9999999999877644433
No 138
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.16 E-value=5.1e-11 Score=90.71 Aligned_cols=77 Identities=16% Similarity=0.328 Sum_probs=52.3
Q ss_pred eEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhhhhh
Q 018726 44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRKRRE 121 (351)
Q Consensus 44 ~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 121 (351)
+++|.|||+||++|+.++|.+.++++++++....+.++.++++... ..++.++...+|++.+ +|....++.|....+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~ 96 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-ELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLD 96 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-hhHhhcCCCcCCEEEEEeCCCeeeEeeCCCCHH
Confidence 4999999999999999999999999999763222444444444333 4566666666777776 565444455443333
No 139
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.16 E-value=2.1e-10 Score=87.65 Aligned_cols=72 Identities=18% Similarity=0.412 Sum_probs=60.0
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
+++++|.||++||++|+.+.|.+.++++.++. ..++.++.++.+.. ...++++|++
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~----------------------~~~~~~~~~i 73 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN--EDDVVIAKVDADEA----------------------NKDLAKKYGV 73 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCC--CCCEEEEEEECCCc----------------------chhhHHhCCC
Confidence 57999999999999999999999999999862 25677888877752 1588999999
Q ss_pred CceeeEEEECCCCceE
Q 018726 243 KGIPALVLIGPDGKTI 258 (351)
Q Consensus 243 ~~~P~~~lid~~G~v~ 258 (351)
.++|+++++++.|+..
T Consensus 74 ~~~P~~~~~~~~~~~~ 89 (105)
T cd02998 74 SGFPTLKFFPKGSTEP 89 (105)
T ss_pred CCcCEEEEEeCCCCCc
Confidence 9999999997665443
No 140
>PRK09381 trxA thioredoxin; Provisional
Probab=99.15 E-value=4.1e-11 Score=92.56 Aligned_cols=96 Identities=18% Similarity=0.299 Sum_probs=65.1
Q ss_pred eeeCCCCc-cccc-CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceee
Q 018726 27 FLLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104 (351)
Q Consensus 27 ~l~~~~g~-~~~~-~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~ 104 (351)
.+...+++ +... ...+++++|+||++||++|+.+.|.++++++++.+. +.+..+++|... ...+.++...+|++
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~~-~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-GTAPKYGIRGIPTL 79 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCCh-hHHHhCCCCcCCEE
Confidence 34444444 3322 224789999999999999999999999999998754 667777777654 34555666667777
Q ss_pred ec--ChHHHHHHhhhhhhhHHhhh
Q 018726 105 PF--DETLHKKLRIRKRREELKAI 126 (351)
Q Consensus 105 ~~--~~~~~~~l~~~~~~~~l~~~ 126 (351)
.+ +|....++.|....+++...
T Consensus 80 ~~~~~G~~~~~~~G~~~~~~l~~~ 103 (109)
T PRK09381 80 LLFKNGEVAATKVGALSKGQLKEF 103 (109)
T ss_pred EEEeCCeEEEEecCCCCHHHHHHH
Confidence 76 66655555554444444433
No 141
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.5e-11 Score=104.15 Aligned_cols=87 Identities=20% Similarity=0.323 Sum_probs=68.0
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR 117 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 117 (351)
..-+||+|+||+|||++|+.++|.+++++..|++. +.++.||+|.+. .+...+++..+|++.. +|.....+.|.
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p-~vAaqfgiqsIPtV~af~dGqpVdgF~G~ 116 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEP-MVAAQFGVQSIPTVYAFKDGQPVDGFQGA 116 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcch-hHHHHhCcCcCCeEEEeeCCcCccccCCC
Confidence 35579999999999999999999999999999987 666666666544 4666677666677664 89988888887
Q ss_pred hhhhHHhhhcccc
Q 018726 118 KRREELKAIDDSK 130 (351)
Q Consensus 118 ~~~~~l~~~~~~~ 130 (351)
...+.++.+.+..
T Consensus 117 qPesqlr~~ld~~ 129 (304)
T COG3118 117 QPESQLRQFLDKV 129 (304)
T ss_pred CcHHHHHHHHHHh
Confidence 7776776665543
No 142
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.13 E-value=8.2e-11 Score=93.86 Aligned_cols=66 Identities=12% Similarity=0.349 Sum_probs=49.7
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC-Cceee-ec-ChH
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM-PWLAV-PF-DET 109 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~-~~~~~-~~-~~~ 109 (351)
..+++|+|+|||+||+||+.+.|.+.++++++++. +.|+.|++|... .+.+.++.. +-|++ .| +|.
T Consensus 21 ~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~~-dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 21 EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEVP-DFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCCH-HHHHHcCccCCCcEEEEEECCe
Confidence 36889999999999999999999999999998765 455666666444 466666666 33455 44 665
No 143
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.13 E-value=6e-11 Score=92.65 Aligned_cols=79 Identities=18% Similarity=0.418 Sum_probs=56.7
Q ss_pred ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC--ceeeec---ChH
Q 018726 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP--WLAVPF---DET 109 (351)
Q Consensus 35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~--~~~~~~---~~~ 109 (351)
+..+..+||+|+|+|||+||++|+.+.|.+.+........ ..++.+++|.+.+...+.++..+ +|++.| +|+
T Consensus 12 l~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 12 IKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred HHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence 4445568999999999999999999999999987765432 35777888876544444555443 788877 566
Q ss_pred HHHHHhh
Q 018726 110 LHKKLRI 116 (351)
Q Consensus 110 ~~~~l~~ 116 (351)
...++.+
T Consensus 89 ~~~~~~~ 95 (117)
T cd02959 89 VHPEIIN 95 (117)
T ss_pred Cchhhcc
Confidence 6555443
No 144
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.13 E-value=1.7e-10 Score=91.54 Aligned_cols=66 Identities=24% Similarity=0.294 Sum_probs=54.4
Q ss_pred Cc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec-----CChhhHHHHHhcCC
Q 018726 33 GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-----HDENGFEEHFKCMP 100 (351)
Q Consensus 33 g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d-----~~~~~~~~~~~~~~ 100 (351)
|+ +++++++||+++|+||++||++|++.+|.++++++++++.+ +.++.|+.+ .+.+.++++.+...
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~ 84 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYG 84 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcC
Confidence 45 99999999999999999999999999999999999998766 888888763 23445666666443
No 145
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.13 E-value=1e-10 Score=89.07 Aligned_cols=79 Identities=19% Similarity=0.423 Sum_probs=52.8
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR 117 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 117 (351)
.+|+ ++|+|||+||++|+.+.|.+.++++.++..+ +.+..++++.+. .+.+.++...+|++.+ +|. ..++.|.
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~g~-~~~~~G~ 89 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLG--INVAKVDVTQEP-GLSGRFFVTALPTIYHAKDGV-FRRYQGP 89 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCC--eEEEEEEccCCH-hHHHHcCCcccCEEEEeCCCC-EEEecCC
Confidence 3566 6899999999999999999999999875433 455555544333 4556667777777776 554 2344443
Q ss_pred hhhhHH
Q 018726 118 KRREEL 123 (351)
Q Consensus 118 ~~~~~l 123 (351)
...+++
T Consensus 90 ~~~~~l 95 (101)
T cd02994 90 RDKEDL 95 (101)
T ss_pred CCHHHH
Confidence 333333
No 146
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.12 E-value=1e-10 Score=89.35 Aligned_cols=63 Identities=24% Similarity=0.479 Sum_probs=49.2
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~ 106 (351)
.+++++|.||++||++|+.+.|.+.++++.+++. ..+.++.+|++.......+....+|++.+
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~~~id~~~~~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD---DNVVIAKMDATANDVPSEFVVDGFPTILF 79 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC---CCEEEEEEeCcchhhhhhccCCCCCEEEE
Confidence 4689999999999999999999999999998763 23556666665555555556567788876
No 147
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.12 E-value=2.1e-09 Score=92.29 Aligned_cols=115 Identities=20% Similarity=0.447 Sum_probs=92.5
Q ss_pred CcEe-cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH---HHHHhhhc-
Q 018726 146 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH---KEFDLNHS- 219 (351)
Q Consensus 146 df~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~---~~~~~~~~- 219 (351)
+|++ +.+|+++++..++||+++|+|..+.||. |..++..|.++.++..+....++++++|++|.+. +..+++..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 7999 9999999999999999999999999998 9999999999999998335688999999999643 44445544
Q ss_pred cC--CceeeccCchhhHHHHHHcCcCc---------------eeeEEEECCCCceEec
Q 018726 220 IM--PWLAIPYEDRARQDLCRIFNIKG---------------IPALVLIGPDGKTIST 260 (351)
Q Consensus 220 ~~--~~~~~~~~~d~~~~~~~~~~i~~---------------~P~~~lid~~G~v~~~ 260 (351)
.. .|..+....+...++++.|++.. ...++++|++|+++..
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~ 186 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGT 186 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEE
Confidence 11 25555555556778888887752 3458999999999877
No 148
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.12 E-value=1.7e-10 Score=111.03 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=48.4
Q ss_pred eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~ 85 (351)
+.+.+|+ +.++ +||+|+|+|||+||++|+.++|.+.+++++++..+ ++|+.|++
T Consensus 43 l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~ 97 (521)
T PRK14018 43 TADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVAS 97 (521)
T ss_pred eecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEec
Confidence 7899998 8776 89999999999999999999999999999987555 78888875
No 149
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.11 E-value=1.8e-10 Score=88.11 Aligned_cols=82 Identities=17% Similarity=0.320 Sum_probs=58.6
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHhcCCceeeec-C---hH
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFKCMPWLAVPF-D---ET 109 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~~~~~~~~~~-~---~~ 109 (351)
.+||+++|.||++||++|+++.|.+ .++++.+.+ + +.++.|+++.+. ..+.+.++...+|++.+ + |+
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~ 85 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-D--VVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEP 85 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-C--eEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCC
Confidence 4689999999999999999999988 678888765 2 677777776542 34666777777888877 3 44
Q ss_pred HHHHHhhhhhhhHHh
Q 018726 110 LHKKLRIRKRREELK 124 (351)
Q Consensus 110 ~~~~l~~~~~~~~l~ 124 (351)
...++.|....+++.
T Consensus 86 ~~~~~~G~~~~~~l~ 100 (104)
T cd02953 86 EPLRLPGFLTADEFL 100 (104)
T ss_pred CCcccccccCHHHHH
Confidence 445555544444443
No 150
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.11 E-value=7e-11 Score=89.95 Aligned_cols=82 Identities=27% Similarity=0.496 Sum_probs=61.3
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKKLRIR 117 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 117 (351)
++++++|.||++||++|+.+.|.+.++++.+.+. +.++.+|.+.. ...+.++...+|++.+ +|....++.+.
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~-----v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~ 90 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDN-----VKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVKRYNGP 90 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTT-----SEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEEEEESS
T ss_pred cCCCEEEEEeCCCCCccccccceecccccccccc-----cccchhhhhccchhhhccCCCCCCEEEEEECCcEEEEEECC
Confidence 4799999999999999999999999999998862 44555554433 5777788888888887 67666566665
Q ss_pred hhhhHHhhhc
Q 018726 118 KRREELKAID 127 (351)
Q Consensus 118 ~~~~~l~~~~ 127 (351)
...+.+..++
T Consensus 91 ~~~~~l~~~i 100 (103)
T PF00085_consen 91 RNAESLIEFI 100 (103)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4555554443
No 151
>PTZ00062 glutaredoxin; Provisional
Probab=99.11 E-value=2.7e-10 Score=96.96 Aligned_cols=108 Identities=9% Similarity=0.145 Sum_probs=74.3
Q ss_pred cEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcC
Q 018726 164 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 243 (351)
Q Consensus 164 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~ 243 (351)
..+|++|||+||++|+.+.|.+.++.++|++ +.++.+|.+ |+|.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-------~~F~~V~~d-----------------------------~~V~ 61 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-------LEFYVVNLA-----------------------------DANN 61 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-------cEEEEEccc-----------------------------cCcc
Confidence 4679999999999999999999999999863 445555531 8999
Q ss_pred ceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHHhcCcCCC-----ccccCCCcceeeeecCCc---
Q 018726 244 GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPR-----EVKDVKHEHELKLDMAKA--- 315 (351)
Q Consensus 244 ~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~p~-----~~~~~~~~~~l~l~~~~~--- 315 (351)
++|+++++ ++|+++.+ +.|++ ..+|...++......+. .+...+..++..+..-|.
T Consensus 62 ~vPtfv~~-~~g~~i~r-------~~G~~--------~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~ 125 (204)
T PTZ00062 62 EYGVFEFY-QNSQLINS-------LEGCN--------TSTLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTF 125 (204)
T ss_pred cceEEEEE-ECCEEEee-------eeCCC--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCC
Confidence 99999999 89998887 55654 33444444443332221 133344556666654442
Q ss_pred eeeccccC
Q 018726 316 YVCDCCKM 323 (351)
Q Consensus 316 ~~Cd~C~~ 323 (351)
..|..|.+
T Consensus 126 p~C~~C~~ 133 (204)
T PTZ00062 126 PFCRFSNA 133 (204)
T ss_pred CCChhHHH
Confidence 47888875
No 152
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.11 E-value=2.2e-10 Score=96.98 Aligned_cols=57 Identities=28% Similarity=0.443 Sum_probs=51.5
Q ss_pred eeCCCCc-ccccCCCCCeE-EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726 28 LLSRQGK-VPLSSCGGKTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v-~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d 86 (351)
+.+.+|+ +++++++||++ ++.|||+||++|+..+|.+.++++++++.| +.++.|++|
T Consensus 25 l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~ 83 (183)
T PTZ00256 25 AIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCN 83 (183)
T ss_pred eEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecc
Confidence 7889999 99999999965 456699999999999999999999998877 889999875
No 153
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.10 E-value=2.2e-10 Score=91.00 Aligned_cols=75 Identities=27% Similarity=0.440 Sum_probs=59.7
Q ss_pred eeCCCC--c-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC--Cce
Q 018726 28 LLSRQG--K-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM--PWL 102 (351)
Q Consensus 28 l~~~~g--~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~--~~~ 102 (351)
+.+.+| . +++++++||+++|.||++||++|+.++|.+.++++.+ + ++++.|+.+.+.+.+.++.+.. +++
T Consensus 8 ~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~--~~vv~v~~~~~~~~~~~~~~~~~~~~~ 82 (127)
T cd03010 8 LPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---R--VPIYGINYKDNPENALAWLARHGNPYA 82 (127)
T ss_pred cccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---C--cEEEEEECCCCHHHHHHHHHhcCCCCc
Confidence 666777 6 8888899999999999999999999999999998764 2 7899999887777777776654 344
Q ss_pred eeecC
Q 018726 103 AVPFD 107 (351)
Q Consensus 103 ~~~~~ 107 (351)
.+..+
T Consensus 83 ~~~~D 87 (127)
T cd03010 83 AVGFD 87 (127)
T ss_pred eEEEC
Confidence 44443
No 154
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.10 E-value=6e-10 Score=90.20 Aligned_cols=80 Identities=28% Similarity=0.537 Sum_probs=65.1
Q ss_pred eeCCCCc-ccccCCCCCeEEEEEeCCCChh-hhhhhHHHHHHHHHHhhcC-CcEEEEEEEecCC---hhhHHHHHhcC--
Q 018726 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTRG-TELEVIFISFDHD---ENGFEEHFKCM-- 99 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~-C~~~~p~~~~l~~~~~~~~-~~~~iv~i~~d~~---~~~~~~~~~~~-- 99 (351)
+.+.+|+ +++++++||+++|.||++||++ |++.++.+.++++++++.+ .++++++|+.|.. .+.+.++.+..
T Consensus 7 l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~~ 86 (142)
T cd02968 7 LTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFGP 86 (142)
T ss_pred EEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 7889999 9999999999999999999998 9999999999999998764 4589999999853 34566666655
Q ss_pred CceeeecC
Q 018726 100 PWLAVPFD 107 (351)
Q Consensus 100 ~~~~~~~~ 107 (351)
+|+.+...
T Consensus 87 ~~~~l~~~ 94 (142)
T cd02968 87 GWIGLTGT 94 (142)
T ss_pred CcEEEECC
Confidence 45544433
No 155
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.09 E-value=8.8e-10 Score=86.66 Aligned_cols=79 Identities=24% Similarity=0.464 Sum_probs=57.9
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCch-hhHHHHHHc
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR-ARQDLCRIF 240 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~ 240 (351)
.|+.++|+|+++|||+|+.+.|.|.++.++.+ +.|..|++|.+.. ...... .-.++.+.|
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~------~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK------APIYYIDSENNGS-------------FEMSSLNDLTAFRSRF 82 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC------CcEEEEECCCccC-------------cCcccHHHHHHHHHHc
Confidence 36789999999999999999999999988733 4688999885420 000000 123555665
Q ss_pred C----cCceeeEEEECCCCceEec
Q 018726 241 N----IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 241 ~----i~~~P~~~lid~~G~v~~~ 260 (351)
+ +.++||++++ ++|+.+.+
T Consensus 83 ~i~~~i~~~PT~v~~-k~Gk~v~~ 105 (122)
T TIGR01295 83 GIPTSFMGTPTFVHI-TDGKQVSV 105 (122)
T ss_pred CCcccCCCCCEEEEE-eCCeEEEE
Confidence 5 5569999999 89998877
No 156
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.09 E-value=5.7e-10 Score=86.66 Aligned_cols=63 Identities=11% Similarity=0.263 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
++.++|+||++||++|+.+.|.|.++.+++ +.+.+..|+.|.. .+++++|++
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-----~~i~~~~vd~d~~-----------------------~~l~~~~~v 73 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-----DKLKLEIYDFDED-----------------------KEKAEKYGV 73 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-----CceEEEEEeCCcC-----------------------HHHHHHcCC
Confidence 457889999999999999999999998775 3477888888754 688999999
Q ss_pred CceeeEEEECC
Q 018726 243 KGIPALVLIGP 253 (351)
Q Consensus 243 ~~~P~~~lid~ 253 (351)
.++||+++++.
T Consensus 74 ~~vPt~~i~~~ 84 (113)
T cd02975 74 ERVPTTIFLQD 84 (113)
T ss_pred CcCCEEEEEeC
Confidence 99999999953
No 157
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=8.4e-11 Score=111.05 Aligned_cols=111 Identities=18% Similarity=0.295 Sum_probs=78.0
Q ss_pred CCCCccccCC-CceeeecccCcceeeCCCCcccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEE
Q 018726 5 NDQSKFIDSS-DFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83 (351)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i 83 (351)
.+|+...++. ..+.+++++..+.+... ++|-|||.||||||+||+++.|.+++|++.|++. -++++.
T Consensus 355 kSqpiPe~~~~~pVkvvVgknfd~iv~d---------e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~---~~vviA 422 (493)
T KOG0190|consen 355 KSQPIPEDNDRSPVKVVVGKNFDDIVLD---------EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD---ENVVIA 422 (493)
T ss_pred ccCCCCcccccCCeEEEeecCHHHHhhc---------cccceEEEEcCcccchhhhhhhHHHHHHHHhcCC---CCcEEE
Confidence 5666666666 45677776666664444 6889999999999999999999999999999986 368999
Q ss_pred EecCChhhHHH-HHhcCCceeeec--ChH--HHHHHhhhhhhhHHhhhccc
Q 018726 84 SFDHDENGFEE-HFKCMPWLAVPF--DET--LHKKLRIRKRREELKAIDDS 129 (351)
Q Consensus 84 ~~d~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~l~~~~~~~~l~~~~~~ 129 (351)
.+|.+.+.+.. .+.+ +||+.| .|. ....+.+.....++...++.
T Consensus 423 KmDaTaNd~~~~~~~~--fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~ 471 (493)
T KOG0190|consen 423 KMDATANDVPSLKVDG--FPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKK 471 (493)
T ss_pred EeccccccCccccccc--cceEEEecCCCCCCCcccCCCcchHHHHhhhcc
Confidence 99988766544 3555 567777 222 23334445555555554443
No 158
>PRK10996 thioredoxin 2; Provisional
Probab=99.08 E-value=1.8e-10 Score=93.00 Aligned_cols=82 Identities=12% Similarity=0.331 Sum_probs=58.2
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR 117 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 117 (351)
.++|+|+|+||++||++|+.+.|.+.++++++.+. +.++.++++... .+.+.+++..+|++.+ +|+...++.|.
T Consensus 50 ~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-~l~~~~~V~~~Ptlii~~~G~~v~~~~G~ 125 (139)
T PRK10996 50 QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAER-ELSARFRIRSIPTIMIFKNGQVVDMLNGA 125 (139)
T ss_pred hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCCH-HHHHhcCCCccCEEEEEECCEEEEEEcCC
Confidence 36899999999999999999999999999987654 445445444333 4666677777788776 66655555554
Q ss_pred hhhhHHhh
Q 018726 118 KRREELKA 125 (351)
Q Consensus 118 ~~~~~l~~ 125 (351)
...+.+..
T Consensus 126 ~~~e~l~~ 133 (139)
T PRK10996 126 VPKAPFDS 133 (139)
T ss_pred CCHHHHHH
Confidence 44344433
No 159
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.08 E-value=1.3e-10 Score=94.45 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=54.1
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC------ceeeec--ChHHH
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP------WLAVPF--DETLH 111 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~------~~~~~~--~~~~~ 111 (351)
..+++++|+|||+||++|+.+.|.++++++++.+.+ +.++.|++|... ...+.+++.. +||+.+ +|+..
T Consensus 45 ~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~--v~f~~VDvd~~~-~la~~~~V~~~~~v~~~PT~ilf~~Gk~v 121 (152)
T cd02962 45 DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN--LKFGKIDIGRFP-NVAEKFRVSTSPLSKQLPTIILFQGGKEV 121 (152)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--eEEEEEECCCCH-HHHHHcCceecCCcCCCCEEEEEECCEEE
Confidence 357899999999999999999999999999986543 566666666554 3455555543 566665 77665
Q ss_pred HHHhh
Q 018726 112 KKLRI 116 (351)
Q Consensus 112 ~~l~~ 116 (351)
.++.+
T Consensus 122 ~r~~G 126 (152)
T cd02962 122 ARRPY 126 (152)
T ss_pred EEEec
Confidence 55554
No 160
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.08 E-value=2.4e-10 Score=99.31 Aligned_cols=70 Identities=13% Similarity=0.260 Sum_probs=55.2
Q ss_pred CCcEEEEEEec---CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726 162 AGKTIGLYFGA---HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 238 (351)
Q Consensus 162 ~gk~vll~F~a---~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 238 (351)
++...++.|++ +||++|+.+.|.++++.+++. ++.+..+++|.+. ...+++
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-----~~~i~~v~vd~~~---------------------~~~l~~ 71 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-----KLKLEIYDFDTPE---------------------DKEEAE 71 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-----CceEEEEecCCcc---------------------cHHHHH
Confidence 44455666777 999999999999999998874 3556666666432 479999
Q ss_pred HcCcCceeeEEEECCCCceE
Q 018726 239 IFNIKGIPALVLIGPDGKTI 258 (351)
Q Consensus 239 ~~~i~~~P~~~lid~~G~v~ 258 (351)
+|+|.++||++++ ++|+.+
T Consensus 72 ~~~V~~~Pt~~~f-~~g~~~ 90 (215)
T TIGR02187 72 KYGVERVPTTIIL-EEGKDG 90 (215)
T ss_pred HcCCCccCEEEEE-eCCeee
Confidence 9999999999999 567665
No 161
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.07 E-value=6.5e-10 Score=94.29 Aligned_cols=66 Identities=14% Similarity=0.242 Sum_probs=55.9
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
+++|||.||++||++|+.+.|.|.+++++|. .+.|+.|+++. ....|++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-----~vkFvkI~ad~--------------------------~~~~~~i 150 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-----DTKFVKIISTQ--------------------------CIPNYPD 150 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-----CCEEEEEEhHH--------------------------hHhhCCC
Confidence 4699999999999999999999999999985 35666665542 2478999
Q ss_pred CceeeEEEECCCCceEec
Q 018726 243 KGIPALVLIGPDGKTIST 260 (351)
Q Consensus 243 ~~~P~~~lid~~G~v~~~ 260 (351)
.++||++++ ++|+++.+
T Consensus 151 ~~lPTlliy-k~G~~v~~ 167 (192)
T cd02988 151 KNLPTILVY-RNGDIVKQ 167 (192)
T ss_pred CCCCEEEEE-ECCEEEEE
Confidence 999999999 89998877
No 162
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.06 E-value=2.3e-10 Score=90.68 Aligned_cols=84 Identities=21% Similarity=0.354 Sum_probs=58.7
Q ss_pred CCC-CeEEEEEeCCCChhhhhhhHHHH---HHHHHHhhcCCcEEEEEEEecCC------------hhhHHHHHhcCCcee
Q 018726 40 CGG-KTICLFFSANWCRPCKTFTPQLV---QLYDTLRTRGTELEVIFISFDHD------------ENGFEEHFKCMPWLA 103 (351)
Q Consensus 40 ~~g-k~v~v~F~a~wC~~C~~~~p~~~---~l~~~~~~~~~~~~iv~i~~d~~------------~~~~~~~~~~~~~~~ 103 (351)
.+| |+++|.||++||++|+.++|.+. ++.+.+++. +.++.+++|.+ ...+...++...+|+
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt 87 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAH---FVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPT 87 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhh---eEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccE
Confidence 478 99999999999999999999885 566666543 67777777754 235666777777888
Q ss_pred eec---C-hHHHHHHhhhhhhhHHhhh
Q 018726 104 VPF---D-ETLHKKLRIRKRREELKAI 126 (351)
Q Consensus 104 ~~~---~-~~~~~~l~~~~~~~~l~~~ 126 (351)
+.+ + |+...++.|....+.+...
T Consensus 88 ~~~~~~~gg~~~~~~~G~~~~~~~~~~ 114 (125)
T cd02951 88 VIFLDPEGGKEIARLPGYLPPDEFLAY 114 (125)
T ss_pred EEEEcCCCCceeEEecCCCCHHHHHHH
Confidence 777 3 4545555554433444333
No 163
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.06 E-value=8.2e-10 Score=92.59 Aligned_cols=72 Identities=28% Similarity=0.593 Sum_probs=63.6
Q ss_pred eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCc
Q 018726 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~ 101 (351)
+.+.+|+ +++++++||+++|.||++||++|+...+.+.++++++++.+ ++++.|+.|.+.+.+.++.+..+.
T Consensus 46 ~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~~~~~~~~ 118 (173)
T PRK03147 46 LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNFVNRYGL 118 (173)
T ss_pred eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHHHHHHhCC
Confidence 7789999 99999999999999999999999999999999999998765 889999999877777777665543
No 164
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.05 E-value=5.4e-10 Score=86.94 Aligned_cols=66 Identities=20% Similarity=0.420 Sum_probs=50.0
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeec
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPF 106 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~ 106 (351)
.+++++|.||++||++|+.+.|.++++++.+++....+.+..++++.+. ..+++.++...+|++.+
T Consensus 18 ~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 18 SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRY 84 (114)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEE
Confidence 3589999999999999999999999999998764322444444444332 34677777778888887
No 165
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.05 E-value=2.8e-09 Score=91.04 Aligned_cols=119 Identities=18% Similarity=0.322 Sum_probs=95.9
Q ss_pred CcEe-cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---CHHHHHhhhcc
Q 018726 146 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKEFDLNHSI 220 (351)
Q Consensus 146 df~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~~ 220 (351)
.|++ +.+|+.++-.++.||++|++|..+.||. |..++..|.++.+++.+..+..+.-++|++|. +.+.++.+++.
T Consensus 121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~e 200 (280)
T KOG2792|consen 121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSE 200 (280)
T ss_pred ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHh
Confidence 5888 9999999999999999999999999998 99999999999999876433444578999997 56788888886
Q ss_pred CC--ceeeccCchhhHHHHHHcCcCc---------------eeeEEEECCCCceEeccccc
Q 018726 221 MP--WLAIPYEDRARQDLCRIFNIKG---------------IPALVLIGPDGKTISTNGKE 264 (351)
Q Consensus 221 ~~--~~~~~~~~d~~~~~~~~~~i~~---------------~P~~~lid~~G~v~~~~~~~ 264 (351)
+. .+.+....+.-+.+++.|.|.- .=.+|||||+|+.+...|++
T Consensus 201 F~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN 261 (280)
T KOG2792|consen 201 FHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRN 261 (280)
T ss_pred cChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhccc
Confidence 55 4555666666778889887732 22589999999999875543
No 166
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.05 E-value=5.3e-10 Score=93.96 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=58.0
Q ss_pred eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHh
Q 018726 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFK 97 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~ 97 (351)
+.+.+|+ +++++++||+++|.|||+||+.|. .+|.|++++++|++.| +.|+.++++. +.+.+.++.+
T Consensus 10 ~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei~~f~~ 84 (183)
T PRK10606 10 VTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEIKTYCR 84 (183)
T ss_pred eECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHHHHHHH
Confidence 7789999 999999999999999999999996 5999999999999887 8999999862 3445666664
No 167
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.04 E-value=1.8e-09 Score=85.20 Aligned_cols=77 Identities=35% Similarity=0.689 Sum_probs=63.5
Q ss_pred cce-eeCCCCc-ccccCCCCCeEEEEEeCC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc--C
Q 018726 25 VEF-LLSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC--M 99 (351)
Q Consensus 25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~--~ 99 (351)
+++ +.+.+|+ +++++++||+++|.||++ ||++|+..++.+.+++++++.++ ++++.|+.|..+ ...++.+. .
T Consensus 6 P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~~-~~~~~~~~~~~ 82 (124)
T PF00578_consen 6 PDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDPE-EIKQFLEEYGL 82 (124)
T ss_dssp GCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSHH-HHHHHHHHHTC
T ss_pred CCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeeccccccc-chhhhhhhhcc
Confidence 344 7899999 999999999999999999 99999999999999999999877 899999997544 44444442 4
Q ss_pred Cceee
Q 018726 100 PWLAV 104 (351)
Q Consensus 100 ~~~~~ 104 (351)
++|.+
T Consensus 83 ~~~~~ 87 (124)
T PF00578_consen 83 PFPVL 87 (124)
T ss_dssp SSEEE
T ss_pred ccccc
Confidence 55444
No 168
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.03 E-value=3.2e-10 Score=86.58 Aligned_cols=76 Identities=16% Similarity=0.395 Sum_probs=53.1
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-hhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPWLAVPF--DETLHKKLRI 116 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 116 (351)
.++++++|.||++||++|+.+.|.+.++++.+.+.+ .+.++.++++.+ ...+.+.++...+|++.+ +|+...++.|
T Consensus 15 ~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g 93 (104)
T cd02997 15 KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKFVEKYEG 93 (104)
T ss_pred hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCeeEEeCC
Confidence 357799999999999999999999999999987532 144444444432 234666677777788766 5543333433
No 169
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.02 E-value=3.1e-09 Score=77.40 Aligned_cols=62 Identities=23% Similarity=0.384 Sum_probs=52.1
Q ss_pred EEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCce
Q 018726 166 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI 245 (351)
Q Consensus 166 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~ 245 (351)
.+..||++||++|+...+.|++++++++ ..+.++.|+.+.+ ..+.++|++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v~~v 54 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG----DAVEVEYINVMEN-----------------------PQKAMEYGIMAV 54 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc----CceEEEEEeCccC-----------------------HHHHHHcCCccC
Confidence 4678999999999999999999999886 4578888887754 567788999999
Q ss_pred eeEEEECCCCce
Q 018726 246 PALVLIGPDGKT 257 (351)
Q Consensus 246 P~~~lid~~G~v 257 (351)
|++++ +|+.
T Consensus 55 Pt~~~---~g~~ 63 (82)
T TIGR00411 55 PAIVI---NGDV 63 (82)
T ss_pred CEEEE---CCEE
Confidence 99886 5654
No 170
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.02 E-value=4.4e-10 Score=85.37 Aligned_cols=83 Identities=17% Similarity=0.382 Sum_probs=59.0
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKKLRIR 117 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 117 (351)
++++++|.||++||++|+.+.|.+.++++.+++.+ .+.++.+|.++. .+.+.++...+|++.+ +++...++.|.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~ 88 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP---DIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKPVDYEGG 88 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC---ceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcceeecCC
Confidence 79999999999999999999999999999987642 355566665544 4666677777888865 44334455554
Q ss_pred hhhhHHhhh
Q 018726 118 KRREELKAI 126 (351)
Q Consensus 118 ~~~~~l~~~ 126 (351)
...+++..+
T Consensus 89 ~~~~~l~~~ 97 (102)
T TIGR01126 89 RDLEAIVEF 97 (102)
T ss_pred CCHHHHHHH
Confidence 444444443
No 171
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.02 E-value=3.3e-10 Score=98.01 Aligned_cols=84 Identities=17% Similarity=0.320 Sum_probs=57.9
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKKLRIR 117 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 117 (351)
.+++++|+|||+||++|+.+.|.++++++++++. +.+ ..+|.++. .+.+.+++..+|++.+ +|.......+.
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~--~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~ 125 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNV--ADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGD 125 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEE--EEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCC
Confidence 4689999999999999999999999999998754 444 44555433 4666777777888876 55443333333
Q ss_pred hhhhHHhhhccc
Q 018726 118 KRREELKAIDDS 129 (351)
Q Consensus 118 ~~~~~l~~~~~~ 129 (351)
...+++..++..
T Consensus 126 ~s~e~L~~fi~~ 137 (224)
T PTZ00443 126 RSTEKLAAFALG 137 (224)
T ss_pred CCHHHHHHHHHH
Confidence 444455444433
No 172
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.01 E-value=2e-09 Score=102.41 Aligned_cols=71 Identities=17% Similarity=0.385 Sum_probs=58.8
Q ss_pred cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726 161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 240 (351)
Q Consensus 161 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 240 (351)
.+++++||+|||+||++|+.+.|.|.+++++++. .++.|+.|++|.+. .....+.|
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~---~~v~~~kVdvD~~~---------------------~~~~~~~~ 424 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG---SGVKVAKFRADGDQ---------------------KEFAKQEL 424 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc---CCcEEEEEECCCCc---------------------cHHHHHHc
Confidence 3678999999999999999999999999999974 46889999988652 12334789
Q ss_pred CcCceeeEEEECCCCc
Q 018726 241 NIKGIPALVLIGPDGK 256 (351)
Q Consensus 241 ~i~~~P~~~lid~~G~ 256 (351)
+|.++||++++ ++|.
T Consensus 425 ~I~~~PTii~F-k~g~ 439 (463)
T TIGR00424 425 QLGSFPTILFF-PKHS 439 (463)
T ss_pred CCCccceEEEE-ECCC
Confidence 99999999999 4443
No 173
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.01 E-value=5.6e-10 Score=84.28 Aligned_cols=79 Identities=25% Similarity=0.440 Sum_probs=56.9
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK 118 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~ 118 (351)
.+|+++|.||++||++|+.+.|.+.++++++.+. +.++.+++|.+. .+.+.++...+|++.+ +|+...++.+..
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~~-~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~ 87 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDEDQ-EIAEAAGIMGTPTVQFFKDKELVKEISGVK 87 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH-HHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence 6899999999999999999999999999998653 555555555433 4556666677777776 666555555544
Q ss_pred hhhHH
Q 018726 119 RREEL 123 (351)
Q Consensus 119 ~~~~l 123 (351)
..+++
T Consensus 88 ~~~~~ 92 (97)
T cd02949 88 MKSEY 92 (97)
T ss_pred cHHHH
Confidence 33333
No 174
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.01 E-value=2.2e-09 Score=81.86 Aligned_cols=67 Identities=21% Similarity=0.468 Sum_probs=54.8
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
++.++|+||++||++|+.+.|.+.++++.++. ..++.+..|+++. ..+...+++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~------------------------~~~~~~~~~ 71 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKG--DDNVVIAKMDATA------------------------NDVPSEFVV 71 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC--CCCEEEEEEeCcc------------------------hhhhhhccC
Confidence 58999999999999999999999999999863 2457777777663 346778899
Q ss_pred CceeeEEEECCCCc
Q 018726 243 KGIPALVLIGPDGK 256 (351)
Q Consensus 243 ~~~P~~~lid~~G~ 256 (351)
.++|+++++. +|+
T Consensus 72 ~~~Pt~~~~~-~~~ 84 (104)
T cd02995 72 DGFPTILFFP-AGD 84 (104)
T ss_pred CCCCEEEEEc-CCC
Confidence 9999999994 444
No 175
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.01 E-value=8.6e-10 Score=93.55 Aligned_cols=74 Identities=27% Similarity=0.457 Sum_probs=55.9
Q ss_pred eeCCC--Cc-ccccCC-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC--Cc
Q 018726 28 LLSRQ--GK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM--PW 101 (351)
Q Consensus 28 l~~~~--g~-~~~~~~-~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~--~~ 101 (351)
+.+.+ |+ ++++.+ +||+++|+|||+||++|++++|.+.++++ .+ ++++.|+.+.+.+...++.+.. ++
T Consensus 50 l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~~~~~~~~~~~~~~~~~~~~ 123 (185)
T PRK15412 50 LESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKAISWLKELGNPY 123 (185)
T ss_pred CccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEECCCCHHHHHHHHHHcCCCC
Confidence 56666 45 665554 79999999999999999999999988764 24 7899999887776666776644 45
Q ss_pred eeeecC
Q 018726 102 LAVPFD 107 (351)
Q Consensus 102 ~~~~~~ 107 (351)
|.+.+|
T Consensus 124 ~~~~~D 129 (185)
T PRK15412 124 ALSLFD 129 (185)
T ss_pred ceEEEc
Confidence 544444
No 176
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.00 E-value=1.5e-09 Score=92.29 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=57.0
Q ss_pred cCcce-eeCCCCc-cccc--CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc
Q 018726 23 EGVEF-LLSRQGK-VPLS--SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC 98 (351)
Q Consensus 23 ~~~~~-l~~~~g~-~~~~--~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~ 98 (351)
..+++ +.+.+|+ ++++ ..+||+++|+||++||++|++++|.+.+++++. + +++++|+.| +.+...++.+.
T Consensus 51 ~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~--~~vv~Is~~-~~~~~~~~~~~ 124 (189)
T TIGR02661 51 AAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---E--TDVVMISDG-TPAEHRRFLKD 124 (189)
T ss_pred cCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---C--CcEEEEeCC-CHHHHHHHHHh
Confidence 34455 8899999 9985 579999999999999999999999999988753 2 568888844 45566666665
Q ss_pred CCc
Q 018726 99 MPW 101 (351)
Q Consensus 99 ~~~ 101 (351)
.++
T Consensus 125 ~~~ 127 (189)
T TIGR02661 125 HEL 127 (189)
T ss_pred cCC
Confidence 553
No 177
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.4e-09 Score=84.02 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=93.9
Q ss_pred hccCCCcEe----cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HH
Q 018726 141 AIEGRDYVL----SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KE 213 (351)
Q Consensus 141 g~~~pdf~~----~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~ 213 (351)
..++|+|.- +..-+.++|++++||+|++.||...-.. |..++-.+...+.+|++ -+.+|+++|+|+.. -+
T Consensus 7 ~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~---~n~eVig~S~DS~fshlA 83 (196)
T KOG0852|consen 7 FKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRK---LNTEVLGISTDSVFSHLA 83 (196)
T ss_pred CCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHh---cCCeEEEEeccchhhhhh
Confidence 445677754 5566889999999999999999655444 99999999999999987 88999999999643 34
Q ss_pred HHhhhccC---CceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726 214 FDLNHSIM---PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 261 (351)
Q Consensus 214 ~~~~~~~~---~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~ 261 (351)
|...-+.. +-..+|...|.+.++++.||+- .+..++|||++|.++...
T Consensus 84 W~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it 140 (196)
T KOG0852|consen 84 WINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQIT 140 (196)
T ss_pred HhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEee
Confidence 55444433 3356899999999999999983 467899999999998753
No 178
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.99 E-value=3e-10 Score=88.29 Aligned_cols=69 Identities=12% Similarity=0.180 Sum_probs=52.4
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI 116 (351)
Q Consensus 42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 116 (351)
+++++|.||++||++|+.+.|.++++++++.+ +. ++.+|.++..+++.++...+|++.+ +|+...++.|
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~--f~~vd~~~~~l~~~~~i~~~Pt~~~f~~G~~v~~~~G 94 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TK--FVKINAEKAFLVNYLDIKVLPTLLVYKNGELIDNIVG 94 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cE--EEEEEchhhHHHHhcCCCcCCEEEEEECCEEEEEEec
Confidence 58999999999999999999999999998753 34 4455544336667777777777776 7766555554
No 179
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.99 E-value=9.5e-10 Score=84.01 Aligned_cols=63 Identities=22% Similarity=0.530 Sum_probs=50.0
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh--hhHHHHHhcCCceeeec
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGFEEHFKCMPWLAVPF 106 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~--~~~~~~~~~~~~~~~~~ 106 (351)
.+|+++|.||++||++|+.+.|.+.++++.++..+ .+.++.+|.+. ..+++.+....+|++.+
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~---~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANED---DVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCC---CEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 57799999999999999999999999999987331 35555566544 35777778888888876
No 180
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.2e-08 Score=80.52 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=86.5
Q ss_pred CCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHHHH
Q 018726 144 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFD 215 (351)
Q Consensus 144 ~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~ 215 (351)
.-||.+ +.+|+++++++++||++||.-.|+.|+.-.+. ..|+.||++|++ .++.|+++.++. +.+++.
T Consensus 5 ~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~---~Gf~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 5 IYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKD---KGFEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred cccceeeccCCCCccHHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhh---CCcEEEeccccccccCCCCCHHHHH
Confidence 347788 99999999999999999999999999998865 479999999987 999999999863 557888
Q ss_pred hhhccCCceeeccCc------h----hhHHHHHHc-------CcCceeeEEEECCCCceEecc
Q 018726 216 LNHSIMPWLAIPYED------R----ARQDLCRIF-------NIKGIPALVLIGPDGKTISTN 261 (351)
Q Consensus 216 ~~~~~~~~~~~~~~~------d----~~~~~~~~~-------~i~~~P~~~lid~~G~v~~~~ 261 (351)
++....--+++|... . .-+.|...- .|..-=+-+|||++|+|+.|.
T Consensus 81 ~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf 143 (162)
T COG0386 81 KFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRF 143 (162)
T ss_pred HHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEee
Confidence 888743335554421 1 122233222 133445789999999999994
No 181
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.98 E-value=6.1e-10 Score=84.93 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=57.9
Q ss_pred CCCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHh
Q 018726 40 CGGKTICLFFSANW--CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLR 115 (351)
Q Consensus 40 ~~gk~v~v~F~a~w--C~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ 115 (351)
..|.+++|.||++| ||+|+.+.|.+.+++++|.+. +.++.+++|.+. .++..+++..+||+.+ +|+...++.
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~~-~la~~f~V~sIPTli~fkdGk~v~~~~ 100 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADEQ-ALAARFGVLRTPALLFFRDGRYVGVLA 100 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCCH-HHHHHcCCCcCCEEEEEECCEEEEEEe
Confidence 46778999999997 999999999999999998765 556666666555 6777778887888877 777665555
Q ss_pred h
Q 018726 116 I 116 (351)
Q Consensus 116 ~ 116 (351)
|
T Consensus 101 G 101 (111)
T cd02965 101 G 101 (111)
T ss_pred C
Confidence 5
No 182
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.98 E-value=4e-09 Score=77.98 Aligned_cols=69 Identities=26% Similarity=0.587 Sum_probs=59.2
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
+++++|.||++||++|+.+.+.++++.+. . .++.++.++.+.. ..+.+.|++
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~----~~~~~~~i~~~~~-----------------------~~~~~~~~v 61 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y----PKVKFVKVDVDEN-----------------------PELAEEYGV 61 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH-C----CCceEEEEECCCC-----------------------hhHHHhcCc
Confidence 37899999999999999999999999887 2 6788888888864 678899999
Q ss_pred CceeeEEEECCCCceEec
Q 018726 243 KGIPALVLIGPDGKTIST 260 (351)
Q Consensus 243 ~~~P~~~lid~~G~v~~~ 260 (351)
.++|+++++ ++|+++..
T Consensus 62 ~~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 62 RSIPTFLFF-KNGKEVDR 78 (93)
T ss_pred ccccEEEEE-ECCEEEEE
Confidence 999999999 56776655
No 183
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.96 E-value=2.1e-09 Score=106.15 Aligned_cols=76 Identities=21% Similarity=0.455 Sum_probs=59.7
Q ss_pred cccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726 159 SELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 235 (351)
Q Consensus 159 ~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 235 (351)
+..+||+|+|+|||+||++|+.+.+.+ .++.++++ ++.++.|+++++. +...+
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----~~~~v~vDvt~~~-------------------~~~~~ 525 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----DTVLLQADVTANN-------------------AEDVA 525 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----CCEEEEEECCCCC-------------------hhhHH
Confidence 334689999999999999999988764 55666653 4667777776431 11468
Q ss_pred HHHHcCcCceeeEEEECCCCceE
Q 018726 236 LCRIFNIKGIPALVLIGPDGKTI 258 (351)
Q Consensus 236 ~~~~~~i~~~P~~~lid~~G~v~ 258 (351)
+.++|++.++|+++++|++|+++
T Consensus 526 l~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 526 LLKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HHHHcCCCCCCEEEEECCCCCCc
Confidence 89999999999999999999985
No 184
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.95 E-value=2.7e-09 Score=82.36 Aligned_cols=72 Identities=32% Similarity=0.561 Sum_probs=62.1
Q ss_pred eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-hhhHHHHHhcCCc
Q 018726 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPW 101 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~ 101 (351)
+.+.+|+ ++++++.||+++|.||++||++|++..+.+.++.+++.+.+ +.++.|++|.+ .+.+.++++..++
T Consensus 4 ~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~~ 77 (116)
T cd02966 4 LPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVKAFLKKYGI 77 (116)
T ss_pred ccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCC--eEEEEEECCCCCHHHHHHHHHHcCC
Confidence 5678888 99999999999999999999999999999999999987444 88999999876 6677777776653
No 185
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.95 E-value=1e-09 Score=104.31 Aligned_cols=65 Identities=17% Similarity=0.362 Sum_probs=53.0
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh-HHHHHhcCCceeeec
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG-FEEHFKCMPWLAVPF 106 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~-~~~~~~~~~~~~~~~ 106 (351)
..+++|+|+|||+||++|+.+.|.|+++++++++.+ +.++.|++|.+... ..+.+++..+|++.+
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQKEFAKQELQLGSFPTILF 434 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence 478999999999999999999999999999997654 67777887766443 345567777777776
No 186
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.94 E-value=1.9e-09 Score=82.08 Aligned_cols=62 Identities=16% Similarity=0.373 Sum_probs=48.4
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~ 106 (351)
.+++++|.||++||++|+.+.|.+.++++++++. +.++.++++... .+.+.++...+|++.+
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~~-~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVHQ-SLAQQYGVRGFPTIKV 78 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcchH-HHHHHCCCCccCEEEE
Confidence 4677999999999999999999999999998754 556666555433 4566677777887766
No 187
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.94 E-value=1.4e-09 Score=114.42 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=47.1
Q ss_pred CCCc-ccc-cCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726 31 RQGK-VPL-SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (351)
Q Consensus 31 ~~g~-~~~-~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~ 85 (351)
.+|+ +++ ++++||+|+|+|||+||++|+.++|.+++++++|++++ +.++.|+.
T Consensus 407 ~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~ 461 (1057)
T PLN02919 407 LNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHS 461 (1057)
T ss_pred cCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEec
Confidence 5677 877 57899999999999999999999999999999998776 88888863
No 188
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.93 E-value=4.8e-09 Score=82.38 Aligned_cols=101 Identities=12% Similarity=0.252 Sum_probs=62.7
Q ss_pred cccCCcEEEEEEecCCChhhHHhHHHHH---HHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726 159 SELAGKTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 235 (351)
Q Consensus 159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~---~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 235 (351)
+.-++|+++|+|++.||++|+.+...+- ++.+..+ .++.+|.+..|... ..
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~----~~Fv~V~l~~d~td----------------------~~ 72 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ----EDFIMLNLVHETTD----------------------KN 72 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH----hCeEEEEEEeccCC----------------------CC
Confidence 3346899999999999999999987642 3333332 34444444444221 00
Q ss_pred HHHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHHh
Q 018726 236 LCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE 291 (351)
Q Consensus 236 ~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 291 (351)
.. ..+ .++||++|+|++|+++.+-- ..++...|-..+..+..|.+..++.
T Consensus 73 ~~-~~g-~~vPtivFld~~g~vi~~i~----Gy~~~~~~~y~~~~~~~~~~~m~~a 122 (130)
T cd02960 73 LS-PDG-QYVPRIMFVDPSLTVRADIT----GRYSNRLYTYEPADIPLLIENMKKA 122 (130)
T ss_pred cC-ccC-cccCeEEEECCCCCCccccc----ccccCccceeCcCcHHHHHHHHHHH
Confidence 00 123 57999999999999987732 2344455555566666666555543
No 189
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.93 E-value=2.2e-09 Score=81.20 Aligned_cols=73 Identities=16% Similarity=0.344 Sum_probs=53.7
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR 117 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 117 (351)
.+++++|.||++||++|+.+.|.+.++++++.+. +.++.++++.+. .+.+.++...+|++.+ +|+....+.|.
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 87 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDENP-DIAAKYGIRSIPTLLLFKNGKEVDRSVGA 87 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCCH-HHHHHcCCCcCCEEEEEeCCcEeeeecCC
Confidence 4679999999999999999999999999888654 555555555443 4566677777888777 66544444443
No 190
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.6e-10 Score=94.77 Aligned_cols=76 Identities=26% Similarity=0.500 Sum_probs=54.3
Q ss_pred ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh--HHHH-HhcCCceeeecChHHH
Q 018726 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG--FEEH-FKCMPWLAVPFDETLH 111 (351)
Q Consensus 35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~--~~~~-~~~~~~~~~~~~~~~~ 111 (351)
-+++..-+|.|+|+|+|+||+||+++.|.|.+++.+|.+ .||..+|.|+.. .+.+ ++.||+..+..+|...
T Consensus 14 ~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~------aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 14 RELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG------AVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred HhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc------cEEEEEeHHHhhchhhhcCcccCceEEEEecCeEe
Confidence 345556789999999999999999999999999999953 566666666543 3333 5566543333377766
Q ss_pred HHHhh
Q 018726 112 KKLRI 116 (351)
Q Consensus 112 ~~l~~ 116 (351)
..+.|
T Consensus 88 d~~qG 92 (288)
T KOG0908|consen 88 DQIQG 92 (288)
T ss_pred eeecC
Confidence 66655
No 191
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.92 E-value=3.3e-09 Score=86.02 Aligned_cols=68 Identities=19% Similarity=0.126 Sum_probs=56.4
Q ss_pred eeCCCCc-ccccCCCCCeEEEEEeCCC-ChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726 28 LLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v~v~F~a~w-C~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 100 (351)
+.+.+|+ ++++++.||+++|.||++| |++|+..+|.+.+++++++ + +.++.|++|... ...++.+..+
T Consensus 11 l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~--~~vi~Is~d~~~-~~~~~~~~~~ 80 (143)
T cd03014 11 LVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N--TVVLTISADLPF-AQKRWCGAEG 80 (143)
T ss_pred EECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C--CEEEEEECCCHH-HHHHHHHhcC
Confidence 7888999 9999999999999999999 6999999999999999974 3 789999987633 3455555444
No 192
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.92 E-value=3.3e-09 Score=88.67 Aligned_cols=92 Identities=18% Similarity=0.113 Sum_probs=61.1
Q ss_pred ccCCCceeeecccCcceeeCCCCc----ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEE------
Q 018726 11 IDSSDFLTVLASEGVEFLLSRQGK----VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEV------ 80 (351)
Q Consensus 11 ~~~~~~~~~~~~~~~~~l~~~~g~----~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i------ 80 (351)
.-+++...+-.+...+-+++.++- ++.+++.||+++|+|||+||++|+..+|.+.++.+ .| +.+
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~~--~~~~~y~~t 97 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----AK--FPPVKYQTT 97 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----cC--CCcccccce
Confidence 344445455455555554444332 56667899999999999999999999999999843 23 566
Q ss_pred EEEEecCChhhHHHHHh--------cCCceeeecCh
Q 018726 81 IFISFDHDENGFEEHFK--------CMPWLAVPFDE 108 (351)
Q Consensus 81 v~i~~d~~~~~~~~~~~--------~~~~~~~~~~~ 108 (351)
+.|+.|++......+++ .+||..+.+|.
T Consensus 98 ~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 98 TIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred EEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 89998876544333332 44555555543
No 193
>PLN02309 5'-adenylylsulfate reductase
Probab=98.92 E-value=8.7e-09 Score=98.03 Aligned_cols=66 Identities=18% Similarity=0.428 Sum_probs=57.1
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH-Hc
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IF 240 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~ 240 (351)
+++++||+||++||++|+.+.|.+.++++++.. .++.|+.|++|.. ...++. .|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~---~~V~f~kVD~d~~----------------------~~~la~~~~ 418 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG---SGVKVAKFRADGD----------------------QKEFAKQEL 418 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCc----------------------chHHHHhhC
Confidence 578999999999999999999999999999974 5789999988833 245665 69
Q ss_pred CcCceeeEEEEC
Q 018726 241 NIKGIPALVLIG 252 (351)
Q Consensus 241 ~i~~~P~~~lid 252 (351)
+|.++||++++.
T Consensus 419 ~I~~~PTil~f~ 430 (457)
T PLN02309 419 QLGSFPTILLFP 430 (457)
T ss_pred CCceeeEEEEEe
Confidence 999999999994
No 194
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.92 E-value=4.5e-09 Score=88.03 Aligned_cols=73 Identities=22% Similarity=0.375 Sum_probs=62.3
Q ss_pred eeCCCCc-ccccCC-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHhc
Q 018726 28 LLSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFKC 98 (351)
Q Consensus 28 l~~~~g~-~~~~~~-~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~~ 98 (351)
+.+.+|+ ++++++ .||+++|+||++||+.|...++.+.++++++.+.+ +.++.|++|. +.+.+.++.+.
T Consensus 9 l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~~~~~d~~~~~~~~~~~ 86 (171)
T cd02969 9 LPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIEAYPEDSPENMKAKAKE 86 (171)
T ss_pred ccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccccccccCHHHHHHHHHH
Confidence 7788899 999998 99999999999999999999999999999998665 8899999985 34457777765
Q ss_pred CCce
Q 018726 99 MPWL 102 (351)
Q Consensus 99 ~~~~ 102 (351)
.+++
T Consensus 87 ~~~~ 90 (171)
T cd02969 87 HGYP 90 (171)
T ss_pred CCCC
Confidence 5543
No 195
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.91 E-value=4.1e-09 Score=87.87 Aligned_cols=72 Identities=21% Similarity=0.164 Sum_probs=59.3
Q ss_pred cce-eeCCCCc-ccccCCCCCeEEEEEeCCC-ChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCc
Q 018726 25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (351)
Q Consensus 25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~w-C~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~ 101 (351)
+++ +.+.+|+ +++++++||+++|.||++| |++|...+|.+.++++++. + ++++.|+.|.. ....++.+..+.
T Consensus 25 P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D~~-~~~~~f~~~~~~ 99 (167)
T PRK00522 25 PDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISADLP-FAQKRFCGAEGL 99 (167)
T ss_pred CCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCCCH-HHHHHHHHhCCC
Confidence 444 7888999 9999999999999999999 9999999999999999983 3 78999998753 345556555554
No 196
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.91 E-value=5.3e-09 Score=84.43 Aligned_cols=71 Identities=24% Similarity=0.325 Sum_probs=59.8
Q ss_pred eeeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726 27 FLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (351)
Q Consensus 27 ~l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 100 (351)
.+.+.+|+ +++++++||+++|.|| ++||+.|...++.+.++++++.+.+ ++++.|+.|.. +.+.++.+..+
T Consensus 7 ~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~~-~~~~~~~~~~~ 79 (140)
T cd03017 7 TLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDSV-ESHAKFAEKYG 79 (140)
T ss_pred cccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCH-HHHHHHHHHhC
Confidence 37888999 9999999999999999 5899999999999999999998776 88999998754 45666655443
No 197
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.90 E-value=1.6e-09 Score=81.61 Aligned_cols=67 Identities=25% Similarity=0.481 Sum_probs=49.8
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHH
Q 018726 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKK 113 (351)
Q Consensus 42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~ 113 (351)
+++++|.||++||++|+.+.|.+.++++++.. .+.++.+|.++. .+.+.++...+|++.+ +|+...+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-----~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 83 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-----SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVDR 83 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-----ceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEEE
Confidence 79999999999999999999999999998732 355566665433 3566667666777776 5554333
No 198
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.90 E-value=1.8e-09 Score=84.20 Aligned_cols=81 Identities=7% Similarity=0.008 Sum_probs=56.8
Q ss_pred CCCeEEEEEeCCCChh--hh--hhhHHHHHHHHHH--hhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHH
Q 018726 41 GGKTICLFFSANWCRP--CK--TFTPQLVQLYDTL--RTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHK 112 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~--C~--~~~p~~~~l~~~~--~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~ 112 (351)
..++++++|||+||++ |+ ++.|.+.+++.++ .+. +.++.|++|.+. .+++.++++.+||+.+ +|+...
T Consensus 26 ~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~---v~~~kVD~d~~~-~La~~~~I~~iPTl~lfk~G~~v~ 101 (120)
T cd03065 26 YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG---IGFGLVDSKKDA-KVAKKLGLDEEDSIYVFKDDEVIE 101 (120)
T ss_pred CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC---CEEEEEeCCCCH-HHHHHcCCccccEEEEEECCEEEE
Confidence 4569999999999987 99 8899999999997 332 455555555443 5777777777788876 777554
Q ss_pred HHhhhhhhhHHhhh
Q 018726 113 KLRIRKRREELKAI 126 (351)
Q Consensus 113 ~l~~~~~~~~l~~~ 126 (351)
+.|....+.+..+
T Consensus 102 -~~G~~~~~~l~~~ 114 (120)
T cd03065 102 -YDGEFAADTLVEF 114 (120)
T ss_pred -eeCCCCHHHHHHH
Confidence 6664444444443
No 199
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.89 E-value=3.3e-09 Score=82.44 Aligned_cols=63 Identities=19% Similarity=0.334 Sum_probs=49.4
Q ss_pred CCCeEEEEEeC-------CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh------hhHHHHHhcC-Cceeeec
Q 018726 41 GGKTICLFFSA-------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE------NGFEEHFKCM-PWLAVPF 106 (351)
Q Consensus 41 ~gk~v~v~F~a-------~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~------~~~~~~~~~~-~~~~~~~ 106 (351)
+|++|+|.||| +||++|+.+.|.+.++++++++. +.++.|++|... ..+...++.. ..|++.+
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 58999999999 99999999999999999998743 567777776432 3466666666 6777776
No 200
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.89 E-value=2.2e-09 Score=84.44 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=52.6
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-------hh---HHHHH----hcCCceeeec
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-------NG---FEEHF----KCMPWLAVPF 106 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-------~~---~~~~~----~~~~~~~~~~ 106 (351)
.|+.++|+|+++|||+|+.+.|.|.+++++.+ ..+.+|++|.+. +. +.+.+ +.+.+|++.+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~-----~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~ 96 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK-----APIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVH 96 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC-----CcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEE
Confidence 67889999999999999999999999999822 469999998543 12 22322 2344788877
Q ss_pred --ChHHHHHHhh
Q 018726 107 --DETLHKKLRI 116 (351)
Q Consensus 107 --~~~~~~~l~~ 116 (351)
+|+...++.|
T Consensus 97 ~k~Gk~v~~~~G 108 (122)
T TIGR01295 97 ITDGKQVSVRCG 108 (122)
T ss_pred EeCCeEEEEEeC
Confidence 7876666555
No 201
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.89 E-value=7.2e-09 Score=86.96 Aligned_cols=60 Identities=25% Similarity=0.316 Sum_probs=52.6
Q ss_pred eeCCCC----c-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726 28 LLSRQG----K-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (351)
Q Consensus 28 l~~~~g----~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~ 89 (351)
+.+.+| + +++++++||+++|.|| ++||++|...+|.+.++++++.+.| ++++.|++|...
T Consensus 10 ~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~ 75 (173)
T cd03015 10 ATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHF 75 (173)
T ss_pred eecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHH
Confidence 455555 6 9999999999999999 8999999999999999999998876 889999988643
No 202
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.89 E-value=1.6e-09 Score=84.13 Aligned_cols=71 Identities=11% Similarity=0.062 Sum_probs=52.4
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI 116 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 116 (351)
++++|+|.||++||++|+.+.|.+.++++++.+ +.++-|+++... .+.+.++...+|++.+ +|+...++.+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~~-~l~~~~~v~~vPt~l~fk~G~~v~~~~g 93 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKAP-FLVEKLNIKVLPTVILFKNGKTVDRIVG 93 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccCH-HHHHHCCCccCCEEEEEECCEEEEEEEC
Confidence 568999999999999999999999999998742 345444444433 3566667777777776 7766555544
No 203
>PTZ00102 disulphide isomerase; Provisional
Probab=98.88 E-value=1.2e-08 Score=99.60 Aligned_cols=84 Identities=14% Similarity=0.310 Sum_probs=64.0
Q ss_pred cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726 150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 229 (351)
Q Consensus 150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 229 (351)
.++...+...--+++.++|.|||+||++|+++.|.+.++++.++. ...++.+..|+++..
T Consensus 36 ~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~-~~~~i~~~~vd~~~~------------------- 95 (477)
T PTZ00102 36 VLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKE-KKSEIVLASVDATEE------------------- 95 (477)
T ss_pred EcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHh-cCCcEEEEEEECCCC-------------------
Confidence 444444443333578999999999999999999999999988864 234577777766653
Q ss_pred chhhHHHHHHcCcCceeeEEEECCCCce
Q 018726 230 DRARQDLCRIFNIKGIPALVLIGPDGKT 257 (351)
Q Consensus 230 ~d~~~~~~~~~~i~~~P~~~lid~~G~v 257 (351)
..++++|+|.++||++++...+.+
T Consensus 96 ----~~l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 96 ----MELAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred ----HHHHHhcCCCcccEEEEEECCceE
Confidence 689999999999999999544333
No 204
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.88 E-value=9.5e-09 Score=99.70 Aligned_cols=71 Identities=23% Similarity=0.507 Sum_probs=60.0
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
++++++|.|||+||++|+.+.|.+.++++.+.. .+.++.++.|+++.. ..++++|+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~-~~~~v~~~~vd~~~~-----------------------~~l~~~~~ 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKK-KGPPIKLAKVDATEE-----------------------KDLAQKYG 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhh-cCCceEEEEEECCCc-----------------------HHHHHhCC
Confidence 478999999999999999999999999998875 234577887777753 68999999
Q ss_pred cCceeeEEEECCCCce
Q 018726 242 IKGIPALVLIGPDGKT 257 (351)
Q Consensus 242 i~~~P~~~lid~~G~v 257 (351)
|.++||++++ ++|+.
T Consensus 73 i~~~Pt~~~~-~~g~~ 87 (462)
T TIGR01130 73 VSGYPTLKIF-RNGED 87 (462)
T ss_pred CccccEEEEE-eCCcc
Confidence 9999999999 56664
No 205
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.87 E-value=8.3e-09 Score=84.82 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=59.3
Q ss_pred eeCCCCc-ccccCCCCCeEEEEEeCC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726 28 LLSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v~v~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 100 (351)
+.+.+|+ +++++++||+++|.||++ ||+.|+..++.+.+++++++++| ++++.|+.|. .+.+.++.+..+
T Consensus 15 l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~-~~~~~~~~~~~~ 86 (154)
T PRK09437 15 LPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDK-PEKLSRFAEKEL 86 (154)
T ss_pred eeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHHHHhC
Confidence 7889999 999999999999999986 67789999999999999998877 8899999884 345666655443
No 206
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.87 E-value=1.9e-09 Score=90.28 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI 116 (351)
Q Consensus 42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 116 (351)
+++|+|.||++||++|+.+.|.+.++++++.. +.|+.+|.+...+...+.+...|++.+ +|+...++.+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~------vkF~kVd~d~~~l~~~f~v~~vPTlllyk~G~~v~~~vG 153 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA------VKFCKIRASATGASDEFDTDALPALLVYKGGELIGNFVR 153 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC------eEEEEEeccchhhHHhCCCCCCCEEEEEECCEEEEEEec
Confidence 45999999999999999999999999998742 455666555435566667666777776 7766555544
No 207
>PTZ00051 thioredoxin; Provisional
Probab=98.86 E-value=2.1e-09 Score=81.22 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=50.4
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKKLRI 116 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~ 116 (351)
.+++++|.||++||++|+.+.|.+.++++++.+ +.++.+|.++. .+.+.++...+|++.+ +|+...++.|
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~------~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G 89 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK------MVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVDTLLG 89 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC------cEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEEEEEeC
Confidence 678999999999999999999999999997542 34445554433 4566667667777766 6655444443
No 208
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.86 E-value=1e-08 Score=83.74 Aligned_cols=70 Identities=24% Similarity=0.281 Sum_probs=58.5
Q ss_pred eeCCCCc-ccccCCCC-CeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726 28 LLSRQGK-VPLSSCGG-KTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (351)
Q Consensus 28 l~~~~g~-~~~~~~~g-k~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 100 (351)
+.+.+|+ ++++++.| |+++|.|| ++||+.|+..+|.++++++++++.+ ++++.|+.|.. +...++.+..+
T Consensus 12 l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~~-~~~~~~~~~~~ 84 (149)
T cd03018 12 LPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVDSP-FSLRAWAEENG 84 (149)
T ss_pred ecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCCCH-HHHHHHHHhcC
Confidence 6788899 99999999 99999998 8999999999999999999998766 88999988753 34555555443
No 209
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.85 E-value=6.6e-09 Score=84.79 Aligned_cols=42 Identities=26% Similarity=0.476 Sum_probs=36.4
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC
Q 018726 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (351)
Q Consensus 42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~ 88 (351)
+++.+|+|||+||++|++++|.+++++++++ +.+++|++|..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~ 91 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQ 91 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCC
Confidence 4456999999999999999999999999873 67889999864
No 210
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.84 E-value=9.7e-09 Score=80.95 Aligned_cols=66 Identities=21% Similarity=0.461 Sum_probs=54.1
Q ss_pred eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-hhhHHHHHhcCC
Q 018726 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMP 100 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~ 100 (351)
+.+.+|+ ++++.++||+++|.||++||++|+.++|.+.+++++ ++++.|+.|.+ .+.+.++.+.++
T Consensus 5 l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~ 72 (123)
T cd03011 5 ATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG 72 (123)
T ss_pred eecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC
Confidence 6788899 999999999999999999999999999999999876 35778888754 445666655443
No 211
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.84 E-value=1.1e-08 Score=85.90 Aligned_cols=78 Identities=24% Similarity=0.480 Sum_probs=56.4
Q ss_pred Ccce-eeCCCCc-ccc--cCC-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc
Q 018726 24 GVEF-LLSRQGK-VPL--SSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC 98 (351)
Q Consensus 24 ~~~~-l~~~~g~-~~~--~~~-~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~ 98 (351)
.+++ +.+.+|. .++ +.+ +||+++|+||++||++|+.++|.+.+++++ + ++++.|+.+.+.+...++++.
T Consensus 40 ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~--~~vi~V~~~~~~~~~~~~~~~ 113 (173)
T TIGR00385 40 VPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD----G--LPIVGVDYKDQSQNALKFLKE 113 (173)
T ss_pred CCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc----C--CEEEEEECCCChHHHHHHHHH
Confidence 3444 6777886 444 454 799999999999999999999999887652 3 789999987665555566554
Q ss_pred C--CceeeecC
Q 018726 99 M--PWLAVPFD 107 (351)
Q Consensus 99 ~--~~~~~~~~ 107 (351)
. +++.+.++
T Consensus 114 ~~~~f~~v~~D 124 (173)
T TIGR00385 114 LGNPYQAILID 124 (173)
T ss_pred cCCCCceEEEC
Confidence 4 34444443
No 212
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.83 E-value=7.6e-10 Score=63.90 Aligned_cols=29 Identities=34% Similarity=1.040 Sum_probs=14.3
Q ss_pred eeeccccCCCce-EEEEcCCCCCCCCcccc
Q 018726 316 YVCDCCKMRGRF-WAFSCDVCNYDLHPKCV 344 (351)
Q Consensus 316 ~~Cd~C~~~~~~-~~~~c~~~~~~~~~~c~ 344 (351)
+.|+.|++.+.+ |.|+|.+|+|.||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 479999999888 99999999999999996
No 213
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=8.2e-09 Score=82.16 Aligned_cols=119 Identities=17% Similarity=0.241 Sum_probs=90.5
Q ss_pred ccchHHhhhccCCCcEe-cCCCcceeecccCCc-EEEEEEecCCChh-hHHhHHHHHHHHHHhhcccCCceEEEEEeCCC
Q 018726 133 GGKLEQLLAIEGRDYVL-SRDHRKITVSELAGK-TIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDR 209 (351)
Q Consensus 133 ~~~~~~~~g~~~pdf~~-~~~g~~~~l~~~~gk-~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~ 209 (351)
...++-.+|+.+|||++ +.+|+.++|..+.|+ +||++||..--.| |.+..-.+..-|++++. ...+|++++.|.
T Consensus 58 sds~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk---a~aeV~GlS~D~ 134 (211)
T KOG0855|consen 58 SDSLKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK---AGAEVIGLSGDD 134 (211)
T ss_pred ccceeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhh---cCceEEeeccCc
Confidence 34445567999999999 999999999999885 8888888655444 99999999999999986 788999999985
Q ss_pred CHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee-------eEEEECCCCc
Q 018726 210 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP-------ALVLIGPDGK 256 (351)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P-------~~~lid~~G~ 256 (351)
. ...++|..... +.+....|+.+++...+|+...| ..+++++.|.
T Consensus 135 s-~sqKaF~sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~ 186 (211)
T KOG0855|consen 135 S-ASQKAFASKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV 186 (211)
T ss_pred h-HHHHHhhhhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence 4 34444444322 33444778889999999986544 5788877653
No 214
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.83 E-value=1.1e-08 Score=86.82 Aligned_cols=65 Identities=29% Similarity=0.367 Sum_probs=54.1
Q ss_pred cCcce-eeC-CCCc---ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726 23 EGVEF-LLS-RQGK---VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (351)
Q Consensus 23 ~~~~~-l~~-~~g~---~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~ 89 (351)
..+++ +.+ .+|+ +++++++||+++|.|| ++||+.|...+|.+.++++++.+.| +++++|+.|...
T Consensus 7 ~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~ 77 (187)
T TIGR03137 7 EIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHF 77 (187)
T ss_pred cCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHH
Confidence 34455 555 4564 6677899999999999 9999999999999999999998776 889999998643
No 215
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.83 E-value=2.1e-08 Score=70.04 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=51.2
Q ss_pred EEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCce
Q 018726 166 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI 245 (351)
Q Consensus 166 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~ 245 (351)
-+..|+++||++|+...+.|+++.+.+ +++.+..++++.+ .+++++||+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-----~~i~~~~id~~~~-----------------------~~l~~~~~i~~v 53 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-----PNISAEMIDAAEF-----------------------PDLADEYGVMSV 53 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-----CceEEEEEEcccC-----------------------HhHHHHcCCccc
Confidence 367899999999999999999886653 4577888877754 578899999999
Q ss_pred eeEEEECCCCceEec
Q 018726 246 PALVLIGPDGKTIST 260 (351)
Q Consensus 246 P~~~lid~~G~v~~~ 260 (351)
|++++ +|++++.
T Consensus 54 Pti~i---~~~~~~~ 65 (67)
T cd02973 54 PAIVI---NGKVEFV 65 (67)
T ss_pred CEEEE---CCEEEEe
Confidence 99865 4666654
No 216
>PLN02309 5'-adenylylsulfate reductase
Probab=98.82 E-value=6.5e-09 Score=98.89 Aligned_cols=65 Identities=17% Similarity=0.363 Sum_probs=51.4
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHH-HHHhcCCceeeec
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE-EHFKCMPWLAVPF 106 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~-~~~~~~~~~~~~~ 106 (351)
..+|+++|+|||+||++|+.+.|.+.++++++.+.+ +.+..+++|.+...+. +.+++..+|++.+
T Consensus 363 ~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~~~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 363 NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGDQKEFAKQELQLGSFPTILL 428 (457)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCcchHHHHhhCCCceeeEEEE
Confidence 378999999999999999999999999999997654 5666666663333444 3577778888887
No 217
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.82 E-value=1.7e-08 Score=81.39 Aligned_cols=70 Identities=26% Similarity=0.313 Sum_probs=58.8
Q ss_pred eeeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726 27 FLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM 99 (351)
Q Consensus 27 ~l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 99 (351)
.+.+.+|+ ++++++.||+++|.|| +.||+.|...+|.+.+++++++..+ +.++.|+.|.. ....++.+..
T Consensus 6 ~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d~~-~~~~~~~~~~ 77 (140)
T cd02971 6 TLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVDSP-FSHKAWAEKE 77 (140)
T ss_pred eeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCH-HHHHHHHhcc
Confidence 47788899 9999999999999999 6899999999999999999997665 88999998743 3455555544
No 218
>PHA02125 thioredoxin-like protein
Probab=98.81 E-value=3.6e-08 Score=70.52 Aligned_cols=57 Identities=32% Similarity=0.605 Sum_probs=42.9
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
++.||++||++|+...|.|.++. +.++-|+.+. ..+++++|++.++|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~----------~~~~~vd~~~-----------------------~~~l~~~~~v~~~P 48 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE----------YTYVDVDTDE-----------------------GVELTAKHHIRSLP 48 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh----------heEEeeeCCC-----------------------CHHHHHHcCCceeC
Confidence 68999999999999999886541 2344455443 36899999999999
Q ss_pred eEEEECCCCceEec
Q 018726 247 ALVLIGPDGKTIST 260 (351)
Q Consensus 247 ~~~lid~~G~v~~~ 260 (351)
|++ +|+.+.+
T Consensus 49 T~~----~g~~~~~ 58 (75)
T PHA02125 49 TLV----NTSTLDR 58 (75)
T ss_pred eEE----CCEEEEE
Confidence 986 4665544
No 219
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.80 E-value=3.4e-08 Score=75.23 Aligned_cols=65 Identities=20% Similarity=0.276 Sum_probs=57.1
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
.|+++++.|+++||++|..+.+.+.+++++++ +.+.++.|+.|.. ..+++.||
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~----~~v~f~~vd~~~~-----------------------~~~~~~~~ 63 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFK----GKLLFVVVDADDF-----------------------GRHLEYFG 63 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhC----CeEEEEEEchHhh-----------------------HHHHHHcC
Confidence 37899999999999999999999999999997 5578888777653 57899999
Q ss_pred cC--ceeeEEEECC
Q 018726 242 IK--GIPALVLIGP 253 (351)
Q Consensus 242 i~--~~P~~~lid~ 253 (351)
+. ++|++++++.
T Consensus 64 i~~~~~P~~~~~~~ 77 (103)
T cd02982 64 LKEEDLPVIAIINL 77 (103)
T ss_pred CChhhCCEEEEEec
Confidence 99 9999999965
No 220
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.80 E-value=7.2e-08 Score=75.00 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=57.3
Q ss_pred cccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726 159 SELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 235 (351)
Q Consensus 159 ~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 235 (351)
+.-++|+++|+|+++||++|+.+...+ .++.+.++ .++.++.++++... ...
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~----~~~v~~~~d~~~~e---------------------~~~ 67 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR----ENFIFWQCDIDSSE---------------------GQR 67 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH----hCEEEEEecCCCcc---------------------HHH
Confidence 344589999999999999999987633 34444444 44555555444321 467
Q ss_pred HHHHcCcCceeeEEEECC-CCceEec
Q 018726 236 LCRIFNIKGIPALVLIGP-DGKTIST 260 (351)
Q Consensus 236 ~~~~~~i~~~P~~~lid~-~G~v~~~ 260 (351)
+++.|++.++|+++++|+ +|+++.+
T Consensus 68 ~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 68 FLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HHHHhCccCCCeEEEEeCccCcEeEE
Confidence 899999999999999999 8999887
No 221
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.78 E-value=2.7e-08 Score=71.37 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=47.2
Q ss_pred EEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceee
Q 018726 168 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA 247 (351)
Q Consensus 168 l~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 247 (351)
|.||++||++|+...|.++++.+++. ..+.++-| |. ...+..|++.++|+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~----~~~~~~~v--~~------------------------~~~a~~~~v~~vPt 52 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELG----IDAEFEKV--TD------------------------MNEILEAGVTATPG 52 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcC----CCeEEEEe--CC------------------------HHHHHHcCCCcCCE
Confidence 78999999999999999999999886 44555444 42 12256799999999
Q ss_pred EEEECCCCceEec
Q 018726 248 LVLIGPDGKTIST 260 (351)
Q Consensus 248 ~~lid~~G~v~~~ 260 (351)
+++ +|+++..
T Consensus 53 i~i---~G~~~~~ 62 (76)
T TIGR00412 53 VAV---DGELVIM 62 (76)
T ss_pred EEE---CCEEEEE
Confidence 988 8887733
No 222
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.78 E-value=1.1e-08 Score=85.13 Aligned_cols=56 Identities=23% Similarity=0.435 Sum_probs=47.0
Q ss_pred cceeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (351)
Q Consensus 25 ~~~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~ 89 (351)
+..+...+|+ +++++++ +|.||++||++|++++|.+.+++++++ +.++.|++|.+.
T Consensus 55 ~~~f~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~ 111 (181)
T PRK13728 55 PRWFRLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQG 111 (181)
T ss_pred CCccCCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCC
Confidence 3334456899 9999987 777999999999999999999999973 789999998653
No 223
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.76 E-value=1.3e-08 Score=76.59 Aligned_cols=64 Identities=20% Similarity=0.429 Sum_probs=48.9
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeec
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPF 106 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~ 106 (351)
.++++++|.||++||++|+.+.|.+.++++.++.. -.+.++.+|.+. ..+.+.+....+|++.+
T Consensus 13 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 13 KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD---GKVVVAKVDCTANNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC---CceEEEEeeccchHHHHHhCCCCCCCEEEE
Confidence 35669999999999999999999999999998522 125555555543 35777777788888877
No 224
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.76 E-value=1.3e-08 Score=79.06 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=47.8
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~ 106 (351)
.++.++|.||++||++|+.+.|.+.++++.+ +. +.+..+++|... ...+.++....|++.+
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~~~-~l~~~~~v~~vPt~~i 81 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDEDK-EKAEKYGVERVPTTIF 81 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCcCH-HHHHHcCCCcCCEEEE
Confidence 4567899999999999999999999999875 33 677777777554 4556667666777776
No 225
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.74 E-value=7.4e-09 Score=90.20 Aligned_cols=73 Identities=19% Similarity=0.345 Sum_probs=59.3
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec-ChHHHHHHh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF-DETLHKKLR 115 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~-~~~~~~~l~ 115 (351)
....|+|+||||||+||+++.|.|.++-.++++.| ..|...++|+++- .++..+...+||++.| .|.....+.
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig--~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYR 116 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIG--LPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYR 116 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcC--CceeecccccccchhhHhhhccCCCceEEEecCCeeeecC
Confidence 34689999999999999999999999999999988 5577788888754 4777789999999988 444333333
No 226
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.6e-07 Score=74.06 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=93.2
Q ss_pred HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEec-CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726 138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 215 (351)
Q Consensus 138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 215 (351)
..+|+++|+|++ +.+.+.+++.++.||..++..+. -.-+.|......+++.+.++ .+..|+.||+| -+-+..
T Consensus 18 ~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~-----~~~~Vl~IS~D-LPFAq~ 91 (158)
T COG2077 18 PQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKL-----GNTVVLCISMD-LPFAQK 91 (158)
T ss_pred CccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhcc-----CCcEEEEEeCC-ChhHHh
Confidence 457999999999 89999999999999876666554 45666999999999888877 45889999998 456777
Q ss_pred hhhccCCceeeccCch-hhHHHHHHcCcC--ce-------eeEEEECCCCceEecc
Q 018726 216 LNHSIMPWLAIPYEDR-ARQDLCRIFNIK--GI-------PALVLIGPDGKTISTN 261 (351)
Q Consensus 216 ~~~~~~~~~~~~~~~d-~~~~~~~~~~i~--~~-------P~~~lid~~G~v~~~~ 261 (351)
++....+.-++....| ++..+.+.||+. .. .+++++|.+|+|++..
T Consensus 92 RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~e 147 (158)
T COG2077 92 RFCGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSE 147 (158)
T ss_pred hhhhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEE
Confidence 7777777655544444 677899999962 33 4799999999999883
No 227
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.73 E-value=4.8e-08 Score=72.18 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=59.2
Q ss_pred cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726 159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 238 (351)
Q Consensus 159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 238 (351)
.++.+.+.+..|+++||++|+...+.++++.+++ +++.+..++.+.. .+++.
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-----~~i~~~~vd~~~~-----------------------~e~a~ 59 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLN-----PNIEHEMIDGALF-----------------------QDEVE 59 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-----CCceEEEEEhHhC-----------------------HHHHH
Confidence 4567788999999999999999999999998766 4577777777753 68899
Q ss_pred HcCcCceeeEEEECCCCceEec
Q 018726 239 IFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 239 ~~~i~~~P~~~lid~~G~v~~~ 260 (351)
+|+|.++|++++ +|+++.+
T Consensus 60 ~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 60 ERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred HcCCccCCEEEE---CCEEEEe
Confidence 999999999975 6888775
No 228
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.73 E-value=1.5e-08 Score=90.82 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=55.1
Q ss_pred ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh----------hhHHHHHhcCCceee
Q 018726 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE----------NGFEEHFKCMPWLAV 104 (351)
Q Consensus 35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~----------~~~~~~~~~~~~~~~ 104 (351)
..++++.|++++|+||++||++|+.++|.+.++++++. +.|++|++|.+. ....+.+++..+|++
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl 233 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAV 233 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeE
Confidence 66778899999999999999999999999999999873 679999998742 234555666667777
Q ss_pred ec
Q 018726 105 PF 106 (351)
Q Consensus 105 ~~ 106 (351)
.+
T Consensus 234 ~L 235 (271)
T TIGR02740 234 FL 235 (271)
T ss_pred EE
Confidence 76
No 229
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.8e-08 Score=76.73 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=82.8
Q ss_pred CCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHHHH
Q 018726 144 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFD 215 (351)
Q Consensus 144 ~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~ 215 (351)
.=+|++ +.+|+.++++.++||++|+.--|+.|+.-...-..|+.|+++|++ .+++|++.++.. ...++.
T Consensus 14 iydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~---~Gl~ILaFPCNQFg~QEp~~n~Ei~ 90 (171)
T KOG1651|consen 14 IYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKD---QGLEILAFPCNQFGNQEPGSNEEIL 90 (171)
T ss_pred eeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhh---CCeEEEEeccccccCcCCCCcHHHH
Confidence 347888 999999999999999999999999999988777799999999987 899999999852 335666
Q ss_pred hhhccCCceeecc------CchhhHHHHHHc----------CcCceeeEEEECCCCceEec
Q 018726 216 LNHSIMPWLAIPY------EDRARQDLCRIF----------NIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 216 ~~~~~~~~~~~~~------~~d~~~~~~~~~----------~i~~~P~~~lid~~G~v~~~ 260 (351)
.+.....-..+|+ ..+....+.+.+ .|..-=+-+|+|++|+|+.|
T Consensus 91 ~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~R 151 (171)
T KOG1651|consen 91 NFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKR 151 (171)
T ss_pred HHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEe
Confidence 6665222122222 111111222211 23444578999999999999
No 230
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=2e-08 Score=95.00 Aligned_cols=64 Identities=19% Similarity=0.450 Sum_probs=55.0
Q ss_pred CeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec
Q 018726 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF 106 (351)
Q Consensus 43 k~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~ 106 (351)
|..+|.||++|||+|+++.|.++++++.+.+..+.+.|..|++-.+++ .+++.+++..+|++.|
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlry 122 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRY 122 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeee
Confidence 567999999999999999999999999999887556666666655443 5999999999999999
No 231
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.70 E-value=5.3e-08 Score=79.29 Aligned_cols=69 Identities=22% Similarity=0.337 Sum_probs=53.1
Q ss_pred eeCCCCc-ccccCCC-CCeEEEE-EeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726 28 LLSRQGK-VPLSSCG-GKTICLF-FSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM 99 (351)
Q Consensus 28 l~~~~g~-~~~~~~~-gk~v~v~-F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 99 (351)
+.+.+|+ ++++++. +|+++|. ||++||++|+..+|.+.++++++++.| +.++.|+.|.... ..++.+..
T Consensus 7 l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~~-~~~~~~~~ 78 (149)
T cd02970 7 LPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPEK-LEAFDKGK 78 (149)
T ss_pred ccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHHH-HHHHHHhc
Confidence 7788999 9998864 4555554 569999999999999999999998776 8899999886543 33444433
No 232
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.68 E-value=3.4e-08 Score=71.83 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=47.3
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChH
Q 018726 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDET 109 (351)
Q Consensus 45 v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 109 (351)
.+..||++||++|+.+.|.++++++.++.. +.++.|+++.+.+. .+.++...+|++.++|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~~~~-~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMENPQK-AMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccCHHH-HHHcCCccCCEEEECCE
Confidence 467899999999999999999999988644 66777777655543 44466667788888664
No 233
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.68 E-value=5e-08 Score=85.35 Aligned_cols=88 Identities=19% Similarity=0.332 Sum_probs=67.5
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh-HHHHHh--cCCceeeecChHHHH-HHhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG-FEEHFK--CMPWLAVPFDETLHK-KLRI 116 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~-~~~~~~--~~~~~~~~~~~~~~~-~l~~ 116 (351)
.+..|+|.|||+||+.+++++|.+++.+.+++...+.-.+|..++|++.+. ++..+. .+|+..+.++|.... .+.|
T Consensus 12 s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg 91 (375)
T KOG0912|consen 12 SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRG 91 (375)
T ss_pred cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhcc
Confidence 367999999999999999999999999999988866567999999998664 555555 455545555888665 6667
Q ss_pred hhhhhHHhhhcc
Q 018726 117 RKRREELKAIDD 128 (351)
Q Consensus 117 ~~~~~~l~~~~~ 128 (351)
...++.+...++
T Consensus 92 ~RsVeaL~efi~ 103 (375)
T KOG0912|consen 92 QRSVEALIEFIE 103 (375)
T ss_pred chhHHHHHHHHH
Confidence 666666655544
No 234
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.67 E-value=7.7e-08 Score=74.17 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=46.9
Q ss_pred CCcEEEEEEec--CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726 162 AGKTIGLYFGA--HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 239 (351)
Q Consensus 162 ~gk~vll~F~a--~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 239 (351)
+.+.+||.|+| +||+ + +|...+|+.++.. ....+.|.-|.++.. ....+..++++
T Consensus 17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~-aa~~v~lakVd~~d~------------------~~~~~~~L~~~ 73 (116)
T cd03007 17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSAS-ATDDLLVAEVGIKDY------------------GEKLNMELGER 73 (116)
T ss_pred cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHh-hcCceEEEEEecccc------------------cchhhHHHHHH
Confidence 46789999999 6666 3 3555555555532 123466666766531 00014789999
Q ss_pred cCcC--ceeeEEEECCCCc
Q 018726 240 FNIK--GIPALVLIGPDGK 256 (351)
Q Consensus 240 ~~i~--~~P~~~lid~~G~ 256 (351)
|+|+ ++||+.++ ++|.
T Consensus 74 y~I~~~gyPTl~lF-~~g~ 91 (116)
T cd03007 74 YKLDKESYPVIYLF-HGGD 91 (116)
T ss_pred hCCCcCCCCEEEEE-eCCC
Confidence 9999 99999999 5553
No 235
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.66 E-value=1.6e-08 Score=88.19 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=57.7
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
...++|.|||+||++|++..|.+.++--++++ -+.-|-.-.+|... -..++..|||
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkd---ig~PikVGKlDaT~---------------------f~aiAnefgi 98 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKD---IGLPIKVGKLDATR---------------------FPAIANEFGI 98 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhh---cCCceeeccccccc---------------------chhhHhhhcc
Confidence 35899999999999999999999999888875 44444444455432 3588999999
Q ss_pred CceeeEEEECCCCceEecccc
Q 018726 243 KGIPALVLIGPDGKTISTNGK 263 (351)
Q Consensus 243 ~~~P~~~lid~~G~v~~~~~~ 263 (351)
+++||+.++-.+..+-+|++|
T Consensus 99 qGYPTIk~~kgd~a~dYRG~R 119 (468)
T KOG4277|consen 99 QGYPTIKFFKGDHAIDYRGGR 119 (468)
T ss_pred CCCceEEEecCCeeeecCCCc
Confidence 999999999333344455443
No 236
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.63 E-value=1.9e-07 Score=80.76 Aligned_cols=86 Identities=24% Similarity=0.350 Sum_probs=67.9
Q ss_pred eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHH
Q 018726 157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL 236 (351)
Q Consensus 157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 236 (351)
.+.++++++-|++|+.+.|+.|..+.|.|..+.++|+ +.|+.||+|... ...+|.... +..+
T Consensus 114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg------~~v~~vs~DG~~-----------~~~fp~~~~-~~g~ 175 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG------FSVIPVSLDGRP-----------IPSFPNPRP-DPGQ 175 (215)
T ss_pred HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC------CEEEEEecCCCC-----------CcCCCCCCC-CHHH
Confidence 4556678899999999999999999999999999875 689999999642 112222211 5778
Q ss_pred HHHcCcCceeeEEEECCCCceEec
Q 018726 237 CRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 237 ~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
++++|+..+|+++|+++++.....
T Consensus 176 ~~~l~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 176 AKRLGVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred HHHcCCCcCCEEEEEECCCCeEEE
Confidence 999999999999999998854444
No 237
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=9.5e-08 Score=90.45 Aligned_cols=70 Identities=27% Similarity=0.546 Sum_probs=57.1
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
++.++|.||++||++|++..|.+.++...++ ..+.+..|..+. ...+++.|+|
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~----~~~~~~~vd~~~-----------------------~~~~~~~y~i 99 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALK----GKVKIGAVDCDE-----------------------HKDLCEKYGI 99 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhc----CceEEEEeCchh-----------------------hHHHHHhcCC
Confidence 5799999999999999999999999999887 345555555554 4799999999
Q ss_pred CceeeEEEECCCCceEe
Q 018726 243 KGIPALVLIGPDGKTIS 259 (351)
Q Consensus 243 ~~~P~~~lid~~G~v~~ 259 (351)
.++||+.++.+..+++.
T Consensus 100 ~gfPtl~~f~~~~~~~~ 116 (383)
T KOG0191|consen 100 QGFPTLKVFRPGKKPID 116 (383)
T ss_pred ccCcEEEEEcCCCceee
Confidence 99999999965523443
No 238
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.62 E-value=1.5e-07 Score=82.46 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=62.6
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
...|+|.|+|.||+.++...|.+.+.++.+++ ..++-.+|+-++|.+. ...++.+|.|
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~-e~P~~kvvwg~VDcd~---------------------e~~ia~ky~I 70 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQ-EFPEGKVVWGKVDCDK---------------------EDDIADKYHI 70 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHH-hCCCcceEEEEcccch---------------------hhHHhhhhcc
Confidence 46899999999999999999999999999986 3344566777777654 5789999999
Q ss_pred CceeeEEEECCCCceEec
Q 018726 243 KGIPALVLIGPDGKTIST 260 (351)
Q Consensus 243 ~~~P~~~lid~~G~v~~~ 260 (351)
..+||+-++ .+|.+..+
T Consensus 71 ~KyPTlKvf-rnG~~~~r 87 (375)
T KOG0912|consen 71 NKYPTLKVF-RNGEMMKR 87 (375)
T ss_pred ccCceeeee-eccchhhh
Confidence 999999999 78877665
No 239
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.62 E-value=2.1e-08 Score=85.11 Aligned_cols=68 Identities=7% Similarity=0.102 Sum_probs=49.7
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI 116 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 116 (351)
++++|+|.||++||++|+.+.|.|.+|++++.. +.|+.+|.+.. ...+.....|++.+ +|+...++.|
T Consensus 101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~------vkFvkI~ad~~--~~~~~i~~lPTlliyk~G~~v~~ivG 170 (192)
T cd02988 101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD------TKFVKIISTQC--IPNYPDKNLPTILVYRNGDIVKQFIG 170 (192)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC------CEEEEEEhHHh--HhhCCCCCCCEEEEEECCEEEEEEeC
Confidence 356999999999999999999999999999752 45666665442 34455555566665 8876666655
No 240
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.60 E-value=1.6e-07 Score=81.20 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=60.7
Q ss_pred cccCcce-eeCCCCc-ccccCCCCCeE-EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh--hHHHH
Q 018726 21 ASEGVEF-LLSRQGK-VPLSSCGGKTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEH 95 (351)
Q Consensus 21 ~~~~~~~-l~~~~g~-~~~~~~~gk~v-~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~--~~~~~ 95 (351)
....+++ +.+.+|+ ..++++.||++ |+.||++||+.|...++.+.++++++.+.| ++++.||+|.... .+.++
T Consensus 5 Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~~~ 82 (215)
T PRK13599 5 GEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWVEW 82 (215)
T ss_pred CCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHh
Confidence 3444566 7788999 77788899975 679999999999999999999999998887 8999999997532 35555
Q ss_pred Hh
Q 018726 96 FK 97 (351)
Q Consensus 96 ~~ 97 (351)
++
T Consensus 83 i~ 84 (215)
T PRK13599 83 IK 84 (215)
T ss_pred HH
Confidence 44
No 241
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.60 E-value=1.8e-07 Score=80.31 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=52.8
Q ss_pred cce-eeCCCCcccccCCCCCeEEE-EEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726 25 VEF-LLSRQGKVPLSSCGGKTICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (351)
Q Consensus 25 ~~~-l~~~~g~~~~~~~~gk~v~v-~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~ 89 (351)
+++ +.+..|.+++++++||+++| .||++||+.|...++.+.++++++++.| ++++.|++|...
T Consensus 9 P~F~~~~~~g~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~ 73 (202)
T PRK13190 9 PDFTVNTTKGPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIY 73 (202)
T ss_pred CCcEEecCCCcEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHH
Confidence 344 45555668899999997766 6899999999999999999999999877 889999998653
No 242
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.58 E-value=1.9e-07 Score=78.91 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=48.7
Q ss_pred ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726 35 VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (351)
Q Consensus 35 ~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~ 89 (351)
++++++.||+++|.|| ++||+.|...++.+.++++++.+.| ++++.||.|...
T Consensus 24 v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~~ 77 (187)
T PRK10382 24 VTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTHF 77 (187)
T ss_pred EEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCHH
Confidence 7888999999999999 9999999999999999999998877 889999988643
No 243
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.58 E-value=1.8e-07 Score=73.53 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=44.5
Q ss_pred ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCChhhHHH-------HHhcCCceee
Q 018726 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEE-------HFKCMPWLAV 104 (351)
Q Consensus 35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~-------~~~~~~~~~~ 104 (351)
+..+..+||+|+|+|+|+||++|+.|.+.. .++.+.+++. +.++.++++...+.... .++..++|++
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~---fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN---FVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC---EEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 334456899999999999999999998733 3566665543 44554444432221111 2355678888
Q ss_pred ec
Q 018726 105 PF 106 (351)
Q Consensus 105 ~~ 106 (351)
.+
T Consensus 85 vf 86 (124)
T cd02955 85 VF 86 (124)
T ss_pred EE
Confidence 88
No 244
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.56 E-value=1.1e-07 Score=68.23 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=44.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChHHH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (351)
-|.||++||++|+.+.|.++++++++... +.++++|. .+. ...++.+..|++.++|+..
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-----~~~~~v~~-~~~-a~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-----AEFEKVTD-MNE-ILEAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-----eEEEEeCC-HHH-HHHcCCCcCCEEEECCEEE
Confidence 48899999999999999999999987543 55566663 222 3346777888988877543
No 245
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.56 E-value=3.1e-08 Score=56.97 Aligned_cols=29 Identities=28% Similarity=0.890 Sum_probs=27.1
Q ss_pred eeeccccCCCceE-EEEcCCCCCCCCcccc
Q 018726 316 YVCDCCKMRGRFW-AFSCDVCNYDLHPKCV 344 (351)
Q Consensus 316 ~~Cd~C~~~~~~~-~~~c~~~~~~~~~~c~ 344 (351)
++|+.|.+...|. .|+|++|+|.||+.||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 5799999998888 9999999999999997
No 246
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.55 E-value=1e-07 Score=70.28 Aligned_cols=64 Identities=22% Similarity=0.493 Sum_probs=47.6
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChH
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DET 109 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~ 109 (351)
++++++|.||++||++|+.+.+.+.++++. .. + +.++.++++.+. .+.+.++...+|++.+ +|+
T Consensus 9 ~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~-~--~~~~~i~~~~~~-~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 9 SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP-K--VKFVKVDVDENP-ELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC-C--ceEEEEECCCCh-hHHHhcCcccccEEEEEECCE
Confidence 348999999999999999999999999987 22 2 556666655433 4556667677788776 554
No 247
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.55 E-value=5e-08 Score=75.51 Aligned_cols=84 Identities=24% Similarity=0.447 Sum_probs=52.4
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-------------------hHHHHHhcCC
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-------------------GFEEHFKCMP 100 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-------------------~~~~~~~~~~ 100 (351)
.+||++++.||++||++|+.+.+.+.+..+-......++.++.++++++.. .+.+.+++..
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 378999999999999999999999987555322111126788888876541 2555667777
Q ss_pred ceeeec-C--hHHHHHHhhhhhhhHH
Q 018726 101 WLAVPF-D--ETLHKKLRIRKRREEL 123 (351)
Q Consensus 101 ~~~~~~-~--~~~~~~l~~~~~~~~l 123 (351)
+|++.+ + |+....+.|.-..+++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l 108 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEEL 108 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHH
Confidence 889888 4 5444444554443433
No 248
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.51 E-value=2.7e-07 Score=73.04 Aligned_cols=74 Identities=19% Similarity=0.369 Sum_probs=47.2
Q ss_pred cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726 159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 238 (351)
Q Consensus 159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 238 (351)
+.+..+..++.|..+|||.|+...|.|.++++.. +++.+-.+..|.+ .++..
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-----p~i~~~~i~rd~~-----------------------~el~~ 88 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEAN-----PNIEVRIILRDEN-----------------------KELMD 88 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH------TTEEEEEE-HHHH-----------------------HHHTT
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-----CCCeEEEEEecCC-----------------------hhHHH
Confidence 3445678899999999999999999999999875 4566666666643 23333
Q ss_pred H---cCcCceeeEEEECCCCceEec
Q 018726 239 I---FNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 239 ~---~~i~~~P~~~lid~~G~v~~~ 260 (351)
+ .|...+|+++++|.+|+++.+
T Consensus 89 ~~lt~g~~~IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 89 QYLTNGGRSIPTFIFLDKDGKELGR 113 (129)
T ss_dssp TTTT-SS--SSEEEEE-TT--EEEE
T ss_pred HHHhCCCeecCEEEEEcCCCCEeEE
Confidence 3 467899999999999999987
No 249
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.51 E-value=2.1e-07 Score=70.79 Aligned_cols=60 Identities=13% Similarity=0.264 Sum_probs=47.6
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcC--Cceeeec
Q 018726 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCM--PWLAVPF 106 (351)
Q Consensus 42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~--~~~~~~~ 106 (351)
|+++++.|+++||++|..+.|.+.+++++++++ +.++.+|.++. .+.+.++.. .+|++.+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-----v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-----LLFVVVDADDFGRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-----EEEEEEchHhhHHHHHHcCCChhhCCEEEE
Confidence 789999999999999999999999999999865 44555554432 466666665 6788877
No 250
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.51 E-value=4.4e-07 Score=78.62 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=54.0
Q ss_pred cCcce-eeCCCCcccc-cCCCCCeEEE-EEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh
Q 018726 23 EGVEF-LLSRQGKVPL-SSCGGKTICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90 (351)
Q Consensus 23 ~~~~~-l~~~~g~~~~-~~~~gk~v~v-~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~ 90 (351)
..+++ +.+.+|++.+ +.++||+++| .||++||+.|...++.|.++++++++.| ++++.||+|....
T Consensus 12 ~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~ 80 (215)
T PRK13191 12 KFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNIS 80 (215)
T ss_pred cCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHH
Confidence 34455 6777888555 4479997665 8899999999999999999999999887 8999999997543
No 251
>smart00594 UAS UAS domain.
Probab=98.51 E-value=6.5e-07 Score=70.47 Aligned_cols=74 Identities=15% Similarity=0.315 Sum_probs=54.3
Q ss_pred eecccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhh
Q 018726 157 TVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR 233 (351)
Q Consensus 157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~ 233 (351)
..+.-.+|.++|+|+++||++|..+...+ .++.+.++ .++.++.+++.... .
T Consensus 21 ~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~----~~fv~~~~dv~~~e---------------------g 75 (122)
T smart00594 21 QEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR----ENFIFWQVDVDTSE---------------------G 75 (122)
T ss_pred HHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH----cCEEEEEecCCChh---------------------H
Confidence 34444689999999999999999988643 23444443 44555555544332 4
Q ss_pred HHHHHHcCcCceeeEEEECCCC
Q 018726 234 QDLCRIFNIKGIPALVLIGPDG 255 (351)
Q Consensus 234 ~~~~~~~~i~~~P~~~lid~~G 255 (351)
..+++.|++.++|+++++|++|
T Consensus 76 ~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 76 QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HHHHHhcCcCCCCEEEEEecCC
Confidence 6899999999999999999997
No 252
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.51 E-value=2.9e-07 Score=67.05 Aligned_cols=65 Identities=22% Similarity=0.522 Sum_probs=42.3
Q ss_pred ccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726 37 LSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (351)
Q Consensus 37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~ 106 (351)
.+..+||+++|+|+++||++|+.+...+ .++.+.+.++ ++.+.+|.+...-...+....+|++.+
T Consensus 12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~-----fv~v~vd~~~~~~~~~~~~~~~P~~~~ 79 (82)
T PF13899_consen 12 EAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN-----FVLVKVDVDDEDPNAQFDRQGYPTFFF 79 (82)
T ss_dssp HHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC-----SEEEEEETTTHHHHHHHHHCSSSEEEE
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC-----EEEEEEEcCCCChhHHhCCccCCEEEE
Confidence 3345799999999999999999998877 4555545544 555555554332211222244677765
No 253
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.49 E-value=9.2e-07 Score=74.13 Aligned_cols=75 Identities=29% Similarity=0.457 Sum_probs=63.6
Q ss_pred ceeeCCCCc-ccccCCCCCeEEEEEeCCCChh-hhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHhcCC
Q 018726 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFKCMP 100 (351)
Q Consensus 26 ~~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~-C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~~~~ 100 (351)
..|.+.+|+ +++++++||+++|.|..+.|+. |..++..+.++.+++...+.++++++|++|..+ +.++++.+.++
T Consensus 35 f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~~ 114 (174)
T PF02630_consen 35 FTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKFG 114 (174)
T ss_dssp -EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCHT
T ss_pred cEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhcC
Confidence 349999999 9999999999999999999986 999999999999999887777999999999643 34777766554
No 254
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.49 E-value=5e-07 Score=77.77 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=51.2
Q ss_pred eeCCCCcccccCCCC-CeE-EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726 28 LLSRQGKVPLSSCGG-KTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (351)
Q Consensus 28 l~~~~g~~~~~~~~g-k~v-~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~ 89 (351)
+.+.+|.++++++.| |++ ++.||++||+.|...++.+.++++++++.| ++++.|++|...
T Consensus 10 ~~~~~g~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~ 71 (203)
T cd03016 10 ADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVE 71 (203)
T ss_pred EecCCCcEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHH
Confidence 556667788888888 654 568999999999999999999999999887 899999999643
No 255
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2e-06 Score=69.32 Aligned_cols=118 Identities=19% Similarity=0.326 Sum_probs=94.3
Q ss_pred hhccCCCcEecCCCcceeecccCCcEEEEEEe--cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC--CHHHHH
Q 018726 140 LAIEGRDYVLSRDHRKITVSELAGKTIGLYFG--AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DHKEFD 215 (351)
Q Consensus 140 ~g~~~pdf~~~~~g~~~~l~~~~gk~vll~F~--a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~--~~~~~~ 215 (351)
+|+.+|+|+.+.+..++.+.++-|.-+.|.|. +..-|.|..++..+.+++-+|.+ +++..+++|+|. +...|.
T Consensus 8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~K---RnvKlialS~d~vesH~~Wi 84 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDK---RNVKLIALSVDDVESHKDWI 84 (224)
T ss_pred ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhh---cCceEEEeehhhHHHHHHHH
Confidence 68999999997777789999999987777775 45667799999999999999987 999999999995 334454
Q ss_pred hhhcc----CC-ceeeccCchhhHHHHHHcCcC------------ceeeEEEECCCCceEec
Q 018726 216 LNHSI----MP-WLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST 260 (351)
Q Consensus 216 ~~~~~----~~-~~~~~~~~d~~~~~~~~~~i~------------~~P~~~lid~~G~v~~~ 260 (351)
+-++. .+ -+.+|...|+.++++-.|++- ....++++|++.+++-.
T Consensus 85 ~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs 146 (224)
T KOG0854|consen 85 KDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLS 146 (224)
T ss_pred HHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEE
Confidence 44432 22 356788889999999998762 35689999999998754
No 256
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.49 E-value=2.3e-07 Score=67.57 Aligned_cols=65 Identities=32% Similarity=0.744 Sum_probs=44.8
Q ss_pred cCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHH
Q 018726 161 LAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 237 (351)
Q Consensus 161 ~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 237 (351)
-+||+++|+|+++||++|+.+...+ .++.+.+. .++..+.|..+... ...
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~----~~fv~v~vd~~~~~----------------------~~~- 67 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN----KNFVLVKVDVDDED----------------------PNA- 67 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH----HCSEEEEEETTTHH----------------------HHH-
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH----CCEEEEEEEcCCCC----------------------hhH-
Confidence 3589999999999999999998776 34444344 45667777665431 111
Q ss_pred HHcCcCceeeEEEECC
Q 018726 238 RIFNIKGIPALVLIGP 253 (351)
Q Consensus 238 ~~~~i~~~P~~~lid~ 253 (351)
.+...++|+++|+||
T Consensus 68 -~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 68 -QFDRQGYPTFFFLDP 82 (82)
T ss_dssp -HHHHCSSSEEEEEET
T ss_pred -HhCCccCCEEEEeCC
Confidence 111266999999975
No 257
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.48 E-value=8e-07 Score=78.23 Aligned_cols=86 Identities=17% Similarity=0.279 Sum_probs=68.1
Q ss_pred eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHH
Q 018726 157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL 236 (351)
Q Consensus 157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 236 (351)
.+..+++++-|++||.+.|+.|.++.|.|+.+.++|+ +.|+.||+|... ...+|... .+..+
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg------i~v~~VS~DG~~-----------~p~fp~~~-~d~gq 205 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG------ISVIPISVDGTL-----------IPGLPNSR-SDSGQ 205 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC------CeEEEEecCCCC-----------CCCCCCcc-CChHH
Confidence 4556677899999999999999999999999999885 689999999642 11233222 15678
Q ss_pred HHHcCcCceeeEEEECCCCceEec
Q 018726 237 CRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 237 ~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
++++|+..+|+++|++++.+....
T Consensus 206 a~~l~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 206 AQHLGVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred HHhcCCccCceEEEEECCCCcEEE
Confidence 999999999999999998655444
No 258
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.44 E-value=1.2e-06 Score=76.61 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=66.7
Q ss_pred eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHH
Q 018726 157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL 236 (351)
Q Consensus 157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 236 (351)
.+.++.+++-|++||.+.|+.|.++.|.|+.+.++|+ +.|+.||+|... ...+|... .+...
T Consensus 137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg------~~v~~VS~DG~~-----------~p~fp~~~-~d~gq 198 (248)
T PRK13703 137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG------LSVIPVSVDGVI-----------NPLLPDSR-TDQGQ 198 (248)
T ss_pred HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC------CeEEEEecCCCC-----------CCCCCCCc-cChhH
Confidence 3556677899999999999999999999999999886 689999999642 11233221 24566
Q ss_pred HHHcCcCceeeEEEECCCCceEec
Q 018726 237 CRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 237 ~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
+.++|+..+|+++|++++.+-...
T Consensus 199 a~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 199 AQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred HHhcCCcccceEEEEECCCCcEEE
Confidence 789999999999999998644433
No 259
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.43 E-value=7e-07 Score=76.63 Aligned_cols=59 Identities=27% Similarity=0.317 Sum_probs=52.9
Q ss_pred CCCCc-ccccCCCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh
Q 018726 30 SRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90 (351)
Q Consensus 30 ~~~g~-~~~~~~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~ 90 (351)
+.+|+ +++++++||+++|.||+ +||+.|...++.+.++++++.+.| ++++.|++|....
T Consensus 23 ~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~ 83 (199)
T PTZ00253 23 NGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYA 83 (199)
T ss_pred CCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHH
Confidence 45667 99999999999999996 889999999999999999999887 8999999997643
No 260
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.42 E-value=2.5e-07 Score=91.65 Aligned_cols=84 Identities=15% Similarity=0.282 Sum_probs=56.5
Q ss_pred ccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHhcCCceeeec---C
Q 018726 37 LSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFKCMPWLAVPF---D 107 (351)
Q Consensus 37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~~~~~~~~~~---~ 107 (351)
.+..+||+|+|+|||+||++|+.+.+.. .++.+.+++ +.++.++++.+. ..+.+.++...+|++.+ +
T Consensus 469 ~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~----~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~ 544 (571)
T PRK00293 469 EAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD----TVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQ 544 (571)
T ss_pred HHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC----CEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCC
Confidence 3445799999999999999999998875 667776642 556666665432 24666677788888887 3
Q ss_pred hHH--HHHHhhhhhhhHHh
Q 018726 108 ETL--HKKLRIRKRREELK 124 (351)
Q Consensus 108 ~~~--~~~l~~~~~~~~l~ 124 (351)
|+. ..++.+....+++.
T Consensus 545 G~~i~~~r~~G~~~~~~f~ 563 (571)
T PRK00293 545 GQEIPDARVTGFMDAAAFA 563 (571)
T ss_pred CCCcccccccCCCCHHHHH
Confidence 544 23455544444443
No 261
>PHA02125 thioredoxin-like protein
Probab=98.41 E-value=3e-07 Score=65.76 Aligned_cols=49 Identities=22% Similarity=0.515 Sum_probs=37.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeee
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVP 105 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~ 105 (351)
++.||++||++|+.+.|.+.++. +.++++|.++ ..+.+.++...+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----------~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----------YTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----------heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 78999999999999999986541 2355666543 3467778888888887
No 262
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.40 E-value=3.4e-07 Score=71.98 Aligned_cols=77 Identities=5% Similarity=0.078 Sum_probs=48.0
Q ss_pred ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec---Ch
Q 018726 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF---DE 108 (351)
Q Consensus 35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~---~~ 108 (351)
+.....+||+|+|+|+++||++|+.+...+ .++.+.+++. +..+-+..|.+..... ..+..+|++.| +|
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~---Fv~V~l~~d~td~~~~--~~g~~vPtivFld~~g 90 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQED---FIMLNLVHETTDKNLS--PDGQYVPRIMFVDPSL 90 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhC---eEEEEEEeccCCCCcC--ccCcccCeEEEECCCC
Confidence 344456899999999999999999998865 2344444333 4333344332221111 13356788888 66
Q ss_pred HHHHHHhh
Q 018726 109 TLHKKLRI 116 (351)
Q Consensus 109 ~~~~~l~~ 116 (351)
+...++.|
T Consensus 91 ~vi~~i~G 98 (130)
T cd02960 91 TVRADITG 98 (130)
T ss_pred CCcccccc
Confidence 66666666
No 263
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.40 E-value=3.7e-07 Score=70.41 Aligned_cols=81 Identities=7% Similarity=0.046 Sum_probs=48.1
Q ss_pred CCCeEEEEEeC--CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC------hhhHHHHHhcC--Cceeeec--Ch
Q 018726 41 GGKTICLFFSA--NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD------ENGFEEHFKCM--PWLAVPF--DE 108 (351)
Q Consensus 41 ~gk~v~v~F~a--~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~------~~~~~~~~~~~--~~~~~~~--~~ 108 (351)
+.+.+||.||| |||+ . .|++.+|+.++..... .|++..+|++ +..+++.+++. ++|++.+ +|
T Consensus 17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~--~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g 90 (116)
T cd03007 17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATD--DLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGG 90 (116)
T ss_pred cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcC--ceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCC
Confidence 67899999999 7777 2 2445555544433221 2555555552 23577777776 7888876 55
Q ss_pred H--HHHHHhhh-hhhhHHhhhc
Q 018726 109 T--LHKKLRIR-KRREELKAID 127 (351)
Q Consensus 109 ~--~~~~l~~~-~~~~~l~~~~ 127 (351)
+ ....+.+. ...+.|..++
T Consensus 91 ~~~~~~~Y~G~~r~~~~lv~~v 112 (116)
T cd03007 91 DFENPVPYSGADVTVDALQRFL 112 (116)
T ss_pred CcCCCccCCCCcccHHHHHHHH
Confidence 3 23455553 4555554443
No 264
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.40 E-value=1.9e-06 Score=65.65 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=55.4
Q ss_pred CcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC
Q 018726 146 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR 209 (351)
Q Consensus 146 df~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~ 209 (351)
+|++ +.+|+.++++.++||++||.-.|+.|+.-. ....|++|+++|++ .+++|++++++.
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~---~gl~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD---KGLEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG---GTEEEEEEEBST
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhc---CCeEEEeeehHH
Confidence 5777 999999999999999999999999999988 77799999999987 889999999864
No 265
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.38 E-value=9.3e-07 Score=78.27 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=47.5
Q ss_pred ccccCC-CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC
Q 018726 35 VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (351)
Q Consensus 35 ~~~~~~-~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~ 88 (351)
++++++ +||+++|.|| ++||+.|...++.+.++++++++.| ++|+.|++|..
T Consensus 90 vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~ 143 (261)
T PTZ00137 90 FNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSP 143 (261)
T ss_pred EeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCH
Confidence 788887 8988888888 7999999999999999999999887 88999999873
No 266
>PRK13189 peroxiredoxin; Provisional
Probab=98.38 E-value=1.5e-06 Score=75.63 Aligned_cols=65 Identities=25% Similarity=0.317 Sum_probs=53.0
Q ss_pred cCcce-eeCCCCcccccC-CCCCeEE-EEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726 23 EGVEF-LLSRQGKVPLSS-CGGKTIC-LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (351)
Q Consensus 23 ~~~~~-l~~~~g~~~~~~-~~gk~v~-v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~ 89 (351)
..+++ +.+.+|++.+++ +.||+++ +.||++||+.|...++.+.++++++++.| ++++.||+|...
T Consensus 14 ~aPdF~~~~~~g~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~ 81 (222)
T PRK13189 14 KFPEFEVKTTHGPIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVF 81 (222)
T ss_pred cCCCcEeEcCCCCEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHH
Confidence 44555 667777766666 5899554 57889999999999999999999998877 889999999754
No 267
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.9e-06 Score=69.74 Aligned_cols=75 Identities=24% Similarity=0.376 Sum_probs=64.2
Q ss_pred cCcce-eeCCCCc-ccccCCCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726 23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM 99 (351)
Q Consensus 23 ~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 99 (351)
..++| |++.+|+ ++++++.||+|+|+||. .+.+-|...+-.|.+.+.++++.| .+|+.||.|... +.+++.+..
T Consensus 9 ~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds~~-~~~~F~~k~ 85 (157)
T COG1225 9 KAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDSPK-SHKKFAEKH 85 (157)
T ss_pred cCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCCHH-HHHHHHHHh
Confidence 55667 9999999 99999999999999998 889999999999999999999887 889999999644 445555544
Q ss_pred C
Q 018726 100 P 100 (351)
Q Consensus 100 ~ 100 (351)
.
T Consensus 86 ~ 86 (157)
T COG1225 86 G 86 (157)
T ss_pred C
Confidence 4
No 268
>PRK15000 peroxidase; Provisional
Probab=98.37 E-value=1.4e-06 Score=74.61 Aligned_cols=47 Identities=32% Similarity=0.552 Sum_probs=43.2
Q ss_pred CCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726 41 GGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (351)
Q Consensus 41 ~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~ 89 (351)
+||+++|.||+ .||+.|...++.+.++++++++.| ++|+.|++|...
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~ 80 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEF 80 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHH
Confidence 79999999999 599999999999999999999887 899999999653
No 269
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.35 E-value=1e-06 Score=61.35 Aligned_cols=60 Identities=10% Similarity=0.115 Sum_probs=44.6
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChH
Q 018726 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDET 109 (351)
Q Consensus 45 v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 109 (351)
-+..|+++||++|+++.+.++++++... .+.+..++++.+. ...+.++....|++.++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~~~~~-~l~~~~~i~~vPti~i~~~ 61 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDAAEFP-DLADEYGVMSVPAIVINGK 61 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEcccCH-hHHHHcCCcccCEEEECCE
Confidence 3678999999999999999999976532 2667777766554 3555667777888887663
No 270
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=4.8e-07 Score=85.92 Aligned_cols=69 Identities=28% Similarity=0.556 Sum_probs=61.7
Q ss_pred cEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcC
Q 018726 164 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 243 (351)
Q Consensus 164 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~ 243 (351)
|..+|.||++||++|+.+.|.+.++++.... +.+-+.|.+|++-.+. +..+++.|+|.
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~-W~~vv~vaaVdCA~~~---------------------N~~lCRef~V~ 115 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEK-WRPVVRVAAVDCADEE---------------------NVKLCREFSVS 115 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhc-ccceeEEEEeeccchh---------------------hhhhHhhcCCC
Confidence 5788999999999999999999999999886 7788888888886654 68999999999
Q ss_pred ceeeEEEECCC
Q 018726 244 GIPALVLIGPD 254 (351)
Q Consensus 244 ~~P~~~lid~~ 254 (351)
++|++..+.++
T Consensus 116 ~~Ptlryf~~~ 126 (606)
T KOG1731|consen 116 GYPTLRYFPPD 126 (606)
T ss_pred CCceeeecCCc
Confidence 99999999766
No 271
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.26 E-value=2.4e-06 Score=73.43 Aligned_cols=119 Identities=15% Similarity=0.225 Sum_probs=82.5
Q ss_pred HHhhhccCCCcEe-cCCCcc-eeecccC--CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---
Q 018726 137 EQLLAIEGRDYVL-SRDHRK-ITVSELA--GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--- 209 (351)
Q Consensus 137 ~~~~g~~~pdf~~-~~~g~~-~~l~~~~--gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~--- 209 (351)
+..+|.+|||..+ +++|++ .++.++. +|++||+|.+-.||+-+.-+..++++.++|.+ .+.++.|-+.+
T Consensus 72 ~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d----~adFl~VYI~EAHp 147 (237)
T PF00837_consen 72 EAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD----VADFLIVYIEEAHP 147 (237)
T ss_pred ceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh----hhheehhhHhhhCc
Confidence 3456999999999 999998 8999985 68999999999999999999999999999983 33344444321
Q ss_pred -----------------CH-H--HHHhhhccCCceeeccCch-hhHHHHHHcCcCceeeEEEECCCCceEeccc
Q 018726 210 -----------------DH-K--EFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPDGKTISTNG 262 (351)
Q Consensus 210 -----------------~~-~--~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~ 262 (351)
+. + ..++.+.... ...|+..| -++...+.||..--. +||| ++|+|+|.+|
T Consensus 148 sDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA~PeR-lyIi-~~gkv~Y~Gg 218 (237)
T PF00837_consen 148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGALPER-LYII-QDGKVVYKGG 218 (237)
T ss_pred CCCccCCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCCCcce-EEEE-ECCEEEEeCC
Confidence 00 1 1111222111 34555444 356777778765333 5555 7999999975
No 272
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.21 E-value=5.8e-06 Score=63.40 Aligned_cols=69 Identities=41% Similarity=0.700 Sum_probs=54.0
Q ss_pred eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHH
Q 018726 157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL 236 (351)
Q Consensus 157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 236 (351)
.....+++++++.||++||++|+.+.|.+.++.+++. ..+.++.++..+. ...+
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~i~~~~~----------------------~~~~ 79 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYG----GDVEVVAVNVDDE----------------------NPDL 79 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhc----CCcEEEEEECCCC----------------------ChHH
Confidence 3344448899999999999999999999999999986 3567888877511 3566
Q ss_pred HHHcC--cCceeeEEEE
Q 018726 237 CRIFN--IKGIPALVLI 251 (351)
Q Consensus 237 ~~~~~--i~~~P~~~li 251 (351)
...|+ +..+|+++++
T Consensus 80 ~~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 80 AAEFGVAVRSIPTLLLF 96 (127)
T ss_pred HHHHhhhhccCCeEEEE
Confidence 77777 7888988765
No 273
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.21 E-value=5.1e-06 Score=63.70 Aligned_cols=68 Identities=24% Similarity=0.466 Sum_probs=50.0
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh--cCCceeeec--ChHH
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK--CMPWLAVPF--DETL 110 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~--~~~~~~~~~--~~~~ 110 (351)
..++++++.||++||++|+.++|.+.++++.+... +.++.++...........+. ...+|++.. ++..
T Consensus 30 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 30 LKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred cCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC---cEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 34899999999999999999999999999998762 56777776522223444455 666777764 4443
No 274
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.20 E-value=9.6e-06 Score=54.78 Aligned_cols=63 Identities=29% Similarity=0.590 Sum_probs=48.7
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
++.||++||++|....+.+.++ .+.. .++.++.++++..... ......+++..+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~P 55 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLN---KGVKFEAVDVDEDPAL--------------------EKELKRYGVGGVP 55 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhC---CCcEEEEEEcCCChHH--------------------hhHHHhCCCcccc
Confidence 5789999999999999999988 3332 7899999998875311 1113578899999
Q ss_pred eEEEECCC
Q 018726 247 ALVLIGPD 254 (351)
Q Consensus 247 ~~~lid~~ 254 (351)
++++++++
T Consensus 56 ~~~~~~~~ 63 (69)
T cd01659 56 TLVVFGPG 63 (69)
T ss_pred EEEEEeCC
Confidence 99999765
No 275
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.12 E-value=5.5e-06 Score=61.18 Aligned_cols=67 Identities=13% Similarity=0.024 Sum_probs=53.1
Q ss_pred cCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChH
Q 018726 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDET 109 (351)
Q Consensus 38 ~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 109 (351)
.++++.+-+..|+++||++|+...+.+.++++.+. + +.+..++++... ...+.++++..|++.++|+
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~---i~~~~vd~~~~~-e~a~~~~V~~vPt~vidG~ 74 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-N---IEHEMIDGALFQ-DEVEERGIMSVPAIFLNGE 74 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-C---ceEEEEEhHhCH-HHHHHcCCccCCEEEECCE
Confidence 36788889999999999999999999999998653 2 667777766443 4666788888889988765
No 276
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.11 E-value=2.7e-05 Score=63.50 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=47.8
Q ss_pred cceeecccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCH-HHHHhhhccCCceeeccC
Q 018726 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDH-KEFDLNHSIMPWLAIPYE 229 (351)
Q Consensus 154 ~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~-~~~~~~~~~~~~~~~~~~ 229 (351)
+.+..+.-.+|+++|.++++||..|..+...- .++++.+++ .+|.|.+|+++ .++...+.
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~------~FI~VkvDree~Pdid~~y~---------- 91 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR------NFIPVKVDREERPDIDKIYM---------- 91 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH------H-EEEEEETTT-HHHHHHHH----------
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC------CEEEEEeccccCccHHHHHH----------
Confidence 34555555789999999999999999887521 234444442 36666677653 22222221
Q ss_pred chhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726 230 DRARQDLCRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 230 ~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
.......|..|+|++++++|+|+.++.
T Consensus 92 ----~~~~~~~~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 92 ----NAVQAMSGSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp ----HHHHHHHS---SSEEEEE-TTS-EEEE
T ss_pred ----HHHHHhcCCCCCCceEEECCCCCeeee
Confidence 111122277899999999999999876
No 277
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.07 E-value=1.9e-05 Score=67.95 Aligned_cols=73 Identities=26% Similarity=0.452 Sum_probs=63.2
Q ss_pred cceeeCCCCc-ccccCCCCCeEEEEEeCCCChh-hhhhhHHHHHHHHHHh-hcCCcEEEEEEEecCChhh---HHHHHh
Q 018726 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLR-TRGTELEVIFISFDHDENG---FEEHFK 97 (351)
Q Consensus 25 ~~~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~-C~~~~p~~~~l~~~~~-~~~~~~~iv~i~~d~~~~~---~~~~~~ 97 (351)
...|.+.+|+ +.+..++||+++|.|.-+.|+. |..+...+.++.+++. ..+..+++++|++|.+++. .+++..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 3459999999 9999999999999999999998 9999999999999998 6677799999999975543 555544
No 278
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.05 E-value=5.3e-05 Score=75.31 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=102.1
Q ss_pred cCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH-HhcCCceeeec---ChH-HHH
Q 018726 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH-FKCMPWLAVPF---DET-LHK 112 (351)
Q Consensus 38 ~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~-~~~~~~~~~~~---~~~-~~~ 112 (351)
..+++.+.++.|+.+.|..|..+...+++++. +.++ +.+...+...+.+.+.++ ++.. |++.+ +++ ..-
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~---i~~~~~~~~~~~~~~~~~~v~~~--P~~~i~~~~~~~~~i 435 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEK---LNSEAVNRGEEPESETLPKITKL--PTVALLDDDGNYTGL 435 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCc---EEEEEeccccchhhHhhcCCCcC--CEEEEEeCCCcccce
Confidence 35788888999999999899998888888885 4544 666666655444333333 3334 45544 222 223
Q ss_pred HHhhhhhhhHHhhhccccccccchHHhhhccCCCcEecCCCcc-eeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHH
Q 018726 113 KLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRK-ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE 191 (351)
Q Consensus 113 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~-~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~ 191 (351)
+|.|--.=.++..++..-.. ++...+. ++.+. -.+..+.++..+-.|.+++||+|......++++..+
T Consensus 436 ~f~g~P~G~Ef~s~i~~i~~-------~~~~~~~----l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~ 504 (555)
T TIGR03143 436 KFHGVPSGHELNSFILALYN-------AAGPGQP----LGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASL 504 (555)
T ss_pred EEEecCccHhHHHHHHHHHH-------hcCCCCC----CCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 44431111122111111100 0000000 00000 012344556667788999999999988888887776
Q ss_pred hhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726 192 LKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 192 ~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
. +++..-.|.... ..+++++|+|.++|++++ ||++++.
T Consensus 505 ~-----~~i~~~~i~~~~-----------------------~~~~~~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 505 N-----PNVEAEMIDVSH-----------------------FPDLKDEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred C-----CCceEEEEECcc-----------------------cHHHHHhCCceecCEEEE---CCEEEEe
Confidence 4 345555555543 368899999999999887 5666654
No 279
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.03 E-value=7.5e-05 Score=58.87 Aligned_cols=70 Identities=11% Similarity=0.208 Sum_probs=55.2
Q ss_pred cEEEEEEecC--CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 164 KTIGLYFGAH--WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 164 k~vll~F~a~--~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
...+|+|-+. -+|-+....-.|.++.++|.+ .++.++.|++|.+ ..++.+||
T Consensus 35 ~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~---~~v~~akVDiD~~-----------------------~~LA~~fg 88 (132)
T PRK11509 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD---YTWQVAIADLEQS-----------------------EAIGDRFG 88 (132)
T ss_pred CcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC---CceEEEEEECCCC-----------------------HHHHHHcC
Confidence 3455555432 344577777889999999964 5588999998875 79999999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
|.++||++++ ++|+++.+
T Consensus 89 V~siPTLl~F-kdGk~v~~ 106 (132)
T PRK11509 89 VFRFPATLVF-TGGNYRGV 106 (132)
T ss_pred CccCCEEEEE-ECCEEEEE
Confidence 9999999999 89998877
No 280
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=97.92 E-value=4.2e-05 Score=65.91 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=70.3
Q ss_pred CceeeecccCcceeeCCCCc-ccccCCCCCeEEEEEeCCCChh-hhhhhHHHHHHHHHHhhc-CCcEEEEEEEecCCh--
Q 018726 15 DFLTVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTR-GTELEVIFISFDHDE-- 89 (351)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~-C~~~~p~~~~l~~~~~~~-~~~~~iv~i~~d~~~-- 89 (351)
+.-+..-| ++..|++.+|+ ++..++.||+++|+|.-+.||. |...+..|.++-+++..+ |..+.-+||++|..+
T Consensus 112 ~~gk~~iG-GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~ 190 (280)
T KOG2792|consen 112 TAGKPAIG-GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDS 190 (280)
T ss_pred hcCCCccC-CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCC
Confidence 33443333 56669999999 9999999999999999999998 999999999988888666 544568999999744
Q ss_pred -hhHHHHHhcCCceeee
Q 018726 90 -NGFEEHFKCMPWLAVP 105 (351)
Q Consensus 90 -~~~~~~~~~~~~~~~~ 105 (351)
+.++++++.+. |.+.
T Consensus 191 ~~~~~eY~~eF~-pkll 206 (280)
T KOG2792|consen 191 VEVVAEYVSEFH-PKLL 206 (280)
T ss_pred HHHHHHHHHhcC-hhhh
Confidence 35888888775 4443
No 281
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.9e-05 Score=66.20 Aligned_cols=93 Identities=25% Similarity=0.465 Sum_probs=72.0
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
+.+++++.|++.|.+.|....|.+.++..+|.. +.+.+-.|++..- ...+.+|+
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~---~~lkFGkvDiGrf-----------------------pd~a~kfr 196 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN---NLLKFGKVDIGRF-----------------------PDVAAKFR 196 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCC---CCCcccceeeccC-----------------------cChHHhee
Confidence 346899999999999999999999999999976 7788887777653 35566776
Q ss_pred c------CceeeEEEECCCCceEeccccceeeccC-CcCCCCchhhHHH
Q 018726 242 I------KGIPALVLIGPDGKTISTNGKEMISLYG-AKAFPFTESRIAE 283 (351)
Q Consensus 242 i------~~~P~~~lid~~G~v~~~~~~~~~~~~g-~~~~p~~~~~~~~ 283 (351)
| +.+||++++ ++|+-+.|. ..+...| +..++++++.+-.
T Consensus 197 is~s~~srQLPT~ilF-q~gkE~~Rr--P~vd~~gra~s~~fSeenv~~ 242 (265)
T KOG0914|consen 197 ISLSPGSRQLPTYILF-QKGKEVSRR--PDVDVKGRAVSFPFSEENVCQ 242 (265)
T ss_pred eccCcccccCCeEEEE-ccchhhhcC--ccccccCCcccccccHHHHHH
Confidence 6 468999999 889877663 3333343 6778888876654
No 282
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.90 E-value=4.8e-05 Score=62.45 Aligned_cols=60 Identities=28% Similarity=0.442 Sum_probs=49.5
Q ss_pred eeCCC---Cc-ccccC-CCCCeEEEEEeC-CCChhhhhh-hHHHHHHHHHHhhcCCcE-EEEEEEecCCh
Q 018726 28 LLSRQ---GK-VPLSS-CGGKTICLFFSA-NWCRPCKTF-TPQLVQLYDTLRTRGTEL-EVIFISFDHDE 89 (351)
Q Consensus 28 l~~~~---g~-~~~~~-~~gk~v~v~F~a-~wC~~C~~~-~p~~~~l~~~~~~~~~~~-~iv~i~~d~~~ 89 (351)
|.+.+ |+ +++++ ++||+++|.||. .||+.|... ++.+.+.++++.+.| + +|+.|+.|...
T Consensus 10 l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~ 77 (155)
T cd03013 10 LFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPF 77 (155)
T ss_pred eeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHH
Confidence 55553 78 99999 588766666665 999999999 999999999998887 6 59999998654
No 283
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.87 E-value=2.7e-05 Score=75.04 Aligned_cols=76 Identities=20% Similarity=0.394 Sum_probs=54.7
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHH-HHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLI-EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 240 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~-~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 240 (351)
++|+|+|+|||.||-.|+...+..- +....++- .++..+-+++-.+ +....++.++|
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~---~~~vlLqaDvT~~-------------------~p~~~~lLk~~ 530 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL---QDVVLLQADVTAN-------------------DPAITALLKRL 530 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc---CCeEEEEeeecCC-------------------CHHHHHHHHHc
Confidence 4569999999999999999887543 33333332 4555555544332 22357889999
Q ss_pred CcCceeeEEEECCCCceEe
Q 018726 241 NIKGIPALVLIGPDGKTIS 259 (351)
Q Consensus 241 ~i~~~P~~~lid~~G~v~~ 259 (351)
|+-+.|++++++++|+-..
T Consensus 531 ~~~G~P~~~ff~~~g~e~~ 549 (569)
T COG4232 531 GVFGVPTYLFFGPQGSEPE 549 (569)
T ss_pred CCCCCCEEEEECCCCCcCc
Confidence 9999999999999987543
No 284
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.85 E-value=0.0001 Score=52.52 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=39.6
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH-HcCcCce
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IFNIKGI 245 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~i~~~ 245 (351)
+..||++||++|++..+.|.++. +.+-.++++.+... ...+.. .+++.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~----------~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~v 52 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG----------AAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTV 52 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC----------CceEEEeCcCCHhH-------------------HHHHHHHhCCCcee
Confidence 56899999999999988775542 23445666654210 112211 2488899
Q ss_pred eeEEEECCCCceEec
Q 018726 246 PALVLIGPDGKTIST 260 (351)
Q Consensus 246 P~~~lid~~G~v~~~ 260 (351)
|++ ++ .+|+++..
T Consensus 53 P~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 53 PTV-KF-ADGSFLTN 65 (77)
T ss_pred CEE-EE-CCCeEecC
Confidence 986 45 46776654
No 285
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.84 E-value=2.6e-05 Score=60.49 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=54.2
Q ss_pred ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCC---hhhHHHHHhcCCceeeec-C
Q 018726 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHD---ENGFEEHFKCMPWLAVPF-D 107 (351)
Q Consensus 35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~---~~~~~~~~~~~~~~~~~~-~ 107 (351)
+..+..++|+++|+|+++||++|+.+.... .++.+.+++. ++++.+|.+ ...+...+....+|++.+ +
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~-----~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~ 84 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN-----FIFWQCDIDSSEGQRFLQSYKVDKYPHIAIID 84 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC-----EEEEEecCCCccHHHHHHHhCccCCCeEEEEe
Confidence 344556899999999999999999987643 4555555543 445555543 224667777778888887 3
Q ss_pred ---hHHHHHHhhhhhhhHH
Q 018726 108 ---ETLHKKLRIRKRREEL 123 (351)
Q Consensus 108 ---~~~~~~l~~~~~~~~l 123 (351)
|+...++.|....+++
T Consensus 85 ~~~g~~l~~~~G~~~~~~f 103 (114)
T cd02958 85 PRTGEVLKVWSGNITPEDL 103 (114)
T ss_pred CccCcEeEEEcCCCCHHHH
Confidence 4444455554433333
No 286
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.84 E-value=4.4e-05 Score=59.11 Aligned_cols=77 Identities=21% Similarity=0.449 Sum_probs=48.7
Q ss_pred CCcEEEEEEec-------CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhH
Q 018726 162 AGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ 234 (351)
Q Consensus 162 ~gk~vll~F~a-------~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 234 (351)
.|+.++|.|.+ +|||.|....|.+++.....+ .+..+|.+.+.. ...|+. ++.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~----~~~~lv~v~VG~-r~~Wkd---------------p~n 77 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP----ENARLVYVEVGD-RPEWKD---------------PNN 77 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S----TTEEEEEEE----HHHHC----------------TTS
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC----CCceEEEEEcCC-HHHhCC---------------CCC
Confidence 46777888875 699999999999998887754 567788777753 233322 133
Q ss_pred HHHH--HcCcCceeeEEEECCCCceE
Q 018726 235 DLCR--IFNIKGIPALVLIGPDGKTI 258 (351)
Q Consensus 235 ~~~~--~~~i~~~P~~~lid~~G~v~ 258 (351)
.+.. .+++.++||++-++..++++
T Consensus 78 ~fR~~p~~~l~~IPTLi~~~~~~rL~ 103 (119)
T PF06110_consen 78 PFRTDPDLKLKGIPTLIRWETGERLV 103 (119)
T ss_dssp HHHH--CC---SSSEEEECTSS-EEE
T ss_pred CceEcceeeeeecceEEEECCCCccc
Confidence 4444 69999999999996554433
No 287
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00021 Score=56.91 Aligned_cols=89 Identities=22% Similarity=0.403 Sum_probs=61.6
Q ss_pred ccCCcEEEEEEecCCChhhHHhHHHHH---HHHHHhhcccCCceEEEEEeCCCCHH-HHHhhhccCCceeeccCchhhHH
Q 018726 160 ELAGKTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTDRDHK-EFDLNHSIMPWLAIPYEDRARQD 235 (351)
Q Consensus 160 ~~~gk~vll~F~a~~C~~C~~~~~~l~---~l~~~~~~~~~~~~~vv~v~~d~~~~-~~~~~~~~~~~~~~~~~~d~~~~ 235 (351)
...+|+.++.|....|+.|.++-..+. ++.+.+. +++.++.+.+..... .+..--. ...-..++
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk----~hf~~~~l~i~~skpv~f~~g~k--------ee~~s~~E 106 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK----EHFSAYYLNISYSKPVLFKVGDK--------EEKMSTEE 106 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh----hCeEEEEEEeccCcceEeecCce--------eeeecHHH
Confidence 346899999999999999998877653 3444444 677788877754320 0000000 00012469
Q ss_pred HHHHcCcCceeeEEEECCCCceEec
Q 018726 236 LCRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 236 ~~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
+++.|+++++|+++++|.+|+.+..
T Consensus 107 La~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 107 LAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred HHHHhccccCceEEEEcCCCCEEEe
Confidence 9999999999999999999987766
No 288
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=97.78 E-value=1e-05 Score=50.57 Aligned_cols=30 Identities=33% Similarity=0.712 Sum_probs=27.3
Q ss_pred eeccccCCCceEEEEcCCC-CCCCCccccCc
Q 018726 317 VCDCCKMRGRFWAFSCDVC-NYDLHPKCVEG 346 (351)
Q Consensus 317 ~Cd~C~~~~~~~~~~c~~~-~~~~~~~c~~~ 346 (351)
.||.|++...|.+|+|.+| ||||+..|...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 6999999999999999999 59999999653
No 289
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.73 E-value=0.00029 Score=54.70 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=52.1
Q ss_pred ccCCcEEEEEEecC----CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726 160 ELAGKTIGLYFGAH----WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 235 (351)
Q Consensus 160 ~~~gk~vll~F~a~----~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 235 (351)
.-.+|.++|+++++ ||..|+..+.. .++.+-++ .++.+.+.++...+ ...
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln----~~fv~w~~dv~~~e---------------------g~~ 67 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN----TRMLFWACSVAKPE---------------------GYR 67 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH----cCEEEEEEecCChH---------------------HHH
Confidence 34589999999999 88889776631 23333343 45555555555432 468
Q ss_pred HHHHcCcCceeeEEEE---CCCCceEec
Q 018726 236 LCRIFNIKGIPALVLI---GPDGKTIST 260 (351)
Q Consensus 236 ~~~~~~i~~~P~~~li---d~~G~v~~~ 260 (351)
++..+++.++|+++++ +.+.+++.+
T Consensus 68 la~~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 68 VSQALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred HHHHhCCCCCCEEEEEEecCCceEEEEE
Confidence 9999999999999999 444455555
No 290
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.68 E-value=0.00022 Score=50.05 Aligned_cols=55 Identities=20% Similarity=0.637 Sum_probs=40.2
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
+..|+++||++|+...+.|.+ .++.+..++++.+... ...+.+.+++.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~----------~~i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP 52 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS----------KGIAFEEIDVEKDSAA-------------------REEVLKVLGQRGVP 52 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH----------CCCeEEEEeccCCHHH-------------------HHHHHHHhCCCccc
Confidence 468999999999998776643 3456777777754311 23567788999999
Q ss_pred eEEE
Q 018726 247 ALVL 250 (351)
Q Consensus 247 ~~~l 250 (351)
++++
T Consensus 53 ~~~~ 56 (74)
T TIGR02196 53 VIVI 56 (74)
T ss_pred EEEE
Confidence 9886
No 291
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00013 Score=55.34 Aligned_cols=72 Identities=24% Similarity=0.377 Sum_probs=54.3
Q ss_pred CCcEEEEEEec--------CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhh
Q 018726 162 AGKTIGLYFGA--------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR 233 (351)
Q Consensus 162 ~gk~vll~F~a--------~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~ 233 (351)
+|+.+.+.|.+ +|||.|.+..|.+.+..+... .++.+|.|.+... |+..++.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap----~~~~~v~v~VG~r----------------p~Wk~p~ 83 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP----EDVHFVHVYVGNR----------------PYWKDPA 83 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC----CceEEEEEEecCC----------------CcccCCC
Confidence 46667888875 799999999999998888665 6788888877642 2334445
Q ss_pred HHHHHHcCc-CceeeEEEECC
Q 018726 234 QDLCRIFNI-KGIPALVLIGP 253 (351)
Q Consensus 234 ~~~~~~~~i-~~~P~~~lid~ 253 (351)
..+....++ .++||++=.+.
T Consensus 84 n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 84 NPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred CccccCCCceeecceeeEEcC
Confidence 666667777 89999998864
No 292
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.63 E-value=0.0013 Score=64.93 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=51.3
Q ss_pred cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726 159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 238 (351)
Q Consensus 159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 238 (351)
..+.+..-+..|.+++||+|+.....+++++... +++..-.| |... ..+++.
T Consensus 112 ~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-----~~i~~~~i--d~~~---------------------~~~~~~ 163 (517)
T PRK15317 112 KALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN-----PNITHTMI--DGAL---------------------FQDEVE 163 (517)
T ss_pred HhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-----CCceEEEE--Echh---------------------CHhHHH
Confidence 3444567788999999999999888888887653 44555444 4332 468899
Q ss_pred HcCcCceeeEEEECCCCceEec
Q 018726 239 IFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 239 ~~~i~~~P~~~lid~~G~v~~~ 260 (351)
+|++.++|++++ +|+.++.
T Consensus 164 ~~~v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 164 ARNIMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred hcCCcccCEEEE---CCcEEEe
Confidence 999999999976 4454433
No 293
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.62 E-value=0.00017 Score=52.31 Aligned_cols=60 Identities=22% Similarity=0.441 Sum_probs=42.0
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
++.|+++|||+|+...+.|.++. .+ ..+.++-|+.+.+..++ ...+.+.+++..+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~----~~~~~~~v~~~~~~~~~------------------~~~l~~~~g~~~vP 56 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK----PAYEVVELDQLSNGSEI------------------QDYLEEITGQRTVP 56 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC----CCCEEEEeeCCCChHHH------------------HHHHHHHhCCCCCC
Confidence 47899999999999999988765 22 33667777665432111 13466778999999
Q ss_pred eEEE
Q 018726 247 ALVL 250 (351)
Q Consensus 247 ~~~l 250 (351)
++++
T Consensus 57 ~v~i 60 (84)
T TIGR02180 57 NIFI 60 (84)
T ss_pred eEEE
Confidence 9854
No 294
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=97.61 E-value=0.00036 Score=53.18 Aligned_cols=57 Identities=30% Similarity=0.450 Sum_probs=52.2
Q ss_pred eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~ 87 (351)
+.+.+|+ ++++.++||++||-=.|+-|+.-. ....+++|+++|+..| +.|+..-++.
T Consensus 6 ~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnq 63 (108)
T PF00255_consen 6 AKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQ 63 (108)
T ss_dssp EEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBST
T ss_pred eeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHH
Confidence 7789999 999999999999999999999877 7889999999999888 8888888863
No 295
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.56 E-value=0.00012 Score=52.05 Aligned_cols=53 Identities=21% Similarity=0.433 Sum_probs=35.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH----HhcCCceeeecC
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH----FKCMPWLAVPFD 107 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~----~~~~~~~~~~~~ 107 (351)
+..||++||++|+++.+.+.++ + +.+..++++.+....... +....+|++.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~ 58 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFA 58 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHhHHHHHHHHhCCCceeCEEEEC
Confidence 5689999999999999987653 2 345567777654332222 245567888663
No 296
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.54 E-value=0.00024 Score=47.67 Aligned_cols=57 Identities=19% Similarity=0.395 Sum_probs=40.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHH--HHHhcCCceeeec
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE--EHFKCMPWLAVPF 106 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~--~~~~~~~~~~~~~ 106 (351)
++.||++||++|+++.+.+.++ +. ...+ +.++.++++....... ........|++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-AL-LNKG--VKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-Hh-hCCC--cEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 5789999999999999999998 32 2223 7888888887654433 2445555677766
No 297
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.54 E-value=0.00068 Score=60.21 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=57.3
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC---CC-------------CH-HHHHhhhccCCce
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST---DR-------------DH-KEFDLNHSIMPWL 224 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~---d~-------------~~-~~~~~~~~~~~~~ 224 (351)
.++.+++.|..+.||+|+++...+.++.+. .++.|..+.+ .. +. +.+..........
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~ 189 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKL 189 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhcc
Confidence 578999999999999999999887765442 3355555543 11 11 1111111111100
Q ss_pred ee-cc---------CchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726 225 AI-PY---------EDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 225 ~~-~~---------~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
.+ +. ..+.+..+.+.+|+.++|++|+.|.+|++...
T Consensus 190 ~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 190 GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV 235 (251)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence 00 10 11235578889999999999999989986444
No 298
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.52 E-value=0.00085 Score=47.84 Aligned_cols=57 Identities=26% Similarity=0.493 Sum_probs=40.3
Q ss_pred ecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEE
Q 018726 171 GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVL 250 (351)
Q Consensus 171 ~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~l 250 (351)
++++|+.|......++++.++++ -++++ +.. .+ ...+ .+||+.++|++++
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~----i~~ei--~~~-~~----------------------~~~~-~~ygv~~vPalvI 55 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG----IEVEI--IDI-ED----------------------FEEI-EKYGVMSVPALVI 55 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT----EEEEE--EET-TT----------------------HHHH-HHTT-SSSSEEEE
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC----CeEEE--EEc-cC----------------------HHHH-HHcCCCCCCEEEE
Confidence 57779999998888888877763 33333 333 22 2455 9999999999954
Q ss_pred ECCCCceEec
Q 018726 251 IGPDGKTIST 260 (351)
Q Consensus 251 id~~G~v~~~ 260 (351)
||++++.
T Consensus 56 ---ng~~~~~ 62 (76)
T PF13192_consen 56 ---NGKVVFV 62 (76)
T ss_dssp ---TTEEEEE
T ss_pred ---CCEEEEE
Confidence 5888766
No 299
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=97.51 E-value=4.5e-05 Score=48.08 Aligned_cols=29 Identities=34% Similarity=0.811 Sum_probs=25.8
Q ss_pred eeccccC-CCceEEEEcCCC-CCCCCccccC
Q 018726 317 VCDCCKM-RGRFWAFSCDVC-NYDLHPKCVE 345 (351)
Q Consensus 317 ~Cd~C~~-~~~~~~~~c~~~-~~~~~~~c~~ 345 (351)
.||.|++ ...|.+|+|.+| ||||+..|..
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 6999996 567999999999 5999999965
No 300
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.43 E-value=0.0037 Score=61.74 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=50.0
Q ss_pred cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726 159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 238 (351)
Q Consensus 159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 238 (351)
..+.+..-+..|..+.||+|+.....+++++... +++..-. +|... ..+++.
T Consensus 113 ~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-----p~i~~~~--id~~~---------------------~~~~~~ 164 (515)
T TIGR03140 113 RRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN-----PNISHTM--IDGAL---------------------FQDEVE 164 (515)
T ss_pred HhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-----CCceEEE--EEchh---------------------CHHHHH
Confidence 3445667788999999999998888887776654 3444433 34332 468889
Q ss_pred HcCcCceeeEEEECCCCceEe
Q 018726 239 IFNIKGIPALVLIGPDGKTIS 259 (351)
Q Consensus 239 ~~~i~~~P~~~lid~~G~v~~ 259 (351)
+|++.++|++++ +|+.+.
T Consensus 165 ~~~v~~VP~~~i---~~~~~~ 182 (515)
T TIGR03140 165 ALGIQGVPAVFL---NGEEFH 182 (515)
T ss_pred hcCCcccCEEEE---CCcEEE
Confidence 999999999986 344443
No 301
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00095 Score=56.67 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=52.8
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHH--HhcCCceeeecChHHHHHHhhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEH--FKCMPWLAVPFDETLHKKLRIR 117 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~--~~~~~~~~~~~~~~~~~~l~~~ 117 (351)
+++.+++.|||+||.+|.++...+..+++..+ +..+++++.++- .+... ++..|+..+.+.+....++.+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~------~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~ 89 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK------NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGA 89 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh------hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhcc
Confidence 78899999999999999999999999999872 255666665433 24444 5566665555588888888763
No 302
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.40 E-value=0.00027 Score=51.20 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=37.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHH----HHHhcCCceeeecChH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE----EHFKCMPWLAVPFDET 109 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~----~~~~~~~~~~~~~~~~ 109 (351)
++.|+++||++|+++.+.+.++. .... +.++-++.+.+..... +......+|++..+|.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~---~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPA---YEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCC---CEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCE
Confidence 47899999999999999998865 2211 4455554443333333 3334456778876664
No 303
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.36 E-value=0.0016 Score=57.11 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=54.3
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---CH----------------HHHHhhhccCC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DH----------------KEFDLNHSIMP 222 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~----------------~~~~~~~~~~~ 222 (351)
.|+.+++.|..+.||+|++..+.+.++.+ .++.|..+.... .. +.+........
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~-------~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~ 178 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA-------LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKD 178 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc-------CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence 47899999999999999999988776532 345555543321 10 12222221111
Q ss_pred c--eeeccCchhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726 223 W--LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 258 (351)
Q Consensus 223 ~--~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~ 258 (351)
. .......+....+++++||.++|++++ ++|+++
T Consensus 179 ~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 179 VSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred CCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 0 011112245678999999999999885 567765
No 304
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.36 E-value=0.00046 Score=48.32 Aligned_cols=54 Identities=17% Similarity=0.349 Sum_probs=37.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhH---HHHHhcCCceeeecCh
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGF---EEHFKCMPWLAVPFDE 108 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~---~~~~~~~~~~~~~~~~ 108 (351)
+..|+++||++|++..+.+.+ .+ +.+..++++.+.... .+.+.....|++.+++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~ 58 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGH 58 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHHHHHHHHHHhCCCcccEEEECC
Confidence 567999999999999887764 23 567777887665433 3335555567777664
No 305
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.29 E-value=0.0002 Score=56.76 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=44.3
Q ss_pred ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH--HhcCCceeeec
Q 018726 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH--FKCMPWLAVPF 106 (351)
Q Consensus 37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~--~~~~~~~~~~~ 106 (351)
++....+.-++-|..+|||+|+...|.+.++++... ++++.++..|.+.+...++ .+...+|++.+
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~ 103 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKELMDQYLTNGGRSIPTFIF 103 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEE
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChhHHHHHHhCCCeecCEEEE
Confidence 344567788999999999999999999999999743 2789999988776655555 33556788888
No 306
>smart00594 UAS UAS domain.
Probab=97.29 E-value=0.00094 Score=52.42 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=45.7
Q ss_pred ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCC--h-hhHHHHHhcCCceeeec
Q 018726 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHD--E-NGFEEHFKCMPWLAVPF 106 (351)
Q Consensus 35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~--~-~~~~~~~~~~~~~~~~~ 106 (351)
+..+..++|+++|+|+++||++|+.+...+ .++.+.++++ ++++.+|.+ + ..+.+.++...+|++.+
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~-----fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIREN-----FIFWQVDVDTSEGQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcC-----EEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence 444456899999999999999999987754 3444444433 555555533 2 24677777777787777
No 307
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.27 E-value=0.00054 Score=56.00 Aligned_cols=67 Identities=18% Similarity=0.382 Sum_probs=40.6
Q ss_pred ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCChh-hHHHHH--------hcCCce
Q 018726 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDEN-GFEEHF--------KCMPWL 102 (351)
Q Consensus 35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~--------~~~~~~ 102 (351)
+..+..++|+|+|.++++||+.|..|.... .++++-++.. +|-|.+|.++. .+...+ +.-+||
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-----FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-----FIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH------EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-----EEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 444556899999999999999999987633 4566666655 77777776543 333333 355788
Q ss_pred eeec
Q 018726 103 AVPF 106 (351)
Q Consensus 103 ~~~~ 106 (351)
+..|
T Consensus 105 l~vf 108 (163)
T PF03190_consen 105 LTVF 108 (163)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 8887
No 308
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.26 E-value=0.0027 Score=54.31 Aligned_cols=89 Identities=22% Similarity=0.302 Sum_probs=54.0
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC--C-H-------------HHHHhhhccCCc--
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--D-H-------------KEFDLNHSIMPW-- 223 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~--~-~-------------~~~~~~~~~~~~-- 223 (351)
.++..++.|..+.||+|+++.+.+.+ .. .+-.+.++.+++.. . . +.|.+......-
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~--~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~ 149 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NA--DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP 149 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----cc--CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence 47899999999999999999988766 11 12344455555432 1 1 122222221111
Q ss_pred --eeeccCchhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726 224 --LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 258 (351)
Q Consensus 224 --~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~ 258 (351)
.......+....+++.+|+.++|+++ + ++|+++
T Consensus 150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 150 PAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred CccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 01112234567899999999999998 4 557653
No 309
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=97.23 E-value=0.00014 Score=44.58 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=26.5
Q ss_pred eeccccC-CCceEEEEcCCCC-CCCCccccC
Q 018726 317 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 345 (351)
Q Consensus 317 ~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~~ 345 (351)
.||.|+. +..|-+|+|.+|. |||...|-.
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~ 32 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFS 32 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhh
Confidence 5999998 6999999999998 999999954
No 310
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.21 E-value=0.0028 Score=46.17 Aligned_cols=65 Identities=22% Similarity=0.376 Sum_probs=44.7
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC--cCc
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN--IKG 244 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--i~~ 244 (351)
+..|+.+||++|+.....|+++..++ .++.+..++++.+..+ ..++.+.++ +..
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~-----~~i~~~~idi~~~~~~-------------------~~el~~~~~~~~~~ 58 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER-----DDFDYRYVDIHAEGIS-------------------KADLEKTVGKPVET 58 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc-----cCCcEEEEECCCChHH-------------------HHHHHHHHCCCCCc
Confidence 67899999999999999999987654 3466777777654211 134444444 478
Q ss_pred eeeEEEECCCCceE
Q 018726 245 IPALVLIGPDGKTI 258 (351)
Q Consensus 245 ~P~~~lid~~G~v~ 258 (351)
+|++++ +|+.+
T Consensus 59 vP~ifi---~g~~i 69 (85)
T PRK11200 59 VPQIFV---DQKHI 69 (85)
T ss_pred CCEEEE---CCEEE
Confidence 999764 46554
No 311
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.21 E-value=0.0026 Score=42.88 Aligned_cols=55 Identities=20% Similarity=0.395 Sum_probs=39.0
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
++.|+.+|||+|+.....|.+ .++.+-.++++.+.+. ...+.+..|..++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----------~~i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~~P 51 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----------KGIPYEEVDVDEDEEA-------------------REELKELSGVRTVP 51 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----------TTBEEEEEEGGGSHHH-------------------HHHHHHHHSSSSSS
T ss_pred cEEEEcCCCcCHHHHHHHHHH----------cCCeeeEcccccchhH-------------------HHHHHHHcCCCccC
Confidence 468999999999988776622 4456677777765311 34555666999999
Q ss_pred eEEE
Q 018726 247 ALVL 250 (351)
Q Consensus 247 ~~~l 250 (351)
++++
T Consensus 52 ~v~i 55 (60)
T PF00462_consen 52 QVFI 55 (60)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
No 312
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0011 Score=52.82 Aligned_cols=68 Identities=21% Similarity=0.332 Sum_probs=56.8
Q ss_pred eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHh
Q 018726 27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFK 97 (351)
Q Consensus 27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~ 97 (351)
.+.+.+|+ +++++++||+++|-=.|+-|+.-. ....++.||++|+++| +.|+..-++. +.+++++++.
T Consensus 9 ~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~fC~ 84 (162)
T COG0386 9 SVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAKFCQ 84 (162)
T ss_pred eeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHHHHH
Confidence 37899999 999999999999999999999855 5668999999999999 8888887763 4445677754
No 313
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.14 E-value=0.00035 Score=67.49 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=42.3
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHH-HHHHHHhhcCCcEEEEEEEecCChh--h---HHHHHhcCCceeeec
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLV-QLYDTLRTRGTELEVIFISFDHDEN--G---FEEHFKCMPWLAVPF 106 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~-~l~~~~~~~~~~~~iv~i~~d~~~~--~---~~~~~~~~~~~~~~~ 106 (351)
++|+|+|+|||+||-.|+.+.+..- +.....+-. +++....|.+++ . .-+.++.++.|++.|
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~----~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~f 540 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ----DVVLLQADVTANDPAITALLKRLGVFGVPTYLF 540 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC----CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEE
Confidence 4569999999999999999988654 444433333 366666665432 2 334456677788887
No 314
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.11 E-value=0.00024 Score=45.45 Aligned_cols=31 Identities=29% Similarity=0.757 Sum_probs=27.8
Q ss_pred eeeccccC-CCceEEEEcCCCC---CCCCccccCc
Q 018726 316 YVCDCCKM-RGRFWAFSCDVCN---YDLHPKCVEG 346 (351)
Q Consensus 316 ~~Cd~C~~-~~~~~~~~c~~~~---~~~~~~c~~~ 346 (351)
|.||.|++ +..|.+|+|.+|. |||...|-..
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~ 35 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK 35 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence 57999999 8999999999998 9999999553
No 315
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=97.10 E-value=0.00023 Score=45.38 Aligned_cols=31 Identities=32% Similarity=0.685 Sum_probs=28.4
Q ss_pred eeeccccCCCceEEEEcCCCC-CCCCccccCc
Q 018726 316 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVEG 346 (351)
Q Consensus 316 ~~Cd~C~~~~~~~~~~c~~~~-~~~~~~c~~~ 346 (351)
|.||.|++...|-+|+|.+|. |||+..|-..
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~ 32 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAK 32 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCc
Confidence 579999999999999999999 9999999664
No 316
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.08 E-value=0.0011 Score=48.31 Aligned_cols=61 Identities=10% Similarity=0.166 Sum_probs=43.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHhc--CCceeeecChHH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFKC--MPWLAVPFDETL 110 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~~--~~~~~~~~~~~~ 110 (351)
++.|+.+||++|.+....++++..+++ + +.+..++++.+. +.+.+..+. ...|++..+|+.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~--i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~ 68 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--D--FDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKH 68 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--C--CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEE
Confidence 678999999999999999999887653 3 678888887653 234443332 456787777653
No 317
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.95 E-value=0.00045 Score=43.43 Aligned_cols=29 Identities=31% Similarity=0.793 Sum_probs=26.4
Q ss_pred eeccccC-CCceEEEEcCCCC-CCCCccccC
Q 018726 317 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 345 (351)
Q Consensus 317 ~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~~ 345 (351)
.||.|+. ...|.+|+|.+|. |||...|-.
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~ 32 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFK 32 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhC
Confidence 6999997 6999999999999 999999955
No 318
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.90 E-value=0.0047 Score=55.13 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=53.2
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
++..|||.||-+.++.|..+...|..|+.+|+ .+.|+.|..... .+...|.
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-----~vKFvkI~a~~~------------------------~~~~~f~ 195 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-----EVKFVKIRASKC------------------------PASENFP 195 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-----TSEEEEEEECGC------------------------CTTTTS-
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-----ceEEEEEehhcc------------------------CcccCCc
Confidence 34589999999999999999999999999995 477877776532 2566789
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
+..+|+++++ ++|.++..
T Consensus 196 ~~~LPtllvY-k~G~l~~~ 213 (265)
T PF02114_consen 196 DKNLPTLLVY-KNGDLIGN 213 (265)
T ss_dssp TTC-SEEEEE-ETTEEEEE
T ss_pred ccCCCEEEEE-ECCEEEEe
Confidence 9999999999 89988766
No 319
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.90 E-value=0.0066 Score=50.67 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=34.5
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~ 207 (351)
.++++|+.|+...||+|+.+.+.+.++.++++ .++.+..+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~----~~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP----KDVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC----CCceEEEcCC
Confidence 57899999999999999999999999988875 4555554443
No 320
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.88 E-value=0.0021 Score=55.61 Aligned_cols=65 Identities=25% Similarity=0.298 Sum_probs=51.0
Q ss_pred ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC----------hhhHHHHHhcCCceeeec
Q 018726 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD----------ENGFEEHFKCMPWLAVPF 106 (351)
Q Consensus 37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~----------~~~~~~~~~~~~~~~~~~ 106 (351)
+....++.-|+.||.+.|+.|..+.|.+..+++++. +.|+.|++|.. .....+.++..-+|++.+
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 445678888999999999999999999999999983 88999999952 123444555555677666
No 321
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=96.80 E-value=0.00066 Score=42.77 Aligned_cols=31 Identities=35% Similarity=0.752 Sum_probs=28.1
Q ss_pred ceeeccccCCCceEEEEcCCCC-CCCCccccC
Q 018726 315 AYVCDCCKMRGRFWAFSCDVCN-YDLHPKCVE 345 (351)
Q Consensus 315 ~~~Cd~C~~~~~~~~~~c~~~~-~~~~~~c~~ 345 (351)
.+.|+.|+....|-+|+|..|. |||.+.|-.
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~ 35 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFA 35 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHh
Confidence 4689999999999999999996 999999954
No 322
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.80 E-value=0.0036 Score=46.13 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=49.4
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC--CC-----HHHHHhhhc-cCCceeeccCch-hhHHHH
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD--RD-----HKEFDLNHS-IMPWLAIPYEDR-ARQDLC 237 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d--~~-----~~~~~~~~~-~~~~~~~~~~~d-~~~~~~ 237 (351)
+..|+...||+|....+.+.++..... .++.+....+. .. ......... ........+... .....+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD----GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALA 76 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC----CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 468999999999999999999874443 56777766653 22 110000000 000000000000 356788
Q ss_pred HHcCcCceeeEEEEC
Q 018726 238 RIFNIKGIPALVLIG 252 (351)
Q Consensus 238 ~~~~i~~~P~~~lid 252 (351)
+.+|+.++|++++-|
T Consensus 77 ~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 77 RALGVTGTPTFVVNG 91 (98)
T ss_pred HHcCCCCCCEEEECC
Confidence 899999999999875
No 323
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.79 E-value=0.00073 Score=43.64 Aligned_cols=30 Identities=30% Similarity=0.738 Sum_probs=25.7
Q ss_pred eeeccccCCCce-EEEEcCCC-CCCCCccccC
Q 018726 316 YVCDCCKMRGRF-WAFSCDVC-NYDLHPKCVE 345 (351)
Q Consensus 316 ~~Cd~C~~~~~~-~~~~c~~~-~~~~~~~c~~ 345 (351)
|.||.|.+...+ .+|+|.+| ||||...|-.
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhh
Confidence 579999997555 99999999 5999999954
No 324
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.75 E-value=0.00059 Score=43.34 Aligned_cols=28 Identities=29% Similarity=0.759 Sum_probs=26.0
Q ss_pred eeccccCCCceEEEEcCCCC-CCCCcccc
Q 018726 317 VCDCCKMRGRFWAFSCDVCN-YDLHPKCV 344 (351)
Q Consensus 317 ~Cd~C~~~~~~~~~~c~~~~-~~~~~~c~ 344 (351)
.||+|++...|.+|+|-+|. |||...|-
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf 30 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCF 30 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHH
Confidence 59999998899999999998 99999994
No 325
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=96.69 E-value=0.001 Score=42.73 Aligned_cols=29 Identities=31% Similarity=0.663 Sum_probs=26.1
Q ss_pred eeccccC-CCceEEEEcCCCC-CCCCccccC
Q 018726 317 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 345 (351)
Q Consensus 317 ~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~~ 345 (351)
.||.|+. ...|.+|+|-+|. |||...|-.
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~ 32 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFF 32 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHh
Confidence 5999997 6899999999998 999999943
No 326
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=96.68 E-value=0.038 Score=44.62 Aligned_cols=120 Identities=11% Similarity=0.194 Sum_probs=71.9
Q ss_pred cceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHH-hhcccCCceEEEEE-eCCCCH--------HHHHhhhccCCc
Q 018726 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE-LKTTANHCFEVVLV-STDRDH--------KEFDLNHSIMPW 223 (351)
Q Consensus 154 ~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-~~~~~~~~~~vv~v-~~d~~~--------~~~~~~~~~~~~ 223 (351)
++.+.+.+.||+-+|...|-.-..=..-.|.++.+.+. |+. ++++...| +.|+.. ...+...+.+||
T Consensus 28 ~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~---d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~ 104 (160)
T PF09695_consen 28 QPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPH---DKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPW 104 (160)
T ss_pred cccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCc---cceeEEEEEecccccccchHHHHHHHHHhhhhCCC
Confidence 34455677899988877765433333344555555444 543 55665543 454321 233344445666
Q ss_pred eeeccCchhhHHHHHHcCcCc-eeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHH
Q 018726 224 LAIPYEDRARQDLCRIFNIKG-IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK 289 (351)
Q Consensus 224 ~~~~~~~d~~~~~~~~~~i~~-~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~ 289 (351)
..+-. |.+..+...|+... --.++++|++|+|++.. .| ..+++.+++..+.++
T Consensus 105 s~~vl--D~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k-------~G----~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 105 SQFVL--DSNGVVRKAWQLQEESSAIIVLDKQGKVQFVK-------EG----ALSPAEVQQVIALLK 158 (160)
T ss_pred cEEEE--cCCCceeccccCCCCCceEEEEcCCccEEEEE-------CC----CCCHHHHHHHHHHHh
Confidence 55543 34567788888754 45688999999999883 45 345666766655544
No 327
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0056 Score=49.51 Aligned_cols=57 Identities=25% Similarity=0.433 Sum_probs=52.3
Q ss_pred eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d 86 (351)
..+.+|+ ++++.++||++||-=-|+-|+.=..-...+..|+++|++.| +.|+.--++
T Consensus 19 ~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCN 76 (171)
T KOG1651|consen 19 AKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCN 76 (171)
T ss_pred EecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccc
Confidence 7899999 99999999999999999999987777789999999999998 888877776
No 328
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.64 E-value=0.0068 Score=40.83 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=38.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh---HHHHHhcCCceeeecChH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FEEHFKCMPWLAVPFDET 109 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~---~~~~~~~~~~~~~~~~~~ 109 (351)
++.|+.+||++|++....|. ..| +.+..++++.+++. +.+..+....|++..+|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~-------~~~--i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD-------EKG--IPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH-------HTT--BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTE
T ss_pred cEEEEcCCCcCHHHHHHHHH-------HcC--CeeeEcccccchhHHHHHHHHcCCCccCEEEECCE
Confidence 46799999999999887774 334 67888888877533 333345566777776663
No 329
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.64 E-value=0.015 Score=49.90 Aligned_cols=114 Identities=11% Similarity=0.130 Sum_probs=78.8
Q ss_pred cCCCcEecCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh-hhccC
Q 018726 143 EGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL-NHSIM 221 (351)
Q Consensus 143 ~~pdf~~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~-~~~~~ 221 (351)
++|.+.++ ....+.+..|+++||-+...+|..|...+..|+.|..++......++.++.|+--.....++. .++..
T Consensus 9 ~~p~W~i~---~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r 85 (238)
T PF04592_consen 9 PPPPWKIG---GQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRR 85 (238)
T ss_pred CCCCceEC---CchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHh
Confidence 45666651 234567778999999999999999999999999999999875667888888886544433321 22221
Q ss_pred CceeeccCc-h-hhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726 222 PWLAIPYED-R-ARQDLCRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 222 ~~~~~~~~~-d-~~~~~~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
--..+|+.. + ....++..++-.. =-++|+|+=|++++.
T Consensus 86 ~~~~ipVyqq~~~q~dvW~~L~G~k-dD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 86 VSEHIPVYQQDENQPDVWELLNGSK-DDFLIYDRCGRLTYH 125 (238)
T ss_pred CCCCCceecCCccccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence 113355543 2 3456777766443 347899999999987
No 330
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0015 Score=55.47 Aligned_cols=70 Identities=14% Similarity=0.307 Sum_probs=54.7
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
+++.+++.||+.||.+|.++...+..+.+.++. +.+++.+.+. ..+++..+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~-------~~~~k~~a~~---------------------~~eis~~~~ 67 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN-------AQFLKLEAEE---------------------FPEISNLIA 67 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh-------heeeeehhhh---------------------hhHHHHHHH
Confidence 678999999999999999999999888887742 4444444332 468899999
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
+.+.|++.++ ..|+.+.+
T Consensus 68 v~~vp~~~~~-~~~~~v~~ 85 (227)
T KOG0911|consen 68 VEAVPYFVFF-FLGEKVDR 85 (227)
T ss_pred HhcCceeeee-ecchhhhh
Confidence 9999999888 56665554
No 331
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=96.63 E-value=0.00046 Score=43.95 Aligned_cols=31 Identities=35% Similarity=0.747 Sum_probs=24.7
Q ss_pred ceeeccccC-CCceEEEEcCCCC-CCCCccccC
Q 018726 315 AYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 345 (351)
Q Consensus 315 ~~~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~~ 345 (351)
.+.||.|+. ...|-+|+|..|. |||...|-.
T Consensus 4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~ 36 (46)
T PF00569_consen 4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFS 36 (46)
T ss_dssp SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHH
T ss_pred CeECcCCCCCcCcCCeEECCCCCCCchhhHHHh
Confidence 578999999 7789999999999 999999954
No 332
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.61 E-value=0.0073 Score=46.85 Aligned_cols=64 Identities=19% Similarity=0.472 Sum_probs=40.8
Q ss_pred CCCCeEEEEEeC-------CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-----C-hhhHHH--HHhcCCceee
Q 018726 40 CGGKTICLFFSA-------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-----D-ENGFEE--HFKCMPWLAV 104 (351)
Q Consensus 40 ~~gk~v~v~F~a-------~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-----~-~~~~~~--~~~~~~~~~~ 104 (351)
..|++++|.|++ +|||.|+...|.+++..+...+. ..++.+.+.. + .+.++. .++...+||+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~---~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTL 93 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPEN---ARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTL 93 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STT---EEEEEEE---HHHHC-TTSHHHH--CC---SSSEE
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCC---ceEEEEEcCCHHHhCCCCCCceEcceeeeeecceE
Confidence 467899999986 49999999999999988875443 5666666642 1 123555 3556667787
Q ss_pred ec
Q 018726 105 PF 106 (351)
Q Consensus 105 ~~ 106 (351)
..
T Consensus 94 i~ 95 (119)
T PF06110_consen 94 IR 95 (119)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 333
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0026 Score=53.64 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=38.4
Q ss_pred ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (351)
Q Consensus 37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~ 85 (351)
+...+.+.|+|.|+|.|.+.|+.+.|.+.++..+|+..+ ..+-.|++
T Consensus 139 l~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDi 185 (265)
T KOG0914|consen 139 LDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDI 185 (265)
T ss_pred hccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCC--Ccccceee
Confidence 444577899999999999999999999999999998876 34444444
No 334
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0078 Score=59.43 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=66.9
Q ss_pred eeecccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchh
Q 018726 156 ITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA 232 (351)
Q Consensus 156 ~~l~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~ 232 (351)
+..+.-.+|+++|....+||..|..+...= .++++-+++ .+|-|.+|+++ -|..+..
T Consensus 36 f~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~------~FV~IKVDREE--------------RPDvD~~ 95 (667)
T COG1331 36 FAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE------NFVPVKVDREE--------------RPDVDSL 95 (667)
T ss_pred HHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh------CceeeeEChhh--------------ccCHHHH
Confidence 344445689999999999999999987421 233333332 48888888764 2222222
Q ss_pred hHHHHHHcC-cCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHH
Q 018726 233 RQDLCRIFN-IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK 289 (351)
Q Consensus 233 ~~~~~~~~~-i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~ 289 (351)
...+++... --|+|-++|+-|+|+..+... ....-+-...|...+.++.+.+.++
T Consensus 96 Ym~~~q~~tG~GGWPLtVfLTPd~kPFfagT--Y~P~e~r~g~pGf~~lL~~i~~~W~ 151 (667)
T COG1331 96 YMNASQAITGQGGWPLTVFLTPDGKPFFAGT--YFPKEDRYGRPGFKQLLEAIRETWR 151 (667)
T ss_pred HHHHHHHhccCCCCceeEEECCCCceeeeee--ecCCcccCCCcCHHHHHHHHHHHHH
Confidence 334444443 347999999999999987531 1112222223444455555544444
No 335
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.44 E-value=0.0095 Score=41.36 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=35.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHH---hcCCceeeecCh
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF---KCMPWLAVPFDE 108 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~---~~~~~~~~~~~~ 108 (351)
++.|+++||++|.++...+.+ .+ +.+..+++|.+.....++. ....+|++..++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~ 58 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGD 58 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECC
Confidence 577899999999998777664 23 5567777776543333222 344577776655
No 336
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.42 E-value=0.0066 Score=43.62 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=39.0
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
++.|.++|||+|......|.++.. .+.++-++.+.+..+. ...+.+..|..++|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~--------~~~~~~v~~~~~~~~~------------------~~~~~~~~g~~~~P 55 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV--------KPAVVELDQHEDGSEI------------------QDYLQELTGQRTVP 55 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC--------CcEEEEEeCCCChHHH------------------HHHHHHHhCCCCCC
Confidence 477899999999998888866533 3456666665431111 13466677889999
Q ss_pred eEEE
Q 018726 247 ALVL 250 (351)
Q Consensus 247 ~~~l 250 (351)
.+++
T Consensus 56 ~v~~ 59 (82)
T cd03419 56 NVFI 59 (82)
T ss_pred eEEE
Confidence 9743
No 337
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=96.40 E-value=0.0022 Score=41.34 Aligned_cols=29 Identities=31% Similarity=0.742 Sum_probs=26.4
Q ss_pred eeccccC-CCceEEEEcCCCC-CCCCccccC
Q 018726 317 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 345 (351)
Q Consensus 317 ~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~~ 345 (351)
.|+.|++ ...|.+|+|.+|. |||...|-.
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~ 32 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYT 32 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHh
Confidence 5999999 7889999999999 999999954
No 338
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=96.32 E-value=0.0027 Score=40.98 Aligned_cols=29 Identities=31% Similarity=0.744 Sum_probs=25.8
Q ss_pred eecccc-CCCceEEEEcCCCC-CCCCccccC
Q 018726 317 VCDCCK-MRGRFWAFSCDVCN-YDLHPKCVE 345 (351)
Q Consensus 317 ~Cd~C~-~~~~~~~~~c~~~~-~~~~~~c~~ 345 (351)
.||.|+ ....|.+|+|.+|. |||...|-.
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~ 32 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYD 32 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHh
Confidence 599999 57889999999998 999999954
No 339
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.31 E-value=0.015 Score=41.31 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=41.2
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChH
Q 018726 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDET 109 (351)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 109 (351)
|.+++++|+.|..+...++++++.+. +.+-.+++ .+.+.+ ..++.+..|++..||+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~-~~~~~~-~~ygv~~vPalvIng~ 58 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDI-EDFEEI-EKYGVMSVPALVINGK 58 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEET-TTHHHH-HHTT-SSSSEEEETTE
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEc-cCHHHH-HHcCCCCCCEEEECCE
Confidence 34467889999999999999888763 45555565 444455 7788899999988875
No 340
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.29 E-value=0.029 Score=42.29 Aligned_cols=75 Identities=16% Similarity=0.269 Sum_probs=53.5
Q ss_pred CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
.++++|+=.++.||........+++.++... .++.+..+.+-... +.+..+++.|||
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~----~~~~~y~l~v~~~R-------------------~vSn~IAe~~~V 75 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESP----DEIPVYYLDVIEYR-------------------PVSNAIAEDFGV 75 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT--------EEEEEGGGGH-------------------HHHHHHHHHHT-
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCC----ccceEEEEEEEeCc-------------------hhHHHHHHHhCC
Confidence 5788888899999999999888888888775 33778888775432 226799999999
Q ss_pred Cc-eeeEEEECCCCceEecc
Q 018726 243 KG-IPALVLIGPDGKTISTN 261 (351)
Q Consensus 243 ~~-~P~~~lid~~G~v~~~~ 261 (351)
.. -|-+++| ++|++++..
T Consensus 76 ~HeSPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 76 KHESPQVILI-KNGKVVWHA 94 (105)
T ss_dssp ---SSEEEEE-ETTEEEEEE
T ss_pred CcCCCcEEEE-ECCEEEEEC
Confidence 75 8999999 999999863
No 341
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.014 Score=47.23 Aligned_cols=65 Identities=28% Similarity=0.413 Sum_probs=52.8
Q ss_pred cCcce-eeCCCCc-ccccCCCC-CeEEEEEeCCCC-hhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726 23 EGVEF-LLSRQGK-VPLSSCGG-KTICLFFSANWC-RPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (351)
Q Consensus 23 ~~~~~-l~~~~g~-~~~~~~~g-k~v~v~F~a~wC-~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~ 89 (351)
.-+++ |++.+|+ +++....| |+|+++||..-. |-|.+..--|.+-|++++..+ .+++.++.|...
T Consensus 68 ~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s~ 136 (211)
T KOG0855|consen 68 AIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDSA 136 (211)
T ss_pred cCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCchH
Confidence 44555 9999999 99999865 588888887444 449999999999999999877 789999998644
No 342
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=96.25 E-value=0.063 Score=47.55 Aligned_cols=135 Identities=14% Similarity=0.163 Sum_probs=77.3
Q ss_pred hccCCCcEe-cCCCcceeecc-cCCcEEEEEEecC-CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH-HHHHh
Q 018726 141 AIEGRDYVL-SRDHRKITVSE-LAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-KEFDL 216 (351)
Q Consensus 141 g~~~pdf~~-~~~g~~~~l~~-~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~-~~~~~ 216 (351)
..--|++.. ++.|+.+++.+ ++||+.||..+.+ |-..|.. .......++|.......++++-|++.... ..+..
T Consensus 98 AlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~--sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~ 175 (252)
T PF05176_consen 98 ALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVD--SWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLV 175 (252)
T ss_pred CCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHH--HHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHH
Confidence 334688887 88888887754 5899766655443 3222221 12234445554312238999999987654 22221
Q ss_pred h-h-----ccCC---ceeeccCch--hhHHHHHHcCcC--ceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHH
Q 018726 217 N-H-----SIMP---WLAIPYEDR--ARQDLCRIFNIK--GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAE 283 (351)
Q Consensus 217 ~-~-----~~~~---~~~~~~~~d--~~~~~~~~~~i~--~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~ 283 (351)
. + +..+ |..+-+..+ ....+.+.+++. -+..+||+|++|+|++.. .| +-++++++.
T Consensus 176 ~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWag-------sG----~At~~E~~~ 244 (252)
T PF05176_consen 176 KLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAG-------SG----PATPEELES 244 (252)
T ss_pred HHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCc-------cC----CCCHHHHHH
Confidence 1 1 1112 222211111 246788888885 478899999999999984 33 224555666
Q ss_pred HHHHH
Q 018726 284 IETAL 288 (351)
Q Consensus 284 l~~~~ 288 (351)
|.+-+
T Consensus 245 L~k~~ 249 (252)
T PF05176_consen 245 LWKCV 249 (252)
T ss_pred HHHHH
Confidence 64433
No 343
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.24 E-value=0.0085 Score=43.03 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=35.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhH----HHHHhcCCceeeecChH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGF----EEHFKCMPWLAVPFDET 109 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~----~~~~~~~~~~~~~~~~~ 109 (351)
++.|+++|||+|....+.+.++... +.++-++.+.+.... .+..+...+|.+..+|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-------PAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCE
Confidence 4779999999999999888874331 455555555442222 22233445666655654
No 344
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.19 E-value=0.041 Score=37.84 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=39.8
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
++.|.++||++|+.....|.+. ++.+..++++.+.+. ...+.+..+...+|
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~----------~i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P 52 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL----------GIEFEEIDILEDGEL-------------------REELKELSGWPTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------CCcEEEEECCCCHHH-------------------HHHHHHHhCCCCcC
Confidence 5678899999999988877654 244666666654310 24555666778899
Q ss_pred eEEEECCCCceE
Q 018726 247 ALVLIGPDGKTI 258 (351)
Q Consensus 247 ~~~lid~~G~v~ 258 (351)
++++ +|+.+
T Consensus 53 ~~~~---~~~~i 61 (72)
T cd02066 53 QIFI---NGEFI 61 (72)
T ss_pred EEEE---CCEEE
Confidence 8754 45544
No 345
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.16 E-value=0.029 Score=38.85 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=35.1
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
++.|+++||++|......|.+ .++.+..++++.+... ...+.+..++.++|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~----------~~i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP 52 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE----------RGIPFEEVDVDEDPEA-------------------LEELKKLNGYRSVP 52 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH----------CCCCeEEEeCCCCHHH-------------------HHHHHHHcCCcccC
Confidence 568899999999987766644 2344556666654211 12333444778999
Q ss_pred eEEE
Q 018726 247 ALVL 250 (351)
Q Consensus 247 ~~~l 250 (351)
++++
T Consensus 53 ~i~~ 56 (73)
T cd02976 53 VVVI 56 (73)
T ss_pred EEEE
Confidence 9875
No 346
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.12 E-value=0.014 Score=42.58 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=38.8
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc--Cc
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI--KG 244 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i--~~ 244 (351)
++.|..+|||+|.+....|+++..++ .++.+..++++.+..+ ..++.+.++- ..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-----~~i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~t 57 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-----ADFEFRYIDIHAEGIS-------------------KADLEKTVGKPVET 57 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-----CCCcEEEEECCCCHHH-------------------HHHHHHHhCCCCCC
Confidence 57889999999999888887764432 2345555666543211 2345556663 78
Q ss_pred eeeEEE
Q 018726 245 IPALVL 250 (351)
Q Consensus 245 ~P~~~l 250 (351)
+|.+++
T Consensus 58 VP~ifi 63 (86)
T TIGR02183 58 VPQIFV 63 (86)
T ss_pred cCeEEE
Confidence 999854
No 347
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.032 Score=46.67 Aligned_cols=53 Identities=32% Similarity=0.458 Sum_probs=47.0
Q ss_pred ccccCCCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726 35 VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (351)
Q Consensus 35 ~~~~~~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~ 89 (351)
++++++.||.+++.||. +.-.-|......+.+.|+++++.| ++++.+|+|...
T Consensus 26 i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~f 79 (194)
T COG0450 26 ITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVF 79 (194)
T ss_pred EechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHH
Confidence 88899888999999997 555669999999999999999998 899999999754
No 348
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.00 E-value=0.013 Score=40.44 Aligned_cols=55 Identities=22% Similarity=0.128 Sum_probs=34.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHH---hcCCceeeecChH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF---KCMPWLAVPFDET 109 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~---~~~~~~~~~~~~~ 109 (351)
++.|+++||++|++..+.+.+.. +.+..++++.+.+...... ....+|++..++.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGELREELKELSGWPTVPQIFINGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 56788999999999998887632 4566777776654322222 2233455555553
No 349
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=95.86 E-value=0.0027 Score=39.17 Aligned_cols=29 Identities=38% Similarity=0.887 Sum_probs=25.0
Q ss_pred eeeccccCCCceEEEEcCCCC-CCCCccccC
Q 018726 316 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVE 345 (351)
Q Consensus 316 ~~Cd~C~~~~~~~~~~c~~~~-~~~~~~c~~ 345 (351)
|.||.|... .|-+|+|.+|. |||...|-.
T Consensus 1 y~C~~C~~~-~~~r~~C~~C~dfDLC~~C~~ 30 (41)
T cd02337 1 YTCNECKHH-VETRWHCTVCEDYDLCITCYN 30 (41)
T ss_pred CcCCCCCCc-CCCceECCCCcchhhHHHHhC
Confidence 579999884 46999999996 999999965
No 350
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.86 E-value=0.015 Score=51.43 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=50.3
Q ss_pred ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh----------hHHHHHhcCCceeeec
Q 018726 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN----------GFEEHFKCMPWLAVPF 106 (351)
Q Consensus 37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~----------~~~~~~~~~~~~~~~~ 106 (351)
+..+.++.-++.||.+-|+.|..+.|.++.+++++. +.++.||+|.... ...+.++..-+|++.+
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-----i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-----ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 445577888999999999999999999999999874 7899999996421 2344455555666666
No 351
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.86 E-value=0.014 Score=51.45 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=40.8
Q ss_pred ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (351)
Q Consensus 37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~ 87 (351)
+.++.++.=|+.||.+.|+.|..+.|.++.+++++. +.++.||+|.
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-----~~v~~VS~DG 183 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-----LSVIPVSVDG 183 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCC
Confidence 445567788999999999999999999999999874 7899999996
No 352
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.055 Score=43.12 Aligned_cols=117 Identities=14% Similarity=0.245 Sum_probs=73.1
Q ss_pred hhhccCCCcEe-cCCC-------cceeecc-cCCcEEEE-EEecCCChhhHH-hHHHHHHHHHHhhcccCCce-EEEEEe
Q 018726 139 LLAIEGRDYVL-SRDH-------RKITVSE-LAGKTIGL-YFGAHWCPPCRS-FTSQLIEVYNELKTTANHCF-EVVLVS 206 (351)
Q Consensus 139 ~~g~~~pdf~~-~~~g-------~~~~l~~-~~gk~vll-~F~a~~C~~C~~-~~~~l~~l~~~~~~~~~~~~-~vv~v~ 206 (351)
.+|++.|+.++ ...+ ..++..+ ++||-|+| -.-+..-|.|-. .+|.+.+++++|++ .++ .|+.|+
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~---kGVD~I~cVS 80 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKA---KGVDEIYCVS 80 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHH---cCCceEEEEE
Confidence 45777887776 3311 2233333 36765443 333445566766 88999999999987 444 577778
Q ss_pred CCCCH--HHHHhhhccCCceeeccCchhhHHHHHHcCc-----------CceeeEEEECCCCceEecc
Q 018726 207 TDRDH--KEFDLNHSIMPWLAIPYEDRARQDLCRIFNI-----------KGIPALVLIGPDGKTISTN 261 (351)
Q Consensus 207 ~d~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i-----------~~~P~~~lid~~G~v~~~~ 261 (351)
+++.- .+|.+.....+ .+.+..|.+.++.+.+|. ++.....++ .||.|..-+
T Consensus 81 VND~FVm~AWak~~g~~~--~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 81 VNDAFVMNAWAKSQGGEG--NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred eCcHHHHHHHHHhcCCCc--cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence 77532 45555554442 455566667788887653 556677788 788887653
No 353
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.67 E-value=0.022 Score=46.02 Aligned_cols=41 Identities=27% Similarity=0.491 Sum_probs=33.0
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~ 85 (351)
+++++++.|+.++||+|+++.|.+.++..++. + +.+++..+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~---~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-D---VRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-C---ceEEEEeC
Confidence 57899999999999999999999999887653 2 45665544
No 354
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.031 Score=42.66 Aligned_cols=43 Identities=21% Similarity=0.541 Sum_probs=32.9
Q ss_pred CCCeEEEEEeC--------CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726 41 GGKTICLFFSA--------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (351)
Q Consensus 41 ~gk~v~v~F~a--------~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d 86 (351)
+|+.+++.|++ +|||.|.+..|.+.+..+..... +.++.+.+-
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~---~~~v~v~VG 74 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED---VHFVHVYVG 74 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc---eEEEEEEec
Confidence 67789999987 59999999999999988855443 455555553
No 355
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=95.55 E-value=0.15 Score=42.62 Aligned_cols=151 Identities=14% Similarity=0.112 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHH-HHHHhhh-hhhhHHhhhcccccccc
Q 018726 59 TFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETL-HKKLRIR-KRREELKAIDDSKRQGG 134 (351)
Q Consensus 59 ~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~-~~~l~~~-~~~~~l~~~~~~~~~~~ 134 (351)
.....+.++|+.+.+. +.+..+. +. .+.+.++.-. |++.. .++. ...+.+. ...+.+..++...
T Consensus 7 ~~~~~f~~~A~~~~~~---~~F~~~~---~~-~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~---- 74 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGD---YQFGVTF---NE-ELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN---- 74 (184)
T ss_dssp HHHHHHHHHHHHHTTT---SEEEEEE----H-HHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCcCC---cEEEEEc---HH-HHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh----
Confidence 4566888999998866 4454444 22 2333344322 55554 3222 2233332 3455555554432
Q ss_pred chHHhhhccCCCcEecCCCcceeecccCCcE-EEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018726 135 KLEQLLAIEGRDYVLSRDHRKITVSELAGKT-IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 213 (351)
Q Consensus 135 ~~~~~~g~~~pdf~~~~~g~~~~l~~~~gk~-vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~ 213 (351)
..|-+. ..+...+..---.++. +++.|..............+.+++++++ ..+.++.+..+..
T Consensus 75 --------~~P~v~-~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~~f~~~d~~~~--- 138 (184)
T PF13848_consen 75 --------SFPLVP-ELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFK----GKINFVYVDADDF--- 138 (184)
T ss_dssp --------SSTSCE-EESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT----TTSEEEEEETTTT---
T ss_pred --------cccccc-ccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC----CeEEEEEeehHHh---
Confidence 223333 2223222221123444 7777766655567777778888888776 5678888887743
Q ss_pred HHhhhccCCceeeccCchhhHHHHHHcCcC--ceeeEEEECCCCce
Q 018726 214 FDLNHSIMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGKT 257 (351)
Q Consensus 214 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~--~~P~~~lid~~G~v 257 (351)
..+.+.||+. .+|++++++.....
T Consensus 139 --------------------~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 139 --------------------PRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp --------------------HHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred --------------------HHHHHHcCCCCccCCEEEEEECCCCc
Confidence 5677899998 89999999855443
No 356
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=95.55 E-value=0.054 Score=46.01 Aligned_cols=110 Identities=19% Similarity=0.388 Sum_probs=75.5
Q ss_pred CCcEecCCCcceeeccc-CCcEEEE--EEe-----cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726 145 RDYVLSRDHRKITVSEL-AGKTIGL--YFG-----AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 216 (351)
Q Consensus 145 pdf~~~~~g~~~~l~~~-~gk~vll--~F~-----a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 216 (351)
.++.++....+++|+++ .|+-.|| .|. ...|+-|-..+..++.....+.+ .++.++.|+-. ..+++..
T Consensus 47 ~~Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~---rd~tfa~vSra-P~~~i~a 122 (211)
T PF05988_consen 47 KDYVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHA---RDTTFAVVSRA-PLEKIEA 122 (211)
T ss_pred CCeEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHh---CCceEEEEeCC-CHHHHHH
Confidence 45777444445888886 6664333 332 45799999999999777777776 77889888765 5688888
Q ss_pred hhccCCceeeccCchhhHHHHHHcCc-----CceeeEEEECCCC-ceEe
Q 018726 217 NHSIMPWLAIPYEDRARQDLCRIFNI-----KGIPALVLIGPDG-KTIS 259 (351)
Q Consensus 217 ~~~~~~~~~~~~~~d~~~~~~~~~~i-----~~~P~~~lid~~G-~v~~ 259 (351)
+.+.++|. +|........+...|++ ...|.+-++=++| +|..
T Consensus 123 fk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vfh 170 (211)
T PF05988_consen 123 FKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFH 170 (211)
T ss_pred HHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEE
Confidence 99999987 77665555666777776 4566554443544 4443
No 357
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.46 E-value=0.068 Score=38.19 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=38.0
Q ss_pred cEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcC
Q 018726 164 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 243 (351)
Q Consensus 164 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~ 243 (351)
+.-++.|..+||++|.+....|++ .++.+..++++.+.. ...+.+..|..
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~----------~gi~y~~idi~~~~~--------------------~~~~~~~~g~~ 56 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKE----------KGYDFEEIPLGNDAR--------------------GRSLRAVTGAT 56 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHH----------cCCCcEEEECCCChH--------------------HHHHHHHHCCC
Confidence 445678999999999998777743 234444556654421 13455567889
Q ss_pred ceeeEEE
Q 018726 244 GIPALVL 250 (351)
Q Consensus 244 ~~P~~~l 250 (351)
.+|.+++
T Consensus 57 ~vP~i~i 63 (79)
T TIGR02190 57 TVPQVFI 63 (79)
T ss_pred CcCeEEE
Confidence 9999864
No 358
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.43 E-value=0.092 Score=36.82 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=34.8
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcC-ce
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-GI 245 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~-~~ 245 (351)
+..|+.++||+|......|++ .++.+-.++++.+.+. ...+.+..+.. .+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~----------~~i~~~~i~i~~~~~~-------------------~~~~~~~~~~~~~v 52 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK----------KGVDYEEIDVDGDPAL-------------------REEMINRSGGRRTV 52 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH----------CCCcEEEEECCCCHHH-------------------HHHHHHHhCCCCcc
Confidence 467889999999998776654 2334555566544211 23455566766 89
Q ss_pred eeEEE
Q 018726 246 PALVL 250 (351)
Q Consensus 246 P~~~l 250 (351)
|.+++
T Consensus 53 P~v~i 57 (75)
T cd03418 53 PQIFI 57 (75)
T ss_pred CEEEE
Confidence 97653
No 359
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.40 E-value=0.028 Score=41.02 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=38.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHhc--CCceeeecChH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFKC--MPWLAVPFDET 109 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~~--~~~~~~~~~~~ 109 (351)
++.|..+||++|.+....+.++..... + +.+..++++.+. +.+.+..+. ...|++..+++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~--i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~ 66 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--D--FEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEK 66 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--C--CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCE
Confidence 567889999999999988887654321 2 456666666433 224444443 56688866654
No 360
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.36 E-value=0.11 Score=36.30 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=33.9
Q ss_pred EEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceee
Q 018726 168 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA 247 (351)
Q Consensus 168 l~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 247 (351)
..|..++||+|+.....|++ .++.+-.++++.+... ...+ +..|...+|.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~----------~~i~~~~~di~~~~~~-------------------~~~~-~~~g~~~vP~ 51 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE----------HGIAFEEINIDEQPEA-------------------IDYV-KAQGFRQVPV 51 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH----------CCCceEEEECCCCHHH-------------------HHHH-HHcCCcccCE
Confidence 46788999999998777753 3345555666654311 1222 2348888999
Q ss_pred EEE
Q 018726 248 LVL 250 (351)
Q Consensus 248 ~~l 250 (351)
+++
T Consensus 52 v~~ 54 (72)
T TIGR02194 52 IVA 54 (72)
T ss_pred EEE
Confidence 755
No 361
>PHA03050 glutaredoxin; Provisional
Probab=95.36 E-value=0.044 Score=41.89 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=36.6
Q ss_pred EEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCce
Q 018726 166 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI 245 (351)
Q Consensus 166 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~ 245 (351)
-++.|..+|||+|......|++..-+. ..++++-|.-..+..+ ....+.+.-|...+
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~-----~~~~~i~i~~~~~~~~------------------~~~~l~~~tG~~tV 70 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKR-----GAYEIVDIKEFKPENE------------------LRDYFEQITGGRTV 70 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCc-----CCcEEEECCCCCCCHH------------------HHHHHHHHcCCCCc
Confidence 367899999999998877665542111 1344444332111111 12466666788899
Q ss_pred eeEEE
Q 018726 246 PALVL 250 (351)
Q Consensus 246 P~~~l 250 (351)
|.+++
T Consensus 71 P~IfI 75 (108)
T PHA03050 71 PRIFF 75 (108)
T ss_pred CEEEE
Confidence 99855
No 362
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.36 E-value=0.04 Score=44.48 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=28.1
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhh
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELK 193 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~ 193 (351)
.++++++.|+..+||+|+.+.+.+.++..++.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 36899999999999999999999998877653
No 363
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.19 E-value=0.082 Score=39.69 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=16.8
Q ss_pred EEEEecCCChhhHHhHHHHHH
Q 018726 167 GLYFGAHWCPPCRSFTSQLIE 187 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~ 187 (351)
++.|..+|||+|.+....|.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~ 30 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT 30 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 568889999999987765544
No 364
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.18 E-value=0.0021 Score=54.89 Aligned_cols=78 Identities=14% Similarity=0.306 Sum_probs=49.9
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK 118 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~ 118 (351)
+|. +++.|+|+||+.|....|++...+.--.+.+ +++..|.+..+.--..++ -+...|++.. ||. .+++.+..
T Consensus 39 ~ge-wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDvt~npgLsGRF-~vtaLptIYHvkDGe-FrrysgaR 113 (248)
T KOG0913|consen 39 TGE-WMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDVTTNPGLSGRF-LVTALPTIYHVKDGE-FRRYSGAR 113 (248)
T ss_pred chH-HHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEEEeccccceee-EEEecceEEEeeccc-cccccCcc
Confidence 453 6899999999999999999999888655544 666666665443223333 3344567766 554 44555544
Q ss_pred hhhHH
Q 018726 119 RREEL 123 (351)
Q Consensus 119 ~~~~l 123 (351)
.-+.+
T Consensus 114 dk~df 118 (248)
T KOG0913|consen 114 DKNDF 118 (248)
T ss_pred cchhH
Confidence 43333
No 365
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.11 E-value=0.1 Score=42.54 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=38.5
Q ss_pred ecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018726 158 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208 (351)
Q Consensus 158 l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d 208 (351)
+-+..++++|+.|+...||+|..+.+.+.++.+++-+ ..++.++...+-
T Consensus 7 ~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~--~~~v~~~~~~~~ 55 (162)
T PF13462_consen 7 IGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYID--PGKVKFVFRPVP 55 (162)
T ss_dssp ES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TTTEEEEEEESS
T ss_pred ecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC--CCceEEEEEEcc
Confidence 4444578999999999999999999999999999821 267888888763
No 366
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.10 E-value=0.13 Score=36.00 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=36.1
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
++.|..+||+.|++....|++ .++.+..++++.+... ..++.+..+-..+|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~----------~gi~~~~~di~~~~~~-------------------~~el~~~~g~~~vP 53 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE----------KGLPYVEINIDIFPER-------------------KAELEERTGSSVVP 53 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH----------CCCceEEEECCCCHHH-------------------HHHHHHHhCCCCcC
Confidence 457888999999998776654 3344556666654311 24566666777889
Q ss_pred eEEE
Q 018726 247 ALVL 250 (351)
Q Consensus 247 ~~~l 250 (351)
.+++
T Consensus 54 ~v~i 57 (73)
T cd03027 54 QIFF 57 (73)
T ss_pred EEEE
Confidence 8754
No 367
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.00 E-value=0.028 Score=40.14 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=34.9
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
+..|+.+|||+|......|++. ++.+-.++++.+... ..++.+..|...+|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~----------~i~~~~~di~~~~~~-------------------~~~~~~~~g~~~vP 51 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK----------GVTFTEIRVDGDPAL-------------------RDEMMQRSGRRTVP 51 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc----------CCCcEEEEecCCHHH-------------------HHHHHHHhCCCCcC
Confidence 3578899999999988777542 233444455544211 23455566788899
Q ss_pred eEEE
Q 018726 247 ALVL 250 (351)
Q Consensus 247 ~~~l 250 (351)
++++
T Consensus 52 ~i~i 55 (79)
T TIGR02181 52 QIFI 55 (79)
T ss_pred EEEE
Confidence 9744
No 368
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.90 E-value=0.094 Score=42.82 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=40.7
Q ss_pred cccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726 36 PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (351)
Q Consensus 36 ~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~ 89 (351)
.+.....+++|+.|+...|++|..+.+.+.++.+++-+.| .+.+++..+-.+.
T Consensus 6 ~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~~~~ 58 (162)
T PF13462_consen 6 TIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVPLDK 58 (162)
T ss_dssp EES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESSSSH
T ss_pred eecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEccccc
Confidence 3445578999999999999999999999999999983332 3888888875443
No 369
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.90 E-value=0.051 Score=38.71 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=36.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH---HhcCCceeeecChH
Q 018726 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH---FKCMPWLAVPFDET 109 (351)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~---~~~~~~~~~~~~~~ 109 (351)
..|+.+||++|.+....+++ .| +.+..++++.+.....+. .....+|++..+|+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~--i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~ 58 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KG--VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDV 58 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cC--CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 56888999999998888874 23 456667777665433333 33455677766664
No 370
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=94.85 E-value=0.26 Score=38.05 Aligned_cols=63 Identities=17% Similarity=0.485 Sum_probs=51.2
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
..|.++|-|.-.|-|.|.++-..|.++++... .=..|..+.+|. -..+-+.|+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs----nfa~Iylvdide-----------------------V~~~~~~~~ 74 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVS----NFAVIYLVDIDE-----------------------VPDFVKMYE 74 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHh----hceEEEEEecch-----------------------hhhhhhhhc
Confidence 45899999999999999999999999999886 334566666664 367788899
Q ss_pred cCceeeEEEE
Q 018726 242 IKGIPALVLI 251 (351)
Q Consensus 242 i~~~P~~~li 251 (351)
+...|+++++
T Consensus 75 l~~p~tvmfF 84 (142)
T KOG3414|consen 75 LYDPPTVMFF 84 (142)
T ss_pred ccCCceEEEE
Confidence 9998987776
No 371
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.82 E-value=0.077 Score=37.20 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=36.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh---HHHHHhcCCceeeecChH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FEEHFKCMPWLAVPFDET 109 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~---~~~~~~~~~~~~~~~~~~ 109 (351)
++.|..+||+.|++....|++ .| +.+..++++.+.+. +.+.......|++.++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPERKAELEERTGSSVVPQIFFNEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 456888999999998877775 33 56777788765543 333333444577766664
No 372
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=94.81 E-value=0.012 Score=52.96 Aligned_cols=32 Identities=34% Similarity=0.719 Sum_probs=29.3
Q ss_pred ceeeccccC-CCceEEEEcCCCC-CCCCccccCc
Q 018726 315 AYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVEG 346 (351)
Q Consensus 315 ~~~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~~~ 346 (351)
.-.||.|.. ...|-+|+|.+|. |||+..|-.+
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~ 185 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAG 185 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhcC
Confidence 468999999 8999999999998 9999999664
No 373
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.79 E-value=0.061 Score=38.44 Aligned_cols=56 Identities=16% Similarity=0.241 Sum_probs=35.9
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh--HHHHHhcCCceeeecChH
Q 018726 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG--FEEHFKCMPWLAVPFDET 109 (351)
Q Consensus 45 v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~--~~~~~~~~~~~~~~~~~~ 109 (351)
-++.|+.+||++|++....|.+ .| +.+..++++.+... +.+.......|.+..+|.
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~-------~g--i~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~ 66 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKE-------KG--YDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGK 66 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHH-------cC--CCcEEEECCCChHHHHHHHHHCCCCcCeEEECCE
Confidence 3668999999999998888763 23 45556677655332 333233455677766654
No 374
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.78 E-value=0.081 Score=37.10 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=36.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHH---hcC-CceeeecChH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF---KCM-PWLAVPFDET 109 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~---~~~-~~~~~~~~~~ 109 (351)
+..|+.+||++|.+....|++ .+ +.+..++++.+.+...+.. ... .+|.+..+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCE
Confidence 467888999999998877765 23 5566777776644333332 333 5677766654
No 375
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=94.65 E-value=0.022 Score=37.26 Aligned_cols=35 Identities=26% Similarity=0.558 Sum_probs=28.1
Q ss_pred CCceeeccccCCC---ceEEEEcCCCCCCCCccccCcc
Q 018726 313 AKAYVCDCCKMRG---RFWAFSCDVCNYDLHPKCVEGI 347 (351)
Q Consensus 313 ~~~~~Cd~C~~~~---~~~~~~c~~~~~~~~~~c~~~~ 347 (351)
..+..|+.|++.. ..-.|+|..|++-.|..|....
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence 4667999999975 6779999999999999998743
No 376
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.61 E-value=0.016 Score=49.59 Aligned_cols=69 Identities=22% Similarity=0.410 Sum_probs=51.2
Q ss_pred EEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCc
Q 018726 165 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG 244 (351)
Q Consensus 165 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 244 (351)
-+++.|+++|||.|....|.+...+.--.+ -++.+..|.+-.. .-+.-+|-+.+
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~d---L~v~va~VDvt~n-----------------------pgLsGRF~vta 94 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLD---LGVKVAKVDVTTN-----------------------PGLSGRFLVTA 94 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCC---CceeEEEEEEEec-----------------------cccceeeEEEe
Confidence 577899999999999999998777554332 4555555554432 35666788899
Q ss_pred eeeEEEECCCCceEec
Q 018726 245 IPALVLIGPDGKTIST 260 (351)
Q Consensus 245 ~P~~~lid~~G~v~~~ 260 (351)
.||+|=+ ++|..+..
T Consensus 95 LptIYHv-kDGeFrry 109 (248)
T KOG0913|consen 95 LPTIYHV-KDGEFRRY 109 (248)
T ss_pred cceEEEe-eccccccc
Confidence 9999999 89987643
No 377
>PHA03050 glutaredoxin; Provisional
Probab=94.25 E-value=0.27 Score=37.52 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=33.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC--Chhh----HHHHHhcCCceeeecChH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH--DENG----FEEHFKCMPWLAVPFDET 109 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~--~~~~----~~~~~~~~~~~~~~~~~~ 109 (351)
++.|..+|||+|.+....|.+. +-... .+..+++|. +... +.+.......|.+.++|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~----~i~~~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~ 78 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF----SFKRG--AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKT 78 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc----CCCcC--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCE
Confidence 6679999999999988777653 21111 344556654 2222 333333344677766554
No 378
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.13 Score=35.74 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=44.5
Q ss_pred EEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhc---cCCceeeccCchhhHHHHHHcCcCc
Q 018726 168 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS---IMPWLAIPYEDRARQDLCRIFNIKG 244 (351)
Q Consensus 168 l~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~i~~ 244 (351)
..|++..||.|......|.++. +..=.|.+-.+-+.+++|++ +++ .-+-.+..|--|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~----------v~yd~VeIt~Sm~NlKrFl~lRDs~~----------~Fd~vk~~gyiG 64 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN----------VDYDFVEITESMANLKRFLHLRDSRP----------EFDEVKSNGYIG 64 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC----------CCceeeehhhhhhhHHHHHhhhccch----------hHHhhhhcCccc
Confidence 5789999999987766554442 22333444455556666655 333 234456778889
Q ss_pred eeeEEEECCCCceEe
Q 018726 245 IPALVLIGPDGKTIS 259 (351)
Q Consensus 245 ~P~~~lid~~G~v~~ 259 (351)
+|.+.+ .+|++|-
T Consensus 65 IPall~--~d~~vVl 77 (85)
T COG4545 65 IPALLT--DDGKVVL 77 (85)
T ss_pred ceEEEe--CCCcEEE
Confidence 999776 6788764
No 379
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.01 E-value=0.13 Score=35.89 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=34.7
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHH--hcCCceeeecChH
Q 018726 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF--KCMPWLAVPFDET 109 (351)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~--~~~~~~~~~~~~~ 109 (351)
..|..++|++|++....|.+ .| +.+..++++.+.+...+.. .....|.+..+|+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 46778999999998888864 33 5677778876654433332 2234566655553
No 380
>PRK10824 glutaredoxin-4; Provisional
Probab=93.93 E-value=0.22 Score=38.39 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=27.2
Q ss_pred CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726 52 NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (351)
Q Consensus 52 ~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~ 106 (351)
||||.|++....|.++ + +.+..++++.+.+......+..+|+|+|-
T Consensus 28 p~Cpyc~~ak~lL~~~-------~--i~~~~idi~~d~~~~~~l~~~sg~~TVPQ 73 (115)
T PRK10824 28 PSCGFSAQAVQALSAC-------G--ERFAYVDILQNPDIRAELPKYANWPTFPQ 73 (115)
T ss_pred CCCchHHHHHHHHHHc-------C--CCceEEEecCCHHHHHHHHHHhCCCCCCe
Confidence 5999999988777663 2 33445677766443222233345555554
No 381
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.92 E-value=0.17 Score=36.47 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=34.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHH--hcCCceeeecCh
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF--KCMPWLAVPFDE 108 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~--~~~~~~~~~~~~ 108 (351)
+..|..+||++|.+....|.+ .| +.+..++++.+.+...+.. .....|++..++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~g--I~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~ 58 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RG--FDFEMINVDRVPEAAETLRAQGFRQLPVVIAGD 58 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CC--CceEEEECCCCHHHHHHHHHcCCCCcCEEEECC
Confidence 567888999999998877743 44 6677788887654433332 223346665544
No 382
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.91 E-value=0.14 Score=35.71 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=35.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh--hHHHHHhcCCceeeecChH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEHFKCMPWLAVPFDET 109 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~--~~~~~~~~~~~~~~~~~~~ 109 (351)
++.|..+||+.|.+....+.+ .| +.+..++++.+.. .+.+......+|.+..+|+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~ 59 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCChhHHHHHHHhCCCCcCeEEECCE
Confidence 567888999999998777764 23 4566667765542 2333334556788766664
No 383
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.90 E-value=0.1 Score=36.41 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=34.9
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
++.|..+|||.|.+....|++ .++.+..++++.+.. ...+.+..|...+|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~----------~~i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP 52 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE----------NGISYEEIPLGKDIT--------------------GRSLRAVTGAMTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----------cCCCcEEEECCCChh--------------------HHHHHHHhCCCCcC
Confidence 567889999999998766653 234455556654320 13455556888999
Q ss_pred eEE
Q 018726 247 ALV 249 (351)
Q Consensus 247 ~~~ 249 (351)
.++
T Consensus 53 ~if 55 (72)
T cd03029 53 QVF 55 (72)
T ss_pred eEE
Confidence 974
No 384
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.88 E-value=0.37 Score=34.66 Aligned_cols=54 Identities=13% Similarity=0.320 Sum_probs=35.0
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
+..|..+||++|......|.+ .++.+-.++++.+.+. ....+..|...+|
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~----------~gI~~~~idi~~~~~~--------------------~~~~~~~g~~~vP 52 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES----------RGFDFEMINVDRVPEA--------------------AETLRAQGFRQLP 52 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH----------CCCceEEEECCCCHHH--------------------HHHHHHcCCCCcC
Confidence 457888999999987666632 4456666777754311 1122334778899
Q ss_pred eEEE
Q 018726 247 ALVL 250 (351)
Q Consensus 247 ~~~l 250 (351)
++++
T Consensus 53 vv~i 56 (81)
T PRK10329 53 VVIA 56 (81)
T ss_pred EEEE
Confidence 9865
No 385
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.77 E-value=0.087 Score=43.81 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=34.5
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~ 85 (351)
.+++.++.|+...||+|+.+.+.+.++.+++.++ +.+..+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEcCC
Confidence 6899999999999999999999999999987443 45544443
No 386
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.62 E-value=0.12 Score=43.81 Aligned_cols=93 Identities=23% Similarity=0.437 Sum_probs=64.0
Q ss_pred CCcEecCCCcceeeccc-CCcEEEE---EEecC----CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726 145 RDYVLSRDHRKITVSEL-AGKTIGL---YFGAH----WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 216 (351)
Q Consensus 145 pdf~~~~~g~~~~l~~~-~gk~vll---~F~a~----~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 216 (351)
.++.++....+.+|+++ .||-.|| +++++ .|+-|-..+..+......+.. .++.++.|+-- ..+++..
T Consensus 53 K~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~---~dv~lv~VsRA-Pl~~l~~ 128 (247)
T COG4312 53 KDYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEH---HDVTLVAVSRA-PLEELVA 128 (247)
T ss_pred ceeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhh---cCceEEEEecC-cHHHHHH
Confidence 35666444457788876 5664443 23444 699999999998877777776 77889888754 4678888
Q ss_pred hhccCCceeeccCchhhHHHHHHcCc
Q 018726 217 NHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 217 ~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
+.+.|+|. +|........+.+.|++
T Consensus 129 ~k~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 129 YKRRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred HHHhcCCc-ceeEeccCccccccccc
Confidence 88888886 66655444555566644
No 387
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=93.55 E-value=0.07 Score=46.26 Aligned_cols=64 Identities=9% Similarity=0.253 Sum_probs=52.4
Q ss_pred cccCcce-eeCCCCc--ccccCCC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726 21 ASEGVEF-LLSRQGK--VPLSSCG--GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (351)
Q Consensus 21 ~~~~~~~-l~~~~g~--~~~~~~~--gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~ 87 (351)
.+..+++ ++..+|+ ..+.++. ++|++|+|.+-.||+=+.-.+.+++++++|.+. ++++.|.+.+
T Consensus 76 G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~---adFl~VYI~E 144 (237)
T PF00837_consen 76 GGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV---ADFLIVYIEE 144 (237)
T ss_pred CCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh---hheehhhHhh
Confidence 4455666 7788887 6677763 899999999999999999999999999999987 5677777664
No 388
>PRK10638 glutaredoxin 3; Provisional
Probab=93.50 E-value=0.4 Score=34.48 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=37.3
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
+..|..+||++|++....|++. ++.+..++++.+.+. ...+.+..|...+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~----------gi~y~~~dv~~~~~~-------------------~~~l~~~~g~~~vP 54 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK----------GVSFQEIPIDGDAAK-------------------REEMIKRSGRTTVP 54 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc----------CCCcEEEECCCCHHH-------------------HHHHHHHhCCCCcC
Confidence 4577889999999887766542 233444566544211 23455666788899
Q ss_pred eEEEECCCCceE
Q 018726 247 ALVLIGPDGKTI 258 (351)
Q Consensus 247 ~~~lid~~G~v~ 258 (351)
++++ +|+.+
T Consensus 55 ~i~~---~g~~i 63 (83)
T PRK10638 55 QIFI---DAQHI 63 (83)
T ss_pred EEEE---CCEEE
Confidence 7744 35544
No 389
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.28 Score=39.49 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=52.7
Q ss_pred cCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecC---------------ChhhHHHHHhcC
Q 018726 38 SSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDH---------------DENGFEEHFKCM 99 (351)
Q Consensus 38 ~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~---------------~~~~~~~~~~~~ 99 (351)
..-.+|..++.|..+.|+.|.++...+ .++.+-+++. +.++.+++.. ..+..++.+++.
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vr 114 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVR 114 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcceEeecCceeeeecHHHHHHHhccc
Confidence 345899999999999999999998765 4455555554 6666666532 122467778888
Q ss_pred Cceeeec-C--hHHHHHHhh
Q 018726 100 PWLAVPF-D--ETLHKKLRI 116 (351)
Q Consensus 100 ~~~~~~~-~--~~~~~~l~~ 116 (351)
++|++.| + |+....+-|
T Consensus 115 stPtfvFfdk~Gk~Il~lPG 134 (182)
T COG2143 115 STPTFVFFDKTGKTILELPG 134 (182)
T ss_pred cCceEEEEcCCCCEEEecCC
Confidence 9999998 3 444444444
No 390
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.37 E-value=0.43 Score=35.62 Aligned_cols=58 Identities=21% Similarity=0.183 Sum_probs=34.6
Q ss_pred cEEEEEEe----cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726 164 KTIGLYFG----AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 239 (351)
Q Consensus 164 k~vll~F~----a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 239 (351)
+.|+|+-. .+|||+|......|.+. ++.+..++++.+.+. ...+.+.
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------~i~~~~~di~~~~~~-------------------~~~l~~~ 62 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC----------GVPFAYVNVLEDPEI-------------------RQGIKEY 62 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc----------CCCEEEEECCCCHHH-------------------HHHHHHH
Confidence 44555543 38999999877666442 233445566544211 2355566
Q ss_pred cCcCceeeEEE
Q 018726 240 FNIKGIPALVL 250 (351)
Q Consensus 240 ~~i~~~P~~~l 250 (351)
.|...+|.+++
T Consensus 63 tg~~tvP~vfi 73 (97)
T TIGR00365 63 SNWPTIPQLYV 73 (97)
T ss_pred hCCCCCCEEEE
Confidence 67788998864
No 391
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.35 E-value=0.2 Score=41.86 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=56.8
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
+..-||+-||-+.-..|+-+-..|..+++.+- ...+|.|+.... .-+..+++
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-----eTrFikvnae~~-----------------------PFlv~kL~ 134 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-----ETRFIKVNAEKA-----------------------PFLVTKLN 134 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhcc-----cceEEEEecccC-----------------------ceeeeeee
Confidence 45678899999988889999999999988774 456777776653 46788899
Q ss_pred cCceeeEEEECCCCceEec
Q 018726 242 IKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~ 260 (351)
|..+|++.++ ++|+.+.+
T Consensus 135 IkVLP~v~l~-k~g~~~D~ 152 (211)
T KOG1672|consen 135 IKVLPTVALF-KNGKTVDY 152 (211)
T ss_pred eeEeeeEEEE-EcCEEEEE
Confidence 9999999999 78876654
No 392
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.33 E-value=0.11 Score=38.22 Aligned_cols=59 Identities=19% Similarity=0.225 Sum_probs=35.4
Q ss_pred CcEEEEEEec----CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726 163 GKTIGLYFGA----HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 238 (351)
Q Consensus 163 gk~vll~F~a----~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 238 (351)
++.|+|+--+ +|||+|......|.+. ++.+..++++.+.+ ....+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----------~i~y~~idv~~~~~-------------------~~~~l~~ 57 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL----------GVDFGTFDILEDEE-------------------VRQGLKE 57 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----------CCCeEEEEcCCCHH-------------------HHHHHHH
Confidence 4455555433 6999999877666543 23344455554321 1246666
Q ss_pred HcCcCceeeEEE
Q 018726 239 IFNIKGIPALVL 250 (351)
Q Consensus 239 ~~~i~~~P~~~l 250 (351)
..|...+|.+++
T Consensus 58 ~~g~~tvP~vfi 69 (90)
T cd03028 58 YSNWPTFPQLYV 69 (90)
T ss_pred HhCCCCCCEEEE
Confidence 678888999744
No 393
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.15 E-value=0.45 Score=36.75 Aligned_cols=63 Identities=13% Similarity=0.263 Sum_probs=47.2
Q ss_pred CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeee
Q 018726 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (351)
Q Consensus 39 ~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~ 105 (351)
+-+.|.|+|-|.-+|-+.|..+...+.+++++..+- +.|..+.+|.-. .+.+.++-..-|++-
T Consensus 20 ~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV~-~~~~~~~l~~p~tvm 82 (142)
T KOG3414|consen 20 STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEVP-DFVKMYELYDPPTVM 82 (142)
T ss_pred cccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchhh-hhhhhhcccCCceEE
Confidence 346899999999999999999999999999998765 567777777433 455555544333333
No 394
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=93.14 E-value=0.28 Score=37.98 Aligned_cols=66 Identities=6% Similarity=0.126 Sum_probs=41.9
Q ss_pred ccccCCCCCeEEEEEeCC----CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh---hHHHHHhcCCceeeec
Q 018726 35 VPLSSCGGKTICLFFSAN----WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFEEHFKCMPWLAVPF 106 (351)
Q Consensus 35 ~~~~~~~gk~v~v~F~a~----wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~---~~~~~~~~~~~~~~~~ 106 (351)
+..+.-++|+++|+|+++ ||..|+.... =.++.+-++.+ +++...|.+.. .++..++...+|++.+
T Consensus 10 l~~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~-----fv~w~~dv~~~eg~~la~~l~~~~~P~~~~ 82 (116)
T cd02991 10 LNDAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTR-----MLFWACSVAKPEGYRVSQALRERTYPFLAM 82 (116)
T ss_pred HHHHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcC-----EEEEEEecCChHHHHHHHHhCCCCCCEEEE
Confidence 334456899999999999 8888977642 12333333332 55555554322 3666777777777776
No 395
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=93.11 E-value=0.065 Score=33.71 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=27.1
Q ss_pred eeeccccCCCceEEEEcCCCC-CCCCccccC
Q 018726 316 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVE 345 (351)
Q Consensus 316 ~~Cd~C~~~~~~~~~~c~~~~-~~~~~~c~~ 345 (351)
|.|+.|+.....-+|||..+. |+|.+.|=.
T Consensus 1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~ 31 (45)
T cd02336 1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQ 31 (45)
T ss_pred CcccCCCCccCceEEEecCCCccccChHHHh
Confidence 679999999999999999988 999999944
No 396
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=92.99 E-value=0.24 Score=37.16 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=33.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh--hHHHHHh----cCCceeeecChH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEHFK----CMPWLAVPFDET 109 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~--~~~~~~~----~~~~~~~~~~~~ 109 (351)
++.|..+|||+|.+....+.+ .+ +.+..+++|.+.+ ...+.+. ...+|.+..+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~-------~~--i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT-------LG--VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC--CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCE
Confidence 567889999999998876654 23 3455677765432 2333332 233466655654
No 397
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=0.27 Score=40.29 Aligned_cols=60 Identities=27% Similarity=0.284 Sum_probs=49.7
Q ss_pred eeCCCCc-ccccCCCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726 28 LLSRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~ 89 (351)
+++..-+ ++++++.||+|++.||. ++---|....-.+.+.+.++++.+ -+++++++|...
T Consensus 18 VVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS~f 79 (196)
T KOG0852|consen 18 VVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDSVF 79 (196)
T ss_pred EEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccchh
Confidence 4454445 89999999999999995 555568899999999999999887 789999999754
No 398
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=92.77 E-value=0.62 Score=36.47 Aligned_cols=58 Identities=12% Similarity=0.359 Sum_probs=43.9
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc-CCc
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC-MPW 101 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~-~~~ 101 (351)
-+.|+|+|-|.-+|-+.|.++...+.+++++.+.- ..|..++++.-. .+.+.++. -|.
T Consensus 18 e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~Vp-dfn~~yel~dP~ 76 (133)
T PF02966_consen 18 EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEVP-DFNQMYELYDPC 76 (133)
T ss_dssp -SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTTH-CCHHHTTS-SSE
T ss_pred cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccch-hhhcccccCCCe
Confidence 36899999999999999999999999999998765 567777777443 35555553 443
No 399
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=92.64 E-value=2.4 Score=34.29 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=10.7
Q ss_pred CChhhHHhHHHHHH
Q 018726 174 WCPPCRSFTSQLIE 187 (351)
Q Consensus 174 ~C~~C~~~~~~l~~ 187 (351)
+|++|......|++
T Consensus 15 t~~~C~~ak~iL~~ 28 (147)
T cd03031 15 TFEDCNNVRAILES 28 (147)
T ss_pred cChhHHHHHHHHHH
Confidence 89999887666644
No 400
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=92.63 E-value=0.4 Score=40.14 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=26.2
Q ss_pred EEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018726 169 YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207 (351)
Q Consensus 169 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~ 207 (351)
.|..|.|+.|-...|.+.++..+++ ..+.+-.|..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~----~~i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYG----NKIEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-----TTEEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcC----CcEEEEEEEc
Confidence 6889999999999999999999998 4566555553
No 401
>PRK10638 glutaredoxin 3; Provisional
Probab=92.63 E-value=0.28 Score=35.29 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=33.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh---cCCceeeecChH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK---CMPWLAVPFDET 109 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~---~~~~~~~~~~~~ 109 (351)
++.|..+||++|++....+.+ .| +.+..++++.+.+...+..+ ....|++..+|.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~g--i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KG--VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cC--CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 456778999999998877774 23 45666777765433333333 233566655543
No 402
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=92.56 E-value=0.49 Score=33.95 Aligned_cols=56 Identities=29% Similarity=0.373 Sum_probs=42.6
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
|+.|..+.|+-|......|.++..+ ..+.+..|+++.+ .++.++|+. .+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~------~~~~l~~vDI~~d-----------------------~~l~~~Y~~-~IP 51 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE------FPFELEEVDIDED-----------------------PELFEKYGY-RIP 51 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT------STCEEEEEETTTT-----------------------HHHHHHSCT-STS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh------cCceEEEEECCCC-----------------------HHHHHHhcC-CCC
Confidence 6788999999999988777665332 4578999999865 568889995 789
Q ss_pred eEEEEC
Q 018726 247 ALVLIG 252 (351)
Q Consensus 247 ~~~lid 252 (351)
.+.+-+
T Consensus 52 Vl~~~~ 57 (81)
T PF05768_consen 52 VLHIDG 57 (81)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 876654
No 403
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.43 E-value=1.8 Score=43.23 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=52.0
Q ss_pred cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726 159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 238 (351)
Q Consensus 159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 238 (351)
..+++.+.|+.|+...|..|......|+++.+ +. +.+.+.....+. +..+++
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s----~~i~~~~~~~~~-----------------------~~~~~~ 413 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LS----EKLNSEAVNRGE-----------------------EPESET 413 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cC----CcEEEEEecccc-----------------------chhhHh
Confidence 35567788889999889899888777777753 32 556665554443 367889
Q ss_pred HcCcCceeeEEEECCCCc
Q 018726 239 IFNIKGIPALVLIGPDGK 256 (351)
Q Consensus 239 ~~~i~~~P~~~lid~~G~ 256 (351)
.|++...|++.+++.+|+
T Consensus 414 ~~~v~~~P~~~i~~~~~~ 431 (555)
T TIGR03143 414 LPKITKLPTVALLDDDGN 431 (555)
T ss_pred hcCCCcCCEEEEEeCCCc
Confidence 999999999999976653
No 404
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=92.34 E-value=0.081 Score=33.92 Aligned_cols=34 Identities=26% Similarity=0.621 Sum_probs=28.7
Q ss_pred CceeeccccCCCce---EEEEcCCCCCCCCccccCcc
Q 018726 314 KAYVCDCCKMRGRF---WAFSCDVCNYDLHPKCVEGI 347 (351)
Q Consensus 314 ~~~~Cd~C~~~~~~---~~~~c~~~~~~~~~~c~~~~ 347 (351)
.+..|+.|.+...| ..|+|+.|++-.|..|+...
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v 46 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKV 46 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccC
Confidence 45679999997554 89999999999999998754
No 405
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=91.64 E-value=0.17 Score=39.94 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=53.4
Q ss_pred CCeEEEEEeCC--CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726 42 GKTICLFFSAN--WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR 117 (351)
Q Consensus 42 gk~v~v~F~a~--wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 117 (351)
+...+|.|-.+ -++-+....=.+.+++++|.+.. +.++.|++|.+. .++..++++.+|++.+ +|+...++.|.
T Consensus 34 ~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~--v~~akVDiD~~~-~LA~~fgV~siPTLl~FkdGk~v~~i~G~ 110 (132)
T PRK11509 34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADLEQSE-AIGDRFGVFRFPATLVFTGGNYRGVLNGI 110 (132)
T ss_pred CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc--eEEEEEECCCCH-HHHHHcCCccCCEEEEEECCEEEEEEeCc
Confidence 33444444432 24557777778999999986321 455555555443 5777788888888887 88887777775
Q ss_pred hhhhHHhhhcc
Q 018726 118 KRREELKAIDD 128 (351)
Q Consensus 118 ~~~~~l~~~~~ 128 (351)
..-.++...++
T Consensus 111 ~~k~~l~~~I~ 121 (132)
T PRK11509 111 HPWAELINLMR 121 (132)
T ss_pred CCHHHHHHHHH
Confidence 55455544444
No 406
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=91.62 E-value=1.4 Score=34.46 Aligned_cols=62 Identities=21% Similarity=0.482 Sum_probs=46.6
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
..|+++|-|.-.|-+.|.++-..|.+.+++.+ .-..|..+.++.- ..+.+.|.
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~----~~a~IY~vDi~~V-----------------------pdfn~~ye 71 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK----NFAVIYLVDIDEV-----------------------PDFNQMYE 71 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT----TTEEEEEEETTTT-----------------------HCCHHHTT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhh----cceEEEEEEcccc-----------------------hhhhcccc
Confidence 46999999999999999999999999999886 4456777777753 45667777
Q ss_pred cCceeeEEEE
Q 018726 242 IKGIPALVLI 251 (351)
Q Consensus 242 i~~~P~~~li 251 (351)
+. .|.++++
T Consensus 72 l~-dP~tvmF 80 (133)
T PF02966_consen 72 LY-DPCTVMF 80 (133)
T ss_dssp S--SSEEEEE
T ss_pred cC-CCeEEEE
Confidence 77 6754443
No 407
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.48 E-value=0.51 Score=35.23 Aligned_cols=49 Identities=8% Similarity=-0.027 Sum_probs=28.7
Q ss_pred CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh---cCCceeeecChH
Q 018726 52 NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK---CMPWLAVPFDET 109 (351)
Q Consensus 52 ~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~---~~~~~~~~~~~~ 109 (351)
+|||+|.+....|.+ .| +.+..++++.+.+...+..+ ....|.+..+|+
T Consensus 25 ~~Cp~C~~ak~lL~~-------~~--i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~ 76 (97)
T TIGR00365 25 PQCGFSARAVQILKA-------CG--VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGE 76 (97)
T ss_pred CCCchHHHHHHHHHH-------cC--CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCE
Confidence 899999998877765 23 44666677655432222222 223456655654
No 408
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=0.52 Score=37.93 Aligned_cols=101 Identities=19% Similarity=0.295 Sum_probs=60.0
Q ss_pred ceeeccc-CCcEE-EEEEecCCChh-hHHhHHHHHHHHHHhhcccCCce-EEEEEeCCCCH--HHHHhhhccCCceeecc
Q 018726 155 KITVSEL-AGKTI-GLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCF-EVVLVSTDRDH--KEFDLNHSIMPWLAIPY 228 (351)
Q Consensus 155 ~~~l~~~-~gk~v-ll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~-~vv~v~~d~~~--~~~~~~~~~~~~~~~~~ 228 (351)
+++++++ +||-+ ++=.-+..-|. |+...|.+.+-+++++. +++ +|+.|++++.- .+|.+.+... -.+-+
T Consensus 34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elks---KGVd~iicvSVnDpFv~~aW~k~~g~~--~~V~f 108 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKS---KGVDEIICVSVNDPFVMKAWAKSLGAN--DHVKF 108 (171)
T ss_pred eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHh---cCCcEEEEEecCcHHHHHHHHhhcCcc--ceEEE
Confidence 6777775 67544 33333334445 78899999999999986 444 57788887422 3444444322 23444
Q ss_pred CchhhHHHHHHcCc-----------CceeeEEEECCCCceEecc
Q 018726 229 EDRARQDLCRIFNI-----------KGIPALVLIGPDGKTISTN 261 (351)
Q Consensus 229 ~~d~~~~~~~~~~i-----------~~~P~~~lid~~G~v~~~~ 261 (351)
..|...++.+.+|+ +.-...+++ .||+|...+
T Consensus 109 ~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~n 151 (171)
T KOG0541|consen 109 VADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVN 151 (171)
T ss_pred EecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEE
Confidence 55555555555543 233345555 789888765
No 409
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=90.59 E-value=0.81 Score=35.12 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=27.7
Q ss_pred HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726 186 IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 242 (351)
Q Consensus 186 ~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 242 (351)
.+...++.+ .++.+|.|....... .++|.+... ..+++..|++..+.+.+|+
T Consensus 3 ~~~~~~l~~---~gv~lv~I~~g~~~~-~~~f~~~~~-~p~~ly~D~~~~lY~~lg~ 54 (115)
T PF13911_consen 3 SRRKPELEA---AGVKLVVIGCGSPEG-IEKFCELTG-FPFPLYVDPERKLYKALGL 54 (115)
T ss_pred hHhHHHHHH---cCCeEEEEEcCCHHH-HHHHHhccC-CCCcEEEeCcHHHHHHhCC
Confidence 344455554 667777777764323 555554433 2344455555555555544
No 410
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.52 E-value=0.68 Score=33.92 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=33.5
Q ss_pred CCCeEEEEEe----CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh---cCCceeeecChH
Q 018726 41 GGKTICLFFS----ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK---CMPWLAVPFDET 109 (351)
Q Consensus 41 ~gk~v~v~F~----a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~---~~~~~~~~~~~~ 109 (351)
++++|+|.=. .+||+.|.+....|.+ .| +.+..++++.+.+...+..+ ....|.+..+|.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~--i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~ 72 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQ-------LG--VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGE 72 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHH-------cC--CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCE
Confidence 3445554432 2799999998777665 23 45666677666433222222 233566655654
No 411
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=90.40 E-value=2.7 Score=33.16 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=47.1
Q ss_pred cEEEEEEecC--CChh-h-HHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726 164 KTIGLYFGAH--WCPP-C-RSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 239 (351)
Q Consensus 164 k~vll~F~a~--~C~~-C-~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 239 (351)
..-+|.|... .|.. + ......|.+++++|+. +.+.+++++.+.. ..+.+.
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg---k~i~Fv~vd~~~~-----------------------~~~~~~ 74 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK---KPWGWLWTEAGAQ-----------------------LDLEEA 74 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC---CcEEEEEEeCccc-----------------------HHHHHH
Confidence 3556666543 2433 3 3456788899999983 3388888888764 458899
Q ss_pred cCcC--ceeeEEEECCCCc
Q 018726 240 FNIK--GIPALVLIGPDGK 256 (351)
Q Consensus 240 ~~i~--~~P~~~lid~~G~ 256 (351)
||+. ++|++++++.++.
T Consensus 75 fgl~~~~~P~v~i~~~~~~ 93 (130)
T cd02983 75 LNIGGFGYPAMVAINFRKM 93 (130)
T ss_pred cCCCccCCCEEEEEecccC
Confidence 9985 4999999988664
No 412
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=0.98 Score=34.14 Aligned_cols=63 Identities=25% Similarity=0.423 Sum_probs=35.4
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 246 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 246 (351)
+|.|.-+||+.|...-..|.+ +. ....|+-+.-+.+-.++. ..+.+.-+-..+|
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~----v~~~vvELD~~~~g~eiq------------------~~l~~~tg~~tvP 69 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LG----VNPKVVELDEDEDGSEIQ------------------KALKKLTGQRTVP 69 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CC----CCCEEEEccCCCCcHHHH------------------HHHHHhcCCCCCC
Confidence 568899999999985443333 33 344455544443322222 2333334556889
Q ss_pred eEEEECCCCceE
Q 018726 247 ALVLIGPDGKTI 258 (351)
Q Consensus 247 ~~~lid~~G~v~ 258 (351)
.+|| +|+-+
T Consensus 70 ~vFI---~Gk~i 78 (104)
T KOG1752|consen 70 NVFI---GGKFI 78 (104)
T ss_pred EEEE---CCEEE
Confidence 8776 45544
No 413
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=0.6 Score=33.44 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.1
Q ss_pred EEEEecCCChhhHHhHHHHH
Q 018726 167 GLYFGAHWCPPCRSFTSQLI 186 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~ 186 (351)
+..|..++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 56788899999998876665
No 414
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=90.05 E-value=0.12 Score=33.88 Aligned_cols=25 Identities=28% Similarity=0.719 Sum_probs=21.7
Q ss_pred ceeeccccCC---CceEEEEcCCCCCCC
Q 018726 315 AYVCDCCKMR---GRFWAFSCDVCNYDL 339 (351)
Q Consensus 315 ~~~Cd~C~~~---~~~~~~~c~~~~~~~ 339 (351)
.|+|.+|+.. -.+=+.+|.+|||.+
T Consensus 20 iYiCgdC~~en~lk~~D~irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLKRGDVIRCRECGYRI 47 (62)
T ss_pred EEEeccccccccccCCCcEehhhcchHH
Confidence 5999999984 678899999999864
No 415
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=90.02 E-value=0.14 Score=45.84 Aligned_cols=70 Identities=10% Similarity=0.013 Sum_probs=43.3
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI 116 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 116 (351)
++-.|+|.||-+.++.|..+...|..||.+|... .++-|.... ..+...+.....|+|+. +|.....+.+
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~v----KFvkI~a~~--~~~~~~f~~~~LPtllvYk~G~l~~~~V~ 216 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEV----KFVKIRASK--CPASENFPDKNLPTLLVYKNGDLIGNFVG 216 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTS----EEEEEEECG--CCTTTTS-TTC-SEEEEEETTEEEEEECT
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCce----EEEEEehhc--cCcccCCcccCCCEEEEEECCEEEEeEEe
Confidence 4568999999999999999999999999998763 455444432 21222233333455554 7766555544
No 416
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=90.02 E-value=0.35 Score=41.57 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=28.9
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhc
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTR 74 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~ 74 (351)
..|++-++.|+...||+|..+.+.+ ..+.+.+.+.
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~ 72 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG 72 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC
Confidence 3688899999999999999999876 6777776544
No 417
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=1.1 Score=32.06 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=32.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHH----hcCCceeeecChH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHF----KCMPWLAVPFDET 109 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~----~~~~~~~~~~~~~ 109 (351)
++.|.-+|||+|.+....|. ..| +++..+.++.+.. ...+.. .....|.+..++.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g--~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKG--VDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcC--CCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCE
Confidence 56678899999999776666 344 4555666655442 222222 2344566666553
No 418
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=89.98 E-value=0.36 Score=41.53 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=31.2
Q ss_pred CCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEe
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVS 206 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~ 206 (351)
.|++.|+.|+...||+|..+.+.+ ..+.+.+. +++.++.+.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~----~~v~~~~~~ 79 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP----EGTKMTKYH 79 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCC----CCCeEEEec
Confidence 468889999999999999999866 77777776 444444433
No 419
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=89.93 E-value=0.49 Score=34.37 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=29.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d 86 (351)
+..|+.+.|++|..+.+.+.++.+...++ +.+.+..+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~---~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGG---VRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCc---EEEEEeccc
Confidence 46799999999999999999988544433 666666554
No 420
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=89.78 E-value=3.7 Score=31.81 Aligned_cols=89 Identities=21% Similarity=0.170 Sum_probs=51.6
Q ss_pred ecccCCcEEEEEEecC--CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726 158 VSELAGKTIGLYFGAH--WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 235 (351)
Q Consensus 158 l~~~~gk~vll~F~a~--~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 235 (351)
|++++++.=+|..+|+ .-+.=+.....|.+-...+.+ .++.++.+.-+..... .-+........
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~e---Rdi~v~~i~~~~~~~~-----------~~~~~~~~~~~ 68 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDE---RDIVVIVITGDGARSP-----------GKPLSPEDIQA 68 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhcccc---CceEEEEEeCCccccc-----------cCcCCHHHHHH
Confidence 4566665433333443 233345555566665555654 7888887754432100 01222233568
Q ss_pred HHHHcCcC-ceeeEEEECCCCceEec
Q 018726 236 LCRIFNIK-GIPALVLIGPDGKTIST 260 (351)
Q Consensus 236 ~~~~~~i~-~~P~~~lid~~G~v~~~ 260 (351)
+.+.|++. +.-+++||++||.+-.+
T Consensus 69 lr~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 69 LRKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred HHHHhCCCCCceEEEEEeCCCcEEEe
Confidence 88899875 34679999999999877
No 421
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=89.58 E-value=0.13 Score=32.74 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=28.1
Q ss_pred CCceeeccccCCCceE--EEEcCCCCCCCCccccCcc
Q 018726 313 AKAYVCDCCKMRGRFW--AFSCDVCNYDLHPKCVEGI 347 (351)
Q Consensus 313 ~~~~~Cd~C~~~~~~~--~~~c~~~~~~~~~~c~~~~ 347 (351)
..+..|+.|++...+. .|+|..|++-.|..|+...
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v 45 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKV 45 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhhc
Confidence 3456799999975542 6999999999999998754
No 422
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=89.42 E-value=0.89 Score=38.68 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=24.9
Q ss_pred CCCCCeEEEEEeCCCChhhhhhhHHHHH
Q 018726 39 SCGGKTICLFFSANWCRPCKTFTPQLVQ 66 (351)
Q Consensus 39 ~~~gk~v~v~F~a~wC~~C~~~~p~~~~ 66 (351)
.-.++..++.|+.+.|++|+++.+.+.+
T Consensus 74 ~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 74 KGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 3467999999999999999999998877
No 423
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=88.39 E-value=0.94 Score=39.17 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=43.8
Q ss_pred CCCcccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726 31 RQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (351)
Q Consensus 31 ~~g~~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d 86 (351)
..|..++....|++++|-+-..+|..|......|+.|..++...|- .+|.|+-|+
T Consensus 15 i~~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~-~~I~f~vVN 69 (238)
T PF04592_consen 15 IGGQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGL-SNISFMVVN 69 (238)
T ss_pred ECCchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCC-CceEEEEEc
Confidence 3444667778999999999999999999999999999999988762 144444444
No 424
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.36 E-value=1.5 Score=33.11 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=33.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC--ChhhHHHHHh----cCCceeeecChH
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH--DENGFEEHFK----CMPWLAVPFDET 109 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~--~~~~~~~~~~----~~~~~~~~~~~~ 109 (351)
+|.|.-+||+.|.++...|.+ .+ +....+.+|. +...+++++. ....|.+..+|+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~-------~~--v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk 76 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD-------LG--VNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGK 76 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh-------CC--CCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCE
Confidence 567899999999996665555 23 3344555554 4335666544 224566666554
No 425
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.24 E-value=0.84 Score=45.57 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=35.4
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCCh
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDE 89 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~ 89 (351)
-++|||+|...++||..|.-|..+- .++|+-++.. +|-|+||.++
T Consensus 41 ~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREE 88 (667)
T COG1331 41 EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREE 88 (667)
T ss_pred HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhh
Confidence 4899999999999999999987643 4566666654 8888888654
No 426
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=87.89 E-value=0.44 Score=36.15 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=21.9
Q ss_pred hHHHHHHcCcCceeeEEEECCCCceEec
Q 018726 233 RQDLCRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 233 ~~~~~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
...+..+||+..+|+++++ ++|+.+..
T Consensus 71 e~~L~~r~gv~~~PaLvf~-R~g~~lG~ 97 (107)
T PF07449_consen 71 ERALAARFGVRRWPALVFF-RDGRYLGA 97 (107)
T ss_dssp HHHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred HHHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence 4799999999999999999 67766544
No 427
>PRK10824 glutaredoxin-4; Provisional
Probab=87.58 E-value=0.81 Score=35.31 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=16.8
Q ss_pred cEEEEEEec----CCChhhHHhHHHHHHH
Q 018726 164 KTIGLYFGA----HWCPPCRSFTSQLIEV 188 (351)
Q Consensus 164 k~vll~F~a----~~C~~C~~~~~~l~~l 188 (351)
..|+|+--+ +|||+|.+....|.++
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 445554443 5999999887766554
No 428
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=87.07 E-value=1.5 Score=38.50 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=31.7
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d 86 (351)
-+||.+++.|.-+.||.|+++.+.+.++.+ .+ +.+.++...
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~--v~v~~~~~P 145 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA----LG--ITVRYLAFP 145 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhc----CC--eEEEEEecc
Confidence 368999999999999999999999877533 34 666665443
No 429
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=86.66 E-value=2.6 Score=33.85 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=53.9
Q ss_pred cCcce-eeCCCCc-ccccCCCCCeEEEEEeCCCCh-hhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726 23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM 99 (351)
Q Consensus 23 ~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~-~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 99 (351)
..+++ |...+.. +++.++.||..+|..+.+=-. -|......|.+.+.++.+ ..+..||.|--- ...+++..-
T Consensus 23 ~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~----~~Vl~IS~DLPF-Aq~RfC~ae 97 (158)
T COG2077 23 KAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN----TVVLCISMDLPF-AQKRFCGAE 97 (158)
T ss_pred cCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC----cEEEEEeCCChh-HHhhhhhhc
Confidence 44545 8888888 999999999999988876554 499999999998888754 468888888532 234444444
Q ss_pred C
Q 018726 100 P 100 (351)
Q Consensus 100 ~ 100 (351)
+
T Consensus 98 G 98 (158)
T COG2077 98 G 98 (158)
T ss_pred C
Confidence 3
No 430
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=86.30 E-value=1.4 Score=42.15 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=23.8
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~ 211 (351)
|+.|..+|||+|.+....|.+ .++..-.|++|.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~----------~gi~~~~idi~~~~ 38 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA----------NDIPFTQISLDDDV 38 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH----------CCCCeEEEECCCCh
Confidence 678999999999987665544 23445556666543
No 431
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=86.07 E-value=1.8 Score=42.91 Aligned_cols=64 Identities=14% Similarity=0.071 Sum_probs=45.9
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeecChH
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPFDET 109 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~~~~ 109 (351)
..++.-+..|..++|++|......+.+++.... ++..-.| |... ....+.+..+.+|++..+++
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~----~i~~~~i--d~~~~~~~~~~~~v~~VP~~~i~~~ 178 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP----NITHTMI--DGALFQDEVEARNIMAVPTVFLNGE 178 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC----CceEEEE--EchhCHhHHHhcCCcccCEEEECCc
Confidence 355666899999999999999888888877522 2444444 5432 24666788888999988764
No 432
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=84.12 E-value=1.2 Score=31.96 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=38.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecCh
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE 108 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~ 108 (351)
++.|..+.|+-|......+.++.... + +.+..|+++.+.+-..+| .. -.|.+..++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~--~~l~~vDI~~d~~l~~~Y-~~-~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---P--FELEEVDIDEDPELFEKY-GY-RIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---T--CEEEEEETTTTHHHHHHS-CT-STSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---C--ceEEEEECCCCHHHHHHh-cC-CCCEEEEcC
Confidence 57788999999999888888754432 2 789999999776534433 32 356666654
No 433
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=83.39 E-value=0.54 Score=39.33 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=51.7
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh-HHHH--HhcCCceeeecChHHHHHHhh
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG-FEEH--FKCMPWLAVPFDETLHKKLRI 116 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~~ 116 (351)
+..-|++.||-+.-..|+-|..+++.|++++ +...||.++..... +... +++.|+..+.-+|.....+.|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h------~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVG 155 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRH------VETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVG 155 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhc------ccceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEEEEee
Confidence 5556899999999999999999999999985 45778888876654 2222 556665444448877766665
No 434
>PHA03075 glutaredoxin-like protein; Provisional
Probab=83.24 E-value=1.9 Score=32.90 Aligned_cols=30 Identities=30% Similarity=0.557 Sum_probs=26.6
Q ss_pred cEEEEEEecCCChhhHHhHHHHHHHHHHhh
Q 018726 164 KTIGLYFGAHWCPPCRSFTSQLIEVYNELK 193 (351)
Q Consensus 164 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~ 193 (351)
|.+++.|.-|.|+.|......|.++.++|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 578999999999999999999988877775
No 435
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=82.97 E-value=0.19 Score=48.61 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=34.3
Q ss_pred CCcceeeee-cCCceeeccccCCCceEE---EEcCCCCCCCCccccCc
Q 018726 303 KHEHELKLD-MAKAYVCDCCKMRGRFWA---FSCDVCNYDLHPKCVEG 346 (351)
Q Consensus 303 ~~~~~l~l~-~~~~~~Cd~C~~~~~~~~---~~c~~~~~~~~~~c~~~ 346 (351)
++||.+..- ...+-.||.|+|...|.+ -+|+-||...|..||.+
T Consensus 143 i~PH~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~k 190 (888)
T KOG4236|consen 143 IRPHTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFK 190 (888)
T ss_pred eecceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhc
Confidence 456666644 234568999999888876 57999999999999985
No 436
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.61 E-value=19 Score=32.69 Aligned_cols=79 Identities=19% Similarity=0.344 Sum_probs=55.2
Q ss_pred cccCCcEEEEEEec----CCChhhHHhHHHHHHHHHHhhccc--CCceEEEEEeCCCCHHHHHhhhccCCceeeccCchh
Q 018726 159 SELAGKTIGLYFGA----HWCPPCRSFTSQLIEVYNELKTTA--NHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA 232 (351)
Q Consensus 159 ~~~~gk~vll~F~a----~~C~~C~~~~~~l~~l~~~~~~~~--~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~ 232 (351)
...++=.+++.|.| ..|.-|+.+..+++-+++.+.... ..+-.+.+-.+|-++
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e--------------------- 114 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE--------------------- 114 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc---------------------
Confidence 44455567777776 469999999999999998886421 122344554444332
Q ss_pred hHHHHHHcCcCceeeEEEECC-CCceE
Q 018726 233 RQDLCRIFNIKGIPALVLIGP-DGKTI 258 (351)
Q Consensus 233 ~~~~~~~~~i~~~P~~~lid~-~G~v~ 258 (351)
..++.+.+++...|+++++.| .|++.
T Consensus 115 ~p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred cHHHHHHhcccCCCeEEEeCCCccccc
Confidence 468899999999999999965 56655
No 437
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=81.87 E-value=0.34 Score=43.80 Aligned_cols=33 Identities=21% Similarity=0.615 Sum_probs=28.9
Q ss_pred CCceeeccccC-CCceEEEEcCCCC-CCCCccccC
Q 018726 313 AKAYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 345 (351)
Q Consensus 313 ~~~~~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~~ 345 (351)
+-+..|++|.- .-.|++|+|..|. |.+++.|-.
T Consensus 238 ~hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfw 272 (434)
T KOG4301|consen 238 FHPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFW 272 (434)
T ss_pred CCCccCcceecccccchhhhHhhcCCccccchhhc
Confidence 34578999987 6999999999999 999999965
No 438
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=81.38 E-value=13 Score=35.14 Aligned_cols=28 Identities=18% Similarity=0.498 Sum_probs=24.9
Q ss_pred hHHHHHHcCcCceeeEEEECCCCceEec
Q 018726 233 RQDLCRIFNIKGIPALVLIGPDGKTIST 260 (351)
Q Consensus 233 ~~~~~~~~~i~~~P~~~lid~~G~v~~~ 260 (351)
...++..|-+..+|..|+||..|+.+.+
T Consensus 66 a~qFs~IYp~v~vPs~ffIg~sGtpLev 93 (506)
T KOG2507|consen 66 ATQFSAIYPYVSVPSIFFIGFSGTPLEV 93 (506)
T ss_pred hhhhhhhcccccccceeeecCCCceeEE
Confidence 4577888899999999999999999887
No 439
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=80.21 E-value=3.5 Score=36.57 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=25.5
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHH
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYD 69 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~ 69 (351)
.+|.+++.|.-+.||+|+++.+.+.++.+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 67889999999999999999998877554
No 440
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=79.93 E-value=1.3 Score=33.24 Aligned_cols=17 Identities=29% Similarity=0.872 Sum_probs=14.1
Q ss_pred ceEEEEcCCCC-C-CCCcc
Q 018726 326 RFWAFSCDVCN-Y-DLHPK 342 (351)
Q Consensus 326 ~~~~~~c~~~~-~-~~~~~ 342 (351)
..|.|.|..|+ | ++|+.
T Consensus 28 ~~~~y~C~~C~AyVG~H~~ 46 (102)
T PF11672_consen 28 GPYLYVCTPCDAYVGCHPG 46 (102)
T ss_pred CceeEECCCCCceeeeeCC
Confidence 36789999999 4 89984
No 441
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=79.45 E-value=15 Score=28.71 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=43.0
Q ss_pred HHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726 179 RSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 258 (351)
Q Consensus 179 ~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~ 258 (351)
-.++-.+....+.+++ .++.|...++..++.+|...-. -..+.+.-|...+|.+++ ||+|+
T Consensus 23 d~eL~~~a~~~~~Lk~---~gv~v~RyNL~~~P~aF~~n~~-------------V~~~L~~~G~e~LPitlV---dGeiv 83 (123)
T PF06953_consen 23 DPELVRFAADLDWLKE---QGVEVERYNLAQNPQAFVENPE-------------VNQLLQTEGAEALPITLV---DGEIV 83 (123)
T ss_dssp -HHHHHHHHHHHHHHH---TT-EEEEEETTT-TTHHHHSHH-------------HHHHHHHH-GGG-SEEEE---TTEEE
T ss_pred CHHHHHHHHHHHHHHh---CCceEEEEccccCHHHHHhCHH-------------HHHHHHHcCcccCCEEEE---CCEEE
Confidence 4455566777777776 7899999999888777766544 356666678999998877 79998
Q ss_pred ec
Q 018726 259 ST 260 (351)
Q Consensus 259 ~~ 260 (351)
..
T Consensus 84 ~~ 85 (123)
T PF06953_consen 84 KT 85 (123)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 442
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=78.42 E-value=8.1 Score=32.66 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=59.7
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
+|-+|+|-.|...-|-|.-....|++++..|++ +.+|-|....- ...|-
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-----iKFVki~at~c--------------------------IpNYP 158 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-----IKFVKIPATTC--------------------------IPNYP 158 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-----ceEEecccccc--------------------------cCCCc
Confidence 477999999999999999999999999999974 45554433221 12344
Q ss_pred cCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHH
Q 018726 242 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 290 (351)
Q Consensus 242 i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 290 (351)
=...||++++ -.|.+... ++|...+....-..+++...+-.
T Consensus 159 e~nlPTl~VY-~~G~lk~q-------~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 159 ESNLPTLLVY-HHGALKKQ-------MIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred ccCCCeEEEe-ecchHHhh-------eehhhhhcCCcCCHHHHHHHHHh
Confidence 4568999998 56766655 44544444444445555444433
No 443
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=78.18 E-value=4.2 Score=38.94 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=25.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~ 89 (351)
++.|..+|||+|.+....+.+ .| +....+++|.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~g--i~~~~idi~~~~ 38 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------ND--IPFTQISLDDDV 38 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CC--CCeEEEECCCCh
Confidence 667899999999988776665 34 456677777554
No 444
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=77.91 E-value=12 Score=28.63 Aligned_cols=52 Identities=8% Similarity=0.206 Sum_probs=35.9
Q ss_pred hHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCc----eeeEEEECC
Q 018726 178 CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG----IPALVLIGP 253 (351)
Q Consensus 178 C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~----~P~~~lid~ 253 (351)
-......+.+++++|+. .++.++.++.+. ...+.+.||+.. .|++.+++.
T Consensus 33 ~~~~~~~~~~vAk~fk~---gki~Fv~~D~~~-----------------------~~~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 33 TNYWRNRVLKVAKDFPD---RKLNFAVADKED-----------------------FSHELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred HHHHHHHHHHHHHHCcC---CeEEEEEEcHHH-----------------------HHHHHHHcCCCcccCCCCEEEEEeC
Confidence 45567788888888871 245555554443 234778899974 899999986
Q ss_pred CC
Q 018726 254 DG 255 (351)
Q Consensus 254 ~G 255 (351)
++
T Consensus 87 ~~ 88 (111)
T cd03073 87 KG 88 (111)
T ss_pred CC
Confidence 65
No 445
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=77.82 E-value=14 Score=25.89 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=48.4
Q ss_pred EEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCc
Q 018726 165 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG 244 (351)
Q Consensus 165 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 244 (351)
+.+..|-+..-+.....+..+.++.+++.. ..+++=.|++... .++++.+++.+
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~---~~~~LeVIDv~~~-----------------------P~lAe~~~ivA 55 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLG---GPYELEVIDVLKQ-----------------------PQLAEEDKIVA 55 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcC---CcEEEEEEEcccC-----------------------HhHHhhCCEEE
Confidence 456667777667788888889888888764 6677777777654 58899999999
Q ss_pred eeeEEEECC
Q 018726 245 IPALVLIGP 253 (351)
Q Consensus 245 ~P~~~lid~ 253 (351)
+||++-..|
T Consensus 56 tPtLvk~~P 64 (72)
T cd02978 56 TPTLVKVLP 64 (72)
T ss_pred echhhhcCC
Confidence 999876644
No 446
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=76.55 E-value=3.6 Score=38.58 Aligned_cols=26 Identities=23% Similarity=0.741 Sum_probs=23.1
Q ss_pred CCceeeccccCCCceEEEEcCCCC-CC
Q 018726 313 AKAYVCDCCKMRGRFWAFSCDVCN-YD 338 (351)
Q Consensus 313 ~~~~~Cd~C~~~~~~~~~~c~~~~-~~ 338 (351)
...+.|+.|+---..|.++|+.|+ |+
T Consensus 352 ~p~~~c~~cg~~~~~~~~~c~~c~~~~ 378 (389)
T PRK11788 352 KPRYRCRNCGFTARTLYWHCPSCKAWE 378 (389)
T ss_pred CCCEECCCCCCCCccceeECcCCCCcc
Confidence 344899999999999999999999 65
No 447
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=76.08 E-value=13 Score=27.79 Aligned_cols=79 Identities=11% Similarity=0.216 Sum_probs=53.1
Q ss_pred eEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-hhhHHHHHhcC----Cceeeec---ChHHHHHHh
Q 018726 44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCM----PWLAVPF---DETLHKKLR 115 (351)
Q Consensus 44 ~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~----~~~~~~~---~~~~~~~l~ 115 (351)
-|++.|..+- ..-...+..+.++|+..++.| .+++|++... ...+++.+++. |-|..+. ||+-...+.
T Consensus 21 NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~g---T~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdYd 96 (112)
T cd03067 21 NVLVLYSKSA-KSAEALLKLLSDVAQAVKGQG---TIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEYN 96 (112)
T ss_pred cEEEEEecch-hhHHHHHHHHHHHHHHhcCce---eEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCCcccccc
Confidence 4566666554 333566779999999999886 7889988753 33588888877 5444332 787777776
Q ss_pred hhhhhhHHhhh
Q 018726 116 IRKRREELKAI 126 (351)
Q Consensus 116 ~~~~~~~l~~~ 126 (351)
+......+..+
T Consensus 97 R~~t~kSmv~F 107 (112)
T cd03067 97 RQLTFKSMVAF 107 (112)
T ss_pred chhhHHHHHHH
Confidence 66555554443
No 448
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=75.35 E-value=11 Score=34.83 Aligned_cols=73 Identities=14% Similarity=0.266 Sum_probs=46.5
Q ss_pred CcEEEEEEecCCChhhHHhH------HHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHH
Q 018726 163 GKTIGLYFGAHWCPPCRSFT------SQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL 236 (351)
Q Consensus 163 gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 236 (351)
-+..+|+|+.+--. -+... -.+-+|+.+.-+ ..++.+..|+...+ ..+
T Consensus 51 yd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE--~~gigfg~VD~~Kd-----------------------~kl 104 (383)
T PF01216_consen 51 YDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLE--DKGIGFGMVDSKKD-----------------------AKL 104 (383)
T ss_dssp -SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCG--GCTEEEEEEETTTT-----------------------HHH
T ss_pred hcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhcc--ccCcceEEeccHHH-----------------------HHH
Confidence 35778888876532 22221 222344444432 37889999988875 799
Q ss_pred HHHcCcCceeeEEEECCCCceEeccc
Q 018726 237 CRIFNIKGIPALVLIGPDGKTISTNG 262 (351)
Q Consensus 237 ~~~~~i~~~P~~~lid~~G~v~~~~~ 262 (351)
++++|+...++++++ ++|+++..+|
T Consensus 105 AKKLgv~E~~SiyVf-kd~~~IEydG 129 (383)
T PF01216_consen 105 AKKLGVEEEGSIYVF-KDGEVIEYDG 129 (383)
T ss_dssp HHHHT--STTEEEEE-ETTEEEEE-S
T ss_pred HHhcCccccCcEEEE-ECCcEEEecC
Confidence 999999999999999 8888887755
No 449
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=75.21 E-value=7.6 Score=26.56 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=34.9
Q ss_pred EEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeE
Q 018726 169 YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPAL 248 (351)
Q Consensus 169 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 248 (351)
.|+..||+.|++..-.|.+. +-.++++.++.... ...+.+......+|++
T Consensus 3 ly~~~~~p~~~rv~~~L~~~--------gl~~e~~~v~~~~~----------------------~~~~~~~np~~~vP~L 52 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA--------GITVELREVELKNK----------------------PAEMLAASPKGTVPVL 52 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc--------CCCcEEEEeCCCCC----------------------CHHHHHHCCCCCCCEE
Confidence 56788999999876555332 14456666655322 1344444455678887
Q ss_pred EEECCCCceEec
Q 018726 249 VLIGPDGKTIST 260 (351)
Q Consensus 249 ~lid~~G~v~~~ 260 (351)
.. .+|..+..
T Consensus 53 ~~--~~g~~l~e 62 (71)
T cd03060 53 VL--GNGTVIEE 62 (71)
T ss_pred EE--CCCcEEec
Confidence 43 45665543
No 450
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=75.20 E-value=13 Score=31.77 Aligned_cols=75 Identities=20% Similarity=0.367 Sum_probs=52.0
Q ss_pred eeCCCCcccccC-CCCCe--EEEEEe-----CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726 28 LLSRQGKVPLSS-CGGKT--ICLFFS-----ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM 99 (351)
Q Consensus 28 l~~~~g~~~~~~-~~gk~--v~v~F~-----a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 99 (351)
+...+|++++++ |.|+- ++..|- ...|+-|..+...+......+...+ +.++.|+-. ..+.+..+-+.+
T Consensus 51 F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSra-P~~~i~afk~rm 127 (211)
T PF05988_consen 51 FDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRA-PLEKIEAFKRRM 127 (211)
T ss_pred EeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCC-CHHHHHHHHHhc
Confidence 556777788887 46643 343443 4569999999999977777777775 556666543 344678888889
Q ss_pred Cceeeec
Q 018726 100 PWLAVPF 106 (351)
Q Consensus 100 ~~~~~~~ 106 (351)
+|. ++.
T Consensus 128 GW~-~pw 133 (211)
T PF05988_consen 128 GWT-FPW 133 (211)
T ss_pred CCC-ceE
Confidence 985 665
No 451
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=74.69 E-value=5.4 Score=39.46 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=45.4
Q ss_pred CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeecChH
Q 018726 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPFDET 109 (351)
Q Consensus 40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~~~~ 109 (351)
..++.-+.-|..+.|++|......+.+++.... ++..-. +|... ....+.+..+.+|++.++++
T Consensus 115 ~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~--id~~~~~~~~~~~~v~~VP~~~i~~~ 179 (515)
T TIGR03140 115 LNGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTM--IDGALFQDEVEALGIQGVPAVFLNGE 179 (515)
T ss_pred cCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEE--EEchhCHHHHHhcCCcccCEEEECCc
Confidence 356667899999999999988888877776532 244333 55432 24667788888999988664
No 452
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=73.13 E-value=1.3 Score=44.49 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=25.5
Q ss_pred eeccccC-CCceEEEEcCCCC-CCCCcccc
Q 018726 317 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCV 344 (351)
Q Consensus 317 ~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~ 344 (351)
-|..|++ ...|++|+|-.|= |||+..|-
T Consensus 605 kCniCk~~pIvG~RyR~l~~fn~dlCq~CF 634 (966)
T KOG4286|consen 605 KCNICKECPIIGFRYRSLKHFNYDICQSCF 634 (966)
T ss_pred hcchhhhCccceeeeeehhhcChhHHhhHh
Confidence 3999999 7999999999996 99999994
No 453
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=73.04 E-value=19 Score=27.42 Aligned_cols=51 Identities=10% Similarity=0.030 Sum_probs=37.3
Q ss_pred hHHhHHHHHHHHHH---hhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCc--eeeEEEEC
Q 018726 178 CRSFTSQLIEVYNE---LKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG--IPALVLIG 252 (351)
Q Consensus 178 C~~~~~~l~~l~~~---~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~--~P~~~lid 252 (351)
-......+.+++++ ++ .++.++.++.+.. ....+.||+.. +|.+.+.+
T Consensus 29 ~~~~~~~~~~vAk~~~~~k----gki~Fv~~d~~~~-----------------------~~~~~~fgl~~~~~P~i~i~~ 81 (111)
T cd03072 29 LESLKEFKQAVARQLISEK----GAINFLTADGDKF-----------------------RHPLLHLGKTPADLPVIAIDS 81 (111)
T ss_pred HHHHHHHHHHHHHHHHhcC----ceEEEEEEechHh-----------------------hhHHHHcCCCHhHCCEEEEEc
Confidence 45667788888888 76 4566666665542 34888999986 89999997
Q ss_pred CCC
Q 018726 253 PDG 255 (351)
Q Consensus 253 ~~G 255 (351)
-++
T Consensus 82 ~~~ 84 (111)
T cd03072 82 FRH 84 (111)
T ss_pred chh
Confidence 654
No 454
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=72.94 E-value=2.2 Score=32.51 Aligned_cols=34 Identities=21% Similarity=0.515 Sum_probs=29.0
Q ss_pred CceeeccccCCCceEEEEcCC--CCCCCCccccCccc
Q 018726 314 KAYVCDCCKMRGRFWAFSCDV--CNYDLHPKCVEGIN 348 (351)
Q Consensus 314 ~~~~Cd~C~~~~~~~~~~c~~--~~~~~~~~c~~~~~ 348 (351)
....|..|++. .|-.-+|.. |..-+||.||....
T Consensus 54 ~~~~C~iC~~~-~G~~i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 54 FKLKCSICGKS-GGACIKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred cCCcCcCCCCC-CceeEEcCCCCCCcCCCHHHHHHCC
Confidence 46789999998 677899998 99999999998543
No 455
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=71.18 E-value=2.2 Score=23.31 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.2
Q ss_pred eeccccCCCceEEEEcCCCCCCC
Q 018726 317 VCDCCKMRGRFWAFSCDVCNYDL 339 (351)
Q Consensus 317 ~Cd~C~~~~~~~~~~c~~~~~~~ 339 (351)
.|-.|++...--.=.|..|||++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 47888888888888899999875
No 456
>PRK09301 circadian clock protein KaiB; Provisional
Probab=70.96 E-value=21 Score=26.79 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=51.7
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 241 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 241 (351)
++++++=.|.+..-+..+..+..+.++.+++.. ..+.+=.|.+-.. .++++.+.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~---g~y~LeVIDv~~q-----------------------PelAE~~~ 57 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFK---GVYALKVIDVLKN-----------------------PQLAEEDK 57 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC---CceEEEEEEcccC-----------------------HhHHhHCC
Confidence 456777777787778899999999999887764 4577777776654 58999999
Q ss_pred cCceeeEEEECC
Q 018726 242 IKGIPALVLIGP 253 (351)
Q Consensus 242 i~~~P~~~lid~ 253 (351)
|.++||++=.-|
T Consensus 58 IvATPTLIK~~P 69 (103)
T PRK09301 58 ILATPTLAKILP 69 (103)
T ss_pred eEEecHHhhcCC
Confidence 999999887754
No 457
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=70.94 E-value=21 Score=28.84 Aligned_cols=47 Identities=13% Similarity=0.038 Sum_probs=28.0
Q ss_pred CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh---HHHHHhc----CCceeeecCh
Q 018726 53 WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FEEHFKC----MPWLAVPFDE 108 (351)
Q Consensus 53 wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~---~~~~~~~----~~~~~~~~~~ 108 (351)
+|++|.+....|++ .+ +.+..++++.+.+. +.+.... ...|.+..++
T Consensus 15 t~~~C~~ak~iL~~-------~~--V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G 68 (147)
T cd03031 15 TFEDCNNVRAILES-------FR--VKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDG 68 (147)
T ss_pred cChhHHHHHHHHHH-------CC--CcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECC
Confidence 89999998877765 22 45666777655432 3333332 3456666544
No 458
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=69.35 E-value=2.6 Score=22.16 Aligned_cols=10 Identities=30% Similarity=1.112 Sum_probs=6.5
Q ss_pred EEcCCCCCCC
Q 018726 330 FSCDVCNYDL 339 (351)
Q Consensus 330 ~~c~~~~~~~ 339 (351)
|+|+.|+|..
T Consensus 1 y~C~~C~y~t 10 (24)
T PF13909_consen 1 YKCPHCSYST 10 (24)
T ss_dssp EE-SSSS-EE
T ss_pred CCCCCCCCcC
Confidence 8999999853
No 459
>PHA03075 glutaredoxin-like protein; Provisional
Probab=67.86 E-value=8.7 Score=29.37 Aligned_cols=29 Identities=24% Similarity=0.539 Sum_probs=24.5
Q ss_pred CeEEEEEeCCCChhhhhhhHHHHHHHHHH
Q 018726 43 KTICLFFSANWCRPCKTFTPQLVQLYDTL 71 (351)
Q Consensus 43 k~v~v~F~a~wC~~C~~~~p~~~~l~~~~ 71 (351)
|.++|.|.-|-|+-|......+.++.++|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56899999999999999888887766654
No 460
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=67.68 E-value=3.8 Score=26.18 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=25.9
Q ss_pred eeccccC-CCceEEEEcCCCCCCCCccccCcc
Q 018726 317 VCDCCKM-RGRFWAFSCDVCNYDLHPKCVEGI 347 (351)
Q Consensus 317 ~Cd~C~~-~~~~~~~~c~~~~~~~~~~c~~~~ 347 (351)
.|..|++ ...+..-.|+.|+--.|..|.-.+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPP 32 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSS
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCC
Confidence 4677877 578889999999999999998754
No 461
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=67.61 E-value=19 Score=31.48 Aligned_cols=46 Identities=26% Similarity=0.284 Sum_probs=34.4
Q ss_pred eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhh
Q 018726 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT 73 (351)
Q Consensus 28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~ 73 (351)
.+..++. +......+++.++.|.-.-|++|++..|.+.+.+....+
T Consensus 69 ~~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 69 YLTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred eecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 3444555 555555679999999999999999988888886665543
No 462
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=67.34 E-value=17 Score=24.78 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=20.5
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726 48 FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (351)
Q Consensus 48 ~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d 86 (351)
.|+.+||+.|++..-.+.. +|..++++.++..
T Consensus 3 ly~~~~~p~~~rv~~~L~~-------~gl~~e~~~v~~~ 34 (71)
T cd03060 3 LYSFRRCPYAMRARMALLL-------AGITVELREVELK 34 (71)
T ss_pred EEecCCCcHHHHHHHHHHH-------cCCCcEEEEeCCC
Confidence 4678999999887655443 3333666655554
No 463
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=67.12 E-value=11 Score=29.62 Aligned_cols=71 Identities=7% Similarity=0.068 Sum_probs=41.0
Q ss_pred hhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc--CCceeeec-ChHH-HHH-HhhhhhhhHHhhhccccc
Q 018726 58 KTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC--MPWLAVPF-DETL-HKK-LRIRKRREELKAIDDSKR 131 (351)
Q Consensus 58 ~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~--~~~~~~~~-~~~~-~~~-l~~~~~~~~l~~~~~~~~ 131 (351)
......+.++|++++++. +.++.++.+... .+.++++. ..+|++.. +.+. ... +.+....+.+.++...-.
T Consensus 40 ~~~~~~l~~vAk~~kgk~--i~Fv~vd~~~~~-~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 40 NKYLEILKSVAEKFKKKP--WGWLWTEAGAQL-DLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred HHHHHHHHHHHHHhcCCc--EEEEEEeCcccH-HHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHH
Confidence 356788999999998764 444444444433 36666664 34788776 4433 222 334445555555554433
No 464
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.96 E-value=16 Score=31.96 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=33.8
Q ss_pred cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhc
Q 018726 150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKT 194 (351)
Q Consensus 150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~ 194 (351)
..++.....-+..++++++.|....||+|+...+.+.+.+....+
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 444544455555568999999999999999999988886666653
No 465
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=66.75 E-value=12 Score=31.98 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=58.0
Q ss_pred cCCCcceeec---ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceee
Q 018726 150 SRDHRKITVS---ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAI 226 (351)
Q Consensus 150 ~~~g~~~~l~---~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 226 (351)
-.+|+.+.-. +++.-.++|..|-+.-+-|..+...+.=|+.+|+. +.+..|...
T Consensus 143 l~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-----vKFckikss------------------ 199 (273)
T KOG3171|consen 143 LETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-----VKFCKIKSS------------------ 199 (273)
T ss_pred eccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-----eeEEEeeec------------------
Confidence 4555554321 22334677788988888899999999999999964 555555443
Q ss_pred ccCchhhHHHHHHcCcCceeeEEEECCCCceEe
Q 018726 227 PYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS 259 (351)
Q Consensus 227 ~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~ 259 (351)
.....++|...++|++.|+ +.|.++.
T Consensus 200 ------~~gas~~F~~n~lP~LliY-kgGeLIg 225 (273)
T KOG3171|consen 200 ------NTGASDRFSLNVLPTLLIY-KGGELIG 225 (273)
T ss_pred ------cccchhhhcccCCceEEEe-eCCchhH
Confidence 2466788999999999999 7887764
No 466
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=66.62 E-value=0.78 Score=41.28 Aligned_cols=74 Identities=12% Similarity=0.302 Sum_probs=49.7
Q ss_pred cEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcC
Q 018726 164 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 243 (351)
Q Consensus 164 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~ 243 (351)
-++-+.||++|||..+...|.+.-.+..|.. |-...++.. . + .-.+...|++.
T Consensus 77 ~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-------i~h~~vee~----~---~-------------lpsv~s~~~~~ 129 (319)
T KOG2640|consen 77 DYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-------IQHFAVEES----Q---A-------------LPSVFSSYGIH 129 (319)
T ss_pred CcccccchhcccCcccccCcccchhhhhccc-------cccccHHHH----h---h-------------cccchhccccc
Confidence 4788899999999999888888777766652 212222221 1 1 13566778888
Q ss_pred ceeeEEEECCCCceEeccccc
Q 018726 244 GIPALVLIGPDGKTISTNGKE 264 (351)
Q Consensus 244 ~~P~~~lid~~G~v~~~~~~~ 264 (351)
+.|+..+.++.=..+++..++
T Consensus 130 ~~ps~~~~n~t~~~~~~~~r~ 150 (319)
T KOG2640|consen 130 SEPSNLMLNQTCPASYRGERD 150 (319)
T ss_pred cCCcceeeccccchhhccccc
Confidence 888888887776666665444
No 467
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=66.55 E-value=32 Score=25.01 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=49.1
Q ss_pred cEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcC
Q 018726 164 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 243 (351)
Q Consensus 164 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~ 243 (351)
++++=.|.+..-+.++.....+.++.+++.. ..+.+=.|.+-.. .++++.+.+.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~---g~y~LeVIDv~~q-----------------------P~lAE~~~Iv 56 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ---GVYALKVIDVLKN-----------------------PQLAEEDKIL 56 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC---CceEEEEEEcccC-----------------------HhHHhHCCEE
Confidence 4566667777777899999899999887764 4466666666654 5899999999
Q ss_pred ceeeEEEECC
Q 018726 244 GIPALVLIGP 253 (351)
Q Consensus 244 ~~P~~~lid~ 253 (351)
++||++=.-|
T Consensus 57 ATPtLIK~~P 66 (87)
T TIGR02654 57 ATPTLSKILP 66 (87)
T ss_pred EecHHhhcCC
Confidence 9999887754
No 468
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=65.26 E-value=34 Score=25.89 Aligned_cols=67 Identities=10% Similarity=0.187 Sum_probs=43.4
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh---hHHHHHhcCC-ceeeec--ChHH
Q 018726 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFEEHFKCMP-WLAVPF--DETL 110 (351)
Q Consensus 41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~---~~~~~~~~~~-~~~~~~--~~~~ 110 (351)
..++++|.=.++.||-+.+....+++.++...+. +.+.++.+-..+. .+++.+++.- .|.+.+ +|+.
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~ 90 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKV 90 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEE
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEE
Confidence 4788888888999999999999999988876554 6788888877665 3666666442 566665 6653
No 469
>PRK12496 hypothetical protein; Provisional
Probab=65.12 E-value=4.7 Score=33.23 Aligned_cols=24 Identities=25% Similarity=0.627 Sum_probs=12.8
Q ss_pred eeeccccCCCc--eEEEEcCCCCCCC
Q 018726 316 YVCDCCKMRGR--FWAFSCDVCNYDL 339 (351)
Q Consensus 316 ~~Cd~C~~~~~--~~~~~c~~~~~~~ 339 (351)
+.|-+|++... ...-.|+.||..|
T Consensus 128 ~~C~gC~~~~~~~~~~~~C~~CG~~~ 153 (164)
T PRK12496 128 KVCKGCKKKYPEDYPDDVCEICGSPV 153 (164)
T ss_pred EECCCCCccccCCCCCCcCCCCCChh
Confidence 56666666432 2334566666543
No 470
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=64.63 E-value=4.6 Score=25.22 Aligned_cols=25 Identities=24% Similarity=0.660 Sum_probs=18.5
Q ss_pred ceeeccccCC---CceEEEEcCCCCCCC
Q 018726 315 AYVCDCCKMR---GRFWAFSCDVCNYDL 339 (351)
Q Consensus 315 ~~~Cd~C~~~---~~~~~~~c~~~~~~~ 339 (351)
.|+|..|+.. -.+-.-+|.+|++.+
T Consensus 2 ~Y~C~~Cg~~~~~~~~~~irC~~CG~rI 29 (44)
T smart00659 2 IYICGECGRENEIKSKDVVRCRECGYRI 29 (44)
T ss_pred EEECCCCCCEeecCCCCceECCCCCceE
Confidence 4889999884 345568899998753
No 471
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=64.10 E-value=5.5 Score=32.90 Aligned_cols=87 Identities=8% Similarity=0.149 Sum_probs=51.2
Q ss_pred ceeeecccCcceeeCCCCc-ccccCCCCCe-EEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHH
Q 018726 16 FLTVLASEGVEFLLSRQGK-VPLSSCGGKT-ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93 (351)
Q Consensus 16 ~~~~~~~~~~~~l~~~~g~-~~~~~~~gk~-v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 93 (351)
+...+.......+...++. +..-.-.+++ +++.|...-......+...+..++++++++ +.++.++.+. .....
T Consensus 67 l~~fI~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~-~~~~~ 142 (184)
T PF13848_consen 67 LKKFIKKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADD-FPRLL 142 (184)
T ss_dssp HHHHHHHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTT-THHHH
T ss_pred HHHHHHHhccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHH-hHHHH
Confidence 3344444444444444444 2222224545 777777666667788888899999988765 4555555552 23445
Q ss_pred HHHhcC--Cceeeec
Q 018726 94 EHFKCM--PWLAVPF 106 (351)
Q Consensus 94 ~~~~~~--~~~~~~~ 106 (351)
+.++.- .+|++.+
T Consensus 143 ~~~~i~~~~~P~~vi 157 (184)
T PF13848_consen 143 KYFGIDEDDLPALVI 157 (184)
T ss_dssp HHTTTTTSSSSEEEE
T ss_pred HHcCCCCccCCEEEE
Confidence 555443 5778775
No 472
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=63.90 E-value=12 Score=31.07 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=27.4
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726 48 FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (351)
Q Consensus 48 ~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d 86 (351)
.|.-|.|+.|-.+.|.+.++..++... +.+.+|-+-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~---i~~~~i~~~ 37 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK---IEFRFIPGG 37 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT---EEEEEEE--
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc---EEEEEEEcc
Confidence 588999999999999999999999876 777776653
No 473
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=63.50 E-value=5.7 Score=21.27 Aligned_cols=20 Identities=25% Similarity=0.808 Sum_probs=13.0
Q ss_pred eccccCC----CceEEEEcCCCCC
Q 018726 318 CDCCKMR----GRFWAFSCDVCNY 337 (351)
Q Consensus 318 Cd~C~~~----~~~~~~~c~~~~~ 337 (351)
|..|+.. ..+-.|.|..||+
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceEeCCCCCC
Confidence 4556542 3366789988875
No 474
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=63.19 E-value=1 Score=43.77 Aligned_cols=43 Identities=21% Similarity=0.579 Sum_probs=31.7
Q ss_pred cceeeee-cCCceeeccccCCCceEE---EEcCCCCCCCCccccCcc
Q 018726 305 EHELKLD-MAKAYVCDCCKMRGRFWA---FSCDVCNYDLHPKCVEGI 347 (351)
Q Consensus 305 ~~~l~l~-~~~~~~Cd~C~~~~~~~~---~~c~~~~~~~~~~c~~~~ 347 (351)
||.+..- ...+.+|-+|++...|.. -+|++|.|.-|..||...
T Consensus 267 PHTf~vHSY~rpTVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~v 313 (888)
T KOG4236|consen 267 PHTFIVHSYTRPTVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMKV 313 (888)
T ss_pred CeeEEEeeccCchHHHHHHHHHHHHHhcCcccccCCcchhhhhhhhc
Confidence 3444432 335678999999755553 689999999999999854
No 475
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=62.97 E-value=12 Score=28.00 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=29.0
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC---hhhHHHHHhcCC
Q 018726 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD---ENGFEEHFKCMP 100 (351)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~---~~~~~~~~~~~~ 100 (351)
..|+.++|+.|++....+++ .| +.+.++++..+ .+.+.+..+..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~--i~~~~idi~~~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HG--IEYEFIDYLKEPPTKEELKELLAKLG 49 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cC--CCcEEEeeccCCCCHHHHHHHHHhcC
Confidence 46788999999998766664 34 55667777543 334555554443
No 476
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=62.72 E-value=5.8 Score=30.26 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=15.6
Q ss_pred EEEecCCChhhHHhHHHHHH
Q 018726 168 LYFGAHWCPPCRSFTSQLIE 187 (351)
Q Consensus 168 l~F~a~~C~~C~~~~~~l~~ 187 (351)
..|..++|+.|++....|++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 36788999999998766644
No 477
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=62.29 E-value=17 Score=27.90 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=29.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh---hHHHHHhcC
Q 018726 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFEEHFKCM 99 (351)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~---~~~~~~~~~ 99 (351)
..|+.++|+.|++....+.+ .| +.+.++++..+.. .+.+.++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~--i~~~~idi~~~~~~~~el~~l~~~~ 48 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NG--IEYQFIDIGEDGPTREELLDILSLL 48 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cC--CceEEEecCCChhhHHHHHHHHHHc
Confidence 35788999999998877665 34 5677787765433 344444444
No 478
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=61.64 E-value=7.3 Score=38.21 Aligned_cols=84 Identities=18% Similarity=0.427 Sum_probs=46.8
Q ss_pred eccccceeeccCCcCCCCchhhHHHHHHHHHH-----hcCcCCCccccCCCcceeee-ecCCceeeccccCCCceE---E
Q 018726 259 STNGKEMISLYGAKAFPFTESRIAEIETALKK-----EGDALPREVKDVKHEHELKL-DMAKAYVCDCCKMRGRFW---A 329 (351)
Q Consensus 259 ~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~-----~~~~~p~~~~~~~~~~~l~l-~~~~~~~Cd~C~~~~~~~---~ 329 (351)
++.+-.++...|.+++.|.=. -+++.+++.+ ...--|+...+..| .... .....-.|+.|+.-..|. -
T Consensus 475 ws~~f~lI~tqg~ngl~fy~K-te~~kkkWmeqfema~SNi~Pdya~an~H--~fqmhtF~~~tsCkvC~mllrGtfYQG 551 (865)
T KOG2996|consen 475 WSYGFYLIHTQGRNGLEFYCK-TEDLKKKWMEQFEMAKSNISPDYARANNH--DFQMHTFKNTTSCKVCQMLLRGTFYQG 551 (865)
T ss_pred eeeeEEEEEEcCCcceEEEEe-cHHHHHHHHHHHHHHHhcCCcccccccCc--ceEEEeccCCcchHHHHHHhhhhhhcc
Confidence 344444555555555554422 2334333332 22333443333333 2222 234566899999964444 5
Q ss_pred EEcCCCCCCCCccccC
Q 018726 330 FSCDVCNYDLHPKCVE 345 (351)
Q Consensus 330 ~~c~~~~~~~~~~c~~ 345 (351)
|.|..|+-+.|..|.-
T Consensus 552 Y~C~~c~~~ahkecl~ 567 (865)
T KOG2996|consen 552 YKCEKCGADAHKECLG 567 (865)
T ss_pred eeeeeccccHHHHhcc
Confidence 7899999999999965
No 480
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=61.04 E-value=16 Score=27.31 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=15.8
Q ss_pred EEEecCCChhhHHhHHHHHH
Q 018726 168 LYFGAHWCPPCRSFTSQLIE 187 (351)
Q Consensus 168 l~F~a~~C~~C~~~~~~l~~ 187 (351)
..|..++|+.|++....|++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46888999999998766644
No 481
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=60.31 E-value=5.2 Score=26.53 Aligned_cols=26 Identities=19% Similarity=0.525 Sum_probs=18.3
Q ss_pred CCceeeccccCC---------CceEEEEcCCCCCC
Q 018726 313 AKAYVCDCCKMR---------GRFWAFSCDVCNYD 338 (351)
Q Consensus 313 ~~~~~Cd~C~~~---------~~~~~~~c~~~~~~ 338 (351)
.-.|.|-.|+|. -.|-.|+|..|||.
T Consensus 25 ~v~F~CPnCGe~~I~Rc~~CRk~g~~Y~Cp~CGF~ 59 (61)
T COG2888 25 AVKFPCPNCGEVEIYRCAKCRKLGNPYRCPKCGFE 59 (61)
T ss_pred eeEeeCCCCCceeeehhhhHHHcCCceECCCcCcc
Confidence 345778888853 34668899888873
No 482
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=59.32 E-value=1.1e+02 Score=29.70 Aligned_cols=107 Identities=10% Similarity=0.072 Sum_probs=65.6
Q ss_pred CCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH------------------
Q 018726 151 RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK------------------ 212 (351)
Q Consensus 151 ~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~------------------ 212 (351)
.+++.+++.+++|..-+|...++- .++...+...+...+++.+ .+|-||-|..+.+.+
T Consensus 284 ~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~---r~VlvVPv~~~~~~~~~~~~~gfg~~s~~a~~~ 359 (453)
T PLN03098 284 STNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLK---RGVLLIPVVWGENKDPQPKKKGFGRSSKAAASL 359 (453)
T ss_pred cCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHH---cCcEEEEEecCCCCccccccccccccchhhhcC
Confidence 357789999999976666666664 4566666666777777766 788888777763211
Q ss_pred -----HHH---------hhh-ccCCceeeccCchh-hHHHHH---HcCcC-ceeeEEEECCCCceEecc
Q 018726 213 -----EFD---------LNH-SIMPWLAIPYEDRA-RQDLCR---IFNIK-GIPALVLIGPDGKTISTN 261 (351)
Q Consensus 213 -----~~~---------~~~-~~~~~~~~~~~~d~-~~~~~~---~~~i~-~~P~~~lid~~G~v~~~~ 261 (351)
++. ... ....|...|+..+. ..-+.+ .=|+. +.|.++.+-.||+|+..+
T Consensus 360 p~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~q~~~~gv~~~~~vyi~lr~dGrVr~SG 428 (453)
T PLN03098 360 PSIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRSG 428 (453)
T ss_pred CCccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHHHHHhcCCCCCCceEEEEeeCCeEecCC
Confidence 111 111 13458888886542 111211 12332 347788888999999773
No 483
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=58.67 E-value=2.8 Score=24.24 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=14.6
Q ss_pred eeeccccCC---CceEEEEcCCCCCC
Q 018726 316 YVCDCCKMR---GRFWAFSCDVCNYD 338 (351)
Q Consensus 316 ~~Cd~C~~~---~~~~~~~c~~~~~~ 338 (351)
|+|..|+.. ..+=.-+|..|+|.
T Consensus 1 Y~C~~Cg~~~~~~~~~~irC~~CG~R 26 (32)
T PF03604_consen 1 YICGECGAEVELKPGDPIRCPECGHR 26 (32)
T ss_dssp EBESSSSSSE-BSTSSTSSBSSSS-S
T ss_pred CCCCcCCCeeEcCCCCcEECCcCCCe
Confidence 678888874 22223488888875
No 484
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.79 E-value=15 Score=30.77 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=42.0
Q ss_pred eeCCCCc-ccccCC--CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEE
Q 018726 28 LLSRQGK-VPLSSC--GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84 (351)
Q Consensus 28 l~~~~g~-~~~~~~--~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~ 84 (351)
..+..|+ ++.+++ +++.|+...--+.|--|+.....+.++..-+...| +..++|-
T Consensus 34 ~l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~G--v~Li~vg 91 (197)
T KOG4498|consen 34 NLDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELG--VVLIAVG 91 (197)
T ss_pred hhhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhC--CEEEEEe
Confidence 4778888 999886 55666666666999999999999999966677777 5555554
No 485
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=57.37 E-value=23 Score=27.92 Aligned_cols=45 Identities=9% Similarity=0.231 Sum_probs=28.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHhcC
Q 018726 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFKCM 99 (351)
Q Consensus 46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~~~ 99 (351)
+..|+.++|+.|++....+.+ .| +.+.++++..+. +.+.+.++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~g--i~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HD--IPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cC--CCcEEeeccCChhhHHHHHHHHHHh
Confidence 456778999999997766553 34 556677765543 3344444443
No 486
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=57.29 E-value=28 Score=26.35 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=15.9
Q ss_pred EecCCChhhHHhHHHHHHH
Q 018726 170 FGAHWCPPCRSFTSQLIEV 188 (351)
Q Consensus 170 F~a~~C~~C~~~~~~l~~l 188 (351)
||..+||.|......+.+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~ 20 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR 20 (114)
T ss_pred EECCCCHhHHHHHHHHHhc
Confidence 7888999999998777665
No 487
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=57.20 E-value=21 Score=26.94 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=15.9
Q ss_pred EEEecCCChhhHHhHHHHHH
Q 018726 168 LYFGAHWCPPCRSFTSQLIE 187 (351)
Q Consensus 168 l~F~a~~C~~C~~~~~~l~~ 187 (351)
..|+.++|+.|++....|.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46888999999998766643
No 488
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=56.41 E-value=17 Score=27.68 Aligned_cols=45 Identities=13% Similarity=0.302 Sum_probs=28.8
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHhcCC
Q 018726 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFKCMP 100 (351)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~~~~ 100 (351)
..|+.++|+.|++....+++ +| +.+.++++..+. +.+.+.++..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~--i~~~~idi~~~~~~~~el~~~~~~~~ 49 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HG--VDYTAIDIVEEPPSKEELKKWLEKSG 49 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cC--CceEEecccCCcccHHHHHHHHHHcC
Confidence 35778999999998877664 34 556667665433 34555555443
No 489
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.78 E-value=5.3 Score=37.81 Aligned_cols=51 Identities=25% Similarity=0.520 Sum_probs=37.0
Q ss_pred CCCccccCCCcceeeeec-CCceeeccccCC--Cce-EEEEcCCCCCCCCccccC
Q 018726 295 LPREVKDVKHEHELKLDM-AKAYVCDCCKMR--GRF-WAFSCDVCNYDLHPKCVE 345 (351)
Q Consensus 295 ~p~~~~~~~~~~~l~l~~-~~~~~Cd~C~~~--~~~-~~~~c~~~~~~~~~~c~~ 345 (351)
+-++-+++...|...... -.+..|+.|+.- |+| =-|+|++|-|-+|..|-.
T Consensus 35 lrqKnvhevk~HkF~aRFFKqPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChe 89 (683)
T KOG0696|consen 35 LRQKNVHEVKSHKFIARFFKQPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHE 89 (683)
T ss_pred hhhcchhhhccceeeehhccCCchhhhhhhheeccccCceeeeEEeehhhhhhcc
Confidence 444667777788777663 345679999884 222 248999999999999954
No 490
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.17 E-value=23 Score=29.73 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=43.8
Q ss_pred ecCCCcceeecccC--CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018726 149 LSRDHRKITVSELA--GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207 (351)
Q Consensus 149 ~~~~g~~~~l~~~~--gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~ 207 (351)
++..|+.+...++- .+.+|...--+.|-.|+.+...|.++..-+.+ .++.+++|.-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~---~Gv~Li~vg~ 92 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDE---LGVVLIAVGP 92 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHH---hCCEEEEEec
Confidence 47778889888873 35666666788999999999999999666665 7777777764
No 491
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.16 E-value=31 Score=29.73 Aligned_cols=73 Identities=18% Similarity=0.351 Sum_probs=47.5
Q ss_pred CCCCcccccCC-CCCeEEE---EEeCC----CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCc
Q 018726 30 SRQGKVPLSSC-GGKTICL---FFSAN----WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (351)
Q Consensus 30 ~~~g~~~~~~~-~gk~v~v---~F~a~----wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~ 101 (351)
..+|+.+|+++ .|+--|| .+++| -|+-|..++.++...-..+...+ +.+++|+-- --+.+..+-+.|+|
T Consensus 59 ~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRA-Pl~~l~~~k~rmGW 135 (247)
T COG4312 59 TENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRA-PLEELVAYKRRMGW 135 (247)
T ss_pred cCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecC-cHHHHHHHHHhcCC
Confidence 55666887774 5544333 23344 59999999999977777787765 566666543 23356777778888
Q ss_pred eeeec
Q 018726 102 LAVPF 106 (351)
Q Consensus 102 ~~~~~ 106 (351)
. ++.
T Consensus 136 ~-f~w 139 (247)
T COG4312 136 Q-FPW 139 (247)
T ss_pred c-cee
Confidence 4 554
No 492
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=54.92 E-value=23 Score=29.41 Aligned_cols=40 Identities=30% Similarity=0.616 Sum_probs=0.0
Q ss_pred hhhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHH
Q 018726 231 RARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK 289 (351)
Q Consensus 231 d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~ 289 (351)
..+...+..+|+.++|++++ +|+ +. ++|... ++.+.+.++
T Consensus 154 ~~~~~~a~~~gv~GvP~~vv---~g~--~~-------~~G~~~-------~~~l~~~l~ 193 (193)
T PF01323_consen 154 EEDTAEARQLGVFGVPTFVV---NGK--YR-------FFGADR-------LDELEDALQ 193 (193)
T ss_dssp HHHHHHHHHTTCSSSSEEEE---TTT--EE-------EESCSS-------HHHHHHHH-
T ss_pred HHHHHHHHHcCCcccCEEEE---CCE--EE-------EECCCC-------HHHHHHHhC
No 493
>PHA00626 hypothetical protein
Probab=54.90 E-value=8.8 Score=25.14 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=9.7
Q ss_pred eEEEEcCCCCCC
Q 018726 327 FWAFSCDVCNYD 338 (351)
Q Consensus 327 ~~~~~c~~~~~~ 338 (351)
.-+|.|+.|+|.
T Consensus 21 snrYkCkdCGY~ 32 (59)
T PHA00626 21 SDDYVCCDCGYN 32 (59)
T ss_pred CcceEcCCCCCe
Confidence 357999999974
No 494
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=54.30 E-value=5.5 Score=22.97 Aligned_cols=20 Identities=35% Similarity=1.024 Sum_probs=16.7
Q ss_pred CceeeccccCCCceEEEEcCC
Q 018726 314 KAYVCDCCKMRGRFWAFSCDV 334 (351)
Q Consensus 314 ~~~~Cd~C~~~~~~~~~~c~~ 334 (351)
..|+|-.|++.| .|.-.|.+
T Consensus 7 ~~Y~C~~C~~~G-H~i~dCP~ 26 (32)
T PF13696_consen 7 PGYVCHRCGQKG-HWIQDCPT 26 (32)
T ss_pred CCCEeecCCCCC-ccHhHCCC
Confidence 569999999999 78877765
No 495
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=54.15 E-value=16 Score=32.22 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=28.0
Q ss_pred CCcEEEEEEecCCChhhHHhHHHHHHHHHHhh
Q 018726 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELK 193 (351)
Q Consensus 162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~ 193 (351)
.||+.+++..+-|||.|..+.-.|--...+|.
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcC
Confidence 58999999999999999999887777777775
No 496
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=53.79 E-value=29 Score=26.61 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=22.4
Q ss_pred EEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018726 168 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD 210 (351)
Q Consensus 168 l~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~ 210 (351)
..|+.++|+.|++....|.+ .++.+..+++..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~----------~~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA----------NGIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH----------cCCceEEEecCCC
Confidence 36788999999998766644 3345556666543
No 497
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=53.71 E-value=48 Score=25.16 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=34.9
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHH---HhhcCCcEEEEEEEecCChh-hHHHHHhcCC--ceeeec
Q 018726 42 GKTICLFFSANWCRPCKTFTPQLVQLYDT---LRTRGTELEVIFISFDHDEN-GFEEHFKCMP--WLAVPF 106 (351)
Q Consensus 42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~---~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~--~~~~~~ 106 (351)
+.+..+.|+.+ ..-......+.+++++ ++++ +.||.+|.+.. ...++++.-. +|.+.+
T Consensus 16 ~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgk-----i~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i 79 (111)
T cd03072 16 GLPFLILFHDK--DDLESLKEFKQAVARQLISEKGA-----INFLTADGDKFRHPLLHLGKTPADLPVIAI 79 (111)
T ss_pred CCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCce-----EEEEEEechHhhhHHHHcCCCHhHCCEEEE
Confidence 33444455522 2246788999999999 8765 55555555433 2555555443 677777
No 498
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=53.38 E-value=9.2 Score=25.43 Aligned_cols=25 Identities=20% Similarity=0.662 Sum_probs=15.8
Q ss_pred CCceeeccccCC---------CceEEEEcCCCCC
Q 018726 313 AKAYVCDCCKMR---------GRFWAFSCDVCNY 337 (351)
Q Consensus 313 ~~~~~Cd~C~~~---------~~~~~~~c~~~~~ 337 (351)
.-.|.|-.|++. -.+-.|.|..|||
T Consensus 23 ~~~F~CPnCG~~~I~RC~~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 23 AVKFLCPNCGEVIIYRCEKCRKQSNPYTCPKCGF 56 (59)
T ss_pred cCEeeCCCCCCeeEeechhHHhcCCceECCCCCC
Confidence 445677777664 2345677777776
No 499
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=52.94 E-value=30 Score=27.21 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=26.5
Q ss_pred EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---CHHHHHhhhcc
Q 018726 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKEFDLNHSI 220 (351)
Q Consensus 167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~~ 220 (351)
+..|..++|+.|++....|++ .++.+..+++.. +.+++...++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~----------~gi~~~~idi~~~~~~~~eL~~~l~~ 48 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE----------HDIPFTERNIFSSPLTIDEIKQILRM 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH----------cCCCcEEeeccCChhhHHHHHHHHHH
Confidence 456788999999997766543 334444555443 23455555553
No 500
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=52.89 E-value=17 Score=25.15 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=16.2
Q ss_pred ceeeeecCCceeeccccCCCceEEEEcCCCCC
Q 018726 306 HELKLDMAKAYVCDCCKMRGRFWAFSCDVCNY 337 (351)
Q Consensus 306 ~~l~l~~~~~~~Cd~C~~~~~~~~~~c~~~~~ 337 (351)
.+|.|.. +.|.|+.|++. .-..-.|.+|+-
T Consensus 9 ~~L~~~~-~~~~C~~C~~~-~~~~a~CPdC~~ 38 (70)
T PF07191_consen 9 QELEWQG-GHYHCEACQKD-YKKEAFCPDCGQ 38 (70)
T ss_dssp SBEEEET-TEEEETTT--E-EEEEEE-TTT-S
T ss_pred CccEEeC-CEEECcccccc-ceecccCCCccc
Confidence 4456553 67888888774 344556777773
Done!