Query 018727
Match_columns 351
No_of_seqs 333 out of 2093
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 03:32:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2814 AraJ Arabinose efflux 100.0 4.2E-28 9.1E-33 212.3 22.0 261 38-348 10-273 (394)
2 TIGR02332 HpaX 4-hydroxyphenyl 100.0 4.8E-27 1E-31 214.6 22.5 284 39-343 6-299 (412)
3 COG2271 UhpC Sugar phosphate p 100.0 6.5E-28 1.4E-32 208.6 12.8 279 39-345 27-310 (448)
4 PRK14995 methyl viologen resis 100.0 2.2E-26 4.7E-31 215.2 23.0 283 40-349 5-326 (495)
5 PRK03545 putative arabinose tr 99.9 4E-26 8.8E-31 207.4 21.7 256 41-348 9-267 (390)
6 PRK11663 regulatory protein Uh 99.9 2E-26 4.4E-31 212.1 19.9 276 43-348 25-305 (434)
7 TIGR00903 2A0129 major facilit 99.9 2.9E-26 6.3E-31 205.7 20.1 237 54-338 4-241 (368)
8 PRK10406 alpha-ketoglutarate t 99.9 5.4E-26 1.2E-30 209.2 21.9 271 41-349 22-310 (432)
9 TIGR00893 2A0114 d-galactonate 99.9 1.9E-26 4.2E-31 209.4 18.2 271 51-348 4-281 (399)
10 PRK09556 uhpT sugar phosphate 99.9 5.6E-27 1.2E-31 217.8 14.6 274 45-343 33-314 (467)
11 PRK10213 nepI ribonucleoside t 99.9 2.5E-25 5.5E-30 202.1 23.4 256 40-348 19-278 (394)
12 TIGR00891 2A0112 putative sial 99.9 2.3E-25 4.9E-30 203.4 22.8 286 38-349 9-305 (405)
13 KOG2615 Permease of the major 99.9 1.5E-26 3.2E-31 196.7 13.7 270 58-342 42-316 (451)
14 PRK15403 multidrug efflux syst 99.9 1.7E-25 3.7E-30 204.4 21.7 247 46-338 21-269 (413)
15 PRK12307 putative sialic acid 99.9 2.8E-25 6E-30 204.4 20.6 265 40-342 17-285 (426)
16 TIGR00711 efflux_EmrB drug res 99.9 3.9E-25 8.4E-30 206.8 21.6 280 43-349 4-322 (485)
17 TIGR00881 2A0104 phosphoglycer 99.9 5.1E-26 1.1E-30 205.6 14.8 267 49-343 3-272 (379)
18 PLN00028 nitrate transmembrane 99.9 8.5E-25 1.9E-29 203.3 23.2 272 40-343 35-308 (476)
19 TIGR00710 efflux_Bcr_CflA drug 99.9 3.8E-25 8.3E-30 200.6 19.9 255 42-343 6-262 (385)
20 PRK10133 L-fucose transporter; 99.9 9.1E-25 2E-29 200.7 21.8 272 41-343 26-315 (438)
21 PRK10091 MFS transport protein 99.9 9.3E-25 2E-29 197.9 21.1 251 41-343 3-255 (382)
22 TIGR00886 2A0108 nitrite extru 99.9 1E-24 2.2E-29 196.5 20.9 279 43-349 3-292 (366)
23 TIGR00894 2A0114euk Na(+)-depe 99.9 6E-25 1.3E-29 204.3 19.4 272 40-342 18-316 (465)
24 TIGR00900 2A0121 H+ Antiporter 99.9 5.3E-25 1.1E-29 198.0 18.3 257 46-343 4-267 (365)
25 PRK10642 proline/glycine betai 99.9 9E-25 1.9E-29 204.1 20.2 285 41-349 16-317 (490)
26 PF07690 MFS_1: Major Facilita 99.9 6.6E-25 1.4E-29 196.5 18.4 254 47-340 2-260 (352)
27 PRK10504 putative transporter; 99.9 4.7E-24 1E-28 198.7 24.5 281 41-349 10-328 (471)
28 PRK09705 cynX putative cyanate 99.9 5.3E-24 1.2E-28 193.5 23.4 234 58-343 26-260 (393)
29 PRK11551 putative 3-hydroxyphe 99.9 2.9E-24 6.3E-29 196.4 20.6 261 39-343 13-275 (406)
30 PRK11195 lysophospholipid tran 99.9 2.3E-24 5E-29 195.8 19.8 256 42-342 4-260 (393)
31 PRK15034 nitrate/nitrite trans 99.9 5.5E-24 1.2E-28 192.8 21.8 236 38-312 31-282 (462)
32 PRK03699 putative transporter; 99.9 1E-23 2.2E-28 191.9 23.2 261 40-349 6-272 (394)
33 TIGR00805 oat sodium-independe 99.9 7.1E-25 1.5E-29 208.8 15.9 284 45-342 37-386 (633)
34 TIGR00890 2A0111 Oxalate/Forma 99.9 2.6E-24 5.7E-29 194.2 18.7 247 56-349 18-271 (377)
35 PRK03633 putative MFS family t 99.9 1.7E-23 3.6E-28 189.7 22.6 249 41-343 6-255 (381)
36 KOG1330 Sugar transporter/spin 99.9 1.1E-25 2.3E-30 196.8 7.9 276 34-344 26-304 (493)
37 PRK15402 multidrug efflux syst 99.9 1.3E-23 2.8E-28 192.1 21.1 250 45-340 17-268 (406)
38 PRK11652 emrD multidrug resist 99.9 1.3E-23 2.8E-28 191.3 20.6 261 39-348 6-269 (394)
39 PRK15075 citrate-proton sympor 99.9 1.9E-23 4.1E-28 192.5 21.7 270 41-349 15-305 (434)
40 COG2223 NarK Nitrate/nitrite t 99.9 6E-24 1.3E-28 184.4 16.3 260 38-343 11-274 (417)
41 PRK11043 putative transporter; 99.9 2.4E-23 5.2E-28 190.0 20.9 245 45-340 10-255 (401)
42 TIGR00879 SP MFS transporter, 99.9 1.1E-23 2.4E-28 196.2 18.8 173 47-241 34-221 (481)
43 PRK10473 multidrug efflux syst 99.9 3.3E-23 7.1E-28 188.5 21.1 250 45-342 7-258 (392)
44 PRK10077 xylE D-xylose transpo 99.9 6.6E-23 1.4E-27 191.5 23.4 188 41-242 12-220 (479)
45 PRK09952 shikimate transporter 99.9 5.4E-23 1.2E-27 189.5 21.6 277 41-349 22-317 (438)
46 PRK11102 bicyclomycin/multidru 99.9 1.3E-23 2.7E-28 190.2 17.1 244 55-343 5-250 (377)
47 PRK11273 glpT sn-glycerol-3-ph 99.9 1.2E-23 2.7E-28 194.6 17.3 263 48-340 36-306 (452)
48 TIGR00892 2A0113 monocarboxyla 99.9 7.4E-23 1.6E-27 189.3 22.2 275 40-343 18-296 (455)
49 TIGR00897 2A0118 polyol permea 99.9 8.2E-23 1.8E-27 186.4 22.3 258 41-342 13-276 (402)
50 TIGR00887 2A0109 phosphate:H+ 99.9 2.7E-23 5.7E-28 194.9 18.9 204 40-244 15-232 (502)
51 TIGR01299 synapt_SV2 synaptic 99.9 1.7E-23 3.8E-28 200.2 17.5 188 44-244 170-362 (742)
52 TIGR00895 2A0115 benzoate tran 99.9 5.6E-23 1.2E-27 187.0 20.0 275 41-343 17-305 (398)
53 KOG2532 Permease of the major 99.9 3.1E-23 6.7E-28 189.1 17.2 244 70-343 67-314 (466)
54 PRK03893 putative sialic acid 99.9 1.6E-22 3.5E-27 189.7 22.5 181 39-241 18-199 (496)
55 TIGR00885 fucP L-fucose:H+ sym 99.9 1.4E-22 3E-27 184.7 21.1 278 43-350 5-301 (410)
56 TIGR00712 glpT glycerol-3-phos 99.9 3.5E-23 7.6E-28 190.9 17.1 273 43-343 29-307 (438)
57 KOG2533 Permease of the major 99.9 3.4E-23 7.5E-28 189.2 14.9 260 62-343 67-329 (495)
58 KOG0569 Permease of the major 99.9 7.7E-22 1.7E-26 178.2 21.0 268 68-351 46-338 (485)
59 PRK05122 major facilitator sup 99.9 5.1E-22 1.1E-26 181.2 20.1 151 39-195 13-173 (399)
60 TIGR00896 CynX cyanate transpo 99.9 8.5E-22 1.8E-26 176.8 20.9 237 56-343 15-252 (355)
61 PRK10054 putative transporter; 99.9 6.4E-22 1.4E-26 179.9 19.8 252 41-340 7-261 (395)
62 TIGR00899 2A0120 sugar efflux 99.9 8.9E-22 1.9E-26 177.9 20.7 252 48-349 4-266 (375)
63 TIGR00898 2A0119 cation transp 99.9 2E-22 4.4E-27 189.4 16.9 258 62-350 110-387 (505)
64 PRK12382 putative transporter; 99.9 2.2E-21 4.7E-26 176.6 22.8 149 41-195 15-173 (392)
65 PRK09874 drug efflux system pr 99.9 3.1E-21 6.6E-26 176.5 23.2 182 41-239 14-196 (408)
66 PRK11646 multidrug resistance 99.9 1.7E-21 3.8E-26 177.4 21.2 242 45-338 14-258 (400)
67 TIGR00902 2A0127 phenyl propri 99.9 2.9E-21 6.3E-26 175.0 21.4 249 44-341 7-258 (382)
68 PRK10489 enterobactin exporter 99.9 4E-22 8.8E-27 182.8 15.5 253 45-343 21-279 (417)
69 TIGR00883 2A0106 metabolite-pr 99.9 3.6E-21 7.8E-26 174.8 18.8 260 52-349 4-286 (394)
70 cd06174 MFS The Major Facilita 99.9 8.1E-21 1.8E-25 169.7 19.9 234 45-349 3-242 (352)
71 KOG0254 Predicted transporter 99.9 7.8E-21 1.7E-25 178.4 20.4 280 57-351 63-362 (513)
72 PRK11128 putative 3-phenylprop 99.9 9.1E-21 2E-25 171.8 19.1 241 50-341 13-258 (382)
73 COG0738 FucP Fucose permease [ 99.9 1.3E-20 2.8E-25 162.7 18.8 271 42-343 14-292 (422)
74 PRK11010 ampG muropeptide tran 99.9 2.4E-20 5.2E-25 173.9 20.5 263 41-349 12-290 (491)
75 PRK11902 ampG muropeptide tran 99.9 4.6E-20 9.9E-25 168.4 19.6 240 47-333 5-255 (402)
76 TIGR00901 2A0125 AmpG-related 99.9 5.9E-20 1.3E-24 165.0 18.9 254 56-349 3-276 (356)
77 PRK08633 2-acyl-glycerophospho 99.8 7.3E-20 1.6E-24 188.1 20.6 280 41-348 9-295 (1146)
78 PRK06814 acylglycerophosphoeth 99.8 8.9E-20 1.9E-24 187.1 20.9 224 84-343 54-281 (1140)
79 KOG3764 Vesicular amine transp 99.8 2.8E-21 6E-26 165.8 8.1 212 84-338 108-321 (464)
80 TIGR00882 2A0105 oligosacchari 99.8 2.6E-19 5.7E-24 163.1 20.2 268 42-350 3-286 (396)
81 TIGR00924 yjdL_sub1_fam amino 99.8 7.3E-19 1.6E-23 163.2 23.1 175 41-237 10-192 (475)
82 PRK15011 sugar efflux transpor 99.8 1.3E-18 2.8E-23 158.4 22.7 254 44-349 18-283 (393)
83 TIGR00806 rfc RFC reduced fola 99.8 1.5E-18 3.1E-23 155.1 21.5 176 46-241 32-207 (511)
84 PRK10207 dipeptide/tripeptide 99.8 1.3E-18 2.9E-23 161.6 21.5 149 41-195 14-168 (489)
85 PF06609 TRI12: Fungal trichot 99.8 3.3E-18 7.2E-23 158.6 23.3 139 50-195 53-191 (599)
86 KOG2504 Monocarboxylate transp 99.8 2.4E-18 5.2E-23 159.0 21.0 278 38-344 43-354 (509)
87 PF05977 MFS_3: Transmembrane 99.8 1.4E-18 3E-23 161.4 18.5 261 39-343 8-274 (524)
88 PRK09528 lacY galactoside perm 99.8 1.2E-18 2.6E-23 160.0 17.9 270 41-350 10-294 (420)
89 PF00083 Sugar_tr: Sugar (and 99.8 4.7E-22 1E-26 184.3 -8.3 185 50-247 9-202 (451)
90 COG2807 CynX Cyanate permease 99.8 9E-17 2E-21 137.1 23.2 237 55-343 26-263 (395)
91 TIGR00889 2A0110 nucleoside tr 99.8 2.3E-17 5E-22 151.0 19.1 259 45-349 6-282 (418)
92 KOG0255 Synaptic vesicle trans 99.8 2E-17 4.4E-22 156.0 17.5 156 69-249 111-267 (521)
93 TIGR02718 sider_RhtX_FptX side 99.8 5.9E-17 1.3E-21 147.4 19.1 243 43-334 3-254 (390)
94 KOG0252 Inorganic phosphate tr 99.7 1.8E-17 3.8E-22 145.1 10.5 196 44-243 44-252 (538)
95 TIGR00792 gph sugar (Glycoside 99.7 3E-17 6.5E-22 151.6 11.7 245 57-340 15-274 (437)
96 PTZ00207 hypothetical protein; 99.7 2.2E-15 4.7E-20 140.8 22.2 129 57-193 43-179 (591)
97 TIGR01299 synapt_SV2 synaptic 99.7 7.5E-16 1.6E-20 148.1 17.6 141 85-242 598-739 (742)
98 PRK10642 proline/glycine betai 99.7 1.6E-15 3.5E-20 141.9 18.5 174 51-245 260-438 (490)
99 PRK15462 dipeptide/tripeptide 99.7 1.5E-15 3.3E-20 139.5 17.3 149 41-195 9-163 (493)
100 PRK09584 tppB putative tripept 99.7 1.7E-15 3.7E-20 141.5 17.1 149 41-195 21-175 (500)
101 KOG2325 Predicted transporter/ 99.7 2.3E-14 5E-19 129.1 20.9 198 36-244 29-237 (488)
102 PF03825 Nuc_H_symport: Nucleo 99.6 3.3E-14 7.2E-19 128.4 20.2 260 45-349 6-274 (400)
103 KOG0253 Synaptic vesicle trans 99.6 2E-14 4.3E-19 122.8 16.8 181 46-249 83-263 (528)
104 TIGR01301 GPH_sucrose GPH fami 99.6 1.2E-14 2.6E-19 133.1 16.2 251 39-311 2-287 (477)
105 TIGR00889 2A0110 nucleoside tr 99.6 6.3E-15 1.4E-19 135.0 14.4 175 59-243 226-409 (418)
106 TIGR00788 fbt folate/biopterin 99.6 4.9E-15 1.1E-19 137.4 13.1 269 41-342 26-307 (468)
107 PRK15011 sugar efflux transpor 99.6 4.2E-14 9.2E-19 128.7 17.6 157 59-238 234-392 (393)
108 PRK05122 major facilitator sup 99.6 4.2E-14 9.2E-19 129.0 16.8 161 57-241 232-393 (399)
109 PF03137 OATP: Organic Anion T 99.6 1.2E-16 2.5E-21 149.1 -0.2 289 45-345 7-364 (539)
110 PRK11551 putative 3-hydroxyphe 99.6 3.6E-14 7.9E-19 129.8 16.1 140 50-195 229-369 (406)
111 TIGR00880 2_A_01_02 Multidrug 99.6 1.1E-14 2.3E-19 112.2 10.6 135 88-238 4-140 (141)
112 TIGR00890 2A0111 Oxalate/Forma 99.6 1.9E-14 4E-19 129.9 13.8 140 50-195 214-356 (377)
113 cd06174 MFS The Major Facilita 99.6 1.3E-13 2.8E-18 123.1 16.9 164 50-235 184-350 (352)
114 PRK10429 melibiose:sodium symp 99.6 4.6E-14 9.9E-19 131.5 13.5 266 47-349 12-297 (473)
115 TIGR00902 2A0127 phenyl propri 99.6 1.6E-13 3.4E-18 124.5 16.2 148 41-195 205-354 (382)
116 KOG3626 Organic anion transpor 99.5 6.1E-14 1.3E-18 131.4 13.3 289 45-345 101-451 (735)
117 KOG2563 Permease of the major 99.5 8.7E-13 1.9E-17 116.0 19.3 268 45-348 49-327 (480)
118 TIGR00899 2A0120 sugar efflux 99.5 2.7E-13 5.9E-18 122.5 16.5 155 61-238 219-375 (375)
119 PRK09669 putative symporter Ya 99.5 1.9E-13 4E-18 126.5 15.2 233 40-308 8-255 (444)
120 PRK09528 lacY galactoside perm 99.5 7.9E-14 1.7E-18 128.1 12.6 131 84-230 264-396 (420)
121 PRK10489 enterobactin exporter 99.5 3.5E-13 7.7E-18 123.7 16.3 166 59-246 241-409 (417)
122 PF01306 LacY_symp: LacY proto 99.5 2.3E-13 5E-18 121.2 13.9 269 41-350 7-291 (412)
123 PRK09705 cynX putative cyanate 99.5 9.7E-13 2.1E-17 119.8 18.4 179 41-242 205-387 (393)
124 TIGR00893 2A0114 d-galactonate 99.5 4.6E-13 1E-17 121.5 16.0 148 41-195 215-372 (399)
125 PF13347 MFS_2: MFS/sugar tran 99.5 1.3E-13 2.7E-18 127.1 12.2 247 64-350 25-292 (428)
126 TIGR00892 2A0113 monocarboxyla 99.5 9.6E-14 2.1E-18 128.7 11.1 149 41-195 241-394 (455)
127 PRK03699 putative transporter; 99.5 4.6E-13 1E-17 122.0 15.4 174 42-238 206-381 (394)
128 TIGR00897 2A0118 polyol permea 99.5 7.7E-13 1.7E-17 120.8 16.9 173 41-236 222-400 (402)
129 PRK12382 putative transporter; 99.5 6.7E-13 1.4E-17 120.9 16.0 155 56-234 231-386 (392)
130 PRK03893 putative sialic acid 99.5 6.5E-13 1.4E-17 124.7 16.1 131 59-195 293-427 (496)
131 PRK09556 uhpT sugar phosphate 99.5 5E-13 1.1E-17 124.5 15.2 149 41-195 258-411 (467)
132 PRK03633 putative MFS family t 99.5 8.2E-13 1.8E-17 119.8 15.9 153 57-234 216-369 (381)
133 PRK03545 putative arabinose tr 99.5 9.8E-13 2.1E-17 119.7 16.4 148 62-233 226-376 (390)
134 TIGR00879 SP MFS transporter, 99.5 1.4E-12 3.1E-17 121.4 17.7 174 45-240 288-474 (481)
135 COG3104 PTR2 Dipeptide/tripept 99.5 2.9E-12 6.4E-17 114.5 18.3 176 41-238 21-207 (498)
136 PRK09874 drug efflux system pr 99.5 1.1E-12 2.5E-17 119.9 15.9 159 58-234 236-395 (408)
137 COG2271 UhpC Sugar phosphate p 99.5 1.4E-12 3.1E-17 113.9 14.2 159 39-210 250-416 (448)
138 TIGR00887 2A0109 phosphate:H+ 99.5 2.1E-12 4.6E-17 121.4 16.4 187 51-243 298-495 (502)
139 PRK09952 shikimate transporter 99.5 3.5E-12 7.5E-17 117.8 17.4 170 50-239 259-435 (438)
140 KOG4686 Predicted sugar transp 99.5 1.7E-14 3.8E-19 118.9 1.6 258 45-337 48-314 (459)
141 TIGR00883 2A0106 metabolite-pr 99.4 7.2E-13 1.6E-17 120.3 11.5 147 43-195 221-374 (394)
142 PRK09848 glucuronide transport 99.4 3.4E-12 7.4E-17 118.3 16.1 251 40-337 7-278 (448)
143 PF05631 DUF791: Protein of un 99.4 2.6E-11 5.7E-16 104.8 19.1 243 52-340 45-295 (354)
144 PRK11128 putative 3-phenylprop 99.4 6E-12 1.3E-16 114.2 15.9 147 42-195 206-354 (382)
145 PRK11273 glpT sn-glycerol-3-ph 99.4 2.7E-12 5.8E-17 119.1 13.8 171 41-233 253-431 (452)
146 TIGR01272 gluP glucose/galacto 99.4 3.3E-12 7.2E-17 112.1 13.5 195 131-349 6-209 (310)
147 PRK11663 regulatory protein Uh 99.4 6.9E-12 1.5E-16 115.7 16.0 168 43-233 245-420 (434)
148 TIGR00895 2A0115 benzoate tran 99.4 2.2E-12 4.8E-17 117.3 12.4 143 45-193 254-397 (398)
149 PF11700 ATG22: Vacuole efflux 99.4 1.2E-11 2.6E-16 114.1 16.7 180 41-241 281-472 (477)
150 KOG0253 Synaptic vesicle trans 99.4 1.2E-12 2.6E-17 112.0 9.0 129 91-240 390-523 (528)
151 PRK10504 putative transporter; 99.4 1E-11 2.2E-16 116.0 15.0 148 42-195 262-414 (471)
152 KOG2816 Predicted transporter 99.4 2.1E-11 4.5E-16 111.4 16.5 267 45-343 26-297 (463)
153 PRK12307 putative sialic acid 99.4 1.7E-11 3.7E-16 112.9 15.9 130 60-195 250-382 (426)
154 COG2814 AraJ Arabinose efflux 99.4 2.4E-11 5.2E-16 107.3 15.8 172 40-235 210-384 (394)
155 PRK10077 xylE D-xylose transpo 99.4 1.9E-11 4.2E-16 114.3 16.3 133 56-194 286-424 (479)
156 TIGR00900 2A0121 H+ Antiporter 99.4 3.8E-12 8.3E-17 114.3 11.0 128 62-195 232-362 (365)
157 TIGR00898 2A0119 cation transp 99.4 1.3E-11 2.8E-16 116.3 14.6 137 89-243 362-501 (505)
158 PRK15075 citrate-proton sympor 99.4 2.4E-11 5.2E-16 112.1 15.8 137 53-195 250-393 (434)
159 KOG0569 Permease of the major 99.4 3E-11 6.6E-16 109.9 15.7 170 53-244 282-462 (485)
160 TIGR00891 2A0112 putative sial 99.3 1.7E-11 3.6E-16 111.9 14.1 131 59-195 256-389 (405)
161 PF05977 MFS_3: Transmembrane 99.3 6.3E-11 1.4E-15 110.5 17.7 136 54-195 231-368 (524)
162 PRK11462 putative transporter; 99.3 6.1E-11 1.3E-15 110.0 17.4 248 48-338 16-278 (460)
163 PLN00028 nitrate transmembrane 99.3 2.2E-11 4.9E-16 113.5 13.9 155 60-238 271-434 (476)
164 PRK10406 alpha-ketoglutarate t 99.3 7.4E-11 1.6E-15 108.8 16.8 135 54-194 256-397 (432)
165 COG2211 MelB Na+/melibiose sym 99.3 4.8E-11 1E-15 107.6 14.6 276 37-349 8-303 (467)
166 TIGR00882 2A0105 oligosacchari 99.3 3.1E-11 6.7E-16 110.1 13.1 131 84-230 256-388 (396)
167 PRK11010 ampG muropeptide tran 99.3 1.6E-10 3.4E-15 108.2 18.0 153 65-239 247-405 (491)
168 TIGR00792 gph sugar (Glycoside 99.3 8.9E-12 1.9E-16 115.1 9.6 112 84-195 259-379 (437)
169 TIGR02718 sider_RhtX_FptX side 99.3 3.5E-11 7.6E-16 109.5 13.1 158 51-230 218-384 (390)
170 TIGR00712 glpT glycerol-3-phos 99.3 7.4E-11 1.6E-15 109.0 14.5 176 43-240 253-437 (438)
171 PRK15402 multidrug efflux syst 99.3 9.1E-11 2E-15 107.4 14.9 127 62-195 236-369 (406)
172 TIGR00896 CynX cyanate transpo 99.3 1.1E-10 2.3E-15 104.9 15.0 150 42-198 198-350 (355)
173 KOG2504 Monocarboxylate transp 99.3 4.7E-11 1E-15 110.9 12.8 176 41-237 298-476 (509)
174 TIGR00881 2A0104 phosphoglycer 99.3 3.5E-11 7.6E-16 108.6 11.5 147 43-195 218-371 (379)
175 PRK10213 nepI ribonucleoside t 99.3 2.9E-10 6.2E-15 103.6 16.8 125 64-195 240-365 (394)
176 COG2270 Permeases of the major 99.3 1.2E-10 2.7E-15 102.1 13.2 163 56-239 267-431 (438)
177 PF03209 PUCC: PUCC protein; 99.2 4.5E-10 9.8E-15 98.7 16.5 233 67-340 6-261 (403)
178 TIGR02332 HpaX 4-hydroxyphenyl 99.2 1.5E-10 3.2E-15 106.1 13.4 147 43-195 244-394 (412)
179 PF06813 Nodulin-like: Nodulin 99.2 1E-09 2.2E-14 91.8 16.8 134 54-195 15-156 (250)
180 PRK10054 putative transporter; 99.2 1.2E-10 2.7E-15 106.0 12.1 111 84-195 246-358 (395)
181 TIGR01272 gluP glucose/galacto 99.2 5E-10 1.1E-14 98.3 15.5 146 41-195 140-289 (310)
182 TIGR00894 2A0114euk Na(+)-depe 99.2 2.9E-10 6.3E-15 106.0 14.8 177 41-237 261-450 (465)
183 PF03825 Nuc_H_symport: Nucleo 99.2 3.5E-10 7.5E-15 102.4 14.2 148 42-195 208-363 (400)
184 PF11700 ATG22: Vacuole efflux 99.2 6.4E-09 1.4E-13 96.2 22.4 235 84-343 72-337 (477)
185 PRK10091 MFS transport protein 99.2 4.7E-10 1E-14 101.8 14.1 123 65-195 224-349 (382)
186 COG2223 NarK Nitrate/nitrite t 99.2 2.5E-10 5.5E-15 100.1 11.1 151 40-197 217-376 (417)
187 PRK11646 multidrug resistance 99.2 3.8E-10 8.3E-15 103.0 12.4 130 61-196 228-359 (400)
188 TIGR00903 2A0129 major facilit 99.1 1.7E-09 3.6E-14 97.4 15.9 144 41-194 192-340 (368)
189 TIGR00711 efflux_EmrB drug res 99.1 3.8E-10 8.1E-15 105.7 11.9 143 47-195 261-409 (485)
190 TIGR00901 2A0125 AmpG-related 99.1 5.5E-10 1.2E-14 100.3 12.4 132 43-180 211-355 (356)
191 KOG4686 Predicted sugar transp 99.1 2.7E-09 5.8E-14 88.7 15.1 151 39-199 265-417 (459)
192 PRK15034 nitrate/nitrite trans 99.1 9.4E-10 2E-14 100.5 12.7 150 41-197 252-429 (462)
193 PRK11902 ampG muropeptide tran 99.1 2.4E-09 5.2E-14 97.9 15.5 148 65-238 234-391 (402)
194 PF13347 MFS_2: MFS/sugar tran 99.1 2.9E-09 6.4E-14 98.1 15.6 149 41-195 225-383 (428)
195 PF07690 MFS_1: Major Facilita 99.1 4.2E-10 9.2E-15 100.6 9.8 135 47-187 212-352 (352)
196 TIGR00710 efflux_Bcr_CflA drug 99.1 1.8E-09 3.8E-14 97.9 13.8 123 61-190 226-356 (385)
197 PRK14995 methyl viologen resis 99.1 1.4E-09 3E-14 102.1 12.7 142 48-195 266-412 (495)
198 PRK08633 2-acyl-glycerophospho 99.1 2E-09 4.3E-14 111.4 15.0 130 59-194 250-382 (1146)
199 PRK09848 glucuronide transport 99.1 9.4E-10 2E-14 102.0 10.7 148 42-195 229-387 (448)
200 PRK06814 acylglycerophosphoeth 99.1 1.7E-09 3.7E-14 111.7 13.6 147 43-195 227-395 (1140)
201 PF01306 LacY_symp: LacY proto 99.1 3.7E-09 8.1E-14 94.5 13.6 142 84-241 261-405 (412)
202 PRK10473 multidrug efflux syst 99.0 4.7E-09 1E-13 95.6 14.0 119 67-195 230-348 (392)
203 PRK11043 putative transporter; 99.0 1.4E-08 3.1E-13 92.7 16.5 129 60-195 222-356 (401)
204 PRK10133 L-fucose transporter; 99.0 6E-09 1.3E-13 96.2 13.3 126 61-195 278-406 (438)
205 PRK10429 melibiose:sodium symp 99.0 3.5E-09 7.7E-14 98.8 11.9 149 41-195 231-392 (473)
206 KOG2532 Permease of the major 99.0 9.4E-09 2E-13 94.5 14.1 174 43-236 260-446 (466)
207 KOG0252 Inorganic phosphate tr 99.0 9.7E-10 2.1E-14 97.2 6.6 196 41-247 304-508 (538)
208 PRK11195 lysophospholipid tran 99.0 2.7E-08 5.8E-13 90.7 16.0 122 66-194 231-354 (393)
209 PRK09669 putative symporter Ya 98.9 8.1E-09 1.7E-13 95.7 11.5 112 84-195 266-387 (444)
210 PRK11102 bicyclomycin/multidru 98.9 3.7E-08 7.9E-13 89.2 14.7 124 61-191 214-344 (377)
211 TIGR00788 fbt folate/biopterin 98.9 9.4E-09 2E-13 95.6 10.8 121 69-195 281-412 (468)
212 PF03092 BT1: BT1 family; Int 98.9 2.2E-08 4.7E-13 92.0 11.4 127 62-195 11-149 (433)
213 COG2807 CynX Cyanate permease 98.9 1.7E-07 3.7E-12 81.0 15.7 153 41-200 208-363 (395)
214 PF00083 Sugar_tr: Sugar (and 98.8 2.6E-11 5.7E-16 112.5 -8.9 163 58-244 270-444 (451)
215 TIGR00926 2A1704 Peptide:H+ sy 98.8 5.6E-07 1.2E-11 86.3 19.7 158 62-234 9-179 (654)
216 COG0477 ProP Permeases of the 98.8 2.1E-07 4.6E-12 80.9 15.4 139 51-195 12-157 (338)
217 COG2270 Permeases of the major 98.8 1.6E-07 3.4E-12 82.9 13.8 242 82-343 58-308 (438)
218 PRK11652 emrD multidrug resist 98.8 3.2E-07 6.8E-12 83.7 16.6 122 67-195 234-359 (394)
219 TIGR00885 fucP L-fucose:H+ sym 98.8 1.2E-07 2.6E-12 86.8 13.7 144 43-195 234-380 (410)
220 TIGR00886 2A0108 nitrite extru 98.8 2.2E-08 4.8E-13 90.1 8.5 128 48-182 232-365 (366)
221 PRK11462 putative transporter; 98.7 3.7E-07 8.1E-12 84.8 15.5 112 84-195 265-386 (460)
222 PF01770 Folate_carrier: Reduc 98.7 2.2E-06 4.8E-11 76.6 19.5 161 62-241 24-186 (412)
223 KOG0637 Sucrose transporter an 98.7 1E-07 2.2E-12 84.7 10.6 145 41-191 32-200 (498)
224 KOG3764 Vesicular amine transp 98.7 6.2E-08 1.3E-12 84.5 9.0 158 50-229 279-446 (464)
225 KOG0254 Predicted transporter 98.7 5.5E-07 1.2E-11 85.0 16.0 183 41-245 295-492 (513)
226 KOG3762 Predicted transporter 98.7 4.7E-08 1E-12 88.3 7.3 141 49-195 379-521 (618)
227 TIGR00924 yjdL_sub1_fam amino 98.7 6.8E-07 1.5E-11 83.5 14.7 112 84-195 314-442 (475)
228 COG0738 FucP Fucose permease [ 98.6 4.9E-07 1.1E-11 79.3 11.6 147 40-195 235-383 (422)
229 COG2211 MelB Na+/melibiose sym 98.6 9.6E-07 2.1E-11 80.2 13.4 149 41-195 236-395 (467)
230 PF03209 PUCC: PUCC protein; 98.6 1.7E-06 3.6E-11 76.6 14.3 167 55-233 222-394 (403)
231 PF05978 UNC-93: Ion channel r 98.5 3.8E-06 8.3E-11 65.1 12.7 107 88-195 43-150 (156)
232 PRK09584 tppB putative tripept 98.5 3.6E-06 7.9E-11 79.1 15.0 108 84-191 318-439 (500)
233 PF06779 DUF1228: Protein of u 98.5 4.9E-07 1.1E-11 61.6 6.4 79 54-138 5-83 (85)
234 TIGR00769 AAA ADP/ATP carrier 98.4 1.2E-05 2.6E-10 74.0 16.4 145 41-195 7-190 (472)
235 PRK15403 multidrug efflux syst 98.4 7.3E-06 1.6E-10 75.2 14.8 148 41-195 218-372 (413)
236 PF12832 MFS_1_like: MFS_1 lik 98.4 1E-06 2.3E-11 59.5 6.6 69 47-121 6-74 (77)
237 KOG3574 Acetyl-CoA transporter 98.4 6E-06 1.3E-10 71.8 12.2 269 38-346 28-324 (510)
238 PTZ00207 hypothetical protein; 98.4 4.3E-06 9.2E-11 79.0 12.3 183 40-233 352-548 (591)
239 PRK10207 dipeptide/tripeptide 98.4 8.1E-06 1.8E-10 76.4 13.3 111 84-194 311-439 (489)
240 KOG2533 Permease of the major 98.3 6.4E-07 1.4E-11 82.9 5.4 142 41-189 273-423 (495)
241 TIGR01301 GPH_sucrose GPH fami 98.3 5.5E-05 1.2E-09 70.0 16.7 183 43-240 260-475 (477)
242 KOG0255 Synaptic vesicle trans 98.3 4.8E-05 1E-09 72.1 16.3 144 85-245 353-501 (521)
243 KOG3098 Uncharacterized conser 98.2 8.6E-05 1.9E-09 67.7 15.0 107 88-195 56-163 (461)
244 PF06609 TRI12: Fungal trichot 98.1 2.4E-05 5.2E-10 73.7 10.2 194 41-241 310-558 (599)
245 PF06963 FPN1: Ferroportin1 (F 98.1 0.00086 1.9E-08 61.2 19.8 271 44-343 5-313 (432)
246 KOG2816 Predicted transporter 98.0 6.4E-05 1.4E-09 69.3 11.6 124 66-195 267-391 (463)
247 PF02487 CLN3: CLN3 protein; 97.9 0.0012 2.5E-08 59.4 17.5 134 85-238 62-197 (402)
248 KOG2615 Permease of the major 97.8 0.00036 7.8E-09 61.2 11.1 121 69-195 290-413 (451)
249 PF13000 Acatn: Acetyl-coenzym 97.7 0.00096 2.1E-08 60.7 12.5 284 44-346 3-337 (544)
250 KOG4332 Predicted sugar transp 97.6 7.3E-05 1.6E-09 62.3 4.7 101 56-163 52-154 (454)
251 KOG2563 Permease of the major 97.5 8.9E-05 1.9E-09 66.3 3.9 147 43-195 268-420 (480)
252 PF00854 PTR2: POT family; In 97.5 0.00062 1.3E-08 61.6 9.2 109 113-237 2-123 (372)
253 PRK15462 dipeptide/tripeptide 97.5 0.0041 8.9E-08 58.0 14.5 111 84-194 310-438 (493)
254 PF03219 TLC: TLC ATP/ADP tran 97.5 0.0061 1.3E-07 56.7 15.5 149 40-195 23-205 (491)
255 KOG1330 Sugar transporter/spin 97.4 0.001 2.2E-08 60.0 9.4 114 84-197 285-413 (493)
256 KOG1237 H+/oligopeptide sympor 97.3 0.014 3.1E-07 55.5 16.0 158 40-210 36-227 (571)
257 PF03092 BT1: BT1 family; Int 97.2 0.00073 1.6E-08 62.3 6.6 149 84-241 257-417 (433)
258 PF02487 CLN3: CLN3 protein; 97.0 0.018 3.9E-07 51.9 13.0 108 84-193 283-394 (402)
259 KOG3098 Uncharacterized conser 96.9 0.024 5.1E-07 52.1 12.6 107 84-191 281-409 (461)
260 COG3202 ATP/ADP translocase [E 96.7 0.063 1.4E-06 49.2 13.9 149 40-195 26-209 (509)
261 KOG3762 Predicted transporter 96.7 0.002 4.3E-08 59.2 4.2 83 43-131 13-96 (618)
262 PRK03612 spermidine synthase; 96.6 0.11 2.4E-06 49.2 15.7 120 68-195 42-170 (521)
263 KOG3810 Micronutrient transpor 96.5 0.011 2.3E-07 51.6 7.3 134 94-241 54-187 (433)
264 PF06963 FPN1: Ferroportin1 (F 96.4 0.051 1.1E-06 49.8 11.5 127 61-193 278-415 (432)
265 PF03137 OATP: Organic Anion T 96.3 0.00098 2.1E-08 63.0 0.0 149 41-195 305-513 (539)
266 KOG1479 Nucleoside transporter 96.3 0.19 4.2E-06 45.2 14.1 136 43-183 20-165 (406)
267 COG3104 PTR2 Dipeptide/tripept 96.1 0.14 2.9E-06 47.2 12.4 109 84-192 326-452 (498)
268 KOG2325 Predicted transporter/ 96.0 0.025 5.3E-07 52.2 7.2 41 155-195 409-449 (488)
269 TIGR00939 2a57 Equilibrative N 95.4 0.25 5.4E-06 45.7 11.5 107 84-191 309-429 (437)
270 TIGR00805 oat sodium-independe 95.3 0.043 9.3E-07 53.4 6.5 80 42-127 331-414 (633)
271 KOG3097 Predicted membrane pro 94.3 0.47 1E-05 41.3 9.4 71 92-163 68-139 (390)
272 PF12832 MFS_1_like: MFS_1 lik 94.3 0.13 2.7E-06 34.7 5.0 52 285-342 3-54 (77)
273 TIGR00939 2a57 Equilibrative N 94.2 2.2 4.8E-05 39.5 14.5 50 134-188 105-155 (437)
274 PF01770 Folate_carrier: Reduc 94.2 1.6 3.5E-05 39.7 13.1 98 81-178 284-384 (412)
275 PF01733 Nucleoside_tran: Nucl 93.1 0.03 6.6E-07 49.2 0.4 105 86-190 186-304 (309)
276 KOG1479 Nucleoside transporter 91.7 3.2 6.9E-05 37.6 11.2 107 83-190 283-399 (406)
277 KOG3880 Predicted small molecu 91.5 1.9 4.1E-05 37.4 9.1 175 44-236 15-198 (409)
278 TIGR00806 rfc RFC reduced fola 90.8 8 0.00017 36.2 13.0 95 84-178 300-397 (511)
279 KOG0637 Sucrose transporter an 88.6 2.6 5.6E-05 38.7 8.0 110 86-195 336-469 (498)
280 PF07672 MFS_Mycoplasma: Mycop 85.7 0.85 1.8E-05 38.5 3.2 106 166-295 2-107 (267)
281 PF13000 Acatn: Acetyl-coenzym 85.6 4 8.8E-05 38.0 7.6 53 143-195 413-466 (544)
282 KOG3626 Organic anion transpor 84.9 0.89 1.9E-05 44.4 3.3 77 43-125 394-474 (735)
283 PF07672 MFS_Mycoplasma: Mycop 81.9 7 0.00015 33.1 7.0 99 84-185 143-254 (267)
284 TIGR00769 AAA ADP/ATP carrier 81.2 49 0.0011 31.1 13.1 80 43-124 266-345 (472)
285 KOG4332 Predicted sugar transp 80.7 22 0.00048 30.6 9.5 96 84-179 284-389 (454)
286 TIGR00880 2_A_01_02 Multidrug 80.7 15 0.00033 26.8 8.3 42 84-125 89-130 (141)
287 COG5336 Uncharacterized protei 78.5 11 0.00025 26.8 6.0 35 85-119 45-80 (116)
288 KOG3880 Predicted small molecu 74.3 16 0.00035 32.0 7.1 74 120-193 327-401 (409)
289 KOG4830 Predicted sugar transp 68.2 4.3 9.3E-05 34.4 2.4 59 51-115 27-94 (412)
290 COG2233 UraA Xanthine/uracil p 65.2 1.2E+02 0.0026 28.3 11.0 128 38-173 13-144 (451)
291 PF03547 Mem_trans: Membrane t 64.2 59 0.0013 29.4 9.3 18 276-293 239-256 (385)
292 KOG3810 Micronutrient transpor 64.1 51 0.0011 29.6 8.1 109 84-195 273-384 (433)
293 PF06912 DUF1275: Protein of u 63.6 81 0.0017 25.7 11.8 17 89-105 53-69 (209)
294 PF06779 DUF1228: Protein of u 63.1 15 0.00031 25.3 3.8 43 295-343 5-47 (85)
295 PF11947 DUF3464: Protein of u 60.7 40 0.00086 26.1 6.2 38 148-185 108-145 (153)
296 PF07857 DUF1632: CEO family ( 57.7 1.2E+02 0.0026 25.8 10.4 22 219-240 118-139 (254)
297 KOG3574 Acetyl-CoA transporter 56.5 22 0.00047 32.3 4.7 44 152-195 387-430 (510)
298 COG1268 BioY Uncharacterized c 52.1 60 0.0013 26.0 6.2 23 89-111 89-111 (184)
299 COG3559 TnrB3 Putative exporte 51.0 2.1E+02 0.0045 26.5 14.4 32 199-230 222-256 (536)
300 PF07760 DUF1616: Protein of u 48.4 1.8E+02 0.004 25.2 11.0 56 138-193 22-77 (287)
301 COG4769 Predicted membrane pro 46.1 29 0.00062 27.0 3.3 52 90-147 81-132 (181)
302 PF10810 DUF2545: Protein of u 45.3 78 0.0017 20.6 4.6 43 298-348 38-80 (80)
303 PF02694 UPF0060: Uncharacteri 44.1 64 0.0014 23.1 4.6 48 84-131 56-103 (107)
304 KOG2601 Iron transporter [Inor 42.4 1.1E+02 0.0024 27.9 6.8 28 93-120 74-101 (503)
305 TIGR00801 ncs2 uracil-xanthine 41.7 1.7E+02 0.0037 27.0 8.4 58 42-108 6-63 (415)
306 PRK02237 hypothetical protein; 39.8 96 0.0021 22.3 4.9 46 84-129 58-103 (109)
307 KOG1237 H+/oligopeptide sympor 39.5 1.1E+02 0.0023 29.7 6.9 63 134-196 457-520 (571)
308 COG1230 CzcD Co/Zn/Cd efflux s 39.4 2.6E+02 0.0057 24.4 9.1 61 55-127 39-102 (296)
309 PF02632 BioY: BioY family; I 39.0 1.4E+02 0.003 23.0 6.2 24 90-113 61-84 (148)
310 PF05631 DUF791: Protein of un 38.0 3E+02 0.0066 24.8 13.2 102 94-195 175-303 (354)
311 PF03605 DcuA_DcuB: Anaerobic 37.2 93 0.002 27.9 5.6 32 156-187 109-142 (364)
312 PF10785 NADH-u_ox-rdase: NADH 34.5 1.5E+02 0.0033 20.3 5.3 39 96-134 32-77 (86)
313 PF00854 PTR2: POT family; In 33.6 1.8E+02 0.004 26.1 7.3 79 52-131 42-121 (372)
314 PF09605 Trep_Strep: Hypotheti 31.3 2.8E+02 0.006 22.3 7.3 41 90-130 36-76 (186)
315 PF06123 CreD: Inner membrane 30.5 4.5E+02 0.0097 24.5 9.0 21 111-131 377-397 (430)
316 TIGR02230 ATPase_gene1 F0F1-AT 29.5 2.1E+02 0.0046 20.4 6.0 26 97-122 57-83 (100)
317 PRK11469 hypothetical protein; 29.2 3.1E+02 0.0066 22.1 7.7 31 97-127 150-180 (188)
318 PLN02878 homogentisate phytylt 27.6 3.1E+02 0.0067 23.8 7.0 74 108-181 195-268 (280)
319 PF06341 DUF1056: Protein of u 27.4 1.4E+02 0.0029 19.2 3.6 22 147-168 40-61 (63)
320 PRK11715 inner membrane protei 27.3 5.2E+02 0.011 24.1 9.0 30 110-139 382-413 (436)
321 TIGR03644 marine_trans_1 proba 26.7 5.1E+02 0.011 23.9 9.3 30 161-190 315-344 (404)
322 COG3086 RseC Positive regulato 26.4 3E+02 0.0065 21.1 6.1 31 88-118 78-108 (150)
323 PF11298 DUF3099: Protein of u 26.3 1.4E+02 0.003 19.8 3.7 31 105-135 10-40 (73)
324 PF11151 DUF2929: Protein of u 26.1 1.7E+02 0.0038 18.2 5.6 27 212-238 28-54 (57)
325 COG2119 Predicted membrane pro 25.4 3.6E+02 0.0078 21.7 8.7 37 90-126 142-178 (190)
326 PF07399 DUF1504: Protein of u 25.0 4.6E+02 0.01 24.2 7.8 49 166-218 178-228 (438)
327 PF00939 Na_sulph_symp: Sodium 24.9 5.2E+02 0.011 24.3 8.8 11 103-113 109-119 (471)
328 TIGR00366 conserved hypothetic 24.4 2.1E+02 0.0046 26.5 5.8 12 98-109 73-84 (438)
329 TIGR00926 2A1704 Peptide:H+ sy 24.4 3.1E+02 0.0067 27.2 7.4 59 135-193 565-624 (654)
330 KOG2082 K+/Cl- cotransporter K 24.2 5.2E+02 0.011 26.2 8.4 22 112-133 496-517 (1075)
331 PF03219 TLC: TLC ATP/ADP tran 23.9 6.4E+02 0.014 24.0 15.6 40 156-195 304-344 (491)
332 PF07456 Hpre_diP_synt_I: Hept 23.5 3.4E+02 0.0073 21.0 5.9 51 89-145 68-118 (148)
333 PF02667 SCFA_trans: Short cha 22.9 2.4E+02 0.0051 26.4 5.8 14 97-110 75-88 (453)
334 PF06781 UPF0233: Uncharacteri 22.8 2.7E+02 0.0058 19.3 6.8 8 236-243 1-8 (87)
335 PF00860 Xan_ur_permease: Perm 22.7 1.4E+02 0.003 27.2 4.5 87 84-173 35-129 (389)
336 PF13940 Ldr_toxin: Toxin Ldr, 22.5 1.3E+02 0.0029 16.4 2.5 20 89-108 15-34 (35)
337 PF06813 Nodulin-like: Nodulin 21.8 3.6E+02 0.0077 22.9 6.4 21 174-195 41-61 (250)
338 TIGR02185 Trep_Strep conserved 21.1 4.4E+02 0.0096 21.2 7.2 40 90-129 38-77 (189)
339 PF04281 Tom22: Mitochondrial 20.6 3.6E+02 0.0077 20.5 5.4 29 158-186 59-87 (137)
340 COG5336 Uncharacterized protei 20.5 1.6E+02 0.0034 21.3 3.3 34 122-155 60-93 (116)
341 PF01733 Nucleoside_tran: Nucl 20.1 35 0.00075 30.0 0.0 41 143-188 5-46 (309)
No 1
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4.2e-28 Score=212.30 Aligned_cols=261 Identities=20% Similarity=0.212 Sum_probs=224.4
Q ss_pred CchHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (351)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 117 (351)
..+..++.+.++.|..+.........+|++.+|+|.|..+ .|+..++|.++.+++.++...+.||+.||++++.
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~------aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~ 83 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGA------AGQLITAYALGVALGAPLLALLTGRLERRRLLLG 83 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence 4456777888899999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727 118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 196 (351)
.+.++.++++++++++|++.++++|++.|+..|.+.+. .++..++.|+++|++++++...+..++.++|.+++.++.+
T Consensus 84 ~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~- 162 (394)
T COG2814 84 LLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ- 162 (394)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH-
Confidence 99999999999999999999999999999998888875 9999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcc
Q 018727 197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK 275 (351)
Q Consensus 197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (351)
.+|||..|.+...++++.+ ..+..+| |+...++.+ .+..+.
T Consensus 163 ---------------~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~---------------------~~~~~~ 204 (394)
T COG2814 163 ---------------LFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLP---------------------GPLRTL 204 (394)
T ss_pred ---------------HhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCC---------------------cchhHH
Confidence 4555555577777766654 4466677 111111110 111234
Q ss_pred cccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-ccccc
Q 018727 276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-KIDYR 348 (351)
Q Consensus 276 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-~~~~r 348 (351)
.+.+|+|.++...+..++.+..++..+++...++++. .|++...+++++..++++.+++...+ |+.||
T Consensus 205 ~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v-----~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr 273 (394)
T COG2814 205 LRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESV-----AGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR 273 (394)
T ss_pred HHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHc-----cCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 5678999999999999999999999999999899887 89999999999999999999987665 66665
No 2
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.96 E-value=4.8e-27 Score=214.65 Aligned_cols=284 Identities=13% Similarity=0.050 Sum_probs=208.9
Q ss_pred chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
.++.++.+++.++++.++....+...|.+.+++|++..+ .+++.+++.+++.+++++.|+++||+|||+++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~ 79 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATM------FGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGI 79 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHH
Confidence 455666778888888999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727 119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 197 (351)
.++..++.++++++++++.+++.|++.|++.+...+. ..++.|++|+++|++++++++.+..+|.++++.+++++.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (412)
T TIGR02332 80 MVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD 159 (412)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999998887775 788999999999999999999999999999999999886411
Q ss_pred CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCc-cchhhHHHhhhhhhh---hhhhhhcc-
Q 018727 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDD-SCDVSYDALESASAE---VKEEEGRE- 271 (351)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~- 271 (351)
+ ... ..+||..+.+.++..++. .+..+++||+|++...-.+ +++...+..+....+ .++...+.
T Consensus 160 ~-~~~---------~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (412)
T TIGR02332 160 G-LMA---------LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAA 229 (412)
T ss_pred C-CCC---------ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhcccccccccccccccc
Confidence 0 000 234555556665555443 4456677888754321111 111111111111000 00000000
Q ss_pred ---cCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 272 ---ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 272 ---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
...+++++ ++.++...+.+++.......+.+++|.|+++. +.+++..+++.+.....++.+++.+..
T Consensus 230 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~~~~s~~~~~~~~~~~~l~~~~g~l~~ 299 (412)
T TIGR02332 230 MPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSF----NQGSSNIMIGLLAAIPQFCTIFGMIWW 299 (412)
T ss_pred ccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCcHHHhHHHhhHHHHHHHHHHHHH
Confidence 11223333 57788878888888888888899999998762 146778888888888887777765543
No 3
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.95 E-value=6.5e-28 Score=208.58 Aligned_cols=279 Identities=18% Similarity=0.154 Sum_probs=224.3
Q ss_pred chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
+++.++.+++.+...++.+...+...|.+.++.++|..| .|++.+++.+.+.++..+.|.++||.+.|+.+.++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~------lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQ------LGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 344556778888888888889999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh--hhhcC
Q 018727 119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFLAQ 195 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~ 195 (351)
++++++..++++++++.+.+.++.+++|+.+|.-.| +...++.|+++++||+..++++.+.++|+.+.|++. +.+..
T Consensus 101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 999999999999999999999999999999988665 699999999999999999999999999999999999 78876
Q ss_pred CCCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhh-hhcccC
Q 018727 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE-EGREAT 273 (351)
Q Consensus 196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 273 (351)
+.+|+..+++.++++++. +++++.++++|+...-.+-++ ...+..+...++.+.+ ....+.
T Consensus 181 ----------------~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~-~~~d~~e~~~~~~~~~~ls~~~i 243 (448)
T COG2271 181 ----------------HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEE-YRGDPLEIYEEEKENEGLTAWQI 243 (448)
T ss_pred ----------------ccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHH-hhcCchhhhhhhccCCCccHHHH
Confidence 344555556666666554 455666777776543222111 1111111110000000 111222
Q ss_pred cccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccccc
Q 018727 274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPFKI 345 (351)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~ 345 (351)
-.+.+++||.+|.+++.+++.+..-.+...+.|.|+.+. .|+|...++...+.+=.+++.+.++.++
T Consensus 244 ~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~-----k~~s~~~a~~a~~lfE~agl~G~Ll~Gw 310 (448)
T COG2271 244 FVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV-----KGFSLVKANWAISLFEVAGLPGTLLAGW 310 (448)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-----cCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345678999999999999999999999999999999998 8999999999999999888888777654
No 4
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.95 E-value=2.2e-26 Score=215.16 Aligned_cols=283 Identities=14% Similarity=0.104 Sum_probs=211.2
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
+..+..+++..++..++.+.+++.+|.+.+++|.+..+ .+|+.+.+.++..++.+++|+++||+|||+++.++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~------~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~ 78 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNE------LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGG 78 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34456788889999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhc-cccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 197 (351)
++..++.++++++++++.++++|+++|++.+...+. ...+.+.+ |+++|++++++......+|..+||.+++.+.+
T Consensus 79 ~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~-- 156 (495)
T PRK14995 79 TLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE-- 156 (495)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 999999999999999999999999999998877664 66676665 67999999999999999999999999999998
Q ss_pred CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhH---------HHhhhhhh-----
Q 018727 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSY---------DALESASA----- 262 (351)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~~----- 262 (351)
++||| +.+++...+.++. ++..+.+|++++++.++.+...... ...+....
T Consensus 157 -----~~gwr---------~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 222 (495)
T PRK14995 157 -----HFYWG---------SVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSL 222 (495)
T ss_pred -----cCChH---------HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCch
Confidence 44554 4445554444443 3445556765433221111111000 00000000
Q ss_pred -----------------hhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhh
Q 018727 263 -----------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV 325 (351)
Q Consensus 263 -----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 325 (351)
...+.+.+.+....+++|+|.++...+..++......+...++|.|++.. +|+++.++
T Consensus 223 ~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v-----~g~s~~~a 297 (495)
T PRK14995 223 WVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFV-----HGLSPLEA 297 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHH
Confidence 00111122223345778999888877777777777777888889888876 79999999
Q ss_pred HHHHHHHhhhHHhhhcc-----ccccccc
Q 018727 326 GEVLAITGTKVDTHILP-----FKIDYRF 349 (351)
Q Consensus 326 g~~~~~~~~~~~~~~~~-----~~~~~r~ 349 (351)
|..+....++..++... .|+++|+
T Consensus 298 g~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 326 (495)
T PRK14995 298 GMFMLPVMVASGFSGPIAGILVSRLGLRL 326 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 99998887776554433 3565554
No 5
>PRK03545 putative arabinose transporter; Provisional
Probab=99.95 E-value=4e-26 Score=207.45 Aligned_cols=256 Identities=16% Similarity=0.159 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
..++.+.+..+......+...+.+|.+.+++|.+..+ .+++.+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 82 (390)
T PRK03545 9 LRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQ------VGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFV 82 (390)
T ss_pred HHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 3444445544444444445667789999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 199 (351)
+.+++.++++++++++.+++.|+++|++.+...+. .+++.|++|+++|++++++...+.++|..++|.+++.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~---- 158 (390)
T PRK03545 83 LFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ---- 158 (390)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH----
Confidence 99999999999999999999999999988777664 8899999999999999999999999999999999999887
Q ss_pred CCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccc
Q 018727 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL 278 (351)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (351)
..+|+.++.+.++..++.. +....+||+++++ + + . .+..++.
T Consensus 159 ------------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~---~---~-~------------------~~~~~~~ 201 (390)
T PRK03545 159 ------------YLGWRTTFLAIGGGALITLLLLIKLLPLLPSEH---S---G-S------------------LKSLPLL 201 (390)
T ss_pred ------------HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC---c---c-h------------------HHHHHHH
Confidence 4455555566665555443 3334455542210 0 0 0 0123457
Q ss_pred ccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-ccccc
Q 018727 279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-KIDYR 348 (351)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-~~~~r 348 (351)
+|+|.++......++.........++.+.|+.+. .|+++.+++.+.+..+++.+++++.. ++.||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr 267 (390)
T PRK03545 202 FRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQV-----AGLSENFATLLLLLFGGAGIIGSVLFSRLGNR 267 (390)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7888877665555555555555556666676654 68899999999888888877766553 44444
No 6
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.95 E-value=2e-26 Score=212.13 Aligned_cols=276 Identities=16% Similarity=0.157 Sum_probs=203.6
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 122 (351)
++..++..++..+....+.+.+|.+.+++|++..+ .+++.+.+.+++.+++++.|+++||+|||+++.++.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~ 98 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSD------IGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT 98 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence 34555666667777778888899999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCC
Q 018727 123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP 201 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 201 (351)
+++.++++.+++++.+++.|++.|++.|...+ ...++.|++|+++|++++++.+.+..+|..++|.+++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~------ 172 (434)
T PRK11663 99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL------ 172 (434)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 99999999999999999999999998777656 48899999999999999999999999999999999999987
Q ss_pred CcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCc-c-ccc
Q 018727 202 NLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-K-KSL 278 (351)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 278 (351)
.++|+..+.+.++..++. ++..+.+||++++......... +.+..+.. ++.+. +..+... . ...
T Consensus 173 ----------~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~ 239 (434)
T PRK11663 173 ----------HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEW-RHDALELA-QQQEG-AGLSRKEILTKYV 239 (434)
T ss_pred ----------cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccc-cccccccc-hhccc-cCCChhhhHHHHH
Confidence 445555556655544433 3444566776543211110000 00000000 00000 0000011 1 125
Q ss_pred ccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-ccccc
Q 018727 279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-KIDYR 348 (351)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-~~~~r 348 (351)
++++.++...+..++..........++|.|+.+. +|++..+++...+...++.+++++.. .+.||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr 305 (434)
T PRK11663 240 LLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSET-----LGVDLVTANSAVSMFELGGFIGALVAGWGSDK 305 (434)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 6788888887777777777777888899998665 78999999999998888887766554 33443
No 7
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.95 E-value=2.9e-26 Score=205.65 Aligned_cols=237 Identities=15% Similarity=0.048 Sum_probs=179.2
Q ss_pred hccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhh
Q 018727 54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV 133 (351)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 133 (351)
......+.+.+|.+.+|+|++..+ .+++.+.+.+++.+++++.|+++||+|||+++..+......+.......+
T Consensus 4 ~~~~~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 77 (368)
T TIGR00903 4 QAIWVTFSPVLSLVAEDIDVSKEE------LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF 77 (368)
T ss_pred hHHHHHHHhhHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc
Confidence 344556788999999999999999 99999999999999999999999999999887665555444433333337
Q ss_pred hHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCc
Q 018727 134 NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF 213 (351)
Q Consensus 134 ~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~ 213 (351)
+++.+++.|+++|++.+...+....++|++|+++|++++++.+.+..+|.++++.+++.+.+ .+
T Consensus 78 ~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~----------------~~ 141 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT----------------AG 141 (368)
T ss_pred cHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------cc
Confidence 89999999999999988655556667999999999999999999999999999999999987 44
Q ss_pred cchhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHH
Q 018727 214 PYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC 292 (351)
Q Consensus 214 ~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (351)
+||..+.+.+++.++ .++..+++||+++++.+.. +. + + ..+++++++++|.+|...+.++
T Consensus 142 gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~---~~--~-------~-------~~~~~~~ll~~~~~~~~~~~~~ 202 (368)
T TIGR00903 142 GLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGF---GF--K-------D-------AVKEFGALAGRKDLWIIGAILG 202 (368)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCc---ch--H-------H-------HHHHHHHHHcChhHHHHHHHHH
Confidence 455555665555544 4455667888765432110 00 0 0 0013567889999999999999
Q ss_pred HHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh
Q 018727 293 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT 338 (351)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~ 338 (351)
+......++.+++|.|+.+ .|++.. .+....+..+...+
T Consensus 203 ~~~~~~~~~~~wlp~~L~~------~g~s~~-~~~~~~l~~~~g~~ 241 (368)
T TIGR00903 203 FGVALFDNLAIWLEAALRP------AGLEDI-AGDAVALAILAGLI 241 (368)
T ss_pred HHHHHHHHHHHHHHHHHHH------CCCChH-HHHHHHHHHHHHHH
Confidence 9999999999999999965 356654 45555554444444
No 8
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.95 E-value=5.4e-26 Score=209.22 Aligned_cols=271 Identities=14% Similarity=0.078 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcc---cccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQI---AKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 117 (351)
+.+...++..+++.++...+....|.+.++++. +..+ ..+.+.+.+...++..++++++|+++||+|||+++.+
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 22 WAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQ---LLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344456677888899998988888999999853 2222 0113334455556666999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHH--------HHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHH
Q 018727 118 GTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPA 188 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 188 (351)
+.++++++.+++++++++. .+++.|+++|++.|...+ ..++++|++|+++|+++.++.+.+...|.++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877653 688999999999887766 4999999999999999999988888888888887
Q ss_pred hhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhh
Q 018727 189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE 268 (351)
Q Consensus 189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (351)
+...+...... . ....++||.+|.+.++..++.++....+||+++++. + +
T Consensus 179 ~~~~~~~~~~~-------~-~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~--------~--------------~ 228 (432)
T PRK10406 179 VVVVLQQTLED-------A-ELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET--------R--------------A 228 (432)
T ss_pred HHHHHHHhCCH-------H-HHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH--------h--------------h
Confidence 76554321000 0 001456777778777766655555445566432110 0 0
Q ss_pred hcccCcccccccccchHHHHHHHHHH-HhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh-----hhcc
Q 018727 269 GREATPKKSLLKNWPLMSSIIVYCVF-SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT-----HILP 342 (351)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~-----~~~~ 342 (351)
.++..++++++|+++.+...+...+. ......+..++|.|+.+. +|++..+.+...+...+...+ +.+.
T Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~ 303 (432)
T PRK10406 229 LKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-----AGMHANVASGIMTAALFVFMLIQPLIGALS 303 (432)
T ss_pred hcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112456677888777665554433 555666778888888665 688888888777765555443 3334
Q ss_pred ccccccc
Q 018727 343 FKIDYRF 349 (351)
Q Consensus 343 ~~~~~r~ 349 (351)
.|+++|+
T Consensus 304 Dr~grr~ 310 (432)
T PRK10406 304 DKIGRRT 310 (432)
T ss_pred HHcCchH
Confidence 4666664
No 9
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.95 E-value=1.9e-26 Score=209.37 Aligned_cols=271 Identities=16% Similarity=0.150 Sum_probs=203.8
Q ss_pred HHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhh
Q 018727 51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG 130 (351)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 130 (351)
++..++...+....|.+.+++|.+..+ .+++.+++.++..++.++.|+++||+|||+++.++.++.+++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 77 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLGLSAAQ------YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA 77 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhCCChhh------HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence 344556667778888999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCccccccc
Q 018727 131 LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESL 209 (351)
Q Consensus 131 ~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~ 209 (351)
++++++.+++.|++.|++.+...+. ..++.|++|+++|++++++.+....+|..++|.+++.+.+
T Consensus 78 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------------- 143 (399)
T TIGR00893 78 FAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI-------------- 143 (399)
T ss_pred HHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH--------------
Confidence 9999999999999999998877775 8999999999999999999999999999999999998887
Q ss_pred ccCccchhHHHHHHHHHHHHHH-HHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHH
Q 018727 210 FGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSI 288 (351)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 288 (351)
..+|+..+...++..++..+ ..+..||++++....+++.+....+....+.+.++++.......++.+++|.++...
T Consensus 144 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
T TIGR00893 144 --HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLA 221 (399)
T ss_pred --hCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHH
Confidence 44455555666555554433 344456654432221111111000000000011111122333456778899999988
Q ss_pred HHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-----ccccc
Q 018727 289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-----KIDYR 348 (351)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-----~~~~r 348 (351)
+..++.......+..++|.|+.+. +++++.+++.+.+...++.+++.+.. |+++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 281 (399)
T TIGR00893 222 LGQFLVNIGLGFFLTWFPTYLVQE-----RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRR 281 (399)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH-----hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888888888888999999998775 78888999988888777766654443 55555
No 10
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.95 E-value=5.6e-27 Score=217.83 Aligned_cols=274 Identities=14% Similarity=0.075 Sum_probs=194.5
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
.+++.++...++....++..|.+.+++|++..+ .|++.+++.+++.+++++.|+++||+|||+++.++.+++++
T Consensus 33 ~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 106 (467)
T PRK09556 33 VVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTE------LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI 106 (467)
T ss_pred HHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence 555566667778888899999999999999999 99999999999999999999999999999999888877777
Q ss_pred HHHHhhh-----hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727 125 FNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (351)
Q Consensus 125 ~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 198 (351)
+.++.+. +++++.+++.|++.|++.+...+. ..+++|++|+++||+++|+.+.+.++|.++++.+...+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~-- 184 (467)
T PRK09556 107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY-- 184 (467)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh--
Confidence 6655554 589999999999999998876664 88999999999999999999999999999999988766541
Q ss_pred CCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCc-cc
Q 018727 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-KK 276 (351)
Q Consensus 199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 276 (351)
. + ..+|+..+.+.++..++. ++.+++.++++++....++++... +.....+.+.++++...... .+
T Consensus 185 -----~-----~-~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 252 (467)
T PRK09556 185 -----F-----F-DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFG-EPISEEDKETESTDMTKWQIFVE 252 (467)
T ss_pred -----h-----c-cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccc-CccchhhhccccccCcHHHHHHH
Confidence 1 0 112344445544444433 333444555543321111100000 00000000000000000001 12
Q ss_pred ccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
..+|+|.+|...+..++.+....+...+.|.|+.+. +|++..+++...+...++.+++.+..
T Consensus 253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~-----~g~s~~~a~~~~~~~~~~~~ig~~~~ 314 (467)
T PRK09556 253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQE-----LGFSKEDAINTFTLFEIGALVGSLLW 314 (467)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999988888888888888888999998776 79999999988887777777666554
No 11
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.94 E-value=2.5e-25 Score=202.13 Aligned_cols=256 Identities=18% Similarity=0.153 Sum_probs=193.9
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
++.++.+....+......+...+.+|.+.+++|.++.+ .++..++..++..+++++.|+++||+|||+++..+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~ 92 (394)
T PRK10213 19 WSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGV------AGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFA 92 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHH
Confidence 44444445554444455556667789999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 198 (351)
++.+++.++++.+++++.+++.|++.|++.+...+. ..++.|++|+++|++++++...+.++|..++|.+++.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~--- 169 (394)
T PRK10213 93 VLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE--- 169 (394)
T ss_pred HHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 999999999999999999999999999998887765 8899999999999999999999999999999999999987
Q ss_pred CCCCcccccccccCccchhHHHHHHHHHHHHHHH-HhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccc
Q 018727 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS 277 (351)
Q Consensus 199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (351)
.++|+..+.+.+++.++..+. ....||+++++ ++ .....++
T Consensus 170 -------------~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~----~~---------------------~~~~~~~ 211 (394)
T PRK10213 170 -------------LIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEP----SH---------------------QKQNTFR 211 (394)
T ss_pred -------------hcCHHHHHHHHHHHHHHHHHHHHHHCCCCCccc----cc---------------------chhHHHH
Confidence 344555556655444443322 33355542110 00 0012345
Q ss_pred cccccchHHHHHHHHHHHhhHhHHHHHH-HHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc-cccccc
Q 018727 278 LLKNWPLMSSIIVYCVFSLHDMAYSEIF-SLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP-FKIDYR 348 (351)
Q Consensus 278 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~-~~~~~r 348 (351)
.+|+|.++...+..++..........++ |.|..+ +|+++...+.++...+++.+++.+. +++.||
T Consensus 212 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r 278 (394)
T PRK10213 212 LLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNL------AGFGVDGLTLVLLSFGIASFVGTSLSSFILKR 278 (394)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888887666666665555655665 555543 6899999999999888888776654 344444
No 12
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.94 E-value=2.3e-25 Score=203.36 Aligned_cols=286 Identities=12% Similarity=0.156 Sum_probs=200.0
Q ss_pred CchHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (351)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 117 (351)
..++.+..+++..+...++.....+..|.+.+++|.+..+ .+++.+++.++..+++++.|+++||+|||+++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 82 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVD------AASLISAALISRWFGALMFGLWGDRYGRRLPMVT 82 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4456667888889999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727 118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 196 (351)
+.++.+++.++++++++++.+++.|++.|++.+...+. .+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~- 161 (405)
T TIGR00891 83 SIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP- 161 (405)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999998777664 8999999999999999999999999999999999998876
Q ss_pred CCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhh---hhhhhhhhhcccC
Q 018727 197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA---SAEVKEEEGREAT 273 (351)
Q Consensus 197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 273 (351)
..+ .+|+..+.+.++..++.++....+||+++.+..+++++ ...+..++. +...+........
T Consensus 162 ------~~~-------~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (405)
T TIGR00891 162 ------VWG-------DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKA-LVRTMVDILYGGEHRIANIVMTLAA 227 (405)
T ss_pred ------hcC-------ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhh-hhhhHHHHHhccchhhhhhhhhhhH
Confidence 111 12565566665555555555566777654321111100 000000000 0000000000000
Q ss_pred cccccc-ccc-chHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-----ccc
Q 018727 274 PKKSLL-KNW-PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-----KID 346 (351)
Q Consensus 274 ~~~~~l-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-----~~~ 346 (351)
..++.. +++ .+..........+........++|.|+.+. +|++..+++.+.+..+++.+++.+.. |++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g 302 (405)
T TIGR00891 228 AMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-----LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLG 302 (405)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 001111 111 122223333333444445566778777655 78999999999888887776655443 555
Q ss_pred ccc
Q 018727 347 YRF 349 (351)
Q Consensus 347 ~r~ 349 (351)
+|+
T Consensus 303 ~~~ 305 (405)
T TIGR00891 303 RRK 305 (405)
T ss_pred chh
Confidence 554
No 13
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.94 E-value=1.5e-26 Score=196.75 Aligned_cols=270 Identities=40% Similarity=0.635 Sum_probs=193.5
Q ss_pred cchhhhHHHHHHhhcccccccc--hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhH
Q 018727 58 SSLFPFLYFMIKDFQIAKREED--IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135 (351)
Q Consensus 58 ~~~~~~~~~~~~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
....++.....++|+....+.. .....|++.+.+++++++.++.+|.++||+|||+++.+|++..++..++.+.++|+
T Consensus 42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F 121 (451)
T KOG2615|consen 42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF 121 (451)
T ss_pred cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566654443333 56668999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccc
Q 018727 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY 215 (351)
Q Consensus 136 ~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~ 215 (351)
..+++.|++.|+.-|...++.++++|++++|+|+.+++.++.+.++|.++||.++|++.+.. ..++++.+
T Consensus 122 ~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~----------~~~g~~p~ 191 (451)
T KOG2615|consen 122 AAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFS----------SISGSYPF 191 (451)
T ss_pred HHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhH----------hhhccCch
Confidence 77777799999999999999999999999999999999999999999999999999998611 12224455
Q ss_pred hhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHH
Q 018727 216 FLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF 294 (351)
Q Consensus 216 ~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 294 (351)
..|.++..+.... .....+++||+-+.++..++. ....+..+.+ ++..+.++......+||++....+..+..+
T Consensus 192 alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~-~~~~~~~~~~----~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~ 266 (451)
T KOG2615|consen 192 ALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEH-STLQEAADDR----LALLKFARIFKVAALRNPPLLDFISVLRIF 266 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccchhhcccc-cchhhhhhhh----hhhcchhhhhhhhhhcCccccchHHHHHHH
Confidence 5555555555555 456678899986544433111 1111111111 111111122233456676666555555555
Q ss_pred HhhHhHHHHHHHHHhcCCCCC--CcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727 295 SLHDMAYSEIFSLWANSPKKL--GGLNYSTQMVGEVLAITGTKVDTHILP 342 (351)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~g~~~~~~~~~~~~~~~~ 342 (351)
....+.+..+++.|....... .++|+++.+.|-+++..++.+.+.|+.
T Consensus 267 ~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~ 316 (451)
T KOG2615|consen 267 GLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLA 316 (451)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHh
Confidence 566666666666555444333 569999999999999999998887654
No 14
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.94 E-value=1.7e-25 Score=204.42 Aligned_cols=247 Identities=15% Similarity=0.167 Sum_probs=196.4
Q ss_pred HHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHH
Q 018727 46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125 (351)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 125 (351)
+.+..+...+....+.|.+|.+.++++.+..+ .++..+++.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus 21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 94 (413)
T PRK15403 21 LILYDFAAYLTTDLIQPGIINVVRDFNADVSL------APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA 94 (413)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH
Confidence 34445556677788999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcc
Q 018727 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF 204 (351)
Q Consensus 126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 204 (351)
.+++..+++++.++++|+++|++.+...+. ..++.|++|+++|++++++.+....+|..++|.+++.+.+
T Consensus 95 ~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~--------- 165 (413)
T PRK15403 95 CAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH--------- 165 (413)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 999999999999999999999987765554 7889999999999999999999999999999999999887
Q ss_pred cccccccCccchhHHHHHHHHHHHHHHH-HhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccc
Q 018727 205 SSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283 (351)
Q Consensus 205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (351)
.++|+..+++.++..++..+. .+.+||+++.++++. +. ....+.+++++|||.
T Consensus 166 -------~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~---~~----------------~~~~~~~~~ll~~~~ 219 (413)
T PRK15403 166 -------FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPF---SA----------------KSVLRDFRNVFRNRL 219 (413)
T ss_pred -------hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCC---Ch----------------HHHHHHHHHHHcCHH
Confidence 445555566666665555433 455787643211100 00 001123457789999
Q ss_pred hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh
Q 018727 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT 338 (351)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~ 338 (351)
++...+...+.......+..+.|.++.+. +|+++.+.++.......+.++
T Consensus 220 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~gl~~~~~~~~~~i 269 (413)
T PRK15403 220 FLTGAATLSLSYIPMMSWVAVSPVILIDA-----GGMTTSQFAWTQVPVFGAVIV 269 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHh-----cCCCHHHHHHHHHHHHHHHHH
Confidence 99888887777777778888888888775 789999999887666555554
No 15
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.94 E-value=2.8e-25 Score=204.37 Aligned_cols=265 Identities=17% Similarity=0.264 Sum_probs=191.8
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
++.+..+++..+...++.....+..|.+.+++|.++.+ .+++.+++.++..+++++.|+++||+|||+++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~ 90 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSI 90 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 34556777788888888888889999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 198 (351)
++.+++.++++++++++.+++.|++.|++.+...+. ..++.|++|+++|+++.++.+.+..+|.++++.+.+.+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~--- 167 (426)
T PRK12307 91 VAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE--- 167 (426)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc---
Confidence 999999999999999999999999999998776664 8899999999999999999999999999999999988877
Q ss_pred CCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccc
Q 018727 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL 278 (351)
Q Consensus 199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (351)
..+|+.++.+..+..++........||++++..++.++ ..++.+.........++++
T Consensus 168 -------------~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 224 (426)
T PRK12307 168 -------------AYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG----------KGKHSQSAWSVFSLSMKGL 224 (426)
T ss_pred -------------cCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc----------cccccccchhhhhHHHHHH
Confidence 34455555554433333222222334432211100000 0000000000011235567
Q ss_pred ccccchHHHHHHHHH---HHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727 279 LKNWPLMSSIIVYCV---FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP 342 (351)
Q Consensus 279 l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~ 342 (351)
++++.++.......+ ..........++|.|+.+ .|+++.+.+.+.+..+++.+++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~g~~~ 285 (426)
T PRK12307 225 FNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG------EGFDTGVVSNLMTAAAFGTVLGNIV 285 (426)
T ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 788777654433222 222333456678888765 5788888998888888777765544
No 16
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.94 E-value=3.9e-25 Score=206.79 Aligned_cols=280 Identities=18% Similarity=0.212 Sum_probs=210.3
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 122 (351)
+..+++..++..++.....+.+|.+.+++|.+..+ .+++.+.+.++..++.++.|+++||+|||+++.++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 77 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQ------VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAF 77 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHH
Confidence 44666777888888889999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCC
Q 018727 123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP 201 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 201 (351)
.++.++++.+++++.+++.|+++|++.+...+. ..++.|++|+++|+++++++.....+|..++|.+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------ 151 (485)
T TIGR00711 78 TLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE------ 151 (485)
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc------
Confidence 999999999999999999999999998887764 8999999999999999999999999999999999999987
Q ss_pred CcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhH---------HHhhhhhh---------
Q 018727 202 NLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSY---------DALESASA--------- 262 (351)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~~--------- 262 (351)
.+|||+.| ++.....++. ++..+..||+++...++.+...... ....+.+.
T Consensus 152 -~~~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (485)
T TIGR00711 152 -NYHWRWIF---------LINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEI 221 (485)
T ss_pred -CcCceehh---------hhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHH
Confidence 55665554 4444433333 2334456664432221111100000 00000000
Q ss_pred --------------hhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHH
Q 018727 263 --------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEV 328 (351)
Q Consensus 263 --------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ 328 (351)
...+.+.+++....+++++|.++...+..++..........++|.|+++. +|+++.+++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~s~~~~g~~ 296 (485)
T TIGR00711 222 LILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV-----LGYTALQAGLH 296 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHH
Confidence 00011112222334678899998888888888888888888999998876 78999999999
Q ss_pred HHHHhhhHHhhhcc-----ccccccc
Q 018727 329 LAITGTKVDTHILP-----FKIDYRF 349 (351)
Q Consensus 329 ~~~~~~~~~~~~~~-----~~~~~r~ 349 (351)
.....++.+++.+. .|+++|+
T Consensus 297 ~~~~~~~~~~~~~~~g~l~~r~~~~~ 322 (485)
T TIGR00711 297 ILPVGLAPMLSSPIAGRMGDKIDPRK 322 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHH
Confidence 98888777665443 3555554
No 17
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.94 E-value=5.1e-26 Score=205.57 Aligned_cols=267 Identities=14% Similarity=0.136 Sum_probs=198.9
Q ss_pred HHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHH
Q 018727 49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL 128 (351)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 128 (351)
.++...+......+..|.+.+++|.+..+ .+++.++..++..+++++.|+++||+|||+++.++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 76 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTD------LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF 76 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhH------HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence 34556667778888889999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHH-HhhhhhcCCCCCCCCcccc
Q 018727 129 FGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP-ALGGFLAQPAEKYPNLFSS 206 (351)
Q Consensus 129 ~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~gw 206 (351)
++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++| .+++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------- 145 (379)
T TIGR00881 77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE----------- 145 (379)
T ss_pred HHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh-----------
Confidence 999999999999999999998887664 88999999999999999999999999999999 46666655
Q ss_pred cccccCccchhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchH
Q 018727 207 ESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM 285 (351)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (351)
..+|+..+.+.+++.++ .++..++.||+++....++.+++.. ++.+..+.+.+++....+...++++++|.++
T Consensus 146 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (379)
T TIGR00881 146 -----LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN-EEPDGDAEKKEEELTKKQIFLQYVLLNKVLW 219 (379)
T ss_pred -----cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc-cccccccccccccccchHHHHHHHHhcchHH
Confidence 33444444555544443 3444556666554322111111000 0000000000000111122345677889998
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
...+..++.......+..+.|.|+.+. +|+++.+.+.+.+...++.+++++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~ 272 (379)
T TIGR00881 220 YISLGYVFVYVVRTGILDWSPLYLTQE-----KGFSKEKASWAFTLYELGGLVGTLLA 272 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHcchhHHHH
Confidence 888888888888888888999988765 78999999999988888777765543
No 18
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.94 E-value=8.5e-25 Score=203.26 Aligned_cols=272 Identities=12% Similarity=0.085 Sum_probs=193.2
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
++.+...+...++..+......+..|.+.+++|++..+ .+++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~ 108 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSD------IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL 108 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 34455566666666666777888899999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 199 (351)
++++++.++.+++++++.+++.|++.|++.+...+...+++|++|+++|++++++.+...++|..+++.+.+.+......
T Consensus 109 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~ 188 (476)
T PLN00028 109 MLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKD 188 (476)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998889999999999999999998776555566889999999999999999877777777776666544320000
Q ss_pred --CCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccc
Q 018727 200 --YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS 277 (351)
Q Consensus 200 --~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (351)
... ..+||..+.+.+++.++..+..++++++++.... + +.. +. .+.++......+++
T Consensus 189 ~~~~~---------~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~--~--~~~-----~~---~~~~~~~~~~~~~~ 247 (476)
T PLN00028 189 AGAPS---------FTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNY--R--ELK-----KS---GTMPKDSFSKVLRY 247 (476)
T ss_pred cCCcc---------hhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCch--h--hHH-----hc---CccccccHHHHHHH
Confidence 000 1345555566666665554444444433221110 0 000 00 00000001123455
Q ss_pred cccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 278 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
.++++++|...+.+++.......+.++.|.|+.+. +|++...++.+.++.+++.+++++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~ig~~~~ 308 (476)
T PLN00028 248 GVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDR-----FGLSLETAGAIAASFGLMNLFARPAG 308 (476)
T ss_pred HHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 67788888877777666666667777888887664 78999999999998888887777554
No 19
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.94 E-value=3.8e-25 Score=200.60 Aligned_cols=255 Identities=18% Similarity=0.190 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (351)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 121 (351)
.++.+....+..........+.+|.+.+++|.++.+ .+++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~ 79 (385)
T TIGR00710 6 FALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASI------VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFI 79 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHH
Confidence 334444455566677788889999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCC
Q 018727 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200 (351)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 200 (351)
..++.++...+++++.+++.|++.|++.+...+. ..++.|++|+++|++++++.+....+|..++|.+++.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~----- 154 (385)
T TIGR00710 80 FALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV----- 154 (385)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 9999999999999999999999999998877665 8999999999999999999999999999999999999887
Q ss_pred CCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccc
Q 018727 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL 279 (351)
Q Consensus 201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (351)
..+|+.++.+.++..++.. +..+..||+++++.++ +.+ ......++.+
T Consensus 155 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------~~~~~~~~~~ 203 (385)
T TIGR00710 155 -----------WLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI--QIS------------------TYFETFLLLL 203 (385)
T ss_pred -----------HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC--CHH------------------HHHHHHHHHH
Confidence 4455555566555554443 3344566654322110 000 0011244567
Q ss_pred cccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
++|+++...+...........+..+.|.++.+. +|+++.+++.+.+...++.+++++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~~~ 262 (385)
T TIGR00710 204 KSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI-----MGVSPSVFGLLFALNIIAMIFGGFLN 262 (385)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777666666666666666777776654 78899999999888887777655443
No 20
>PRK10133 L-fucose transporter; Provisional
Probab=99.93 E-value=9.1e-25 Score=200.73 Aligned_cols=272 Identities=14% Similarity=0.120 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
..+..+.+..+...+......+.+|.+.+++|.++.+ .++..+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~------~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~ 99 (438)
T PRK10133 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 4455666677777888888889999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHh---hhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727 121 SVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (351)
Q Consensus 121 ~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 196 (351)
+..++.+++ ..+++++.++++|+++|++.|...+. +.++.|+.|+++|...+++.+....+|..++|.+++.+...
T Consensus 100 ~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~ 179 (438)
T PRK10133 100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998775 45789999999999999998887775 88888988777777789999999999999999998776521
Q ss_pred CCCC-----------CCcccccccccCccchhHHHHHHHHHH-HHHHH-HhccccccccCCCCCccchhhHHHhhhhhhh
Q 018727 197 AEKY-----------PNLFSSESLFGKFPYFLPCLCISLFAF-GVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAE 263 (351)
Q Consensus 197 ~~~~-----------~~~~gw~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (351)
..+. ....+||..+ -.+|+.++........ +.++. ....||.+.++ .+ +..
T Consensus 180 ~~~~~~~~~~~~l~~~~~~~w~~~~-~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~---~~--~~~---------- 243 (438)
T PRK10133 180 NVPHQSQDVLDKMTPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS--DAK---------- 243 (438)
T ss_pred CCcccchhhhhccChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc---cc--ccc----------
Confidence 1000 0012565554 3567777764333222 22222 23344321110 00 000
Q ss_pred hhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHh-cCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727 264 VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA-NSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP 342 (351)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~ 342 (351)
........++++++|.++...+..+++.....+...+.+.|+ ++. +|+++.+++..+....++.+++++.
T Consensus 244 ----~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-----~g~s~~~ag~~~~~~~~~~~vG~~~ 314 (438)
T PRK10133 244 ----QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIGRFT 314 (438)
T ss_pred ----ccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000112345678899888777777777777777777788775 333 7999999999999999988887765
Q ss_pred c
Q 018727 343 F 343 (351)
Q Consensus 343 ~ 343 (351)
.
T Consensus 315 ~ 315 (438)
T PRK10133 315 G 315 (438)
T ss_pred H
Confidence 4
No 21
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.93 E-value=9.3e-25 Score=197.89 Aligned_cols=251 Identities=17% Similarity=0.230 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
+.++.+....++.........+.+|.+.+++|.+..+ .+++.+.+.+++.+++++.|+++||+|||+++.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 76 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPA------AGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVA 76 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHH------HhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence 3455667777778888888899999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 199 (351)
+.+++.++++++++++.+++.|++.|++.+...+. ..++.|++|+++|++++++...+..+|..++|.+++.+.+
T Consensus 77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---- 152 (382)
T PRK10091 77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ---- 152 (382)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh----
Confidence 99999999999999999999999999998876665 7888999999999999999999999999999999999887
Q ss_pred CCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccc
Q 018727 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL 278 (351)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (351)
..+|+.++.+.++..++.. .....+||.+++.+ . + . + ...+.
T Consensus 153 ------------~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~---~--~-~--------------~-----~~~~~ 195 (382)
T PRK10091 153 ------------EFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAK---G--G-L--------------R-----EQFHF 195 (382)
T ss_pred ------------hccHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc---c--C-H--------------H-----HHHHH
Confidence 4445555566655544433 33455676432110 0 0 0 0 00123
Q ss_pred ccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
+|++..+...+...+.+.......++++.|+.+. .|+++.+.+.+.+..+++.+++++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~ig~~~~ 255 (382)
T PRK10091 196 LRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFI-----SGFSETSMTFIMMLVGLGMVLGNLLS 255 (382)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhHHH
Confidence 5666666655444444434444444555566544 68999999999999888887766554
No 22
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.93 E-value=1e-24 Score=196.54 Aligned_cols=279 Identities=13% Similarity=0.132 Sum_probs=197.1
Q ss_pred HHHHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 121 (351)
++..++..+..........+..|. +.+++|++..+ .+++.+++.+++.+++++.|+++||+|||+++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 76 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQ------LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLL 76 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHH------hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 345666777777777888899995 88999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhh-hHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC--
Q 018727 122 VVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE-- 198 (351)
Q Consensus 122 ~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-- 198 (351)
..++.+++++++ +++.+++.|++.|++.+...+...+++|++|+++|++++++...+.++|..+++.+++.+.....
T Consensus 77 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~ 156 (366)
T TIGR00886 77 LAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG 156 (366)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999998 99999999999999866665568899999999999999999988778888877777766553110
Q ss_pred -CCCCcccccccccCccchhHHHH-HHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccc
Q 018727 199 -KYPNLFSSESLFGKFPYFLPCLC-ISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK 276 (351)
Q Consensus 199 -~~~~~~gw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
+.+...+||+.| . .. ..+..++.++.....+|+++.+.++++.+.. +.. .+. +.+.....+
T Consensus 157 ~~~~~~~~w~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~---~~~~~~~~~ 219 (366)
T TIGR00886 157 AGLPAHLAWGWAF-----V---IVPAGILLLPALLIFFVGADTPPGKPATGKLSFK--GAR----WSV---GTGALGDQL 219 (366)
T ss_pred ccccccccccchh-----H---HHHHHHHHHHHHHHHHhcccCCcccccchhcccc--ccc----ccc---cchhHHHHH
Confidence 001123444333 0 22 2222233334444556554322111100000 000 000 000111345
Q ss_pred ccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-----cccccc
Q 018727 277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-----KIDYRF 349 (351)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-----~~~~r~ 349 (351)
+.+++|+++...+..++.......+..+.+.|+.+. +|+++.+++.+.+...+..+++++.. |+++|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 292 (366)
T TIGR00886 220 KVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQ-----FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR 292 (366)
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch
Confidence 577888888877777777777777888889888775 78999999988888887777766543 555544
No 23
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.93 E-value=6e-25 Score=204.35 Aligned_cols=272 Identities=13% Similarity=0.111 Sum_probs=197.3
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHHH----------------------hhcccccccchhhhhHHHHHHHHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMIK----------------------DFQIAKREEDIGSYAGYVGSSFMFGRAL 97 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 97 (351)
+.....+++.......+....+...+.+.+ +++++..+ .|++.+.+.+++.+
T Consensus 18 ~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~~ 91 (465)
T TIGR00894 18 LFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGAL------QGLILSSHFYGQII 91 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHH------hhHHHHHHHHHHHH
Confidence 333445555555556665555555544444 66777777 99999999999999
Q ss_pred hhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhH
Q 018727 98 TSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST 174 (351)
Q Consensus 98 ~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~ 174 (351)
++++.|+++||+|||+++.++.++++++.+++..+ .+++.+++.|+++|++.+...+. ..+++|++|+++|++++++
T Consensus 92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 171 (465)
T TIGR00894 92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171 (465)
T ss_pred HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999888888776543 55788999999999998888775 8999999999999999999
Q ss_pred HHHHHHhHHHHHHHhhhhhcCCCCCCCCc-ccccccccCccchhHHHHHHHHHHHHHHHHhc-cccccccCCCCCccchh
Q 018727 175 VSTAWGIGLIIGPALGGFLAQPAEKYPNL-FSSESLFGKFPYFLPCLCISLFAFGVTIAAFW-LPETLHRHNDDDDSCDV 252 (351)
Q Consensus 175 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~ 252 (351)
...+..+|.+++|.+++.+.+ . .|||. ++++.++..++..+.++. .+|+|+...... ++
T Consensus 172 ~~~~~~~g~~i~~~l~~~l~~-------~~~gw~~---------~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~ 232 (465)
T TIGR00894 172 STSGFQLGTFIFLPISGWLCE-------SWGGWPM---------IFYVFGIVGCAWSLLWFVFPADDPSIHPCIS---KF 232 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------ccCCCCe---------ehhhhhHHHHHHHHHHHHHhcCCcccCCCCC---HH
Confidence 999999999999999999887 3 24544 446666655554444433 445443222111 11
Q ss_pred hHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHH
Q 018727 253 SYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAIT 332 (351)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~ 332 (351)
+++..++.. +.+..+.+...+++++++++.+|...+..++.+.....+.+++|.|+.+. +|++..+.|++.++.
T Consensus 233 ~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~g~~~~~~ 306 (465)
T TIGR00894 233 EKKYINSSL-QGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV-----LRVSGKENGLLSSLP 306 (465)
T ss_pred HHHHHHhhc-ccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcChHHhHHHHHHH
Confidence 111111110 00000111234577889999999999999998888888899999998776 789999999988887
Q ss_pred hhhHHhhhcc
Q 018727 333 GTKVDTHILP 342 (351)
Q Consensus 333 ~~~~~~~~~~ 342 (351)
.++.+++.+.
T Consensus 307 ~~~~~i~~~~ 316 (465)
T TIGR00894 307 YLFAWLCSIF 316 (465)
T ss_pred HHHHHHHHHH
Confidence 7777665444
No 24
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.93 E-value=5.3e-25 Score=198.01 Aligned_cols=257 Identities=16% Similarity=0.120 Sum_probs=193.9
Q ss_pred HHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHH
Q 018727 46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125 (351)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 125 (351)
++...++..+......+.+|.+..+++.+..+ .+++.+++.++..+++++.|+++||+|||+++..+.++..++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~ 77 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASV------LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVL 77 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHH
Confidence 45566677777778888889999999999888 999999999999999999999999999999999999988888
Q ss_pred HHHhhhhh-----hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727 126 NTLFGLSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (351)
Q Consensus 126 ~~~~~~~~-----~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 199 (351)
.++..... +++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---- 153 (365)
T TIGR00900 78 VAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA---- 153 (365)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----
Confidence 88777776 9999999999999998887775 8999999999999999999999999999999999999987
Q ss_pred CCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccc
Q 018727 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL 279 (351)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (351)
..+|+..+.+.++..++..+..+..++++..+.++++.++.. ..+.....+.++
T Consensus 154 ------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 207 (365)
T TIGR00900 154 ------------TLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAV--------------LRDTREGIKFVL 207 (365)
T ss_pred ------------HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhH--------------HHHHHhHHHHHH
Confidence 445555556655555444433333322211111111000000 000112345567
Q ss_pred cccchHHHHHHHHHHHhhHhHHH-HHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 280 KNWPLMSSIIVYCVFSLHDMAYS-EIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
|+|.++..++..++......... .+.|.|..+. ++.++.+.+.+.....++.+++.+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (365)
T TIGR00900 208 KNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY-----LGRGSTHYGWVLAAFGLGALLGALLL 267 (365)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777666665555 7788777665 68899999999988888777755443
No 25
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.93 E-value=9e-25 Score=204.12 Aligned_cols=285 Identities=13% Similarity=0.094 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHH-HHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
+.+...++..++..++...+....|.+.++++.+.+.. .+....+ ..++..+++.++++++|+++||+|||+++.++.
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPS-VQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 44556778889999999999999999999987554331 0110111 247778899999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHH--------HHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727 120 ASVVIFNTLFGLSVNFWM--------AVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG 190 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 190 (351)
++++++.+++++++++.. +++.|+++|++.|...+ ...+++|++|+++|+++.++...+..+|..+++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999864 88999999999887666 499999999999999999999888888888888666
Q ss_pred hhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhc
Q 018727 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR 270 (351)
Q Consensus 191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (351)
..+...... . ....++||.++++.++..++.++....+||++++....++.++ ...+. ..+.
T Consensus 175 ~~~~~~~~~-------~-~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~--------~~~~~--~~~~ 236 (490)
T PRK10642 175 VLISTIVGE-------A-NFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQ--------GDREG--LQDG 236 (490)
T ss_pred HHHHHhcCH-------H-HhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhh--------hcccc--cccc
Confidence 544321000 0 0014567777777766555555556678887653211100000 00000 0001
Q ss_pred ccCcccccccc-cchHH-HHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh-----hhccc
Q 018727 271 EATPKKSLLKN-WPLMS-SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT-----HILPF 343 (351)
Q Consensus 271 ~~~~~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~-----~~~~~ 343 (351)
...++++++++ +..+. .+...++..........+.|.|+.+. +|++..+.+.......++.++ +.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 311 (490)
T PRK10642 237 PKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN-----LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD 311 (490)
T ss_pred ccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234445543 22222 22223334455566777888888654 677777776666655555544 33444
Q ss_pred cccccc
Q 018727 344 KIDYRF 349 (351)
Q Consensus 344 ~~~~r~ 349 (351)
|+++|+
T Consensus 312 r~grr~ 317 (490)
T PRK10642 312 RFGRRP 317 (490)
T ss_pred HhccHH
Confidence 777765
No 26
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.93 E-value=6.6e-25 Score=196.46 Aligned_cols=254 Identities=25% Similarity=0.455 Sum_probs=191.6
Q ss_pred HHHHHHhhccccchhhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHH
Q 018727 47 WIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 125 (351)
++..++..+......+.+| .+.+++|.+..+ .+++.+++.++..+++++.|+++||+|||+++.++.++.+++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~ 75 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQ------IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG 75 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHC------HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH
Confidence 4566677777778888998 888999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcc
Q 018727 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF 204 (351)
Q Consensus 126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 204 (351)
.++..++++.+.+++.|++.|++.+...+. ..++.|++|+++|++++++.+.+..+|.+++|.+++.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~--------- 146 (352)
T PF07690_consen 76 SLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS--------- 146 (352)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------
T ss_pred HHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh---------
Confidence 666666677789999999999998887775 9999999999999999999999999999999999999987
Q ss_pred cccccccCccchhHHHHHHHHHHHHHHH-HhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccC-ccccccccc
Q 018727 205 SSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PKKSLLKNW 282 (351)
Q Consensus 205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 282 (351)
..+|+.++++.++..++..++ ..+.+++++++..++++++. +++.++.. .++.+++++
T Consensus 147 -------~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 206 (352)
T PF07690_consen 147 -------YFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE-------------SKKPKPLKPGFKSLFKNP 206 (352)
T ss_dssp -------HCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------------HHHCCCH-CTHHHHHH
T ss_pred -------ccccccccccccchhhhhhhhHhhhhhhcccccccccccccc-------------cccccccccccccccccc
Confidence 444555556666666665443 34555544433322221110 00111222 366777787
Q ss_pred chHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCc-hhhhHHHHHHHhhhHHhhh
Q 018727 283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS-TQMVGEVLAITGTKVDTHI 340 (351)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~g~~~~~~~~~~~~~~ 340 (351)
.+|......++..........+.|.|+.+. +|++ ..+.+.+.+..++..+++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 260 (352)
T PF07690_consen 207 VLWILLIAFFLFFFVFSGFSFFLPLYLQEV-----LGFSGPSQAGLLFSIFGIVGIIGS 260 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHCCTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHhhcccchhhhhc-----cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777556666666666777888888886655 7888 7889988888887776544
No 27
>PRK10504 putative transporter; Provisional
Probab=99.93 E-value=4.7e-24 Score=198.71 Aligned_cols=281 Identities=16% Similarity=0.137 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
+.++.+++..++..++.+...+.+|.+.+++|.+..+ .+++.+.+.++..++.+++|+++||+|||++++.+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~ 83 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLH------MHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIV 83 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 4566777888888888888999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 199 (351)
+..++.+++.++++++.+++.|+++|++.+...+. ..++.|.+|+++|+++.++.+...++|..++|.+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~---- 159 (471)
T PRK10504 84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE---- 159 (471)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh----
Confidence 99888888888899999999999999998887765 8899999999999999999999999999999999999988
Q ss_pred CCCcccccccccCccchhHHHHHHHHHHHHHHH-HhccccccccCCCCCccchhhHH---------Hhhhhh--------
Q 018727 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYD---------ALESAS-------- 261 (351)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~---------~~~~~~-------- 261 (351)
..+|+..+.+......+..+. ....|+.+.... +.+....... ..+..+
T Consensus 160 ------------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (471)
T PRK10504 160 ------------YASWHWIFLINIPVGIIGAIATLMLMPNYTMQTR-RFDLSGFLLLAVGMATLTLALDGSKGLGLSPLA 226 (471)
T ss_pred ------------hccHHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCChHHHHHHHHHHHHHHHHHhcCCcCCcchHH
Confidence 334455555555444443333 333444332211 1111000000 000000
Q ss_pred --------------hhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHH
Q 018727 262 --------------AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE 327 (351)
Q Consensus 262 --------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~ 327 (351)
...++.+..++....+++|||+++..++..++..........+.|.|++.. .|.++.++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~ 301 (471)
T PRK10504 227 IAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG-----LGFSPFHAGL 301 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHH
Confidence 000111111222234578999998888888877777777777888887764 7889999998
Q ss_pred HHHHHhhhHHhh-----hccccccccc
Q 018727 328 VLAITGTKVDTH-----ILPFKIDYRF 349 (351)
Q Consensus 328 ~~~~~~~~~~~~-----~~~~~~~~r~ 349 (351)
+.....++.+++ .+..|+++|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~l~~r~g~~~ 328 (471)
T PRK10504 302 MMIPMVLGSMGMKRIVVQVVNRFGYRR 328 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 888777666543 3334666554
No 28
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.93 E-value=5.3e-24 Score=193.54 Aligned_cols=234 Identities=12% Similarity=0.050 Sum_probs=181.7
Q ss_pred cchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHH
Q 018727 58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM 137 (351)
Q Consensus 58 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
....+.+|.+.+++|++..+ .+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.++++++++++.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ 99 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSV------AALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSAL 99 (393)
T ss_pred hccchhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHH
Confidence 66779999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccch
Q 018727 138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF 216 (351)
Q Consensus 138 l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~ 216 (351)
+++.|+++|++.+...+. ..++.|++| ++|+++++++..+..+|..+++.+++.+.+. ..+| +
T Consensus 100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~------~~~w---------~ 163 (393)
T PRK09705 100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH------SETW---------Y 163 (393)
T ss_pred HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCH---------H
Confidence 999999999998887665 888999997 7799999999999999999999999888761 1134 3
Q ss_pred hHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHh
Q 018727 217 LPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSL 296 (351)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (351)
..+...++..++..+..+...+..+ .++++ + +...++.++++..+...+..++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------------------~---~~~~~~~l~~~~~~~l~~~~~~~~~ 219 (393)
T PRK09705 164 QTLAWWALPAVVALFAWWWQSAREV--ASSHK-------------------T---TTTPVRVVFTPRAWTLGVYFGLING 219 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC--ccccC-------------------C---CcCCcccccCHhHHHHHHHHHHHHH
Confidence 3333333333332222222211111 00000 0 0122345677777777777777777
Q ss_pred hHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
......++.|.|+.+ +|+++.++|.+.+..+++.+++++..
T Consensus 220 ~~~~~~~~lp~~l~~------~g~s~~~ag~~~~~~~i~~i~g~~~~ 260 (393)
T PRK09705 220 GYASLIAWLPAFYIE------IGASAQYSGSLLALMTLGQAAGALLM 260 (393)
T ss_pred HHHHHHHHHHHHHHH------cCCChhhhhHHHHHHHHHHHHHHHHH
Confidence 777888889988875 68899999999999999888877655
No 29
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.93 E-value=2.9e-24 Score=196.38 Aligned_cols=261 Identities=16% Similarity=0.088 Sum_probs=191.6
Q ss_pred chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
++..+...+...++..++.....+..|.+.+++|.++.+ .+++.+...++..+++++.|+++||+|||+++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 86 (406)
T PRK11551 13 LALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQ------MGWAFSAGILGLLPGALLGGRLADRIGRKRILIVS 86 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 344555666778888888888999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727 119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 197 (351)
.++..++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.+++.+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-- 164 (406)
T PRK11551 87 VALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG-- 164 (406)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 9999998888889999999999999999988777665 8999999999999999999999999999999999988876
Q ss_pred CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccc
Q 018727 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK 276 (351)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
..+|+..+.+.+++.++. ++...++||++++..++.++++. +. .. + ...
T Consensus 165 --------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~-------~~--~-----~~~ 214 (406)
T PRK11551 165 --------------DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR--AP-------VL--R-----ALF 214 (406)
T ss_pred --------------ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh--hh-------hH--H-----HHh
Confidence 445555556655444433 33445578765432211100000 00 00 0 000
Q ss_pred ccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
+..+.+..+......++..........+.|.|+.+ .|+++.+++.+.+...++.+++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~~~~~~~ 275 (406)
T PRK11551 215 GEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG------QGLSRSQAGLVQIAFNIGGALGSLLI 275 (406)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCChhhhhHHHHHHHHHHHHHHHHH
Confidence 00111223333333444444455666677877765 68899999999988888777665543
No 30
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.93 E-value=2.3e-24 Score=195.79 Aligned_cols=256 Identities=13% Similarity=0.121 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (351)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 121 (351)
.++.++...++..++........+.+.++++.+..+ .+++.+.+.+++.+..+++|+++||+|||++++++.++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~ 77 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIALLKELHYPDWS------QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGI 77 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHH
Confidence 345566777777776655666666778889988888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCC
Q 018727 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200 (351)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 200 (351)
.+++.+++.+..+. ++.|+++|++.+...|. .+++.|++|+++|+++.++.+....+|.++||.++|.+.+
T Consensus 78 ~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~----- 149 (393)
T PRK11195 78 KLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD----- 149 (393)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 88888777666554 77899999999888886 9999999999999999999999999999999999999986
Q ss_pred CCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccccc
Q 018727 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK 280 (351)
Q Consensus 201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (351)
. .|+.++.+.+...++..+..+.+||++++++..+.+.....+ +. ...++.+++
T Consensus 150 -----------~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~-------~~~~~~l~~ 203 (393)
T PRK11195 150 -----------P-HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWNPIALLR-------DF-------FHACRVLWR 203 (393)
T ss_pred -----------H-HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCHHHHHH-------HH-------HHHHHHHHh
Confidence 1 144444544444444445556778765332211111000000 00 011245677
Q ss_pred ccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727 281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP 342 (351)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~ 342 (351)
+|.++.......+...........++.|+++. +|+++.+.|.+.+..+++.+++.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----lg~s~~~~G~~~~~~~~g~i~g~~~ 260 (393)
T PRK11195 204 DKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA-----LGITLNQPAYLQAVVAIGIAVGAGA 260 (393)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChhHHHHHHHHHHHHHHHHHHH
Confidence 77776655554444455555666677777766 7899999999999999888776554
No 31
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.93 E-value=5.5e-24 Score=192.83 Aligned_cols=236 Identities=12% Similarity=0.086 Sum_probs=180.5
Q ss_pred CchHHHHHHHHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHH
Q 018727 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII 116 (351)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~ 116 (351)
..++.++..++..++.........+..+.+.+ ++|+|.+| .+++.+++.+++.++.++.|++.||+|.|+++.
T Consensus 31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q------~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~ 104 (462)
T PRK15034 31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQ------LFLLTALPSVSGALLRVPYSFMVPIFGGRRWTV 104 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 34566777777777888888888998888876 89999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhh-----hhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727 117 MGTASVVIFNTLFGLS-----VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG 191 (351)
Q Consensus 117 ~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 191 (351)
++.+++.+..++.+++ ++++.+++.|++.|++.+.+.+....+++++|+++||+++|+.....++|..+++++..
T Consensus 105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p 184 (462)
T PRK15034 105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP 184 (462)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999888876 79999999999999985545556889999999999999999997666677766555554
Q ss_pred hhc-----CCCCCCCCccccccccc----CccchhHHHHHHHHHHHHHHH-HhccccccccCCCCCccchhhHHHhhhhh
Q 018727 192 FLA-----QPAEKYPNLFSSESLFG----KFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESAS 261 (351)
Q Consensus 192 ~l~-----~~~~~~~~~~gw~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 261 (351)
.+. . .+||+.... ..+|+....+..+..++..+. ++.+++.+. . +.
T Consensus 185 ~~i~~~l~~-------~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-~---~~------------- 240 (462)
T PRK15034 185 LVIFVPVFA-------FLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-S---RA------------- 240 (462)
T ss_pred HHHHHHHHH-------HhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-c---cc-------------
Confidence 332 3 345544332 334666666655555554433 333333221 0 00
Q ss_pred hhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCC
Q 018727 262 AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSP 312 (351)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (351)
..+...+.+|+|..|...+.+++.+....++..++|.|+.+.
T Consensus 241 ---------~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~ 282 (462)
T PRK15034 241 ---------SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ 282 (462)
T ss_pred ---------CHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011344578999999999999999999999999999987764
No 32
>PRK03699 putative transporter; Provisional
Probab=99.93 E-value=1e-23 Score=191.88 Aligned_cols=261 Identities=11% Similarity=0.122 Sum_probs=194.2
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
++..+.+++..++.........+.+|.+.+++|++..+ .+++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~ 79 (394)
T PRK03699 6 IKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSS------MSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF 79 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455666777777777788889999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 198 (351)
++.+++.++.+++++++.+++.|++.|++.+...+ ...++.|++|+++|+++++..+....+|..++|.+.+.+.+.
T Consensus 80 ~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-- 157 (394)
T PRK03699 80 ALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR-- 157 (394)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 99999999999999999999999999998777665 488899999999999999999889999999999998877641
Q ss_pred CCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccc
Q 018727 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL 278 (351)
Q Consensus 199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (351)
..+|+.++.+.++..++..+..++ .+.|+.++++++ + . +. . .++
T Consensus 158 -------------~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~~~--~-~--------------~~-~---~~~- 201 (394)
T PRK03699 158 -------------SIEWYWVYACIGLVYVAIFILTLF-SEFPALGKHAPK--A-D--------------KP-V---AKE- 201 (394)
T ss_pred -------------cccHHHHHHHHHHHHHHHHHHHHh-cCCccccccCcc--c-c--------------Cc-c---ccc-
Confidence 234555556655555444333332 221111100000 0 0 00 0 011
Q ss_pred ccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-----cccccc
Q 018727 279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-----KIDYRF 349 (351)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-----~~~~r~ 349 (351)
..++.++...+..++.......+..+.|.|+.+. +|+++.+.+.+.+...++..++++.. |+++|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 272 (394)
T PRK03699 202 KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKK-----FGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR 272 (394)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 1235566666666666677778888999998765 78999999998888777766655443 555544
No 33
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.92 E-value=7.1e-25 Score=208.84 Aligned_cols=284 Identities=16% Similarity=0.159 Sum_probs=208.0
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
.+++..+...+..+...+.++.+.++|+++..+ .|++.+.+.++++++.++.++++||+|||+.+.++.+++++
T Consensus 37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~------~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l 110 (633)
T TIGR00805 37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSS------SGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL 110 (633)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCc------ceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence 334455566666678888889999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHhhhhh---------------------------------------------------hHHHHHHHHHHhhhhcccch
Q 018727 125 FNTLFGLSV---------------------------------------------------NFWMAVLTRFLLGSLNGLLG 153 (351)
Q Consensus 125 ~~~~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~ 153 (351)
+.+++++.+ .+..++++|+++|+|.+...
T Consensus 111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~ 190 (633)
T TIGR00805 111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF 190 (633)
T ss_pred HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence 998887653 24567889999999988887
Q ss_pred hH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCc---------ccccccccCccchhHHHHHH
Q 018727 154 PI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL---------FSSESLFGKFPYFLPCLCIS 223 (351)
Q Consensus 154 ~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~---------~gw~~~~~~~~~~~~~~~~~ 223 (351)
+. .+++.|++|+++|++++++++.+..+|.++|+++++++.+....|+.. .+||| ..+||..|++.+
T Consensus 191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprW---iGaWwl~Fli~g 267 (633)
T TIGR00805 191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRW---IGAWWIGFLICG 267 (633)
T ss_pred hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccH---HHHHHHHHHHHH
Confidence 75 999999999999999999999999999999999999988632211100 01111 224788888888
Q ss_pred HHHHHHHHHHhccccccccCCCCCccchhhHHHhhh----hhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHh
Q 018727 224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALES----ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299 (351)
Q Consensus 224 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 299 (351)
++.++..+.++++|++.+....+.+.+..+.+..+. ...+..+.........+++++||.++...+..++......
T Consensus 268 ~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~ 347 (633)
T TIGR00805 268 GVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFN 347 (633)
T ss_pred HHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 777776666667776543221110000000000000 0000000011122346678999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhh-HHhhhcc
Q 018727 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTK-VDTHILP 342 (351)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~-~~~~~~~ 342 (351)
++..++|.|+++. +|+++.+++.+.+...+. .+++.+.
T Consensus 348 ~~~~~lP~yl~~~-----~g~s~~~ag~l~~~~~i~~~~vG~~l 386 (633)
T TIGR00805 348 GYITFLPKYLENQ-----YGISSAEANFLIGVVNLPAAGLGYLI 386 (633)
T ss_pred HHHHHHHHHHHHH-----cCCcHHHHHHHhhhhhhhHHHHHHhh
Confidence 9999999999887 899999999998876653 3344333
No 34
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.92 E-value=2.6e-24 Score=194.24 Aligned_cols=247 Identities=13% Similarity=0.105 Sum_probs=181.8
Q ss_pred cccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhH
Q 018727 56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135 (351)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
..+...+..|.+.+++|++..+ .+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~ 91 (377)
T TIGR00890 18 YVYTWTLLAPPLGRYFGVGVTA------VAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSL 91 (377)
T ss_pred HHhhhhhHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHH
Confidence 3556778899999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCcc
Q 018727 136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP 214 (351)
Q Consensus 136 ~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~ 214 (351)
+.+++.|++.|++.+...+ ....+.|++| ++|+++.++...+.++|..+++.+.+.+.+ ..+
T Consensus 92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------~~~ 154 (377)
T TIGR00890 92 AALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN----------------LEG 154 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh----------------ccc
Confidence 9999999999998876555 4777888887 579999999999999999887777666665 345
Q ss_pred chhHHHHHHHHHHHHHHH-HhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHH
Q 018727 215 YFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV 293 (351)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 293 (351)
|+..+.+.++..++..+. .++++++++.+..++++.+ ......++.++++.++...+..++
T Consensus 155 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 216 (377)
T TIGR00890 155 VPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVS------------------VKDYTVWEMLRTPQFWVLYLSFFL 216 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecCchhccccCcccc------------------hhhhhHHHHHcCccHHHHHHHHHH
Confidence 566666666655554433 3444443322111100000 001123456778888777666666
Q ss_pred HHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-----cccccc
Q 018727 294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-----KIDYRF 349 (351)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-----~~~~r~ 349 (351)
..........+.+.|.++ ++.+..+.+.+.+...++.+++++.. |+++|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 271 (377)
T TIGR00890 217 NAVSGLLLIGLYKPYGQS------LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK 271 (377)
T ss_pred HhHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 655555555666666544 67888888888888877776655443 555554
No 35
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.92 E-value=1.7e-23 Score=189.70 Aligned_cols=249 Identities=15% Similarity=0.154 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
+.++.++...++.........+.+|.+.+++|.|..+ .|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~ 79 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQ------VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASL 79 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888899999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 199 (351)
+.+++..+++.+++++.+++.|+++|++.+...+. ...+.+..++++|+++++.++.+.++|..+||.+++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--- 156 (381)
T PRK03633 80 IFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE--- 156 (381)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence 99999999999999999999999999998877664 67777889999999999999999999999999999988761
Q ss_pred CCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccc
Q 018727 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL 279 (351)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (351)
..| ...|.. ......+..+.....++++ . +++ +..+.++.+
T Consensus 157 ----~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~--~--~~~----------------------~~~~~~~~~ 197 (381)
T PRK03633 157 ----LMS-----VLPWVT----GLVLAAILPLLFTRILNQQ--A--ENH----------------------DSTSIWPML 197 (381)
T ss_pred ----ccc-----hHHHHH----HHHHHHHHHHHHhcccCCC--C--CCC----------------------CCCCHHHHH
Confidence 111 111221 1111111111111122210 0 000 011234456
Q ss_pred cccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
|+|.++......+..........+++|.|+++ .|.++..+|.+.+...++.+++++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~~~ 255 (381)
T PRK03633 198 KLRQARLGVNGCIISGIVLGSLYGLMPLYLNH------QGMSDASIGFWMALLVSAGILGQWPI 255 (381)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 77777665444444444455666778888765 58888899998888888777766553
No 36
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.1e-25 Score=196.76 Aligned_cols=276 Identities=18% Similarity=0.144 Sum_probs=206.4
Q ss_pred CCCCCchHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChH
Q 018727 34 TKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP 113 (351)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~ 113 (351)
.....+++.+..+++..+++.++.+.+....+.+.+.+|++++. .|++.+.+.+.+.+++|+.|+++||+.||+
T Consensus 26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~------~Gll~~vf~v~~~i~sPl~gyLadryNR~~ 99 (493)
T KOG1330|consen 26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSE------LGLLQTVFIVVFMIASPLFGYLADRYNRKR 99 (493)
T ss_pred cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchh------ccchhHHHHHHHHHHHHHHHHHHhhcCcce
Confidence 34455667777889999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727 114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192 (351)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 192 (351)
++.+|..++.++.+.++++..+|+++++|.+.|+|.+.+.++ +.+++|.+|.++|++++++++.+..+|..+|.+++..
T Consensus 100 v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~ 179 (493)
T KOG1330|consen 100 VIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSV 179 (493)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeee
Confidence 999999999999999999999999999999999999998885 9999999999999999999999999999999999998
Q ss_pred hcCCCCCCCCccc-ccccccCccchhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhc
Q 018727 193 LAQPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR 270 (351)
Q Consensus 193 l~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (351)
+.+ ..+ ||+.| ...+++.++ .++..++++|+.+...++.+...+. ..+...
T Consensus 180 va~-------~~~~Wr~af---------~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----------~~~~ts 232 (493)
T KOG1330|consen 180 VAS-------LTFWWRWAF---------RGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-----------VKPFTS 232 (493)
T ss_pred ecc-------CccceEEEE---------EeehHHHHHHHHHHHhhccCcccccccccccCCcC-----------CCCccc
Confidence 887 223 44333 344444444 4455666777665322221111100 000111
Q ss_pred ccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcccc
Q 018727 271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPFK 344 (351)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~ 344 (351)
..+..+.+.+++.+....+.+....+...++.-+.|.+....... .|++..+..++.++...++.++.+.++
T Consensus 233 ~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~--~~~~~~~~~ifg~vt~~~G~lGvl~Gg 304 (493)
T KOG1330|consen 233 VWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYEL--IGFDHNATLIFGGVTCAGGSLGVLFGG 304 (493)
T ss_pred hHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHH--hCCccccchhhhhHHHhhchhhheehH
Confidence 223334445656665555666666666666655555554433222 346666677777777777777776664
No 37
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.92 E-value=1.3e-23 Score=192.12 Aligned_cols=250 Identities=18% Similarity=0.166 Sum_probs=188.6
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
.+.+..++..+....+.+.+|.+.+++|.+..+ .++..+.+.+++.+++++.|.++||+|||+++.++..+..+
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 90 (406)
T PRK15402 17 CLVLFEFATYIANDMIQPGMLAVVEDFNAGAEW------VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL 90 (406)
T ss_pred HHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 444555566667888888999999999999988 99999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCc
Q 018727 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL 203 (351)
Q Consensus 125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 203 (351)
+.++...+++++.+++.|++.|++.+...+. ..++.|.+|+++|++..++......+|..++|.+++.+.+ .
T Consensus 91 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-------~ 163 (406)
T PRK15402 91 TCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH-------V 163 (406)
T ss_pred HHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------c
Confidence 9988889999999999999999988776664 8889999999999999999888888999999999999887 3
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHH-HHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccccccc
Q 018727 204 FSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW 282 (351)
Q Consensus 204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (351)
.+ |+.++.+.++..++..+ .....||+++...++.+ . .+....++.++++|
T Consensus 164 ~~---------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~~~ 215 (406)
T PRK15402 164 LP---------WRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLS--L-----------------KELGRDYKLVLKNR 215 (406)
T ss_pred cC---------ccHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc--H-----------------HHHHHHHHHHHcCc
Confidence 34 44444555555444433 34456665432111000 0 00111345678888
Q ss_pred chHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727 283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI 340 (351)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~ 340 (351)
.++...+..++.......+..+.|.|+.+. +|+++.+.+.......++.+++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~~~~~g~ 268 (406)
T PRK15402 216 RFVAGALALGLVSLPLLAWIALSPVILISG-----EQLSSYEYGLLQVPVFGALIAGN 268 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHH
Confidence 888877777666666666666778776654 68888888887666555554433
No 38
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.92 E-value=1.3e-23 Score=191.27 Aligned_cols=261 Identities=16% Similarity=0.251 Sum_probs=195.5
Q ss_pred chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
+++.++.+.....+..+..+...|.+|.+.+++|.++.+ .+++.+.+.++..+++++.|+++||+|||+++.++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~ 79 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGA------VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVG 79 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHH
Confidence 345555555566666677778888999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727 119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 197 (351)
.++..++.+++...++++.+++.|++.|++.+...+. ..+..|.+++++|+++.+..+.+..+|..++|.+++.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-- 157 (394)
T PRK11652 80 MSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT-- 157 (394)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 9999999988888999999999999999987776664 7788999999999999999999999999999999999887
Q ss_pred CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccc
Q 018727 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK 276 (351)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
..+|+.++.+.++..++. .+..++.||+++.+.++ ++ ....++
T Consensus 158 --------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------------------~~~~~~ 201 (394)
T PRK11652 158 --------------LFGWRACYLFLLLLGAGVTFSMARWMPETRPADARR----TR------------------VLASYR 201 (394)
T ss_pred --------------ccChHHHHHHHHHHHHHHHHHHHHhCCccCccccch----hH------------------HHHHHH
Confidence 445555556655544433 33445667754321110 00 011234
Q ss_pred ccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc-cccccc
Q 018727 277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP-FKIDYR 348 (351)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~-~~~~~r 348 (351)
..+++|.++..++..+........+....+.++.+. +|+++.+.+.+.....++.+++... .++.+|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 269 (394)
T PRK11652 202 TLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGAWFAGRPNKR 269 (394)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777655555555544555555666666654 7889999998887777777665443 455554
No 39
>PRK15075 citrate-proton symporter; Provisional
Probab=99.92 E-value=1.9e-23 Score=192.45 Aligned_cols=270 Identities=16% Similarity=0.119 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHH-HHH-----HHHHHHhhhhhhhhhhhhcChHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVG-SSF-----MFGRALTSVFWGLVADRYGRKPV 114 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~g~l~dr~Grr~~ 114 (351)
+....+++..+++.++...+++..|.+.++++.++.+ .+.+. +.. .++..+++++.|+++||+|||++
T Consensus 15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~ 88 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNE------FASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG 88 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH
Confidence 4455788899999999999999999999999988776 44332 222 23335788999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHH--------HHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHH
Q 018727 115 IIMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLII 185 (351)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 185 (351)
++.+.++..++.++++++++++ .+++.|+++|++.+...+ ...+++|++|+++|++++++.+...++|..+
T Consensus 89 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~ 168 (434)
T PRK15075 89 LIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF 168 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876 468899999999888666 4889999999999999999999888888888
Q ss_pred HHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhh
Q 018727 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVK 265 (351)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (351)
++.+++.+.....++ .. ..++||.++++..+...+..+.....||+++. . . ++ .
T Consensus 169 g~~~g~~l~~~~~~~-------~~-~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~--------~-~-~~-------~- 222 (434)
T PRK15075 169 AALLGYLLNQWLSPA-------QM-AEWGWRIPFLIGCLIVPFIFLIRRSLEETEEF--------L-A-RK-------H- 222 (434)
T ss_pred HHHHHHHHHHhCCHH-------HH-hccchHHHHHHHHHHHHHHHHHHHhcCCCHHH--------H-H-hh-------h-
Confidence 888877664211000 00 03456666665443322222222222221100 0 0 00 0
Q ss_pred hhhhcccCcccccccccchHHH-HHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhc---
Q 018727 266 EEEGREATPKKSLLKNWPLMSS-IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHIL--- 341 (351)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~--- 341 (351)
+.+....+++..+++..+.. +...++..........+.|.|+++. +|++..+.+.+.....++.+++.+
T Consensus 223 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g 295 (434)
T PRK15075 223 --RPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-----LHLSAADSLLVTLCVGVSNFIWLPIGG 295 (434)
T ss_pred --ccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001112223344443332 2333334444556677788888765 688888888877776666655433
Q ss_pred --cccccccc
Q 018727 342 --PFKIDYRF 349 (351)
Q Consensus 342 --~~~~~~r~ 349 (351)
..|+++|+
T Consensus 296 ~l~Dr~g~r~ 305 (434)
T PRK15075 296 ALSDRIGRRP 305 (434)
T ss_pred HHHHHhcchH
Confidence 33666654
No 40
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.92 E-value=6e-24 Score=184.35 Aligned_cols=260 Identities=14% Similarity=0.131 Sum_probs=210.1
Q ss_pred CchHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (351)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 117 (351)
...+.++..++......+......+..+.+.+++++|+.| .+++.++..+...+..++.|.+.||+|.|++..+
T Consensus 11 ~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q------~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~ 84 (417)
T COG2223 11 IARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQ------KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTIL 84 (417)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHH------HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHH
Confidence 3446666667777777778888888889999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhh---hHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727 118 GTASVVIFNTLFGLSV---NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (351)
+.++..+-++..+++. +++++++++++.|++.+.+.+...+++++||+|++|.++|++. ++++|..+..+++..+.
T Consensus 85 s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~ 163 (417)
T COG2223 85 SMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA 163 (417)
T ss_pred HHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH
Confidence 9999999888888764 4569999999999999999888999999999999999999999 88999988888888777
Q ss_pred CCCCCCCCcccccccccCccchhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccC
Q 018727 195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT 273 (351)
Q Consensus 195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (351)
. ..|+. .|+....+..+..++ .++.++.+.+.++.+...++. .+.
T Consensus 164 ~-------~~g~~------~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~---------------------~~~ 209 (417)
T COG2223 164 V-------AFGFL------AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQ---------------------LPA 209 (417)
T ss_pred H-------HHhhH------HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccc---------------------chh
Confidence 6 23310 145444444444444 344455555555432221110 003
Q ss_pred cccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
..+.++++++.|.+.+.|+..+....++..++|.|+.+. ++.++..+|.......+...+.+..+
T Consensus 210 ~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~-----fg~~~~~Ag~~a~~f~~~g~l~Rp~G 274 (417)
T COG2223 210 QLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ-----FGLSPVTAGLIAFLFPLIGALARPLG 274 (417)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhHHHHHHHHHHHHHHHHhcc
Confidence 456678899999999999999999999999999999998 99999999999888888888877665
No 41
>PRK11043 putative transporter; Provisional
Probab=99.92 E-value=2.4e-23 Score=190.01 Aligned_cols=245 Identities=17% Similarity=0.207 Sum_probs=186.5
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
.+.....+..+..+.+.|.+|.+.+++|.++.+ .+++.+++.++..++++++|+++||+|||+++..+.++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 83 (401)
T PRK11043 10 YLAGLSMLGFLATDMYLPAFKAIQADLQTSASA------VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFAL 83 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHH
Confidence 334345555567778888889999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCc
Q 018727 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL 203 (351)
Q Consensus 125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 203 (351)
+.+++.++++++.+++.|++.|++.+...+. .+++.|++|++++++..+..+....+|..++|.+++.+.+
T Consensus 84 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-------- 155 (401)
T PRK11043 84 GSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN-------- 155 (401)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 9988889999999999999999987766654 7889999999999999999888899999999999999987
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccc
Q 018727 204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283 (351)
Q Consensus 204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (351)
..+|+..+.+..+..++..+..++++|++++++ + ++ ....+++++|+|.
T Consensus 156 --------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~------------------~~~~~~~~~~~~~ 204 (401)
T PRK11043 156 --------HFGWQAIFATLFAITLLLILPTLRLKPSKKARK---Q--SQ------------------DALTFKQLLKSKT 204 (401)
T ss_pred --------cCChHHHHHHHHHHHHHHHHHHHHcCCCCCccc---c--ch------------------HHHHHHHHHcChh
Confidence 445555556666665555555555555432110 0 00 0113455677777
Q ss_pred hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI 340 (351)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~ 340 (351)
++...+...+.......+..+.|.++++ +|+++.++|.......++.+++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~g~~~~~~~~~~~~g~ 255 (401)
T PRK11043 205 YLGNVLIFAACSAAFFAWLTGSPFILEQ------MGYSPADIGLSYVPQTIAFLVGG 255 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH
Confidence 7765555555555556667777877654 68899888887766655555543
No 42
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.92 E-value=1.1e-23 Score=196.23 Aligned_cols=173 Identities=24% Similarity=0.280 Sum_probs=142.2
Q ss_pred HHHHHHhhccccchhhhHHHHHHhhccc--------ccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 47 WIIVLCTALPISSLFPFLYFMIKDFQIA--------KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
.+..++..++...+.+..+.+..+++.+ ..+ .+++.+++.++..+++++.|+++||+|||+++.++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~ 107 (481)
T TIGR00879 34 AIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSL------WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLII 107 (481)
T ss_pred HHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhH------HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHH
Confidence 3344556667777888888888887777 455 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh---hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh---h
Q 018727 119 TASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG---G 191 (351)
Q Consensus 119 ~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~ 191 (351)
.++..++.+++.+. .+++.+++.|++.|++.+...+. ..+++|++|+++|++++++.+.+..+|..+++.++ .
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~ 187 (481)
T TIGR00879 108 ALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV 187 (481)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999888887543 34568999999999998887775 89999999999999999999999999999999998 5
Q ss_pred hhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccc
Q 018727 192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH 241 (351)
Q Consensus 192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 241 (351)
...+ ..+|+.++.+.++..++.++..+++||+++
T Consensus 188 ~~~~----------------~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~ 221 (481)
T TIGR00879 188 SLNN----------------TLGWRIPLGLQLIPAGLLFLGLFFLPESPR 221 (481)
T ss_pred cCCC----------------CccHHHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 4444 445666667766666666666777888764
No 43
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.91 E-value=3.3e-23 Score=188.55 Aligned_cols=250 Identities=21% Similarity=0.217 Sum_probs=184.9
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
......+....+.....+.+|.+.+++|.+..+ .++..+.+.++..+++++.|+++||+|||+++..+.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i 80 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQ------LHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFII 80 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHH
Confidence 344455555666667778899999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCc
Q 018727 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL 203 (351)
Q Consensus 125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 203 (351)
+..++..+++.+.+++.|++.|++.+...+ ...++.|.+|+++|+++.++.+....+|..++|.+++.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~-------- 152 (392)
T PRK10473 81 ASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML-------- 152 (392)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 999888899999999999999998877666 48999999999999999999999999999999999988876
Q ss_pred ccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccccccc
Q 018727 204 FSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW 282 (351)
Q Consensus 204 ~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (351)
..+|+..+.+.++..++. ++..+.+||+++++.+++ ... .+..++.++++
T Consensus 153 --------~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~------------------~~~~~~~~~~~ 203 (392)
T PRK10473 153 --------KFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAA---SSK------------------PRENSESLLNR 203 (392)
T ss_pred --------CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCc---cch------------------HHHHHHHHhCH
Confidence 344555555655544443 334555677543221100 000 00122346677
Q ss_pred chHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727 283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP 342 (351)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~ 342 (351)
.++...+...+.......+..+.|.++.+. +|+++.+.+.+....+++.+++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~i~~~~~ 258 (392)
T PRK10473 204 FFLSRLVITTLSVTVILTFVNTSPVLLMEQ-----MGFSRGEYAIIMALTAGVSMTVSFS 258 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666554444444444444555556665544 7889999998888877777665543
No 44
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.91 E-value=6.6e-23 Score=191.47 Aligned_cols=188 Identities=15% Similarity=0.099 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhh--------cccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcCh
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDF--------QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK 112 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr 112 (351)
+..+...+..+..+++...+++..|.+.+++ +.+..+ .+++.+++.++.+++++++|+++||+|||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~s~~~ig~~~~~~~~G~l~dr~Grr 85 (479)
T PRK10077 12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSL------LGFCVASALIGCIIGGALGGYCSNRFGRR 85 (479)
T ss_pred HHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 4445666777888889999999889888877 666666 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh------------hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHH
Q 018727 113 PVIIMGTASVVIFNTLFGLS------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAW 179 (351)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~ 179 (351)
++++++.++..++.+.++++ +.+..+++.|+++|++.|...+. .++++|++|+++|++++++.+.+.
T Consensus 86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 165 (479)
T PRK10077 86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI 165 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence 99999999988887766652 23567889999999998887774 999999999999999999999999
Q ss_pred HhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcccccccc
Q 018727 180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR 242 (351)
Q Consensus 180 ~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 242 (351)
.+|.++++.+++.+....... ....++||.++.+.++..++..+..+++||++++
T Consensus 166 ~~G~~~~~~~~~~~~~~~~~~--------~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~ 220 (479)
T PRK10077 166 IFGQLVVYFVNYFIARSGDAS--------WLNTDGWRYMFASEAIPALLFLMLLYFVPETPRY 220 (479)
T ss_pred HHHHHHHHHHHHHHhccCccc--------ccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 999999988877665311100 0014566777777777666666667788998754
No 45
>PRK09952 shikimate transporter; Provisional
Probab=99.91 E-value=5.4e-23 Score=189.46 Aligned_cols=277 Identities=16% Similarity=0.135 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHH-HHHhh--cccccccchhhh-hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDF--QIAKREEDIGSY-AGYVGSSFMFGRALTSVFWGLVADRYGRKPVII 116 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~ 116 (351)
+.+...++..+++.++...+....|. +.+++ +.++.. +.. .....++..++..+++++.|+++||+|||+++.
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~ 98 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence 44556667888888888887777764 44554 454432 111 111223455677899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHH--------HHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHH
Q 018727 117 MGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGP 187 (351)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 187 (351)
.+.++++++.+++++++++. .+++.|+++|++.|...+ ...+++|++|+++|++..+..+.+..+|..+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~ 178 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST 178 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876 588899999999888766 489999999999999999999999999999988
Q ss_pred HhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhh
Q 018727 188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE 267 (351)
Q Consensus 188 ~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (351)
.+...+......+ .+..++||.++++.++..++........||++++...+.+. ++
T Consensus 179 ~~~~~l~~~~~~~--------~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~-------------~~--- 234 (438)
T PRK09952 179 GLVSLISMMTTDE--------QFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQ-------------AA--- 234 (438)
T ss_pred HHHHHHHHhCCHH--------HhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhc-------------cc---
Confidence 7776654311100 01145677777777666554444444456654321110000 00
Q ss_pred hhcccCcccccccccchHHHHH-HHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh-----hhc
Q 018727 268 EGREATPKKSLLKNWPLMSSII-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT-----HIL 341 (351)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~-----~~~ 341 (351)
.+......+.++++|+.+.... ..++..........+.+.|+.+. +|++......+....++..++ +.+
T Consensus 235 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-----~g~s~~~~~~~~~~~g~~~~i~~~~~g~l 309 (438)
T PRK09952 235 AKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQN-----LGLPRELFLNIGLLVGGLSCLTIPCFAWL 309 (438)
T ss_pred ccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011123456666555433 33444445555667788787665 677766444333333333322 445
Q ss_pred cccccccc
Q 018727 342 PFKIDYRF 349 (351)
Q Consensus 342 ~~~~~~r~ 349 (351)
..|+++|+
T Consensus 310 ~Dr~grr~ 317 (438)
T PRK09952 310 ADRFGRRR 317 (438)
T ss_pred HHHhCchH
Confidence 55777765
No 46
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.91 E-value=1.3e-23 Score=190.25 Aligned_cols=244 Identities=20% Similarity=0.274 Sum_probs=186.4
Q ss_pred ccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhh
Q 018727 55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN 134 (351)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
+......|.+|.+.+++|.++.+ .+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++...++
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~ 78 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGS------VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT 78 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence 34456678999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCc
Q 018727 135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF 213 (351)
Q Consensus 135 ~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~ 213 (351)
++.+++.|++.|++.+...+. ..++.|++|+++|++++++.+....+|..++|.+++.+.+ .+
T Consensus 79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----------------~~ 142 (377)
T PRK11102 79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV----------------WF 142 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------Hc
Confidence 999999999999988777664 8899999999999999999999999999999999999987 44
Q ss_pred cchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHH
Q 018727 214 PYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC 292 (351)
Q Consensus 214 ~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (351)
+|+.++.+.++..++. ++..+++||+++.+++++. +.+ +.....++.++++.++..++..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 204 (377)
T PRK11102 143 SWHAIFWVLALAAILAAALVFFFIPETLPKERRQPF--HLR----------------TTIRNFASLFRHKRVLGYMLASG 204 (377)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCC--ChH----------------HHHHHHHHHHcChHHHHHHHHHH
Confidence 5555556655555444 3344566765432211100 000 00112345677888777666665
Q ss_pred HHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 293 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
+.......+..+.|.++.+. +|+++.+.|.+.....++.+++++..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~ 250 (377)
T PRK11102 205 FSFAGMFSFLTAGPFVYIEL-----NGVSPQNFGYYFALNIVFLFVMTIIN 250 (377)
T ss_pred HHHHHHHHHHHcCHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555556555554 68899999999998888776655443
No 47
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.91 E-value=1.2e-23 Score=194.64 Aligned_cols=263 Identities=11% Similarity=0.024 Sum_probs=180.1
Q ss_pred HHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHH
Q 018727 48 IIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT 127 (351)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 127 (351)
+.............+.+|++.++ |++..+ .+++.+...++..+++++.|+++||+|||+++.++.++.+++.+
T Consensus 36 ~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~------~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~ 108 (452)
T PRK11273 36 FGYAAYYLVRKNFALAMPYLVEQ-GFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 108 (452)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHc-CCCHHH------HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHH
Confidence 33334444444456677888877 999999 99999999999999999999999999999999999999988888
Q ss_pred Hhhhh----hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHH-HHHHhhhhhcCCCCCCC
Q 018727 128 LFGLS----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGFLAQPAEKYP 201 (351)
Q Consensus 128 ~~~~~----~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~ 201 (351)
++++. .+++.+++.|++.|++.+...+ ....+.|++|+++|++++++++.+..+|.. .+|+++..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~------ 182 (452)
T PRK11273 109 FMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW------ 182 (452)
T ss_pred HHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH------
Confidence 77765 3678889999999998777665 477889999999999999999999998874 45554433332
Q ss_pred CcccccccccCccchhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCc-ccccc
Q 018727 202 NLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-KKSLL 279 (351)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 279 (351)
..+|+..+++.++..++ .++..+++||+++....++++ +.. ++.++...+.++.+.+.... ...++
T Consensus 183 ----------~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (452)
T PRK11273 183 ----------FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIE-EYK-NDYPDDYNEKHEQELTAKQIFMQYVL 250 (452)
T ss_pred ----------hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChh-hhh-hccccccccccCCCccHHHHHHHHHH
Confidence 22455555665554444 345566678766532111110 000 00000000000000000001 12367
Q ss_pred cccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727 280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI 340 (351)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~ 340 (351)
|++.+|...+..++.+........++|.|+++. .|++..+++.......++.+++.
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~ 306 (452)
T PRK11273 251 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGT 306 (452)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 889999888888887777778888999999876 68888888887777666655543
No 48
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.91 E-value=7.4e-23 Score=189.33 Aligned_cols=275 Identities=14% Similarity=0.072 Sum_probs=188.8
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
|..+..+.+...........+....|.+.+++|.+.++ .+++.+.+.++..++.++.|+++||+|||++++.+.
T Consensus 18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 91 (455)
T TIGR00892 18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSE------TAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG 91 (455)
T ss_pred hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhH------HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence 33333444444433334455677889999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHH-HHHHhhhhcccch-hHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727 120 ASVVIFNTLFGLSVNFWMAVL-TRFLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 197 (351)
++..++.++++++++++.+++ .|++.|++.+... +...++.++++ ++|+++.++.+.+..+|..++|.+++.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~-- 168 (455)
T TIGR00892 92 LLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE-- 168 (455)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH--
Confidence 999999999889999888765 4689999877653 45778889986 789999999999999999999999999987
Q ss_pred CCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcc-ccccccCCCCCcc-chhhHHHhhhhhhhhhhhhhcccCcc
Q 018727 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDS-CDVSYDALESASAEVKEEEGREATPK 275 (351)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (351)
.++|+.++.+.+++.++..+..+++ ++.+.+...+.++ .....+...+........+...+...
T Consensus 169 --------------~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (455)
T TIGR00892 169 --------------SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLD 234 (455)
T ss_pred --------------HhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcc
Confidence 4455555566666555443333333 3221110000000 00000000000000000000011112
Q ss_pred cccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 276 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
.+++++|+++..++..++..........+++.|..+ .|++..+++.++++.+++.+++++..
T Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~~~ 296 (455)
T TIGR00892 235 FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD------KGVDEYEAAFLLSIIGFVDIFARPSC 296 (455)
T ss_pred hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788988887777777777767777788888765 68899999999999998888765443
No 49
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.91 E-value=8.2e-23 Score=186.41 Aligned_cols=258 Identities=12% Similarity=0.113 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
+.+...+++.++.....+...++++.+.+++|.++.+ .+++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~ 86 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQ------SASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLL 86 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHH------hHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 4455666666666677666777787788899999999 9999999999999999999999999999999999998
Q ss_pred HHHHHHHHhh---h-hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHH-HHHHHhhhhhc
Q 018727 121 SVVIFNTLFG---L-SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGL-IIGPALGGFLA 194 (351)
Q Consensus 121 ~~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~ 194 (351)
+.+++.+++. . .++++.+++.|++.|++.+...+ ....+.+.+|+++|++++|+.+.+.++|. .++|.+++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 87 LWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888765442 3 35788888999999998766555 47788899999999999999999999997 68999998888
Q ss_pred CCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCc
Q 018727 195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP 274 (351)
Q Consensus 195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (351)
+ .+||+..+ |+..+.. .+..++..+..++.++....+++ + + ..+..+.
T Consensus 167 ~-------~~g~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~-~--------------~~~~~~~ 214 (402)
T TIGR00897 167 P-------AFGEMNTL----WSALAFV----LTGGVIALFSNKDIFTPQHMQTR--E-K--------------FSELGKA 214 (402)
T ss_pred c-------ccchHHHH----HHHHHHH----HHHHHHHHhccCCCCCcccccCC--c-c--------------hhhHHHH
Confidence 7 34433221 2222211 11122223333432211100000 0 0 0000112
Q ss_pred ccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727 275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP 342 (351)
Q Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~ 342 (351)
+++++|+|.++...+..++.......+.++.|.|+++ +|+++.+.+.+.+...++..++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~ig~~~ 276 (402)
T TIGR00897 215 ATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE------LGFSTSEWLQIWGTFFFTNIVFNVI 276 (402)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCChhHHHHHHHHHHHHHHHHHHH
Confidence 3467889999888777777777778888889988765 6888888888888777776665444
No 50
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.91 E-value=2.7e-23 Score=194.90 Aligned_cols=204 Identities=16% Similarity=0.121 Sum_probs=153.9
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
++.+..+.+..+..+++....+...|.+..++..++. ...+...+++.+...++..++++++|+++||+|||+++.++.
T Consensus 15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~ 93 (502)
T TIGR00887 15 FRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKG-PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL 93 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3444466777888888888888888877664311110 001122789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhh------HHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727 120 ASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 192 (351)
++..++.++++++++ ++.+++.|++.|++.|...+ .+.+++|++|+++|++++++.+....+|..+++.++..
T Consensus 94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~ 173 (502)
T TIGR00887 94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI 173 (502)
T ss_pred HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888877654 78899999999999888766 59999999999999999999999999999999988876
Q ss_pred hcCCCCC-CCCcc-----ccccc-ccCccchhHHHHHHHHHHHHHHHHhccccccccCC
Q 018727 193 LAQPAEK-YPNLF-----SSESL-FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244 (351)
Q Consensus 193 l~~~~~~-~~~~~-----gw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 244 (351)
+...... ..... .++.. ...++||.++.+.++..++.++..+++||+|++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~ 232 (502)
T TIGR00887 174 VLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTA 232 (502)
T ss_pred HHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5431110 00000 00000 11357888888888877777777889999998743
No 51
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.91 E-value=1.7e-23 Score=200.20 Aligned_cols=188 Identities=19% Similarity=0.243 Sum_probs=162.4
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHH
Q 018727 44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV 123 (351)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 123 (351)
+.+.++.+..++....+...+|.+.++++++..+ .+++.+++.++.+++++++|+++||+|||+++++++++.+
T Consensus 170 ~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~------~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~ 243 (742)
T TIGR01299 170 FVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSG------KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNG 243 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3455556666677777888899999999999988 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCC
Q 018727 124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202 (351)
Q Consensus 124 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 202 (351)
++.++++++++++.++++|++.|++.|...++ .++++|++|+++|++.+++++.++.+|.++++.++..+..
T Consensus 244 i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~------- 316 (742)
T TIGR01299 244 FFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP------- 316 (742)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 99999999999999999999999998776664 9999999999999999999999999999999999887775
Q ss_pred ccccccc----ccCccchhHHHHHHHHHHHHHHHHhccccccccCC
Q 018727 203 LFSSESL----FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244 (351)
Q Consensus 203 ~~gw~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 244 (351)
.+||+.. +...+||..+++.++..++.++..+++||+|++..
T Consensus 317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~ 362 (742)
T TIGR01299 317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFL 362 (742)
T ss_pred hccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 5566432 22457888888888887777778889999998743
No 52
>TIGR00895 2A0115 benzoate transport.
Probab=99.91 E-value=5.6e-23 Score=187.02 Aligned_cols=275 Identities=18% Similarity=0.230 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
+.+.......+...+......+..|.+.+++|.+..+ .+++.+...++..++.++.|+++||+|||+++..+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 90 (398)
T TIGR00895 17 RAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQ------LGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSIL 90 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHH------HHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence 3444555566666677777788889999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 199 (351)
+..++.++....++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++|.+++.+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---- 166 (398)
T TIGR00895 91 LFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP---- 166 (398)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh----
Confidence 99999988888999999999999999998877664 9999999999999999999999999999999999999987
Q ss_pred CCCcccccccccCccchhHHHHHH-HHHHHHHHHHhccccccccCCCCCccc-hhhHHHhhhhhhhh-----hhhhh--c
Q 018727 200 YPNLFSSESLFGKFPYFLPCLCIS-LFAFGVTIAAFWLPETLHRHNDDDDSC-DVSYDALESASAEV-----KEEEG--R 270 (351)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~--~ 270 (351)
..||+..+ .+.+ +..+...+...++||+++....++++. .+..++......++ ++++. +
T Consensus 167 ---~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (398)
T TIGR00895 167 ---VFGWRSLF---------YVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQG 234 (398)
T ss_pred ---cccceeeh---------hhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccc
Confidence 44555444 4443 333334445566777654322211111 00001100000000 00000 0
Q ss_pred ccCc-ccccccc---cchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 271 EATP-KKSLLKN---WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 271 ~~~~-~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
.... .+.++++ +..+...+..++..........+.|.+..+ .++++.+++.+.+...++.+++.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~ 305 (398)
T TIGR00895 235 TKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE------LGFSLSLAATGGALFNFGGVIGSIIF 305 (398)
T ss_pred hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 1112222 222333344444445555556666744443 68888899988888887777655443
No 53
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.91 E-value=3.1e-23 Score=189.09 Aligned_cols=244 Identities=16% Similarity=0.239 Sum_probs=195.4
Q ss_pred hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHhhh
Q 018727 70 DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGS 147 (351)
Q Consensus 70 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~ 147 (351)
+++++..+ .+++.+.+..|+.+++++.|++.||+|-|+++..+.++.+++.++...+. +++.+++.|+++|+
T Consensus 67 ~~~ws~~~------k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl 140 (466)
T KOG2532|consen 67 EYDWSSTE------KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGL 140 (466)
T ss_pred eecCCHHH------HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHH
Confidence 56667777 99999999999999999999999999999999999999999999988764 45678999999999
Q ss_pred hcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHH
Q 018727 148 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA 226 (351)
Q Consensus 148 ~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 226 (351)
+.|...|+ ..+.+.|.|++||++..++...+..+|.+++-+++|++.+ . ..||+.++++.++.+
T Consensus 141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~-------s--------~~GW~sifY~~g~~g 205 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE-------S--------SLGWPSIFYVFGIVG 205 (466)
T ss_pred HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-------c--------CCCCchHHHHHHHHH
Confidence 99987775 9999999999999999999999999999999999999998 2 144555557877777
Q ss_pred HHHHHHHhc-cccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHH
Q 018727 227 FGVTIAAFW-LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF 305 (351)
Q Consensus 227 ~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (351)
++..++++. ..|+|.+++.-. +++++.+++...+.+. +.+...+++++++++.+|...+..+..+.....+..+.
T Consensus 206 ~i~~~~w~~~~~d~P~~h~~is---~~El~~I~~~k~~~~~-~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~ 281 (466)
T KOG2532|consen 206 LIWFILWFLFYSDSPSKHPNIS---EKELKYIEKGKSEAHV-KKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYL 281 (466)
T ss_pred HHHHHHHHHHhcCCcccCCCCC---HHHHHHHHhccccccc-CCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 776555444 445544422211 1111222222221111 11156789999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 306 SLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 306 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
|.|+.+. +|++..+.|++.++..+...+..+..
T Consensus 282 PtY~~~V-----L~f~v~~~G~~salP~l~~~~~k~~~ 314 (466)
T KOG2532|consen 282 PTYLKEV-----LGFDVRETGFLSALPFLAMAIVKFVA 314 (466)
T ss_pred hHHHHHH-----hCCChhhhhHHHHHHHHHHHHHHHHH
Confidence 9999998 99999999999999888887755443
No 54
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.91 E-value=1.6e-22 Score=189.71 Aligned_cols=181 Identities=14% Similarity=0.199 Sum_probs=152.6
Q ss_pred chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
.++.+..+++..++..++.....+.+|.+.+++|.+..+ .+++.+.+.+++.++.++.|+++||+|||+++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 91 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQ------AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVIS 91 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 345566778888888888888999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727 119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 197 (351)
.++.+++.++.++.++++.+++.|++.|++.+...+ ...++.|.+|+++|++++++...+..+|..++|.+.+.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-- 169 (496)
T PRK03893 92 IVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP-- 169 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 999999999999999999999999999998777655 48899999999999999999999999999999999999987
Q ss_pred CCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccc
Q 018727 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH 241 (351)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 241 (351)
.++|+..+.+..+..++.++.....||+++
T Consensus 170 --------------~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~ 199 (496)
T PRK03893 170 --------------VWGWRALFFIGILPIIFALWLRKNLPEAED 199 (496)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 344455445544433333344445666543
No 55
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.91 E-value=1.4e-22 Score=184.72 Aligned_cols=278 Identities=12% Similarity=0.042 Sum_probs=193.9
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 122 (351)
+..++...+..++..+...+.+|.+.+++|.+..+ .+++.+.+.+++.+++++.|++.||+|||+++.++.++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~------~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~ 78 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQ------AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLY 78 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 45666777777888888899999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh---hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727 123 VIFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (351)
Q Consensus 123 ~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 198 (351)
+++.+++.. .++++.+++.|++.|+|.|...+. +.++.++.|+++|++.+++.+...++|..++|.+++.+.....
T Consensus 79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~ 158 (410)
T TIGR00885 79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNL 158 (410)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 998877543 458899999999999998887774 8899999999999999999999999999999999988864210
Q ss_pred CC-CCccccccc---------ccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhh
Q 018727 199 KY-PNLFSSESL---------FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE 268 (351)
Q Consensus 199 ~~-~~~~gw~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (351)
.. ....-+... -...+|+.++.+.+++.++..+...+.+.++.++ + +++ +
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-~-~~~------------------~ 218 (410)
T TIGR00885 159 PHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-S-DAK------------------Q 218 (410)
T ss_pred ccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-c-ccc------------------c
Confidence 00 000000000 0013477777776665555443333322211110 0 000 0
Q ss_pred hcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc-----c
Q 018727 269 GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP-----F 343 (351)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~-----~ 343 (351)
.......++++|+|.++..++..+++.....+..++++.|..+.. .+.+....+...+....+..++++. .
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~----~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~ 294 (410)
T TIGR00885 219 ISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLI----PGMTAGFAANYNIGAMVIFFISRFIGTWLIS 294 (410)
T ss_pred ccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001112345678888888888888888888888888898876421 2344444444444433344444444 3
Q ss_pred ccccccc
Q 018727 344 KIDYRFF 350 (351)
Q Consensus 344 ~~~~r~~ 350 (351)
|+++|++
T Consensus 295 r~~~~~~ 301 (410)
T TIGR00885 295 YLAAHKV 301 (410)
T ss_pred HcCHHHH
Confidence 6666653
No 56
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.91 E-value=3.5e-23 Score=190.91 Aligned_cols=273 Identities=14% Similarity=0.052 Sum_probs=187.8
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 122 (351)
++.+.+................|.+.+ +|.+..+ .+++.+++.++..+++++.|+++||+|||+++.++.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~ 101 (438)
T TIGR00712 29 FLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGE------LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS 101 (438)
T ss_pred HHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhH------hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence 334444555555555556666777765 5999999 999999999999999999999999999999999998888
Q ss_pred HHHHHHhhhh----hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727 123 VIFNTLFGLS----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (351)
Q Consensus 123 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 197 (351)
+++.++.+.. .+++.+.+.|++.|++.+...+ ....+.|++|+++|++++++.+.+..+|+.++|.+.+...+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~- 180 (438)
T TIGR00712 102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW- 180 (438)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 8888776653 4677788899999998877655 588889999999999999999999999999998887655431
Q ss_pred CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccc
Q 018727 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK 276 (351)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
..+|+..+++.++..++. ++..+++||+++....++.++. +.+..+...++.+.+.........
T Consensus 181 --------------~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 245 (438)
T TIGR00712 181 --------------FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEY-RNDYPDDYNEKAEQELTAKEIFMQ 245 (438)
T ss_pred --------------hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhc-ccccccccccccccccchHHHHHH
Confidence 234555556665555543 3455667776543211110000 000000000000000000000112
Q ss_pred ccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
.++|++.++...+..++.+....+...+.|.|+++. .|+++.+++.......+..+++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~~~ 307 (438)
T TIGR00712 246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTLLC 307 (438)
T ss_pred HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHc-----cCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 467888898887777777777778888999999875 68899989988887777766655443
No 57
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.90 E-value=3.4e-23 Score=189.21 Aligned_cols=260 Identities=16% Similarity=0.136 Sum_probs=201.5
Q ss_pred hhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 018727 62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLT 141 (351)
Q Consensus 62 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (351)
+.+..+.+|.+....+ .+.+.+++.++++++.+++|.+.||++..+.+....+++++..++....+|++.+++.
T Consensus 67 a~l~g~~edl~~~~~~------l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ial 140 (495)
T KOG2533|consen 67 ASLSGLKEDLKLVGNQ------LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIAL 140 (495)
T ss_pred HHHcCCccccchhhhh------hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3333455777777778 9999999999999999999999999999999988888888888778789999999999
Q ss_pred HHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHH
Q 018727 142 RFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220 (351)
Q Consensus 142 r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~ 220 (351)
|++.|+.++...|. ..+++.||.+++|++.++++.++.++|+++|.+++..+.+.. +.....|||+.| +
T Consensus 141 r~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~-~~~~~~gW~~~F---------i 210 (495)
T KOG2533|consen 141 RFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN-GSGGLAGWRWLF---------I 210 (495)
T ss_pred HHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc-CCCCcCCceeeh---------h
Confidence 99999998888885 899999999999999999999999999999999998876522 222256666665 6
Q ss_pred HHHHHHHH-HHHHHhccccccccCCCCCccc-hhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhH
Q 018727 221 CISLFAFG-VTIAAFWLPETLHRHNDDDDSC-DVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHD 298 (351)
Q Consensus 221 ~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 298 (351)
+-+++.++ .+++++++|+.|....-.++++ ....++.++.+.+..+++ .++..+++.+++|.+|...+..++.....
T Consensus 211 I~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~dp~vw~~~l~~~~~~lv~ 289 (495)
T KOG2533|consen 211 IEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENK-FKWKGFKEALKDPGVWPFSLCYFFLKLVN 289 (495)
T ss_pred HHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccc-cCHHHHHHHHhchhHHHHHHHHHHHhhcc
Confidence 65555554 5567888998887542222111 111122222222222112 45566788899999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 299 MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
.++.+++|.|+.+. .|++..++..+.....++++++.+..
T Consensus 290 ~~~~~~lpl~l~~~-----~~~s~~~a~~ls~~~~~~g~v~~i~a 329 (495)
T KOG2533|consen 290 YGFSYWLPLYLKSN-----GGYSELQANLLSTPYDVGGIVGLILA 329 (495)
T ss_pred ccHHHHHHHHHHcC-----CCcChHHhccccchHHhhhHHHHHHH
Confidence 99999999999883 67888888888888887777765544
No 58
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.89 E-value=7.7e-22 Score=178.16 Aligned_cols=268 Identities=21% Similarity=0.207 Sum_probs=184.6
Q ss_pred HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHH
Q 018727 68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---SVNFWMAVLTRFL 144 (351)
Q Consensus 68 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l 144 (351)
.+++|...++++.+...+.+.+++.+|.++|+++.|+++||+|||..+.++.++..++.++..+ .+++.+++++|++
T Consensus 46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i 125 (485)
T KOG0569|consen 46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI 125 (485)
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3456766666677888999999999999999999999999999999999988887777766654 5788999999999
Q ss_pred hhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHH
Q 018727 145 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223 (351)
Q Consensus 145 ~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 223 (351)
.|+..|..... +.++.|+.|++.||......+.+..+|..++..++..-.- |- .-.|.+.+....
T Consensus 126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~il---------Gt-----~~~W~~l~~~~~ 191 (485)
T KOG0569|consen 126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLL---------GT-----EDLWPYLLAFPL 191 (485)
T ss_pred HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhc---------CC-----CcchHHHHHHHH
Confidence 99998887775 9999999999999999999999999999999766532221 11 334677777888
Q ss_pred HHHHHHHHHHhccccccccCCC-CCccchhh--HHHh----------hhhhhhhhhh--hhcccCcccccccccchHHH-
Q 018727 224 LFAFGVTIAAFWLPETLHRHND-DDDSCDVS--YDAL----------ESASAEVKEE--EGREATPKKSLLKNWPLMSS- 287 (351)
Q Consensus 224 ~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~--~~~~----------~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~- 287 (351)
+.+++.++...++||+|++... +.+++++. .+.. +....+.+++ +.+...+.+++++++..+.-
T Consensus 192 i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~ 271 (485)
T KOG0569|consen 192 IPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPL 271 (485)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHH
Confidence 8888888899999999998544 22222221 1111 1111111111 11245567888998877664
Q ss_pred HHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhc-----cccccccccC
Q 018727 288 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHIL-----PFKIDYRFFL 351 (351)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~-----~~~~~~r~~l 351 (351)
.+...+...+++...+....|..+.+.. .|++..++-+.....++..++..+ +-|.+||.+|
T Consensus 272 ~i~~~v~~~qq~sGi~ai~~Yst~i~~~--aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLl 338 (485)
T KOG0569|consen 272 LIGIVVSFAQQFSGINAIFFYSTSIFKT--AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLL 338 (485)
T ss_pred HHHHHHHHHHHhcCcceeHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 2333333334444433333344433222 567777766666666655554443 3489998764
No 59
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.89 E-value=5.1e-22 Score=181.17 Aligned_cols=151 Identities=23% Similarity=0.215 Sum_probs=131.8
Q ss_pred chHHHHHHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727 39 PITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (351)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 117 (351)
.++.+..+.+..++..++.....+.+|. +.+++|.++.+ .+++.+++.+++.+++++.|+++||+|||+++..
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~ 86 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFL------AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVF 86 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH------HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHH
Confidence 3466777888888888888889999986 56789999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhh--------hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHH
Q 018727 118 GTASVVIFNTLFGLS--------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA 188 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 188 (351)
+.++.+++.+.+.++ .+++.+++.|+++|++.+...+. ..++.|++|+++|++++++.+.+..+|.+++|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 166 (399)
T PRK05122 87 GLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAP 166 (399)
T ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHH
Confidence 988887766554432 25668899999999998887765 788899999999999999999999999999999
Q ss_pred hhhhhcC
Q 018727 189 LGGFLAQ 195 (351)
Q Consensus 189 ~~~~l~~ 195 (351)
+++.+.+
T Consensus 167 l~~~l~~ 173 (399)
T PRK05122 167 LGVLLYH 173 (399)
T ss_pred HHHHHHH
Confidence 9999987
No 60
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.89 E-value=8.5e-22 Score=176.85 Aligned_cols=237 Identities=14% Similarity=0.059 Sum_probs=180.4
Q ss_pred cccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhH
Q 018727 56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135 (351)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
......+.+|.+.+++|.+..+ .+++.+++.++..++.++.|+++||+|||+++.++.++..++.+.+ ..++.
T Consensus 15 ~~~~~~~~lp~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~ 87 (355)
T TIGR00896 15 ALTSVGPLLPQIRSALGMSFSV------AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGT 87 (355)
T ss_pred ccccCcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccH
Confidence 4466788999999999999999 9999999999999999999999999999999999988888877776 67888
Q ss_pred HHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCcc
Q 018727 136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP 214 (351)
Q Consensus 136 ~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~ 214 (351)
+.+++.|++.|++.+...+. ..++.|++| ++|++++++.+....+|..+++.+++.+.+. .+ .+
T Consensus 88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~-------~~-------~~ 152 (355)
T TIGR00896 88 ALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQH-------SG-------GH 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hh-------hh
Confidence 99999999999987776554 778888886 5799999999999999999999999888761 11 12
Q ss_pred chhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHH
Q 018727 215 YFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF 294 (351)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 294 (351)
|+..+...++..++.. ..++|+.++++.+++ .......++++|+|.++...+..++.
T Consensus 153 w~~~f~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (355)
T TIGR00896 153 WQQALAWWALPALLAL--LAWIPQVRRRVAANQ---------------------TTTRLTPVRIWRSPLAWQVTVFFGLQ 209 (355)
T ss_pred HHHHHHHHHHHHHHHH--HHHhhhhccccCCCC---------------------CCCCCCCchhhcCHhHHHHHHHHHHH
Confidence 4554444443332222 233454432111100 00112355678888888777766666
Q ss_pred HhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 295 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
.........++|.|+++ .|+++.+.+.+.+...++.+++++..
T Consensus 210 ~~~~~~~~~~lp~~~~~------~g~~~~~~g~~~~~~~~~~i~~~~~~ 252 (355)
T TIGR00896 210 SGLYYSLIGWLPAILIS------HGASAATAGSLLALMQLAQAASALLI 252 (355)
T ss_pred HHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 67777778888988865 68899999999999998888877654
No 61
>PRK10054 putative transporter; Provisional
Probab=99.89 E-value=6.4e-22 Score=179.93 Aligned_cols=252 Identities=16% Similarity=0.210 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
|.++.+....++.....+...+++|. +.+++|.+..+ .+++.+.+.++..+++++.|+++||+|||+++.++.
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~ 80 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDL------IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHH
Confidence 34556666777778888888888865 55679999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 198 (351)
++.+++.++.++.++++.+++.|.+.|.+.+...++ ..+..|.+|+++|++++++.+...++|.+++|.+++.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~--- 157 (395)
T PRK10054 81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM--- 157 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 999898888889999998888898888776666664 8899999999999999999999999999999999998863
Q ss_pred CCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccc
Q 018727 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS 277 (351)
Q Consensus 199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (351)
.|| +.++...++..++.+ +..+++||+++.+++++ + + ....++
T Consensus 158 -----~g~---------~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~---~----------------~---~~~~~~ 201 (395)
T PRK10054 158 -----QSI---------NLPFWLAAICSAFPLVFIQIWVQRSEKAIATET---G----------------S---VWSPSV 201 (395)
T ss_pred -----hcc---------CcHHHHHHHHHHHHHHHHHHHHhccccccccch---h----------------h---hhhhhh
Confidence 233 444455555544443 33344555432211000 0 0 011256
Q ss_pred cccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727 278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI 340 (351)
Q Consensus 278 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~ 340 (351)
.+|+|.++...+..++..+....+..+.+.|.... .+.+.+....+.++...++.....+
T Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~ 261 (395)
T PRK10054 202 LLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV---ADSDFAEKVVAVVLPVNAAMVVSLQ 261 (395)
T ss_pred hccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh---cccchHHHHHHHHHHhhhhheeeeh
Confidence 78889988877777776666655656666665432 1256677778888887776555544
No 62
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.89 E-value=8.9e-22 Score=177.94 Aligned_cols=252 Identities=15% Similarity=0.153 Sum_probs=177.6
Q ss_pred HHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH-HHHHHHHH
Q 018727 48 IIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVIF 125 (351)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~~~ 125 (351)
+..++..+..+...|.+|. +.+++|.++.+ .+++.+++.+...+.+++.|.++||+||||.++. +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~ 77 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAM------IGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALA 77 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4466677777888888886 46789999999 9999999999999999999999999999887654 55566667
Q ss_pred HHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhh--HhHHHHHHHhHHHHHHHhhhhhcCCCCCCCC
Q 018727 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALG--LSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202 (351)
Q Consensus 126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 202 (351)
.++++.+++++.+++.|++.|.+.+...+. ..+..|+.|+++|+.. .+......++|..++|.+++.+.+
T Consensus 78 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~------- 150 (375)
T TIGR00899 78 CLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL------- 150 (375)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH-------
Confidence 777888899999999999888766666664 7788898887777754 577788889999999999999987
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHH-HHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccc
Q 018727 203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN 281 (351)
Q Consensus 203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (351)
..+|+.++.+.++..++..+ ..+.+||++++..++.+ ....++.+++
T Consensus 151 ---------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~ 198 (375)
T TIGR00899 151 ---------GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT-----------------------RLEVRGLLAS 198 (375)
T ss_pred ---------hcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC-----------------------cchhhhhhcC
Confidence 45566666776665555443 34457775432211100 0012234566
Q ss_pred cchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh-----hhccccccccc
Q 018727 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT-----HILPFKIDYRF 349 (351)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~-----~~~~~~~~~r~ 349 (351)
++++......++.......+...+|.|+.+. +|.++.+.+.+.+...+.... +.+..|+++|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 266 (375)
T TIGR00899 199 RDTRLLFVACTLMWGCNILYIINMPLLIIHE-----LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR 266 (375)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh
Confidence 7676655555554444445556677777654 688888888887766554433 33444666654
No 63
>TIGR00898 2A0119 cation transport protein.
Probab=99.89 E-value=2e-22 Score=189.41 Aligned_cols=258 Identities=16% Similarity=0.219 Sum_probs=176.4
Q ss_pred hhHHHHHHhhccc---ccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 018727 62 PFLYFMIKDFQIA---KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA 138 (351)
Q Consensus 62 ~~~~~~~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 138 (351)
+..+.+.+|++++ ..+ .+++.+++.++..+++++.|+++||+|||++++++.++..++.++.+++++++.+
T Consensus 110 ~~~~~i~~e~~l~c~~~~~------~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWK------VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF 183 (505)
T ss_pred cccccEEEEecceechHHH------HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 5667788899998 666 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchh
Q 018727 139 VLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL 217 (351)
Q Consensus 139 ~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~ 217 (351)
++.|++.|++.+...+ ...++.|++|+++|+.+.++.+.+..+|.+++|.+++.+.+ |+.
T Consensus 184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------------wr~ 244 (505)
T TIGR00898 184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-------------------WRW 244 (505)
T ss_pred HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------------HHH
Confidence 9999999999888666 49999999999999999999999999999999988765532 455
Q ss_pred HHHHHHHHHHHHHHHHhccccccccCCCCCccchhh--HHHhhhhh----------h--hhhhhhhcccCcccccccccc
Q 018727 218 PCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDALESAS----------A--EVKEEEGREATPKKSLLKNWP 283 (351)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~----------~--~~~~~~~~~~~~~~~~l~~~~ 283 (351)
.+.+.++..++..+..+++||++++...+.+.+++. .++..+.+ . +.++.+.......++++++|.
T Consensus 245 ~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 324 (505)
T TIGR00898 245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPN 324 (505)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChH
Confidence 566666666666666688999887543322222111 11110000 0 000001111235677888888
Q ss_pred hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh--hhcccccccccc
Q 018727 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT--HILPFKIDYRFF 350 (351)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~--~~~~~~~~~r~~ 350 (351)
++...+...+..+.........+.+... ++.+......+.++..+...+ +.+..|+++|..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~ 387 (505)
T TIGR00898 325 LRKTTLCLMMLWFTTAFSYYGLVLDLGN------LGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYT 387 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc------cCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 8776655544443333333233333222 455544444444433332221 334447777653
No 64
>PRK12382 putative transporter; Provisional
Probab=99.89 E-value=2.2e-21 Score=176.56 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
+.++.++...++..+..+...|.+|. +.+++|.+..+ .+++.+++.++..++++++|+++||+|||+++..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~------~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~ 88 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTM------VGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGM 88 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHH------HHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHH
Confidence 44555666667777777788888885 56789999999 999999999999999999999999999999999988
Q ss_pred HHHHHHHHHh---h-----hhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727 120 ASVVIFNTLF---G-----LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG 190 (351)
Q Consensus 120 ~~~~~~~~~~---~-----~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 190 (351)
+...++.+.+ + ..++++.+++.|+++|++.+...+. .+++.|++|+|+|++++++.+.+..+|..++|.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~ 168 (392)
T PRK12382 89 LACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLG 168 (392)
T ss_pred HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHH
Confidence 7766654322 1 1357889999999999998876664 78889999999999999999999999999999999
Q ss_pred hhhcC
Q 018727 191 GFLAQ 195 (351)
Q Consensus 191 ~~l~~ 195 (351)
+.+.+
T Consensus 169 ~~l~~ 173 (392)
T PRK12382 169 LLLHS 173 (392)
T ss_pred HHHHh
Confidence 99887
No 65
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.89 E-value=3.1e-21 Score=176.51 Aligned_cols=182 Identities=26% Similarity=0.434 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
+.+..+++..++..+..+...+.+|.+.+++|.+..+. ...+.+++.++..++..+++++.|+++||+|||+++..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 92 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence 44556677788888888888999999999999886541 11224888899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCC
Q 018727 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 200 (351)
+.+++.+++...++++.+++.|++.|++.+.......++.|.+|+++|+++.++.+....+|..++|.+++.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----- 167 (408)
T PRK09874 93 GMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD----- 167 (408)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 999988888888999999999999999766544457788899999999999999999999999999999999987
Q ss_pred CCcccccccccCccchhHHHHHHHHHHHHHH-HHhccccc
Q 018727 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPET 239 (351)
Q Consensus 201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~ 239 (351)
..+|+..+.+.++..++..+ ..+++||+
T Consensus 168 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 168 -----------SYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred -----------HhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34455555655555444333 34445554
No 66
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.89 E-value=1.7e-21 Score=177.36 Aligned_cols=242 Identities=19% Similarity=0.237 Sum_probs=178.5
Q ss_pred HHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV 123 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 123 (351)
.+....++.....+...+.++. +.+++|.+..+ .|++.+...+...+.+++.|+++||+|||+++..+.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~ 87 (400)
T PRK11646 14 FLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVM------VGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRA 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHH
Confidence 3445566666666777777764 56789999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCC
Q 018727 124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202 (351)
Q Consensus 124 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 202 (351)
++.+++...++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..+||.+++.+.+
T Consensus 88 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~------- 160 (400)
T PRK11646 88 AGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ------- 160 (400)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 99999989999999999999999988777765 8899999999999999999999999999999999998873
Q ss_pred cccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccc
Q 018727 203 LFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN 281 (351)
Q Consensus 203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (351)
++|+..+.+.++..++.. +..+..||.+.. +.+ + +....+++++++
T Consensus 161 ----------~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~---~~~--~------------------~~~~~~~~~~~~ 207 (400)
T PRK11646 161 ----------YDFRLVCATGAVLFVLAAAFNAWLLPAYKLS---TVR--T------------------PVREGMTRVLRD 207 (400)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHHHhCCccccc---ccc--h------------------hhHHHHHHHHcC
Confidence 234555555554444332 233444542110 000 0 001134556778
Q ss_pred cchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh
Q 018727 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT 338 (351)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~ 338 (351)
|.++...+..+...........++|.|.++. +.++.+++.+.+..++....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~~g~l~~~~~~~~~~ 258 (400)
T PRK11646 208 KRFVTYVLTLTGYYMLAVQVMLMLPIMVNDI------AGSPSAVKWMYAIEACLSLT 258 (400)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHhh------cCCchHHHHHHHHHHHHHHH
Confidence 8877655555444444444456678777663 44677888887777665544
No 67
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.88 E-value=2.9e-21 Score=175.01 Aligned_cols=249 Identities=16% Similarity=0.126 Sum_probs=177.4
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH-HHH
Q 018727 44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT-ASV 122 (351)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~-~~~ 122 (351)
..+.+..+...+......|++|.+.+++|.+..+ ++++.+++.+...++++++|.++||+||++...... ...
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~------ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 80 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEM------IGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALAS 80 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3455667777777788999999999999999999 999999999999999999999999999854332211 111
Q ss_pred HHH-HHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCC
Q 018727 123 VIF-NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200 (351)
Q Consensus 123 ~~~-~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 200 (351)
.+. ...+..+++++.+++.|++.|.+.+...+. .++..|. .++|++.+|......++|.+++|.+++.+.+
T Consensus 81 ~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~----- 153 (382)
T TIGR00902 81 AIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG----- 153 (382)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 111 123446788999999999998876665564 6665553 4778999999999999999999999999998
Q ss_pred CCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccccc
Q 018727 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK 280 (351)
Q Consensus 201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (351)
.+|| +..+.+..+..++.++.. .++|+++++.++++ + +.......++++|
T Consensus 154 --~~g~---------~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~l~ 203 (382)
T TIGR00902 154 --MFDE---------QNILAILTAGLAFMLIGF-LIKPTIPPKDAIPE--D----------------ESQGDSAFIALLK 203 (382)
T ss_pred --HcCh---------hHHHHHHHHHHHHHHHHH-HcCCCCCCCccccc--c----------------ccccchhHHHHHc
Confidence 4444 444455443322222222 33333211111000 0 0011123567889
Q ss_pred ccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhc
Q 018727 281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHIL 341 (351)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~ 341 (351)
+|+++...+..++.......+..+.+.|+++ .|.++.++|.+++...++.++...
T Consensus 204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~------~g~s~~~~g~l~~~~~~~~i~~~~ 258 (382)
T TIGR00902 204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA------AGISASATGLLWGIGVLAEIIIFA 258 (382)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHHH
Confidence 9999999888888888888999999999876 699999999998877777666443
No 68
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.88 E-value=4e-22 Score=182.83 Aligned_cols=253 Identities=14% Similarity=0.080 Sum_probs=184.2
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
.++...++..+......+.+|.+.++++.+..+ .+++.+...++..+++++.|+++||+|||+++..+.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~ 94 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQ------VGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGL 94 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHH
Confidence 344445556666677788889998898888888 99999999999999999999999999999999888777776
Q ss_pred HHHHhhh-----hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727 125 FNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (351)
Q Consensus 125 ~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 198 (351)
+.+..+. .++++.+++.|++.|++.+...+. .+++.|++|+++|+++.++.+...++|..+||.+++.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~--- 171 (417)
T PRK10489 95 GFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA--- 171 (417)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH---
Confidence 6554432 467888899999999987776664 8899999999999999999999999999999999999987
Q ss_pred CCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccc
Q 018727 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL 278 (351)
Q Consensus 199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (351)
..+|+..+.+.++..++..+..+.+|++++++.++++ . . + +....++.+
T Consensus 172 -------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~-~-~--------------~~~~~~~~~ 220 (417)
T PRK10489 172 -------------AGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPREH--P-L-R--------------SLLAGFRFL 220 (417)
T ss_pred -------------HHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccc--c-h-H--------------HHHHHHHHH
Confidence 3344444455555555555556667765432211100 0 0 0 001123445
Q ss_pred ccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
+++|.++...+..++... ......++|.|..+. +|+++...|.+.+..+++.+++.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~g~~ig~~~~ 279 (417)
T PRK10489 221 LASPVVGGIALLGGLLTM-ASAVRVLYPALADEV-----WQMGAAQIGLLYAAVPLGAALGALTS 279 (417)
T ss_pred HcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhc-----cCCChhHhHHHHHHHHHHHHHHHHHH
Confidence 677776665544444332 345667788888776 78899999999998888887766554
No 69
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.88 E-value=3.6e-21 Score=174.79 Aligned_cols=260 Identities=15% Similarity=0.111 Sum_probs=174.6
Q ss_pred HhhccccchhhhHHHHHHhhcc--cccccchhhhhHHHHH-----HHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 52 CTALPISSLFPFLYFMIKDFQI--AKREEDIGSYAGYVGS-----SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
.+.++.+......+.+.+++.. ++.+ .+...+ ...++..+++++.|+++||+|||+++..+.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 77 (394)
T TIGR00883 4 VEWFDFYLYGFAAVLVFHTFFPPSGDPL------VALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGI 77 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCChH------HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 3455556666666777776543 2333 333332 23344457899999999999999999999999999
Q ss_pred HHHHhhhhhhHH--------HHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 125 FNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 125 ~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+.+++++++++. .+++.|+++|++.+...+ ...+++|++|+++|++..+..+.+..+|.++++.++..+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~ 157 (394)
T TIGR00883 78 GTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY 157 (394)
T ss_pred HHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888764 478899999999877666 48999999999999999999999999999999988776643
Q ss_pred CCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcc
Q 018727 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK 275 (351)
Q Consensus 196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (351)
.. +.... ..++|+.++.+.++..++..+.....||+++.+.++++ +++...+.
T Consensus 158 ~~-------~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~ 210 (394)
T TIGR00883 158 LL-------GDDAL-LEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-------------------HKKKRGPI 210 (394)
T ss_pred hc-------CHHHh-hccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-------------------cccccCCH
Confidence 11 00000 14567777777665555554444455554322110000 00112234
Q ss_pred cccccccc--hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc-----cccccc
Q 018727 276 KSLLKNWP--LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP-----FKIDYR 348 (351)
Q Consensus 276 ~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~-----~~~~~r 348 (351)
++.+++++ ++......++..........+.|.|..+. +|.++.+.+.+.....+...++++. .|+++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 285 (394)
T TIGR00883 211 RETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT-----LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR 285 (394)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 45555554 56666666666666667777888888654 6888888888888777766655433 356655
Q ss_pred c
Q 018727 349 F 349 (351)
Q Consensus 349 ~ 349 (351)
+
T Consensus 286 ~ 286 (394)
T TIGR00883 286 P 286 (394)
T ss_pred H
Confidence 4
No 70
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.87 E-value=8.1e-21 Score=169.67 Aligned_cols=234 Identities=24% Similarity=0.423 Sum_probs=195.8
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
.+....+...+......+..|.+.+++|.+..+ .+++.+...++..+++++.|+++||+|||+.+.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~ 76 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQ------AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL 76 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHH
Confidence 345566777788888889999999999999888 99999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCc
Q 018727 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL 203 (351)
Q Consensus 125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 203 (351)
+.+.....++++.+++.|++.|++.+...+. ..++.|++|+|+|++.+++.+....+|..++|.+++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------- 148 (352)
T cd06174 77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE-------- 148 (352)
T ss_pred HHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 9999989999999999999999998887665 9999999999999999999999999999999999999987
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccc
Q 018727 204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283 (351)
Q Consensus 204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (351)
..+|+..+.+.++..++..+...+.+ |.
T Consensus 149 --------~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~ 176 (352)
T cd06174 149 --------SLGWRWLFLILAILGLLLALLLLFLL--------------------------------------------RL 176 (352)
T ss_pred --------HhhHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------HH
Confidence 44455555666665555544444433 45
Q ss_pred hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-----cccccc
Q 018727 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-----KIDYRF 349 (351)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-----~~~~r~ 349 (351)
++...+..++.......+..+.+.+..+. ++.+..+.+.+.....++..++.+.. |+++|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 242 (352)
T cd06174 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEV-----LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR 242 (352)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67777777788888888888999888775 58899999999998888887766553 555554
No 71
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.87 E-value=7.8e-21 Score=178.43 Aligned_cols=280 Identities=17% Similarity=0.155 Sum_probs=182.1
Q ss_pred ccchhhhHHHHHHhhcccccccchh-hhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhH
Q 018727 57 ISSLFPFLYFMIKDFQIAKREEDIG-SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135 (351)
Q Consensus 57 ~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
.....+....+.++...+....... .+.+++.+...++..+++++.|+++|++|||+.++++.++..++.+++++++|.
T Consensus 63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~ 142 (513)
T KOG0254|consen 63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW 142 (513)
T ss_pred cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3455555555555432211110000 125899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCcc
Q 018727 136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP 214 (351)
Q Consensus 136 ~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~ 214 (351)
++++++|++.|+|.|..... +.+++|..|++.||...+..+....+|..++..++....+ . .++
T Consensus 143 ~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~--------~-------~~~ 207 (513)
T KOG0254|consen 143 YQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK--------V-------YAG 207 (513)
T ss_pred HHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc--------C-------Ccc
Confidence 99999999999998887764 9999999999999999999999999999999555544432 0 146
Q ss_pred chhHHHHHHHHHHHHHHHHhccccccccCCCCCccchh--hHHHhhh------------hhhhh-hhhhhcccC-ccccc
Q 018727 215 YFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDV--SYDALES------------ASAEV-KEEEGREAT-PKKSL 278 (351)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~------------~~~~~-~~~~~~~~~-~~~~~ 278 (351)
||.++.+..+.+++..+..+++||+|++.....+..+. ....... ...+. .+....... .+.++
T Consensus 208 Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (513)
T KOG0254|consen 208 WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGEL 287 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHh
Confidence 77788888888888877788999999875443222221 1111111 00000 000001111 24444
Q ss_pred ccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhH-Hh-hhccccccccccC
Q 018727 279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKV-DT-HILPFKIDYRFFL 351 (351)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~-~~-~~~~~~~~~r~~l 351 (351)
+++......++...+..+++....+....|..+.+...+...+......+.+...+.. ++ ..++.|++||.+|
T Consensus 288 ~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ll 362 (513)
T KOG0254|consen 288 FSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLL 362 (513)
T ss_pred cCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 5433334455556666666655555555455444333333333244444444444333 33 3455688888753
No 72
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.87 E-value=9.1e-21 Score=171.83 Aligned_cols=241 Identities=15% Similarity=0.150 Sum_probs=172.4
Q ss_pred HHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcCh----HHHHHHHHHHHHH
Q 018727 50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK----PVIIMGTASVVIF 125 (351)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~~~ 125 (351)
.+....+.+.+.|++|.+.+++|.+..+ +|++.+++.++..++++++|.++||+||| +.+.+...+. .
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~------iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~ 84 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPET------IGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--A 84 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHH------HHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--H
Confidence 4444556678889999999999999999 99999999999999999999999999994 3333222221 2
Q ss_pred HHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcc
Q 018727 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF 204 (351)
Q Consensus 126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 204 (351)
.......++++.+++.|++.|++.+...+. .++..++ .++|+++++......++|.++||.+++.+.+
T Consensus 85 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~--------- 153 (382)
T PRK11128 85 VAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS--------- 153 (382)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH---------
Confidence 223344678999999999999987766664 6666665 4568888999999999999999999999998
Q ss_pred cccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccch
Q 018727 205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPL 284 (351)
Q Consensus 205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 284 (351)
.++|+.+++..++..++..+..+..||++++..+++ + ..+....+++++|+|.+
T Consensus 154 -------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~i~~~~~~ 207 (382)
T PRK11128 154 -------WFGEQAILWILTAGVASMLLGQLLRPTIMPQGESRQ---Q----------------ESAGWPAWKALLKEPTV 207 (382)
T ss_pred -------HcChhHHHHHHHHHHHHHHHHHHccCCCCCcccccc---c----------------cccccchHHHHHcChhH
Confidence 445555556555444444333444454322111000 0 00012346788899999
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhc
Q 018727 285 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHIL 341 (351)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~ 341 (351)
+..++..++.......+..+++.|+.+ .|+++.++|.+.+...+..++.++
T Consensus 208 ~~~~~~~~l~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~ 258 (382)
T PRK11128 208 WRFLLCVSLLQGSHAAYYGFSAIYWQA------AGYSASTIGYLWSLGVVAEVLIFA 258 (382)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHHH
Confidence 988887777777777788888888865 688999999998877777665543
No 73
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.3e-20 Score=162.65 Aligned_cols=271 Identities=16% Similarity=0.146 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (351)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 121 (351)
.+..+....++.++......+.+|.+.+.|+++..+ ++++..+++.++.+.+++.|++.+|+|+|+.++.++.+
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~------a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l 87 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFE------ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLL 87 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHH------HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHH
Confidence 344556666777788888899999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhh---hhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727 122 VVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (351)
Q Consensus 122 ~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 197 (351)
+++++.++. ...++..++++-++.|.|.+...+. +++++.+.+++.....+++.+...++|.+++|++++.+..+.
T Consensus 88 ~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~ 167 (422)
T COG0738 88 YAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSG 167 (422)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 999998874 5578889999999999999998885 999999999988899999999999999999999999888621
Q ss_pred ----CCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccC
Q 018727 198 ----EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT 273 (351)
Q Consensus 198 ----~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (351)
-+-+....|+... -..++.++...+...++..+.....+.+..+.. ++++ .++...
T Consensus 168 ~~~~~~~~~~~~~~~~~-~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~-~~~~------------------~~~~~~ 227 (422)
T COG0738 168 VALTMSAAQILAIKGAD-ASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA-APSL------------------GASGSA 227 (422)
T ss_pred hhhccCHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc-cccc------------------cccccc
Confidence 0000011122111 122455556555554444443333222111111 1100 001111
Q ss_pred cccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
...+++++|.++...+..+++........++++.|+.+. .|++..+.+...+....+.+++++.+
T Consensus 228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-----~g~~~~~aa~~~s~~~~~~~vGRFig 292 (422)
T COG0738 228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-----LGLNEQQAAYYLSFFWVGFMVGRFIG 292 (422)
T ss_pred hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999987 78999999999999999999998665
No 74
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.86 E-value=2.4e-20 Score=173.93 Aligned_cols=263 Identities=12% Similarity=0.153 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-----cChHH-
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV- 114 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~- 114 (351)
++...++...+..+.......+.+|.+.++.|.+..+ ++.+ +.....+ ++.+++|+++||+ |||+.
T Consensus 12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~------ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ 83 (491)
T PRK11010 12 PNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKT------IGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGW 83 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHH
Confidence 4456667777778888888889999999999999888 8875 3333333 6899999999999 99985
Q ss_pred HHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727 115 IIMGTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG 190 (351)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 190 (351)
+..+.++.+++..++++. ++++.+.+.+++.+++.+...+. .++..|++|+++|+++.++...+..+|.++++.++
T Consensus 84 ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~ 163 (491)
T PRK11010 84 LLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLA 163 (491)
T ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776776666554 46788888999999987776664 89999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhc
Q 018727 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR 270 (351)
Q Consensus 191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (351)
+.+.+ . .++|+.++++.++..++..+..++.||+++.... ++ +.. ..
T Consensus 164 ~~l~~-------~--------~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~--~~-~~~---------------~~ 210 (491)
T PRK11010 164 LWLAD-------R--------YLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPV--PK-TLE---------------QA 210 (491)
T ss_pred HHHHh-------c--------ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccc--cc-chh---------------hh
Confidence 88876 1 1356666677776666665555567776432110 00 000 00
Q ss_pred ccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHH-hhhHHhhhc-----ccc
Q 018727 271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAIT-GTKVDTHIL-----PFK 344 (351)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~-~~~~~~~~~-----~~~ 344 (351)
...++++.++++..+...+..+++.........+.+.|+.+. .|++..+++.+.... .++.+++.+ ..|
T Consensus 211 ~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~-----~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr 285 (491)
T PRK11010 211 VVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRG-----VGFDAGEVGLVNKTLGLLATIVGALYGGILMQR 285 (491)
T ss_pred HHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011344566777777666666666666666666777776554 789999999987533 344444433 335
Q ss_pred ccccc
Q 018727 345 IDYRF 349 (351)
Q Consensus 345 ~~~r~ 349 (351)
+++|+
T Consensus 286 ~g~~~ 290 (491)
T PRK11010 286 LSLFR 290 (491)
T ss_pred HhHHH
Confidence 55443
No 75
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.85 E-value=4.6e-20 Score=168.39 Aligned_cols=240 Identities=13% Similarity=0.256 Sum_probs=173.7
Q ss_pred HHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-----cChH-HHHHHHH
Q 018727 47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKP-VIIMGTA 120 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~ 120 (351)
...++.++...+.....+|.+.++.|++.++ +|++..+... .+..+++|+++||+ |||| .+.++.+
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~------ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~ 76 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQT------IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQV 76 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHH
Confidence 4456677788888889999999999999999 9998766654 68999999999999 8875 6777777
Q ss_pred HHHHHHHHhhhh---hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727 121 SVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (351)
Q Consensus 121 ~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 196 (351)
+.+++....++. .+++.+++..++.++..+...+. .+++.|++|+|+|+++.++...+..+|.++++.+++.+.+
T Consensus 77 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~- 155 (402)
T PRK11902 77 GLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD- 155 (402)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh-
Confidence 777776666665 35677777777777776666665 9999999999999999999999999999999999988876
Q ss_pred CCCCCCcccccccccC-ccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcc
Q 018727 197 AEKYPNLFSSESLFGK-FPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK 275 (351)
Q Consensus 197 ~~~~~~~~gw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (351)
. ++|+.++.+.++..++..+..++.||+++++.+++ +.. + +....+
T Consensus 156 ---------------~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~---~~~-~--------------~~~~~~ 202 (402)
T PRK11902 156 ---------------RVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPR---SLG-E--------------AVVGPL 202 (402)
T ss_pred ---------------cccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc---hhH-H--------------HHHHHH
Confidence 3 35666667766666655555566777543221110 000 0 011235
Q ss_pred cccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHh
Q 018727 276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITG 333 (351)
Q Consensus 276 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 333 (351)
++++|+|.++..++..++..........+.+.++.+. +|+++.++|.+....+
T Consensus 203 ~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~-----~G~~~~~~g~~~~~~~ 255 (402)
T PRK11902 203 RDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRG-----AGFSAGEVGIVNKTLG 255 (402)
T ss_pred HHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHhHHH
Confidence 5678999888877766666554444334444455443 7899999999876544
No 76
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.85 E-value=5.9e-20 Score=165.00 Aligned_cols=254 Identities=12% Similarity=0.187 Sum_probs=172.8
Q ss_pred cccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-----cChHH-HHHHHHHHHHHHHHh
Q 018727 56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV-IIMGTASVVIFNTLF 129 (351)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~ 129 (351)
......+.+|.+.+++|+|.++ .++.... .+...+ .+++|+++||+ ||||. ++.+.++.+++....
T Consensus 3 ~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l 74 (356)
T TIGR00901 3 PLGLVGNTLPYWLRSKNVSLKT------IGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL 74 (356)
T ss_pred CchhHHhHHHHHHHHcCCCHHH------HHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 3456678889999999999999 8888655 444444 99999999998 89887 456666666665555
Q ss_pred hhh---hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCccc
Q 018727 130 GLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS 205 (351)
Q Consensus 130 ~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~g 205 (351)
++. .+.+.+....++.+++.+...+. .+++.|++|+|+|+++.++...+..+|.++++.+++.+.+ ..|
T Consensus 75 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~g 147 (356)
T TIGR00901 75 SFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS-------PEF 147 (356)
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh-------hcc
Confidence 555 45556666667777776666664 8899999999999999999999999999999999998887 333
Q ss_pred ccccccCccchhHHHHHHHHHHHHHHHHh-ccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccc-
Q 018727 206 SESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP- 283 (351)
Q Consensus 206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 283 (351)
... +.+++|+.++.+.++..++..+..+ ..||+.+.... + +... . +....++++++++.
T Consensus 148 ~~~-~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~-~---~~~~-------~-------~~~~~~~~~~~~~~~ 208 (356)
T TIGR00901 148 ANT-GLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASV-P---KPLT-------Q-------AVLKPIREFFQRKNM 208 (356)
T ss_pred ccc-ccccccHHHHHHHHHHHHHHHHHHHHhccCCCccccc-c---hhHH-------H-------HHHHHHHHHHHhcCc
Confidence 211 1255688888888776666555444 34664321110 0 0000 0 00113345566665
Q ss_pred --hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhh-hHHhh-----hccccccccc
Q 018727 284 --LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGT-KVDTH-----ILPFKIDYRF 349 (351)
Q Consensus 284 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~-~~~~~-----~~~~~~~~r~ 349 (351)
++...+..++..........+++.|+.+ .|+++.+++.+....+. ..+++ .+..|+++|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~ 276 (356)
T TIGR00901 209 IQALLLLLLIVLYKLGDSAATVLTTLFLLD------MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY 276 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 6666666666667777778888888866 68899999988876553 22233 3334666544
No 77
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.84 E-value=7.3e-20 Score=188.15 Aligned_cols=280 Identities=18% Similarity=0.134 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHhhcccc-chhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPIS-SLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
+.+...+...++..+... ......+.+..+++.+... ...+++.+++.+++.++++++|+++||+|||++++++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~ 84 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQV----ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK 84 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence 344444444444444333 2333445555566554322 22688889999999999999999999999999999887
Q ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 120 ASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 120 ~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
++.+++.++. ...++++.++++|++.|++.+...+. .++++|++|+++|++++++.+.+..+|.++||.+++++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655554443 34578999999999999998888775 8999999999999999999999999999999999999876
Q ss_pred CCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcc
Q 018727 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK 275 (351)
Q Consensus 196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (351)
.... .+..+ + .+.++..++......++.++..+.+||.+.......+..+.. . .......+
T Consensus 165 ~~~~-~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~ 225 (1146)
T PRK08633 165 SVNG-NTPSE----I-LGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYL--F-----------PKLLWRNL 225 (1146)
T ss_pred hhcc-ccccc----c-ccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccc--c-----------HHHHHHHH
Confidence 2000 00000 0 111222223333333344445556677654322211000000 0 00011234
Q ss_pred cccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchh-hhHHHHHHHhhhHHhhhcc-cccccc
Q 018727 276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ-MVGEVLAITGTKVDTHILP-FKIDYR 348 (351)
Q Consensus 276 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~g~~~~~~~~~~~~~~~~-~~~~~r 348 (351)
+.+++++.++..++..++.......+..+++.|+.+. +|++.. ..|++.+..+++.+++.++ +++.+|
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r 295 (1146)
T PRK08633 226 KLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV-----LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR 295 (1146)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5577888888877777777666667777888887765 788888 8999999888888776544 344444
No 78
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.84 E-value=8.9e-20 Score=187.11 Aligned_cols=224 Identities=16% Similarity=0.145 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH---HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHH
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM---GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA 159 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~ 159 (351)
.++..+++.+.++++++++|+++||+|||+++.. +.++..+..+.....++++.++++|+++|++.+.+.++ .+++
T Consensus 54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l 133 (1140)
T PRK06814 54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSIL 133 (1140)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhh
Confidence 6788889999999999999999999999997643 22222222233334478999999999999999888886 9999
Q ss_pred hhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccc
Q 018727 160 CEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET 239 (351)
Q Consensus 160 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 239 (351)
.|++|+++|++++++.+.+.++|.++||.++|++.+ ..+|+..+...++..++.+++.+++|++
T Consensus 134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI----------------SGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh----------------ccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999987 4455555544444455555556667765
Q ss_pred cccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCccc
Q 018727 240 LHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN 319 (351)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (351)
+............. ......++.+.+++.++..++..++.++....+..++|.|+.+. +|
T Consensus 198 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g 257 (1140)
T PRK06814 198 GNAAPDLKIDRNII---------------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET-----LG 257 (1140)
T ss_pred CCCCCCCeeccchH---------------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----cC
Confidence 43222111100000 00112355677889999988888888877778888999998876 78
Q ss_pred CchhhhHHHHHHHhhhHHhhhccc
Q 018727 320 YSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 320 ~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
.++...|.+++..+++.+++.+..
T Consensus 258 ~~~~~~g~~~~~~~~g~~ig~~~~ 281 (1140)
T PRK06814 258 GDENVATLFLAVFSVGVAVGSFLA 281 (1140)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988876655
No 79
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.8e-21 Score=165.79 Aligned_cols=212 Identities=18% Similarity=0.214 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI 162 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~ 162 (351)
+|++++...+.+.+.+++.|.+.||+|+|..+++|.+.+..+.+++++.++++.++++|.++|+|.+...++ .++++|.
T Consensus 108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~ 187 (464)
T KOG3764|consen 108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADV 187 (464)
T ss_pred hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888886 9999999
Q ss_pred ccccc-hhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccc
Q 018727 163 FREEH-QALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH 241 (351)
Q Consensus 163 ~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 241 (351)
||+++ |++++|+...+.++|..+||..+|.+.+ -.|++.||.+++++.++-....+++-|+.+
T Consensus 188 f~~d~er~~vmGialgfislG~lvgPpfGGilYe----------------~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 188 FPEDNERGSVMGIALGFISLGVLVGPPFGGILYE----------------FAGKSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred cccchhhhHHHHHHHHHHhccceecCCcccchHh----------------hcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 99765 7999999999999999999999999999 667788889998888887666555544332
Q ss_pred cCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCc
Q 018727 242 RHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS 321 (351)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 321 (351)
....+ ..+..++++++++|.++.........+....-....++.|..+. +.-+
T Consensus 252 ~~~~~----------------------~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~-----m~~p 304 (464)
T KOG3764|consen 252 MDPDS----------------------TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET-----MFTP 304 (464)
T ss_pred cCccc----------------------cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh-----ccCC
Confidence 22211 11234678889999988876666666665555566666666654 3322
Q ss_pred hhhhHHHHHHHhhhHHh
Q 018727 322 TQMVGEVLAITGTKVDT 338 (351)
Q Consensus 322 ~~~~g~~~~~~~~~~~~ 338 (351)
.-+.|..+....+...+
T Consensus 305 ~w~~G~~fLp~~~~y~i 321 (464)
T KOG3764|consen 305 GWEVGLAFLPASLSYAI 321 (464)
T ss_pred Ccceeeeecccccchhc
Confidence 22555555555554444
No 80
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.84 E-value=2.6e-19 Score=163.12 Aligned_cols=268 Identities=13% Similarity=0.139 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
.++.+....++.........|.+|.+. +++|.+..+ .+++.+++.++..+++++.|+++||+|||+.++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~ 76 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTD------TGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIIS 76 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 455666677777777888888887654 568999999 9999999999999999999999999999999988766
Q ss_pred HHHHHHHHh---hhh-----hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727 121 SVVIFNTLF---GLS-----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG 191 (351)
Q Consensus 121 ~~~~~~~~~---~~~-----~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 191 (351)
..+++.... ... +....+++.+++.|++.+...+. ..+..|.. ++++..++......++|.+++|.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g 154 (396)
T TIGR00882 77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAG 154 (396)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHh
Confidence 555443322 111 12334556678888877666554 66666643 33456778888888999999999998
Q ss_pred hhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhc-cccccccCCCCCccchhhHHHhhhhhhhhhhhhhc
Q 018727 192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW-LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR 270 (351)
Q Consensus 192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (351)
.+.+ .+|+.++...++..++..+..+. .||+++++. .+ +. .+ .+ .+..
T Consensus 155 ~l~~-----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~----~~-~~-----~~~~ 203 (396)
T TIGR00882 155 ILFS-----------------IDPQIVFWLGSGFALILMLLLMFAKPKAPSSAT-VA---NA----LG-AN-----ASAF 203 (396)
T ss_pred hhhc-----------------cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhh-hh---cc----cc-cc-----cCCC
Confidence 8763 34556666666666555444433 333321110 00 00 00 00 0011
Q ss_pred ccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh-----ccccc
Q 018727 271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI-----LPFKI 345 (351)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-----~~~~~ 345 (351)
+.++.++++|+|+++..++..+...........+++.|+.+.... .+.+....|...+...+...+.. +..|+
T Consensus 204 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~ 281 (396)
T TIGR00882 204 SLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFAT--PQQGTRVFGYVTTMGELLNALIMFCAPLIINRI 281 (396)
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112356778899888776666555555555666677777664221 24555667777776665554433 34466
Q ss_pred ccccc
Q 018727 346 DYRFF 350 (351)
Q Consensus 346 ~~r~~ 350 (351)
++|++
T Consensus 282 g~~~~ 286 (396)
T TIGR00882 282 GAKNA 286 (396)
T ss_pred ccchh
Confidence 66653
No 81
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.84 E-value=7.3e-19 Score=163.19 Aligned_cols=175 Identities=14% Similarity=0.188 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHH-h--hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hcChHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIK-D--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII 116 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~ 116 (351)
+.++.++...++..+.++...+.+|.+.+ + +|++..+ .+++.+.+.++..++++++|+++|| +|||+++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~------ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~ 83 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQ------AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV 83 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence 44566777888888888888888887755 4 8999988 9999999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccc---hhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727 117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH---QALGLSTVSTAWGIGLIIGPALGGF 192 (351)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~ 192 (351)
++.++.+++.++.+++++++.+++.|++.|++.|...+. .++++|++|+++ |++++++++.+.++|.++||.++++
T Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~ 163 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV 163 (475)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888888889999999998887764 899999998764 8889999999999999999999999
Q ss_pred hcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccc
Q 018727 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP 237 (351)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (351)
+.+ ..+|+..+...++..++.++.++..+
T Consensus 164 l~~----------------~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 164 IAE----------------NYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHH----------------hcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 987 44555555665544444444444433
No 82
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.83 E-value=1.3e-18 Score=158.37 Aligned_cols=254 Identities=15% Similarity=0.201 Sum_probs=161.1
Q ss_pred HHHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhhcChHHH-HHHHH
Q 018727 44 FSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVI-IMGTA 120 (351)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~-~~~~~ 120 (351)
...++..++..+......|.+|. +.+++|.+..+ .|++.+...+ +..++.+++++ +||+||||.+ ..+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~ 90 (393)
T PRK15011 18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAM------VGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCL 90 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHH
Confidence 34555677777777777888865 56789999999 9998776555 55556655666 9999999875 45556
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchh--hhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQA--LGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 197 (351)
+..++..+.+++++++.+++.+.+.+...+...+. ..+..|+.++++|. ...+..+.+.++|.+++|.+++.+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~-- 168 (393)
T PRK15011 91 LGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM-- 168 (393)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH--
Confidence 65666777778888888766655544433344554 77788877766553 34578888999999999999999988
Q ss_pred CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccc
Q 018727 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK 276 (351)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
..+|+.++...++..++. ++..+++||.+++++..++ + . ...+
T Consensus 169 --------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------~----~~~~ 212 (393)
T PRK15011 169 --------------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG--T----------------L----EAPR 212 (393)
T ss_pred --------------hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc--c----------------c----cccc
Confidence 455666666666555544 3445557776432211000 0 0 0000
Q ss_pred ccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhh-----hccccccccc
Q 018727 277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTH-----ILPFKIDYRF 349 (351)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~-----~~~~~~~~r~ 349 (351)
+ +.+..+...............+..+.|.|+++. +++++.+++.+.+...++.+++ .+..|+++|+
T Consensus 213 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~ 283 (393)
T PRK15011 213 R--NRRDTLLLFVICTLMWGTNSLYIINMPLFIINE-----LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF 283 (393)
T ss_pred c--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 0 112233333333444444555666788887765 7889888988877665554433 3333555554
No 83
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.83 E-value=1.5e-18 Score=155.12 Aligned_cols=176 Identities=13% Similarity=0.108 Sum_probs=145.0
Q ss_pred HHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHH
Q 018727 46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125 (351)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 125 (351)
+|+..|+..+ ........|++.+++|+++.+. .|.+.+++..+++++.++.|+++||+|.|+++.++.+.+++.
T Consensus 32 lC~fGF~~e~-R~n~s~a~p~L~~elglT~~qv-----~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~ 105 (511)
T TIGR00806 32 LCFYGFMAQF-RPGESFITPYLLTVLNFTEETV-----TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCV 105 (511)
T ss_pred HHHHHHHHHh-hchHHHHHHHHHHHcCCCHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 4443333332 3445556688999999998751 688999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCccc
Q 018727 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS 205 (351)
Q Consensus 126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~g 205 (351)
.++.++++++..+.+.|++.|++.|...+...++..++|+++|+++.++.+.+..+|.++++++++.+. .+|
T Consensus 106 t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~--------s~g 177 (511)
T TIGR00806 106 WLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV--------TLG 177 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcC
Confidence 999999999999999999999998887755999999999999999999999999999999999999843 456
Q ss_pred ccccccCccchhHHHHHHHHHHHHHHHHhccccccc
Q 018727 206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH 241 (351)
Q Consensus 206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 241 (351)
|++.. ...++.....+++++..+++|..++
T Consensus 178 Wr~y~------~Ln~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 178 WISYS------TLNIISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred chhHH------HHHHHHHHHHHHHHHHHHhCCCCch
Confidence 66533 4455555556666777788885444
No 84
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.82 E-value=1.3e-18 Score=161.63 Aligned_cols=149 Identities=17% Similarity=0.183 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHhhccccchhhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hcChHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMG 118 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~ 118 (351)
+.++.++...+...+.++...+.++ ++.+++|.+..+ .+++.+.+.....+..+++|+++|| +||||++.++
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~------a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g 87 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQ------AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLG 87 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHH
Confidence 5566777777888888888877775 556779999888 8899999888888888999999999 9999999999
Q ss_pred HHHHHHHHHHhhhhhhHHH-HHHHHHHhhhhcccchh-HHHHHhhhcccc--chhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727 119 TASVVIFNTLFGLSVNFWM-AVLTRFLLGSLNGLLGP-IKAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFLA 194 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (351)
.++..++.++++++.+... ++++|+++|+|.|...+ ..++++|.+|++ +|+.++++++.+.++|..+||.+++++.
T Consensus 88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888766444 55789999999888776 489999999887 4578899999999999999999999999
Q ss_pred C
Q 018727 195 Q 195 (351)
Q Consensus 195 ~ 195 (351)
+
T Consensus 168 ~ 168 (489)
T PRK10207 168 D 168 (489)
T ss_pred H
Confidence 8
No 85
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.82 E-value=3.3e-18 Score=158.59 Aligned_cols=139 Identities=18% Similarity=0.256 Sum_probs=117.0
Q ss_pred HHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh
Q 018727 50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF 129 (351)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 129 (351)
.....+........++++..++|-++. ..|+.+...++.+++.++.|.++|.+|||.+++.+.++..++.+++
T Consensus 53 ~~~~~~~~~~~a~~l~~I~~diG~~~~-------~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~ 125 (599)
T PF06609_consen 53 VIAAYFVLVLPASILPYINADIGGSDN-------WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVC 125 (599)
T ss_pred HHHHHHHHhccHHHHHHHHHhcCCCcc-------chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHh
Confidence 333445555666777899999987754 6889999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 130 GLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 130 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+.++|...++.+..+.|+|.|........++|..|.|.|+...++......+....+|.++..+..
T Consensus 126 atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~ 191 (599)
T PF06609_consen 126 ATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA 191 (599)
T ss_pred hcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc
Confidence 999999999999999999987777667779999999999888777766655555667777766654
No 86
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.81 E-value=2.4e-18 Score=159.04 Aligned_cols=278 Identities=17% Similarity=0.164 Sum_probs=200.4
Q ss_pred CchHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (351)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 117 (351)
+.|...+..++.........+....+.+.+.++++.+.++ ++|+.++......+..++.+.+.||+|.|++.++
T Consensus 43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~------~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~ 116 (509)
T KOG2504|consen 43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQ------IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIA 116 (509)
T ss_pred eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccH------HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHH
Confidence 3344444444444444444555667788999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHH-HHhhhhcccch-hHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 118 GTASVVIFNTLFGLSVNFWMAVLTR-FLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~r-~l~G~~~g~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
|.++..++.++.+++++.|.+++.. ++.|+|.|... |...++..+|+ |+|+.+.|+...+.++|.++-|.+.-++.+
T Consensus 117 G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~ 195 (509)
T KOG2504|consen 117 GGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLS 195 (509)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence 9999999999999999999888776 67888888754 45777776665 669999999999999999999999999998
Q ss_pred CCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcccc-ccccCCC----------------------CCccchh
Q 018727 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE-TLHRHND----------------------DDDSCDV 252 (351)
Q Consensus 196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~----------------------~~~~~~~ 252 (351)
+.|||......+.+.+-..+....+++ .++..+. ...+...
T Consensus 196 ----------------~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (509)
T KOG2504|consen 196 ----------------KYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSG 259 (509)
T ss_pred ----------------HhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCC
Confidence 555555556665555544444333333 2211000 0000000
Q ss_pred hHH----Hhhhhhhhhhhhh-hcccC-c---ccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchh
Q 018727 253 SYD----ALESASAEVKEEE-GREAT-P---KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ 323 (351)
Q Consensus 253 ~~~----~~~~~~~~~~~~~-~~~~~-~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 323 (351)
..+ ..+...+..++.+ ...+. . ..++++++.++...+...+..........+++.|..+ .+++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~------~g~~~~ 333 (509)
T KOG2504|consen 260 LKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS------LGLSSN 333 (509)
T ss_pred CCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCChh
Confidence 000 0000000000000 01111 1 2578999999999999999999999999999988886 799999
Q ss_pred hhHHHHHHHhhhHHhhhcccc
Q 018727 324 MVGEVLAITGTKVDTHILPFK 344 (351)
Q Consensus 324 ~~g~~~~~~~~~~~~~~~~~~ 344 (351)
+++.++++.++..+++++..+
T Consensus 334 ~aa~l~Siigi~~i~gRi~~G 354 (509)
T KOG2504|consen 334 DAAFLLSIIGVSDIIGRIILG 354 (509)
T ss_pred hhHHHHHHHHHhhhhhhhhhh
Confidence 999999999999999987764
No 87
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.81 E-value=1.4e-18 Score=161.37 Aligned_cols=261 Identities=21% Similarity=0.232 Sum_probs=195.3
Q ss_pred chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
+.+.+..+|...++..++..+....++-+..+..-|+.. .+++..+..+...+.++++|.++||++||++++.+
T Consensus 8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~------valv~~a~~LP~~Llsl~aG~laDr~drrrili~~ 81 (524)
T PF05977_consen 8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLM------VALVQAASTLPILLLSLFAGALADRFDRRRILILS 81 (524)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 345666788888888888888888888777777767777 99999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhhh-----hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727 119 TASVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192 (351)
Q Consensus 119 ~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 192 (351)
-++.++..+..++ ..+.+.+++.-++.|++.+...|+ ++++.|+.|+++...+.++.+...++..++||.++|.
T Consensus 82 ~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~ 161 (524)
T PF05977_consen 82 QLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI 161 (524)
T ss_pred HHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence 8776655443332 246788899999999999999997 9999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhccc
Q 018727 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272 (351)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (351)
+.. ..|....+.+.++..++.+++....+.+....... .+.. ...-.
T Consensus 162 Lva----------------~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~---~e~~--------------~~~l~ 208 (524)
T PF05977_consen 162 LVA----------------FFGAAAAFLINALSFLISILALLRWKPPPPPSSLP---RERF--------------FSALR 208 (524)
T ss_pred HHH----------------HHHHHHHHHHHHHHHHHHHHHHHHccccccccccc---hhhh--------------hhhHH
Confidence 987 34444555665555555444444443322111100 0000 00111
Q ss_pred CcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
..++.+.++|.+...++..+++++....+...+|.+..+. +|.++...|++.+..+++.+++.+..
T Consensus 209 ~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~-----l~~~a~~yGll~a~~gvGai~Gal~~ 274 (524)
T PF05977_consen 209 EGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV-----LGGGASGYGLLLAAFGVGAILGALLL 274 (524)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH-----hCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344455677777776666677777777778889887776 78899999999999999999877665
No 88
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.81 E-value=1.2e-18 Score=160.02 Aligned_cols=270 Identities=13% Similarity=0.069 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
+.++.++...++..+..+...+++|.+.+ ++|++..+ .|++.++..++..++++++|+++||+|||++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~ 83 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTD------TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWII 83 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 34555666677777777777888876555 48999999 999999999999999999999999999999998876
Q ss_pred HHHHHHHHHhh---hhhh-----HHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727 120 ASVVIFNTLFG---LSVN-----FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG 190 (351)
Q Consensus 120 ~~~~~~~~~~~---~~~~-----~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 190 (351)
.+.+++..... .... ....++.+++.|.+.....+. ..+. +.. .++++..++......++|..++|.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~ 161 (420)
T PRK09528 84 SGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIA 161 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHH
Confidence 65554432211 1111 111122222233222222222 2332 222 34567788888889999999999999
Q ss_pred hhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhc
Q 018727 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR 270 (351)
Q Consensus 191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (351)
+.+.+ .+|+.+++..++..++..+..++.+++++++....++.+ .++ +..
T Consensus 162 g~l~~-----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----~~~ 211 (420)
T PRK09528 162 GILFN-----------------INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALG--------ANA-----SAV 211 (420)
T ss_pred HHHHh-----------------cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchh--------ccc-----ccc
Confidence 98874 234455566665555555444444332221110000000 000 000
Q ss_pred ccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh-----ccccc
Q 018727 271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI-----LPFKI 345 (351)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-----~~~~~ 345 (351)
..+..++.+|+|.++...+...........+...+|.|+.+... +.+.+..+.|.+.+...+...+++ +..|+
T Consensus 212 ~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 289 (420)
T PRK09528 212 SLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFA--TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI 289 (420)
T ss_pred cHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11123456788887766555555544444555566766654311 135566778888777666554443 33466
Q ss_pred ccccc
Q 018727 346 DYRFF 350 (351)
Q Consensus 346 ~~r~~ 350 (351)
++|+.
T Consensus 290 g~~~~ 294 (420)
T PRK09528 290 GAKNA 294 (420)
T ss_pred Ccchh
Confidence 66653
No 89
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.79 E-value=4.7e-22 Score=184.33 Aligned_cols=185 Identities=22% Similarity=0.385 Sum_probs=142.7
Q ss_pred HHHhhccccchhhhHHHHH--Hhhcccccccc---hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 50 VLCTALPISSLFPFLYFMI--KDFQIAKREED---IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
.+..+++........+... ..+..+....+ .+.+.++..+...++..+|++++|.++||+|||+.+.++.++..+
T Consensus 9 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i 88 (451)
T PF00083_consen 9 GFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMII 88 (451)
T ss_pred HHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccc
Confidence 3555555555544444333 22333322211 234578899999999999999999999999999999999999999
Q ss_pred HHHHhhhhh---hHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCC
Q 018727 125 FNTLFGLSV---NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200 (351)
Q Consensus 125 ~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 200 (351)
+.++.++++ +++.+.++|++.|++.|...+ ...++.|..|+++|++..++.+.+..+|..++..++..+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~--- 165 (451)
T PF00083_consen 89 GSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS--- 165 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---
Confidence 999999999 999999999999999888666 5999999999999999999999999999998888775553311
Q ss_pred CCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCC
Q 018727 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDD 247 (351)
Q Consensus 201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 247 (351)
+ .+.||..+....+..++.++...++||+|++...+.
T Consensus 166 ----~------~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~ 202 (451)
T PF00083_consen 166 ----D------NWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKG 202 (451)
T ss_pred ----c------cccccccccccccccccccccccccccccceecccc
Confidence 1 234566667777777777777789999999865444
No 90
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.78 E-value=9e-17 Score=137.09 Aligned_cols=237 Identities=16% Similarity=0.097 Sum_probs=193.7
Q ss_pred ccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhh
Q 018727 55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN 134 (351)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
-....+.|.++.+.+++|+|.+. .|+++++..+...+.+++..+++.|+|.++.+..++++.+++.++=... +
T Consensus 26 ~~itsvgPLL~~Ir~~~gls~s~------aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~ 98 (395)
T COG2807 26 PAITSVGPLLDEIRQDLGLSFSV------AGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-G 98 (395)
T ss_pred hhhhhhhhhHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-c
Confidence 35678889999999999999999 9999999999999999999999999999999999999999999888777 7
Q ss_pred HHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCc
Q 018727 135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF 213 (351)
Q Consensus 135 ~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~ 213 (351)
.+.++.+-.+.|.+.+...+. +..+-+.||++ -+..+|+|....++|+.+++.+...+.+. . .
T Consensus 99 ~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~-------~--------~ 162 (395)
T COG2807 99 LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQH-------S--------G 162 (395)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHh-------h--------c
Confidence 778889999999999998886 99999999866 68999999999999999999999998872 1 1
Q ss_pred cchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHH
Q 018727 214 PYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV 293 (351)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 293 (351)
+|+....+-+..+++.++.+ +|...++...+ ......+...++|+|.-|.+.+.+.+
T Consensus 163 gW~~aL~~WAl~allAl~~W--lPq~~r~~~~~---------------------~~~~~~~~~~vw~~~~aW~vtLfmGl 219 (395)
T COG2807 163 GWRGALGFWALLALLALLIW--LPQALREQAAS---------------------IATKLVSVRKVWRSPLAWQVTLFMGL 219 (395)
T ss_pred cHHHHHHHHHHHHHHHHHHH--hhhcccccccc---------------------cccccccccccccCchhHHHHHHHHh
Confidence 34444455555555555444 44432211111 01112234568999999999999999
Q ss_pred HHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
.++...+...++|.++.+ .|+|++++|.+.+...+..+...+..
T Consensus 220 qS~~~Y~~~~WLP~ili~------~G~sa~~aG~llsl~~l~~~~~~ll~ 263 (395)
T COG2807 220 QSLLYYIVIGWLPAILID------RGLSAAEAGSLLSLMQLAQLPTALLI 263 (395)
T ss_pred hHHHHHHHHHHHHHHHHH------cCCCHHHhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999988 69999999999999998887765544
No 91
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.77 E-value=2.3e-17 Score=151.02 Aligned_cols=259 Identities=10% Similarity=-0.000 Sum_probs=164.3
Q ss_pred HHHHHHHHhhccccchhhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcC-hHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASV 122 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~ 122 (351)
.+....++.........|.++ .+.+++|++..+ +|++.++..++..++++++|.++||+|| |+++.++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~ 79 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAE------IGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAG 79 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 355566666667777766664 556778999999 9999999999999999999999999965 77888888888
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHH----Hh----hhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727 123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAY----AC----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~----~~----~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 193 (351)
.++..+..+.++++.+++.|++.|++.+...+. .+. .. |......|.+..| .+|.+++|.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l 153 (418)
T TIGR00889 80 ALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL 153 (418)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh
Confidence 888888888889999999999988875554432 332 22 2233333444444 46888888888877
Q ss_pred cCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccC
Q 018727 194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT 273 (351)
Q Consensus 194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (351)
.. ...| .++++.++..++..+..+++||+++.+++++ .+. +.....
T Consensus 154 ~~----------------~~~~-~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~--~~~---------------~~~~~~ 199 (418)
T TIGR00889 154 DI----------------ELSN-IQLYITAGSSALLGVFALTLPDIPVAKSTAK--MSI---------------KVMLGL 199 (418)
T ss_pred cc----------------cchh-HHHHHHHHHHHHHHHHHhcCCCCCCCccccc--cCH---------------HHHhhh
Confidence 32 1112 2344555545555455567787643211110 000 000011
Q ss_pred cccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCC--cccCchhhhHHHHHHHhhhHHhhhc-----ccccc
Q 018727 274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLG--GLNYSTQMVGEVLAITGTKVDTHIL-----PFKID 346 (351)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~g~~~~~~~~~~~~~~~-----~~~~~ 346 (351)
..++++|+|.++...+..++..........+++.|..+..... ..+++....+...+...+..+++++ ..|++
T Consensus 200 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g 279 (418)
T TIGR00889 200 DAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFG 279 (418)
T ss_pred hHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2345678888887777777766655556666677776521000 0123456678888887776665543 33566
Q ss_pred ccc
Q 018727 347 YRF 349 (351)
Q Consensus 347 ~r~ 349 (351)
+|+
T Consensus 280 ~r~ 282 (418)
T TIGR00889 280 IKK 282 (418)
T ss_pred cHH
Confidence 554
No 92
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.76 E-value=2e-17 Score=156.02 Aligned_cols=156 Identities=22% Similarity=0.301 Sum_probs=130.3
Q ss_pred HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhh
Q 018727 69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148 (351)
Q Consensus 69 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 148 (351)
+.+..+... ..+..+++.+|..+|++++|.++||+|||++++.++++..++.++.++++|++.+.+.|++.|++
T Consensus 111 ~~~c~~~~~------~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~ 184 (521)
T KOG0255|consen 111 NLVCDSSTL------VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFF 184 (521)
T ss_pred ceeeCcHhH------HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 344555555 88889999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHH
Q 018727 149 NGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF 227 (351)
Q Consensus 149 ~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~ 227 (351)
.+.... ...+++|++++++|+.+..+ ......++.++|.+++++.. +||+..++..+..+
T Consensus 185 ~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------------------~Wr~~~~~~~~~~~ 245 (521)
T KOG0255|consen 185 GSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------------------DWRWLFWIISIPSG 245 (521)
T ss_pred ccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------------------hHHHHHHHHHHHHH
Confidence 666555 59999999999999999999 77777888888888888864 45555577777776
Q ss_pred HHHHHHhccccccccCCCCCcc
Q 018727 228 GVTIAAFWLPETLHRHNDDDDS 249 (351)
Q Consensus 228 ~~~~~~~~~~e~~~~~~~~~~~ 249 (351)
+.++..+..||++++...+.+.
T Consensus 246 ~~~~~~~l~~Es~rwl~~~g~~ 267 (521)
T KOG0255|consen 246 LFLLLWFLPPESPRWLLSKGRI 267 (521)
T ss_pred HHHHHHHccCcChHHHHHcCch
Confidence 6666667777999886554443
No 93
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.76 E-value=5.9e-17 Score=147.36 Aligned_cols=243 Identities=12% Similarity=0.077 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHH--HHHHHHHHHHhhhhh-hhhhhhhcChHHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYV--GSSFMFGRALTSVFW-GLVADRYGRKPVIIMGT 119 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-g~l~dr~Grr~~~~~~~ 119 (351)
+..+...++.+++..+...|.+|.+.++.|.+..+ +|++ .+.+.+...+.+++. ++.+||+||||..++..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~------iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~ 76 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTA------LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM 76 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence 44567778899999999999999999999999999 9987 456677787888888 55799999999875554
Q ss_pred HHH-HHHHHHhh---hhhh-HHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727 120 ASV-VIFNTLFG---LSVN-FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (351)
Q Consensus 120 ~~~-~~~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 193 (351)
.+. ..+....+ ...+ ...++...++.++..+...+. ..+..|..++++++...+....+..+|.++++.+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l 156 (390)
T TIGR02718 77 QCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVL 156 (390)
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 21122222 2222 223333333444444445553 66778888888888888888888889999999888888
Q ss_pred cCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccC
Q 018727 194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT 273 (351)
Q Consensus 194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (351)
.+ ..+|+.++++.++..++..+..++.+|+++++.+++ + +...
T Consensus 157 ~~----------------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~---~------------------~~~~ 199 (390)
T TIGR02718 157 FG----------------KFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAP---L------------------ARRA 199 (390)
T ss_pred HH----------------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccc---h------------------hhHH
Confidence 87 556666677777766665555455544322111000 0 0011
Q ss_pred cccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhh
Q 018727 274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGT 334 (351)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 334 (351)
+.++.+|+|.++..+...++..........+.+.|+.+ .|++++++|.+....++
T Consensus 200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------~G~s~~~ig~~~~~~~~ 254 (390)
T TIGR02718 200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD------AGWPLEWIGRLGMAGGA 254 (390)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh------cCCCHHHHHHHHhHHHH
Confidence 34567888888888877778877777888888888876 69999999999876653
No 94
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.8e-17 Score=145.11 Aligned_cols=196 Identities=17% Similarity=0.179 Sum_probs=141.7
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHhh-cccccccch-hhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727 44 FSIWIIVLCTALPISSLFPFLYFMIKDF-QIAKREEDI-GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (351)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 121 (351)
.......+.+.++...++...+.+...+ |.+...... +.-.+.+..+..+|.++|++++|+++||+|||+++...+++
T Consensus 44 ~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liI 123 (538)
T KOG0252|consen 44 IIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELII 123 (538)
T ss_pred HHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHH
Confidence 3445567788888888888887776554 222111000 11167888889999999999999999999999999999999
Q ss_pred HHHHHHHhhhhh-------hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727 122 VVIFNTLFGLSV-------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (351)
Q Consensus 122 ~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 193 (351)
..++.+++++.. -.+++...|++.|+|.|.-.|+ .++.+|....+.||...+.+....+.|...|.+++-.+
T Consensus 124 mIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv 203 (538)
T KOG0252|consen 124 MIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIV 203 (538)
T ss_pred HHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHH
Confidence 999998776632 2577889999999999997776 88999999999999999877666666555555444333
Q ss_pred c---CCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccC
Q 018727 194 A---QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH 243 (351)
Q Consensus 194 ~---~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 243 (351)
. +...+.++.+ .-. +.-||..+.+.++.+++.+...+.+||+++..
T Consensus 204 ~~~fe~~~~~~~~~---~~l-d~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 204 SAIFEKIFNGPSTY---PHL-DGVWRIIFGLGAVPALLVLYFRLKMPETARYT 252 (538)
T ss_pred HHHHhccCCCCCCc---hHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence 2 1111111000 000 23488888998888888888889999998866
No 95
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.72 E-value=3e-17 Score=151.58 Aligned_cols=245 Identities=15% Similarity=0.117 Sum_probs=157.4
Q ss_pred ccchhhhH-HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----hcChH-HHHHHHHHHHHHHHHhh
Q 018727 57 ISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP-VIIMGTASVVIFNTLFG 130 (351)
Q Consensus 57 ~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~ 130 (351)
.+...+++ +++.+++|+++.+ .|++.++..+..++..++.|+++|| +|||| .++.+....+++.+++.
T Consensus 15 ~~~~~~~l~~~~~~~~g~s~~~------~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 15 FAIVSTYLLFFYTDVLGLSAAF------VGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 34444444 5566778999999 9999999999999999999999998 67754 56677777777776665
Q ss_pred hhhh------HHHHHHHHHHhhhhcccchh-HHHHHhhhc-cccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCC
Q 018727 131 LSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202 (351)
Q Consensus 131 ~~~~------~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 202 (351)
..++ ...+++.+++.+++.+...+ ..++..|.. ++++|++..++.+.+..+|..+++.+.+.+....++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~- 167 (437)
T TIGR00792 89 TTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGD- 167 (437)
T ss_pred hCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-
Confidence 5432 45566677777877666544 477888887 56889999999998888988888777666653111000
Q ss_pred cccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccc
Q 018727 203 LFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN 281 (351)
Q Consensus 203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (351)
...+|+.++.+.+++.++.. +..+..||+++....++++ +......++.++++
T Consensus 168 --------~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~------------------~~~~~~~~~~l~~~ 221 (437)
T TIGR00792 168 --------DKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEK------------------KLSLKQIFKALFKN 221 (437)
T ss_pred --------ccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccccc------------------CCCHHHHHHHHhCC
Confidence 03456766666666655544 3445566654211110000 00011234567889
Q ss_pred cchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI 340 (351)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~ 340 (351)
|.++..++..++..........+.+.|.+.. ++ ++...+.+.....++.+++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~i~~ii~~ 274 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYV-----LG-DPELFSYMGSIAIVAGLIGV 274 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeee-----cC-ChHHHHHHHHHHHHHHHHHH
Confidence 9988887777776666655555555444432 33 44556666555555555433
No 96
>PTZ00207 hypothetical protein; Provisional
Probab=99.71 E-value=2.2e-15 Score=140.77 Aligned_cols=129 Identities=13% Similarity=0.164 Sum_probs=107.8
Q ss_pred ccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh----
Q 018727 57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS---- 132 (351)
Q Consensus 57 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---- 132 (351)
.+..+.+.+.+.+++|++..+ .+++.++. .....++++.|+++||+|||+++.++.++..++.++++++
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~------l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~ 115 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRD------LSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV 115 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHH------HHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345566778899999999988 88887763 3445677789999999999999999999999999998886
Q ss_pred --hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHH-HHHhhhhh
Q 018727 133 --VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLII-GPALGGFL 193 (351)
Q Consensus 133 --~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l 193 (351)
++++.+.+.|++.|++.+...+ +...+.++|| ++||++.|+...+.++|+++ +++..+++
T Consensus 116 i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 116 IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999877666 4778889997 67999999999999999975 55555444
No 97
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.70 E-value=7.5e-16 Score=148.05 Aligned_cols=141 Identities=14% Similarity=0.108 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhc
Q 018727 85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF 163 (351)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~ 163 (351)
.+...+..++..++.++.|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.+...+ ..++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445566788899999999999999999999999999999998888888777788888888876555444 589999999
Q ss_pred cccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcccccccc
Q 018727 164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR 242 (351)
Q Consensus 164 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 242 (351)
|+++|++++|+.+....+|.+++|++++.+.+ . +...++++.+++.++..++.+++||+..+
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~----------------~-~~~~pf~i~a~~lll~~ll~~~LPET~~~ 739 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVG----------------I-TKAAPILFASAALACGGLLALKLPDTRGQ 739 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------h-hhHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 99999999999999999999999999998865 1 23456666666666666667778987653
No 98
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.69 E-value=1.6e-15 Score=141.89 Aligned_cols=174 Identities=15% Similarity=0.241 Sum_probs=123.4
Q ss_pred HHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHH-
Q 018727 51 LCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL- 128 (351)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~- 128 (351)
++.....+....++|.+. +++|.+..+ .++......++..++.++.|+++||+|||+++.++.++..++...
T Consensus 260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~ 333 (490)
T PRK10642 260 IATNVTYYMLLTYMPSYLSHNLHYSEDH------GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPA 333 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 334445556666777765 457887776 777777888889999999999999999999988876544433222
Q ss_pred --hhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCccc
Q 018727 129 --FGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS 205 (351)
Q Consensus 129 --~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~g 205 (351)
...+++...+++++++.|++.+.... ...++.|.+|++.|++++++.+....+++.++|.+.+++.+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~--------- 404 (490)
T PRK10642 334 FILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES--------- 404 (490)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 22234567777888888876555433 477888999999999999975445566678899999888761
Q ss_pred ccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCC
Q 018727 206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245 (351)
Q Consensus 206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 245 (351)
..+|+.++....+.+++.++..+++||++++..+
T Consensus 405 ------~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~ 438 (490)
T PRK10642 405 ------TQNLMMPAYYLMVVAVIGLITGVTMKETANRPLK 438 (490)
T ss_pred ------hCCchHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 1124555555555666666666778999887543
No 99
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.68 E-value=1.5e-15 Score=139.48 Aligned_cols=149 Identities=16% Similarity=0.262 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-cChHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMG 118 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~ 118 (351)
+.++.++...+...+..+....++|.+ .+++|+++.+ .+.+.+.+.....++++++|+++||+ ||||+++++
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~------a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG 82 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNH------AYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG 82 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 456666777777788888888888765 4568999988 99999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHhhhhh-hHHHHHHHHHHhhhhcccchh-HHHHHhhhcccc--chhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727 119 TASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFLA 194 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (351)
.++..++.++++... +...+++...+.+++.|...+ ..++++|.+|++ +|.+++++.+...++|+.++|.+.+++.
T Consensus 83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877665433 223344444444556666655 488999999976 6999999999999999999999999998
Q ss_pred C
Q 018727 195 Q 195 (351)
Q Consensus 195 ~ 195 (351)
+
T Consensus 163 ~ 163 (493)
T PRK15462 163 E 163 (493)
T ss_pred h
Confidence 7
No 100
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.68 E-value=1.7e-15 Score=141.55 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hcChHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMG 118 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~ 118 (351)
+.++.++...++..+..+...++++.+ .+++|++..+ .+++.+.+........+++|+++|| +|||+++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g 94 (500)
T PRK09584 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEAD------SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLG 94 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 346667777777788877777777655 5789999888 7777777665556666799999999 5999999999
Q ss_pred HHHHHHHHHHhhhhh-hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccc--hhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727 119 TASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALGGFLA 194 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (351)
.++.+++..++++++ +.+.+++.+++.|++.|...+. .+++.|++|+++ |..++++++.+.++|..++|.+++++.
T Consensus 95 ~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~ 174 (500)
T PRK09584 95 AIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA 174 (500)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887764 4566778889999998887664 789999998653 456788889999999999999999998
Q ss_pred C
Q 018727 195 Q 195 (351)
Q Consensus 195 ~ 195 (351)
+
T Consensus 175 ~ 175 (500)
T PRK09584 175 A 175 (500)
T ss_pred H
Confidence 8
No 101
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.65 E-value=2.3e-14 Score=129.08 Aligned_cols=198 Identities=18% Similarity=0.254 Sum_probs=152.4
Q ss_pred CCCchHHHHHHHHHHHHhhccccchhhhHHHHHHh--hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcC-h
Q 018727 36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-K 112 (351)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r 112 (351)
++.+||.++...+..++.....+++.+..-.+.++ .+.+.+. .|++.++..++.+++++.+|+.+.|.+. |
T Consensus 29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~f------fG~viaa~slg~~i~~liF~~Ws~k~~~~k 102 (488)
T KOG2325|consen 29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATF------FGLVIAASSLGHAIFSLIFGIWSNKTGSVK 102 (488)
T ss_pred cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcch------hhHHHHHHHHHHHhcchhhcccccccCCcc
Confidence 35667888888888999999888888877555555 5555666 9999999999999999999999999996 7
Q ss_pred HHHHHHHHHHHHHHHHh-hh---hh-hHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHH
Q 018727 113 PVIIMGTASVVIFNTLF-GL---SV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGP 187 (351)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-~~---~~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 187 (351)
+.++.+.++..++++++ ++ .+ .-+.++++|++.|+|.|.....-+|+++....++|.++++....+..+|.++||
T Consensus 103 ~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp 182 (488)
T KOG2325|consen 103 KPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGP 182 (488)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhH
Confidence 88888999999999888 33 23 578899999999999999998999999998889999999999888889999998
Q ss_pred HhhhhhcCCCCCCCCccccccccc-Cc-cchhHHHHHHHHHHHHH-HHHhccccccccCC
Q 018727 188 ALGGFLAQPAEKYPNLFSSESLFG-KF-PYFLPCLCISLFAFGVT-IAAFWLPETLHRHN 244 (351)
Q Consensus 188 ~~~~~l~~~~~~~~~~~gw~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~ 244 (351)
.+...+.... ..|+....+ ++ -|..+.++.++..++.+ ++.++++|..+...
T Consensus 183 ~~q~~f~~Lg-----~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~ 237 (488)
T KOG2325|consen 183 TIQLAFTPLG-----EKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGII 237 (488)
T ss_pred HHHHHHhhhc-----CCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCcc
Confidence 8876665321 222222110 22 25566777777766654 44566777665443
No 102
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.64 E-value=3.3e-14 Score=128.42 Aligned_cols=260 Identities=16% Similarity=0.265 Sum_probs=174.5
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc-ChHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-RKPVIIMGTASVV 123 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~ 123 (351)
.+....++..+..+...|.++.+.++.|++..| +|.+.+...+...++++++|.++||.+ +|+.+.+..++.+
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~q------IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~ 79 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQ------IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSA 79 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence 355566677777788889999999999999999 999999999999999999999999986 5677777777777
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh-hhhcCCCCCCC
Q 018727 124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG-GFLAQPAEKYP 201 (351)
Q Consensus 124 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~~~~ 201 (351)
+........++++.+++..++..+......+. .++..+... +++.-.|-.-..+++|-+++.... +.+..
T Consensus 80 ~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~------ 151 (400)
T PF03825_consen 80 LALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGG------ 151 (400)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHh------
Confidence 76666677788888877777766665555553 555555554 345667777777777777775442 22222
Q ss_pred CcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccc
Q 018727 202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN 281 (351)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (351)
..++ .....++++.++..++.....+.+|+.++++..+++.+ +....+..+++|+
T Consensus 152 -~~~~------~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~------------------~~~~~~~~~llk~ 206 (400)
T PF03825_consen 152 -YLGI------SGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKESVK------------------KLLGLDALKLLKN 206 (400)
T ss_pred -hhcc------ccccHHHHHHHHHHHHHHHHHHhCCCCccccccCCCcc------------------cccchHHHHHhcC
Confidence 1111 01112334444444444444566787663222211110 0111233468999
Q ss_pred cchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCccc-CchhhhHHHHHHHhhhHHh-----hhccccccccc
Q 018727 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN-YSTQMVGEVLAITGTKVDT-----HILPFKIDYRF 349 (351)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~-----~~~~~~~~~r~ 349 (351)
|+++..++..++.......++++.+.|+++ .| .+...++.++++..++-+. .++..|++.|.
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~------~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ 274 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQE------LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW 274 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999999988 45 7777778777765554443 33444666554
No 103
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.63 E-value=2e-14 Score=122.75 Aligned_cols=181 Identities=20% Similarity=0.164 Sum_probs=143.5
Q ss_pred HHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHH
Q 018727 46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125 (351)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 125 (351)
....+....+-.-...-+.|......+.+..+ ..++......+..+++..+|.++|++|||+.+.+..+..++.
T Consensus 83 ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q------~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~ 156 (528)
T KOG0253|consen 83 AGMGWMADAMEMMLLSLILPALDEVWGPSEGQ------APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVF 156 (528)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhchhhhh------hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHH
Confidence 33333333333333334446666777888888 899999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCccc
Q 018727 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS 205 (351)
Q Consensus 126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~g 205 (351)
..+.+.++|+..+.+.|.+.|+|.|......++-.|..|..+|...+-.. ..+.+|.++...++-.+.. .+|
T Consensus 157 ~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~-------~~g 228 (528)
T KOG0253|consen 157 GVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS-------NFG 228 (528)
T ss_pred HHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH-------hhh
Confidence 99999999999999999999999888555588889999999999877766 8999999999999988887 445
Q ss_pred ccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCcc
Q 018727 206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDS 249 (351)
Q Consensus 206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 249 (351)
||+. .........+.....+++||+++....+.++
T Consensus 229 wr~~---------l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~ 263 (528)
T KOG0253|consen 229 WRYL---------LFTSSTPLMFAARFLVWVYESPRFYLAKGDD 263 (528)
T ss_pred HHHH---------HHHHHhHHHHHHHHHhhcccCcchhhhcCCh
Confidence 5543 3555555566667788999999876544433
No 104
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.63 E-value=1.2e-14 Score=133.08 Aligned_cols=251 Identities=18% Similarity=0.204 Sum_probs=163.0
Q ss_pred chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh----hhcChHH
Q 018727 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV 114 (351)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~ 114 (351)
|.++++.++...+...+.+....+.++.+.+++|.+... .+++..+..+...+.+++.|+++| |+||||.
T Consensus 2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~------~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp 75 (477)
T TIGR01301 2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAW------ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP 75 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH
Confidence 345667777777777888888888998889999999888 999999999999999999999999 5999998
Q ss_pred HHHH-HHHHHHHHHHhhhhhhHHH-----------------HHHHHHHhhhhcccc-hhHHHHHhhhccccch--hhhHh
Q 018727 115 IIMG-TASVVIFNTLFGLSVNFWM-----------------AVLTRFLLGSLNGLL-GPIKAYACEIFREEHQ--ALGLS 173 (351)
Q Consensus 115 ~~~~-~~~~~~~~~~~~~~~~~~~-----------------l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r--~~~~~ 173 (351)
++++ .....++..+.+++++... ++++-.+..++.... .+..++++|.+|+++| +.+.+
T Consensus 76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~ 155 (477)
T TIGR01301 76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANA 155 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence 8775 5666666666666555321 122222233344433 3468899999998865 57889
Q ss_pred HHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccc--ccc--CccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCc
Q 018727 174 TVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES--LFG--KFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDD 248 (351)
Q Consensus 174 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~--~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~ 248 (351)
+.+.+.++|+++|+.++++..... .+++.. ..+ ..+.+..|++.++..++.. +..+..+|.+....++.+
T Consensus 156 ~~~~~~~lG~ilg~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~ 230 (477)
T TIGR01301 156 YFSFFMAIGNVLGYAAGAYSGLYK-----IFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI 230 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH-----hcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch
Confidence 999999999999999998752100 111100 000 1256677777776666544 456667886542211110
Q ss_pred cchhhHHHhhhhhhhhhhhhhcccCccccccc-----ccchHHHHHHHHHHHhhHhHHHHHHHHHhcC
Q 018727 249 SCDVSYDALESASAEVKEEEGREATPKKSLLK-----NWPLMSSIIVYCVFSLHDMAYSEIFSLWANS 311 (351)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (351)
++ +.++.+ +.......+++++ ++.++.+++..++..+..+.+..+.+.|..+
T Consensus 231 ~~-----~~~~~~------~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~ 287 (477)
T TIGR01301 231 NS-----EAAPPS------KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGR 287 (477)
T ss_pred hh-----hccccc------ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 00 000000 0000111222222 4677888888888888888888887777654
No 105
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.62 E-value=6.3e-15 Score=134.99 Aligned_cols=175 Identities=12% Similarity=0.112 Sum_probs=125.1
Q ss_pred chhhhHHHHHHhhccccccc--chhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhh---
Q 018727 59 SLFPFLYFMIKDFQIAKREE--DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--- 133 (351)
Q Consensus 59 ~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--- 133 (351)
......+.+.++.+.++... ......+...++..++..++.++.|+++||+|||+++.++.++.+++..+.....
T Consensus 226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~ 305 (418)
T TIGR00889 226 ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEY 305 (418)
T ss_pred HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcch
Confidence 34455566666666543210 0001168888899999999999999999999999999999998888776665532
Q ss_pred -hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHH-HHHHhHHHHHHHhhhhhcCCCCCCCCcccccccc
Q 018727 134 -NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF 210 (351)
Q Consensus 134 -~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~ 210 (351)
+.+.+++.+++.|++.+...+. ..+++|++|+++|++++++.+ ...++|.++||.++|.+.+..++.+
T Consensus 306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~--------- 376 (418)
T TIGR00889 306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYG--------- 376 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc---------
Confidence 2456677888999987776665 888999999999999999997 6788999999999999988332110
Q ss_pred cCccchhHHHHHHHHHHH-HHHHHhccccccccC
Q 018727 211 GKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRH 243 (351)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~ 243 (351)
.++|+..+.+.+++.++ .++..++++|+.+..
T Consensus 377 -~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 377 -TFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI 409 (418)
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 13455555555555444 445566677764433
No 106
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.62 E-value=4.9e-15 Score=137.36 Aligned_cols=269 Identities=13% Similarity=0.043 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHhhccccchhhhH-HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc-----ChHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPV 114 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~ 114 (351)
..+..+...++..++. +.....+ +.+.+++|+++.+ ++...+...+...+-.+ +|+++||++ ||+.
T Consensus 26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~------i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~ 97 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGAR------YQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWY 97 (468)
T ss_pred hHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHH
Confidence 4445566677888887 5554444 5666678999999 98889999888888555 999999997 7777
Q ss_pred HHHHHHHH-HHHHHHhhhhhhHHHH-HHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHH---HHHHHhHHHHHHH
Q 018727 115 IIMGTASV-VIFNTLFGLSVNFWMA-VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTV---STAWGIGLIIGPA 188 (351)
Q Consensus 115 ~~~~~~~~-~~~~~~~~~~~~~~~l-~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~---~~~~~~g~~~~~~ 188 (351)
++++.++. .++....+..++.... .+..++.+++.+...++ -++..|..+ +++....+.. ..+..+|.++++.
T Consensus 98 l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~ 176 (468)
T TIGR00788 98 LVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSL 176 (468)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHH
Confidence 77777666 3443434444443333 34777888887777665 899999998 5554433333 3344589999999
Q ss_pred hhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhh
Q 018727 189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE 268 (351)
Q Consensus 189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (351)
++|.+.+ ..+|+..+.+.++..++..+...+++|++.....+.++.+.. ..........+..
T Consensus 177 l~G~l~~----------------~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 238 (468)
T TIGR00788 177 LGGPLLD----------------KTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM--NMALLTLGVLANV 238 (468)
T ss_pred HHHHHHH----------------hcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchh--hhhhhhhhHHHHH
Confidence 9999987 445555566766666666566677888642111111000000 0000000000000
Q ss_pred hcccCcccccccccchHHHHHHHHH-HHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727 269 GREATPKKSLLKNWPLMSSIIVYCV-FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP 342 (351)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~ 342 (351)
.+.....++.+++|.++..++..++ +....... .+.|+ ......|+++..+|.+....+++.+++...
T Consensus 239 ~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~---~~~f~---~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~ 307 (468)
T TIGR00788 239 KVQILGLRGAIQLLEIAKPLIFIFLSYANLPGAS---GSVFC---ATTQCLPGGPSFSGMSKVVGNLGSLCGVGG 307 (468)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCC---ceeEE---EEcccCCCCcchhhhHHHHHHHHHHHHHHH
Confidence 0111223445677888776555554 22211111 11111 111348999999999999988887765544
No 107
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.60 E-value=4.2e-14 Score=128.73 Aligned_cols=157 Identities=14% Similarity=0.178 Sum_probs=120.8
Q ss_pred chhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHH
Q 018727 59 SLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM 137 (351)
Q Consensus 59 ~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
......|.+ .+++|.+..+ .+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.
T Consensus 234 ~~~~~~p~~l~~~~~~~~~~------~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (393)
T PRK15011 234 LYIINMPLFIINELHLPEKL------AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAI 307 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344556644 4668888877 888887777777889999999999999999888776665555544555677777
Q ss_pred HHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccch
Q 018727 138 AVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF 216 (351)
Q Consensus 138 l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~ 216 (351)
+++.+++.+++.|...+ ...+..|.+|+ +|+++.++++....+|..++|.++|.+.+ .++|+
T Consensus 308 ~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~----------------~~g~~ 370 (393)
T PRK15011 308 LLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE----------------IWNYH 370 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhhhH
Confidence 78888888777666544 36778899985 59999999988899999999999999988 45566
Q ss_pred hHHHHHHHHHHHHHHHHhcccc
Q 018727 217 LPCLCISLFAFGVTIAAFWLPE 238 (351)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~e 238 (351)
.++.+..+..++.++..++.||
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 371 AVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 6667777777777777666664
No 108
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.60 E-value=4.2e-14 Score=129.02 Aligned_cols=161 Identities=19% Similarity=0.167 Sum_probs=125.1
Q ss_pred ccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHH
Q 018727 57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW 136 (351)
Q Consensus 57 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 136 (351)
......+++.+.++.+.+ + .++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++....++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (399)
T PRK05122 232 FGTIATFITLYYAARGWD--G------AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPW 303 (399)
T ss_pred HHHHHHHHHHHHHHcccc--c------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 344445566555665552 3 55666778888899999999999999999999988888888887777778888
Q ss_pred HHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccc
Q 018727 137 MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY 215 (351)
Q Consensus 137 ~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~ 215 (351)
.+++..++.|++.+...+. ...+.|.+|+++|+++.++++....+|..++|.+.|.+.+ ..+|
T Consensus 304 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~----------------~~g~ 367 (399)
T PRK05122 304 MALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS----------------WFGY 367 (399)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HcCH
Confidence 8888889999987766654 6777899999999999999999999999999999999987 4556
Q ss_pred hhHHHHHHHHHHHHHHHHhccccccc
Q 018727 216 FLPCLCISLFAFGVTIAAFWLPETLH 241 (351)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~e~~~ 241 (351)
+..+...++..++.++..+.++++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 368 PSIFLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 66667766666666655555555443
No 109
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.59 E-value=1.2e-16 Score=149.11 Aligned_cols=289 Identities=17% Similarity=0.211 Sum_probs=2.9
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
.+++..+.+.+..+.....+..+.++|+++..+ .|++.+.+-++..+..++..++.+|..|-|.+-++.++.++
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~------~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~ 80 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQ------SGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGL 80 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHH
Confidence 345555566666677777888999999999999 99999999999999999999999997777888899999999
Q ss_pred HHHHhhhhh--------------------------------------------------hHHHHHHHHHHhhhhcccchh
Q 018727 125 FNTLFGLSV--------------------------------------------------NFWMAVLTRFLLGSLNGLLGP 154 (351)
Q Consensus 125 ~~~~~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~g~~~~ 154 (351)
+.+++++.+ -+..++++.++.|+|.....+
T Consensus 81 g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t 160 (539)
T PF03137_consen 81 GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT 160 (539)
T ss_dssp -----------------------------------------------------------------------SSS------
T ss_pred HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence 988876510 024577788999999988888
Q ss_pred H-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCC-------cccccccccCccchhHHHHHHHHH
Q 018727 155 I-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN-------LFSSESLFGKFPYFLPCLCISLFA 226 (351)
Q Consensus 155 ~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~~~ 226 (351)
. .+|+-|..++++-+.++|+.+.+..+|.++|.++++.+......++. .-..+..| -..||.-+++.++..
T Consensus 161 LG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~W-vGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 161 LGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRW-VGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccH-HHHHHHHHHHHHHHH
Confidence 6 99999999999999999999999999999999999988753221110 00111122 345788888887777
Q ss_pred HHHHHHHhccccccccCCCCCccchh---hHHHhhhhhhhhh-------hhhhcccCcccccccccchHHHHHHHHHHHh
Q 018727 227 FGVTIAAFWLPETLHRHNDDDDSCDV---SYDALESASAEVK-------EEEGREATPKKSLLKNWPLMSSIIVYCVFSL 296 (351)
Q Consensus 227 ~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (351)
++..+..++.|+.-+...+..++++. +.++.+....+.+ +..+.-....+++++||.+....+.......
T Consensus 240 ~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~ 319 (539)
T PF03137_consen 240 FLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF 319 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 77777777777654433111111111 0011000000000 1122334567788999999999999999999
Q ss_pred hHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHH-hhhccccc
Q 018727 297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVD-THILPFKI 345 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~-~~~~~~~~ 345 (351)
...++.++.|.|++.. ++.++..++.+.+...+... ++.+.+++
T Consensus 320 ~~~G~~tF~pKylE~Q-----F~~sas~A~~l~G~v~ip~~~~G~llGG~ 364 (539)
T PF03137_consen 320 IVSGFATFLPKYLESQ-----FGLSASQASLLTGIVSIPGAALGILLGGY 364 (539)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH-----hCCCHHHHHHHHhhhhcchhheehheEEE
Confidence 9999999999999887 89999999998887666443 35555543
No 110
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.59 E-value=3.6e-14 Score=129.75 Aligned_cols=140 Identities=21% Similarity=0.273 Sum_probs=114.9
Q ss_pred HHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh
Q 018727 50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF 129 (351)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 129 (351)
.+......+....+.|.+.++.|.+..+ .+.+.+...++..++.++.|+++||+|||+.+..+.+...++..+.
T Consensus 229 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 302 (406)
T PRK11551 229 YFFTLIVLYFLLNWLPSLLVGQGLSRSQ------AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAAL 302 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333334445556678888888998888 8999999999999999999999999999999888777666666666
Q ss_pred hhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 130 GLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 130 ~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
...++.+.+.+..++.|++.+...+ ..+++.|.+|+++|++++|+.+....+|..++|.++|.+.+
T Consensus 303 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 303 AAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 6667777777777778876555445 48899999999999999999999999999999999999987
No 111
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.59 E-value=1.1e-14 Score=112.19 Aligned_cols=135 Identities=33% Similarity=0.577 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhcccc
Q 018727 88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE 166 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~ 166 (351)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+. ..++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34556778899999999999999999999999888888888888889999999999999988776664 88999999999
Q ss_pred chhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH-Hhcccc
Q 018727 167 HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPE 238 (351)
Q Consensus 167 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e 238 (351)
+|++..++.+....+|..++|.+.+.+.+ ..+|+..+.+..+..++..+. .+..||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQ----------------FLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhc----------------ccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999987 444555555555555444433 333444
No 112
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.59 E-value=1.9e-14 Score=129.92 Aligned_cols=140 Identities=13% Similarity=0.016 Sum_probs=111.2
Q ss_pred HHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh
Q 018727 50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF 129 (351)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 129 (351)
.+...+.........+.+.++++.++.+ .+++.+...++..++.++.|+++||+|||+.+.++.++..++.++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 287 (377)
T TIGR00890 214 FFLNAVSGLLLIGLYKPYGQSLGLSDGF------LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAM 287 (377)
T ss_pred HHHHhHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 3333333333444556667788888777 8888999999999999999999999999999998888888887766
Q ss_pred hhhhhH--HHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 130 GLSVNF--WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 130 ~~~~~~--~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
...++. ..++...++.|++.+...+. +.++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 288 LFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred HHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 665532 33445567777776665554 7889999999999999999999999999999999999988
No 113
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.57 E-value=1.3e-13 Score=123.09 Aligned_cols=164 Identities=22% Similarity=0.313 Sum_probs=136.1
Q ss_pred HHHhhccccchhhhHHHHHHhh-cccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChH-HHHHHHHHHHHHHH
Q 018727 50 VLCTALPISSLFPFLYFMIKDF-QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP-VIIMGTASVVIFNT 127 (351)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~ 127 (351)
.+.............|.+.++. |.++.+ .++..+...++..++.++.+++.||+|||+ .+..+..+..++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (352)
T cd06174 184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAE------AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL 257 (352)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3344445555666677666664 888877 999999999999999999999999999999 99999999999998
Q ss_pred HhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccc
Q 018727 128 LFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 206 (351)
Q Consensus 128 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw 206 (351)
.....++.+.+.+..++.|++.+...+. ..++.|..|+++|++.+++.+....+|..++|.+.+.+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~----------- 326 (352)
T cd06174 258 LLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD----------- 326 (352)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 8888888888999999999998877665 9999999999999999999999999999999999999987
Q ss_pred cccccCccchhHHHHHHHHHHHHHHHHhc
Q 018727 207 ESLFGKFPYFLPCLCISLFAFGVTIAAFW 235 (351)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (351)
..+|+..+.+.++..++..+...+
T Consensus 327 -----~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 327 -----TGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred -----ccCcchHHHHHHHHHHHHHHHhee
Confidence 445555567766666665554443
No 114
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.56 E-value=4.6e-14 Score=131.53 Aligned_cols=266 Identities=11% Similarity=0.081 Sum_probs=153.3
Q ss_pred HHHHHHhhccccchhhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh----hhcC-hHHHHHHHH
Q 018727 47 WIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGR-KPVIIMGTA 120 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~ 120 (351)
.+..+...+..+...++++ ++.+.+|++... +|.+..+.-+..++..|+.|.++| |+|| |+.++++.+
T Consensus 12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~------vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i 85 (473)
T PRK10429 12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGL------VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTL 85 (473)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhH
Confidence 3444444555556666665 455567999999 999999999999999999999999 6698 556666777
Q ss_pred HHHHHHHHhhhhh------hHHHHHHHHHHhhhhcccchh-HHHHHhhhc-cccchhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727 121 SVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGF 192 (351)
Q Consensus 121 ~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 192 (351)
..+++..++...+ .+..+++..++.+++.....+ ..++..|+. ++++|.+..+......++|+.+.+.+...
T Consensus 86 ~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~ 165 (473)
T PRK10429 86 ANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLP 165 (473)
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777755543322 123344444555665555444 478889998 58899999888777777776666655544
Q ss_pred hcCCCCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcc
Q 018727 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE 271 (351)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (351)
+.+. +|... - ..+|+....+.++..++. +++++..+|.+.....+.++++ +...
T Consensus 166 ~~~~-------~g~~~-~-~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~----------------~~~~ 220 (473)
T PRK10429 166 FVNY-------VGGGD-R-GFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGS----------------HLTL 220 (473)
T ss_pred HHHH-------hCCCc-h-hhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccccc----------------CCCH
Confidence 3321 11000 0 223444444444444433 3334446664321110000000 0011
Q ss_pred cCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh-----cccccc
Q 018727 272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI-----LPFKID 346 (351)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-----~~~~~~ 346 (351)
...++.+++||.++..++..++..........+.+.|.... .+ +....+.+....+++.+++. +..|++
T Consensus 221 ~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~-----~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g 294 (473)
T PRK10429 221 KDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYV-----IG-DADLFPYYLSYAGAANLVTLILFPRLVKSLS 294 (473)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEE-----CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 12334567888888887777777766655555555444332 22 34455555555444444433 233666
Q ss_pred ccc
Q 018727 347 YRF 349 (351)
Q Consensus 347 ~r~ 349 (351)
+|+
T Consensus 295 kk~ 297 (473)
T PRK10429 295 RRI 297 (473)
T ss_pred cHH
Confidence 554
No 115
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.55 E-value=1.6e-13 Score=124.53 Aligned_cols=148 Identities=12% Similarity=0.064 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
++++...+..++............|.+.+++|.++.+ .+++.+...++..++.++.+++.||+|+|+.+.++.+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~------~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~ 278 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASA------TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAI 278 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHH
Confidence 4455555555555566666677778777889999988 9999999899999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHH-HHHHhHHHHHHHhhhhhcC
Q 018727 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~ 195 (351)
+..+...+.+++++.+.+++.+++.|+..+...+. ..++.+. |+++|+++.++++ ...++|..++|.++|.+.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 279 ACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887775 7888888 9999999999986 5778999999999999998
No 116
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.55 E-value=6.1e-14 Score=131.42 Aligned_cols=289 Identities=17% Similarity=0.215 Sum_probs=216.7
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
.+.+..+...+....+...+..+.+.|+++.++ .|++.+.+-++..+...+..+..-|.-|-+.+-+++++.++
T Consensus 101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~------sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQ------SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL 174 (735)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCc------ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence 455666777777777788889999999999999 99999999999999999999999998888999999999999
Q ss_pred HHHHhhhh--------------------h---------------------------h----HH-HHHHHHHHhhhhcccc
Q 018727 125 FNTLFGLS--------------------V---------------------------N----FW-MAVLTRFLLGSLNGLL 152 (351)
Q Consensus 125 ~~~~~~~~--------------------~---------------------------~----~~-~l~~~r~l~G~~~g~~ 152 (351)
+.+++++. + . ++ .++++.++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 99887651 0 0 22 5667789999999888
Q ss_pred hhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCC-CCccc---ccccccCccchhHHHHHHHHHH
Q 018727 153 GPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PNLFS---SESLFGKFPYFLPCLCISLFAF 227 (351)
Q Consensus 153 ~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~g---w~~~~~~~~~~~~~~~~~~~~~ 227 (351)
.+. .+|+-|...+++-...+|+...+..+|.++|-++++++......+ ....+ -+..| -..||.-|++++.+.+
T Consensus 255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW-IGAWWlGFLi~g~~~~ 333 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW-IGAWWLGFLICGALLL 333 (735)
T ss_pred ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch-hhHHHHHHHHHHHHHH
Confidence 886 999999999999999999999999999999999999987632222 11111 11223 4468888999998888
Q ss_pred HHHHHHhccccccccCCCCCccchhhHHHhhhh--hh--hhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHH
Q 018727 228 GVTIAAFWLPETLHRHNDDDDSCDVSYDALESA--SA--EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE 303 (351)
Q Consensus 228 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 303 (351)
+..+.++++|...++...+.+..+.+....++. +. .....-.+-+...+++++||.+...++...+......++.+
T Consensus 334 ~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~t 413 (735)
T KOG3626|consen 334 FSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYIT 413 (735)
T ss_pred HHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHH
Confidence 888888888876654432211111110000000 00 00001122345677889999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh-hhccccc
Q 018727 304 IFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT-HILPFKI 345 (351)
Q Consensus 304 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~-~~~~~~~ 345 (351)
++|-|+++. +|.++..+..+++..++..+. +-+++++
T Consensus 414 FlPKyLE~Q-----fg~sas~An~l~G~i~vp~~~~Gi~lGG~ 451 (735)
T KOG3626|consen 414 FLPKYLETQ-----FGISASLANILTGSIGVPAAAVGIFLGGL 451 (735)
T ss_pred hhHHHHHHH-----cCCCHHHHHHHhhhhhhhhhhhhhhccce
Confidence 999999987 899999999999877766654 4455543
No 117
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.54 E-value=8.7e-13 Score=116.00 Aligned_cols=268 Identities=13% Similarity=0.085 Sum_probs=169.5
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
...+..+.+.+.+..+.+...+...-++ +.+. .-|...++++.+....+++-|+.||+|-|....++..+-++
T Consensus 49 ~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~------~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~i 121 (480)
T KOG2563|consen 49 AFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSA------ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGI 121 (480)
T ss_pred HHHHHHhcCcchheeehhHHHHHHHHhc-chHH------HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHH
Confidence 4455556666666666676666666677 5555 67888899999999999999999999999999999999999
Q ss_pred HHHHhhhhh------hHH--HHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 125 FNTLFGLSV------NFW--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 125 ~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+..+-..+. .++ ....+..+.+..+-.+... ..+..-||++++|..+..+-..+..+|.+++.++...+..
T Consensus 122 Ga~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 122 GAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred HHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 987765542 333 4445556665555444445 4556679999999999999998999999999999888876
Q ss_pred CCCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCc
Q 018727 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP 274 (351)
Q Consensus 196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (351)
.....+ ...|. ....++...+++.+. .+..+..++.|+.++...+.+.. +......
T Consensus 202 ~~~~~~-~~~~~-------~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------------~~~f~~s 258 (480)
T KOG2563|consen 202 SSKDSE-DNSWL-------FFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------------DASFPKS 258 (480)
T ss_pred CCCCcc-hhHHH-------HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------------cCcHHHH
Confidence 442110 11111 111233333333322 22333333433322221111110 1123456
Q ss_pred ccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc-cccccc
Q 018727 275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP-FKIDYR 348 (351)
Q Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~-~~~~~r 348 (351)
.+++++|+++...++.+........+.++.+..-+. . -|++...+|.......++++++.+. +.+-||
T Consensus 259 i~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~----~--sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dk 327 (480)
T KOG2563|consen 259 IKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALC----P--SGYEGVFAGYIGALMIVAGMLGALASGIIADK 327 (480)
T ss_pred HHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccc----c--ccCCccccchhHHHHHHHHHHHHHHHHhhhhh
Confidence 778899999988888877766655555544442222 2 3555567777777777777665444 345554
No 118
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.54 E-value=2.7e-13 Score=122.50 Aligned_cols=155 Identities=15% Similarity=0.294 Sum_probs=119.4
Q ss_pred hhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 018727 61 FPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV 139 (351)
Q Consensus 61 ~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 139 (351)
....|. +.+++|.++.+ .+++.+...+...++.++.|++.||+|||+++.++.++..+........++.+.++
T Consensus 219 ~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (375)
T TIGR00899 219 IINMPLLIIHELGLPDKL------AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALL 292 (375)
T ss_pred HhhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 45678888887 88887777777788889999999999999998888776666655555667778788
Q ss_pred HHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhH
Q 018727 140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP 218 (351)
Q Consensus 140 ~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~ 218 (351)
+.+++.|++.+...+. ..++.|..|+ ++++++++++....+|..++|.+++.+.+ ..+|+..
T Consensus 293 ~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~----------------~~g~~~~ 355 (375)
T TIGR00899 293 MLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE----------------RWSYHAV 355 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hccchhH
Confidence 8888888887766664 7788898876 46799999999999999999999999987 4556666
Q ss_pred HHHHHHHHHHHHHHHhcccc
Q 018727 219 CLCISLFAFGVTIAAFWLPE 238 (351)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~e 238 (351)
+...++..++..+...+++|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 356 YWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHHHHHheecC
Confidence 67777666666666655543
No 119
>PRK09669 putative symporter YagG; Provisional
Probab=99.53 E-value=1.9e-13 Score=126.55 Aligned_cols=233 Identities=16% Similarity=0.070 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHHHhhccccchhhhH-HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----hcChH-
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP- 113 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~- 113 (351)
.++.+.-.+..+...........++ +++.+++|++... +|.+.++..+..++..|+.|+++|| +||||
T Consensus 8 ~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~------~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp 81 (444)
T PRK09669 8 TKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAI------MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRP 81 (444)
T ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHcccceeeEeeecCCCCCCCcch
Confidence 3433333333333333333444444 5667789999999 9999999999999999999999998 78754
Q ss_pred HHHHHHHHHHHHHHHhhhhh------hHHHHHHHHHHhhhhcccc-hhHHHHHhhhc-cccchhhhHhHHHHHHHhHHHH
Q 018727 114 VIIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLL-GPIKAYACEIF-REEHQALGLSTVSTAWGIGLII 185 (351)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~ 185 (351)
.++.+.+..+++..+....+ ....+++..++.+.+.... .|..++.+|+. ++++|.+..+.......+|..+
T Consensus 82 ~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i 161 (444)
T PRK09669 82 YLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLI 161 (444)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666654443332 2344555555556544343 34578889988 5688998888888888888888
Q ss_pred HHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhh
Q 018727 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEV 264 (351)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (351)
++.+...+... ++.. .. +.+|+..+.+.+++.++.. ++++..+|...... ++
T Consensus 162 ~~~~~~pl~~~-------~~~~-~~-~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~---~~--------------- 214 (444)
T PRK09669 162 VSVIALPLVDI-------LGKG-DE-QKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEV---DN--------------- 214 (444)
T ss_pred HHHHHHHHHHH-------hCCC-ch-hhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCC---cC---------------
Confidence 87766555431 1110 00 3456655555555544443 33444455322110 00
Q ss_pred hhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHH
Q 018727 265 KEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW 308 (351)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (351)
+.......+.++|||+++.+++..++..............|
T Consensus 215 ---~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~ 255 (444)
T PRK09669 215 ---SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYY 255 (444)
T ss_pred ---CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 00011235567899998888777666655554444444433
No 120
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.53 E-value=7.9e-14 Score=128.12 Aligned_cols=131 Identities=18% Similarity=0.141 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI 162 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~ 162 (351)
.+++.++..++..++.+++|+++||+|||+.+..+.++.+++..+.+++++.+.+++.+++.|++.+...+ ...++.|.
T Consensus 264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 343 (420)
T PRK09528 264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN 343 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888988899999999999999999999999998888888888888888999888889999887766555 47889999
Q ss_pred ccccchhhhHhH-HHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHH
Q 018727 163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT 230 (351)
Q Consensus 163 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~ 230 (351)
+|++.|++..+. ++....+|.+++|.+.|.+.+ ..+|+..+...+++.++..
T Consensus 344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~----------------~~G~~~~f~~~~~~~~i~~ 396 (420)
T PRK09528 344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD----------------SIGFQGTYLILGGIVLLFT 396 (420)
T ss_pred cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH----------------hhCchHHHHHHHHHHHHHH
Confidence 999999988765 677888999999999999998 4445555566555555443
No 121
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.52 E-value=3.5e-13 Score=123.70 Aligned_cols=166 Identities=17% Similarity=0.118 Sum_probs=129.7
Q ss_pred chhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHH
Q 018727 59 SLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM 137 (351)
Q Consensus 59 ~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
....+.|.+.++ +|.+..+ .+++.+...++..++.++.+++.||.++++.+..+.++.+++.++....++.+.
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQ------IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWIL 314 (417)
T ss_pred hHHHhhHHHHHhccCCChhH------hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHH
Confidence 345566766666 8988888 999999999999999999999999988888888888888877777777788777
Q ss_pred HHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccch
Q 018727 138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF 216 (351)
Q Consensus 138 l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~ 216 (351)
..+..++.|++.+...+. .+++.|..|++.||+++++++....+|..+||.+.|.+.+ .++++
T Consensus 315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~----------------~~g~~ 378 (417)
T PRK10489 315 AVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA----------------MMTPV 378 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH----------------Hhchh
Confidence 778888888887766665 7889999999999999999999999999999999999998 44444
Q ss_pred hHHHHHHHHHH-HHHHHHhccccccccCCCC
Q 018727 217 LPCLCISLFAF-GVTIAAFWLPETLHRHNDD 246 (351)
Q Consensus 217 ~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~ 246 (351)
..+...++..+ +..+....+|+.++.+.++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (417)
T PRK10489 379 ASASASGFGLLIIGVLLLLVLGELRRFRQTP 409 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 44444444333 3445556667766544433
No 122
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.52 E-value=2.3e-13 Score=121.20 Aligned_cols=269 Identities=14% Similarity=0.110 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
+..+......+...+..+...|+.+...++ .|++.++ +|.+.++..+...+.+++.|.++||+|.||-++...
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~------iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i 80 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTE------IGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFI 80 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHH------HHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHH
Confidence 456667777777778888889999877765 8999999 999999999999999999999999999777655443
Q ss_pred HHHHH--HH-HHhhhhhhH-HHHHHHHHHhhhhccc----chhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727 120 ASVVI--FN-TLFGLSVNF-WMAVLTRFLLGSLNGL----LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG 190 (351)
Q Consensus 120 ~~~~~--~~-~~~~~~~~~-~~l~~~r~l~G~~~g~----~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 190 (351)
.+..+ +. ....+.+-. ..+.++-++.|+..+. ..++ -+++. ... ++.+.-.|-.-..+++|.+++..++
T Consensus 81 ~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~e-r~s-r~~~feYG~~R~wGSig~ai~s~~~ 158 (412)
T PF01306_consen 81 AILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAE-RVS-RRNGFEYGRARMWGSIGFAIASLLA 158 (412)
T ss_dssp HHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHH-HHH-HHHSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHH-HHH-HHhcCCcchHHHHhhHHHHHHHHHh
Confidence 22221 22 221222111 1122233333333222 2222 33332 322 3345667778889999999999999
Q ss_pred hhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccc-cccccCCCCCccchhhHHHhhhhhhhhhhhhh
Q 018727 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP-ETLHRHNDDDDSCDVSYDALESASAEVKEEEG 269 (351)
Q Consensus 191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (351)
|.+.+ .+....+++..+.+++..++.+..+ +.++.....+. .++++ ++
T Consensus 159 G~L~~-----------------i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~-~~~~~-------------~~ 207 (412)
T PF01306_consen 159 GILFN-----------------INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA-LGAKK-------------DK 207 (412)
T ss_dssp HHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT-SSS-----------------
T ss_pred heeee-----------------eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc-cccCC-------------CC
Confidence 98875 2223444555544444444433333 32222111111 00000 00
Q ss_pred cccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh-----hhcccc
Q 018727 270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT-----HILPFK 344 (351)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~-----~~~~~~ 344 (351)
.+.+...+++|+|++|.+.+...........+.+.++.|....... .+.+....|++.+.-.+.-++ -.+..|
T Consensus 208 ~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~--~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r 285 (412)
T PF01306_consen 208 VSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQS--AGQGNQMYGYLWSVQVFLEALMMFFSPWLINR 285 (412)
T ss_dssp --HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccChhHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112345788999999987766666566666666677776654222 345666778877765544433 224447
Q ss_pred cccccc
Q 018727 345 IDYRFF 350 (351)
Q Consensus 345 ~~~r~~ 350 (351)
++.|..
T Consensus 286 ig~k~~ 291 (412)
T PF01306_consen 286 IGAKNL 291 (412)
T ss_dssp H-HHHH
T ss_pred cChHhH
Confidence 777753
No 123
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.52 E-value=9.7e-13 Score=119.77 Aligned_cols=179 Identities=12% Similarity=0.080 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
+..+.+....++..........+.|.+.+++|.+..+ .+...+.+.++..++.++.|++.||+|||+.+..+..
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~ 278 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQY------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALV 278 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 3344444444444555556667788777788999888 8999999999999999999999999999999988877
Q ss_pred HHHHHHHHhhh-hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhcc-ccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727 121 SVVIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (351)
Q Consensus 121 ~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 197 (351)
+..++..+... .++...+ .-++.|++.+...+ ......+.++ +++|++.+++.+....++..++|.+.|++.+..
T Consensus 279 l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~ 356 (393)
T PRK09705 279 LQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS 356 (393)
T ss_pred HHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776654433 2222222 22456777666555 3555566664 678999999999999999999999999999832
Q ss_pred CCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhcccccccc
Q 018727 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHR 242 (351)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~ 242 (351)
+ +|...+.+..+..++.+ +...+.||++++
T Consensus 357 g---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 357 G---------------NYLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred C---------------CchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 2 13444455554444443 335566666543
No 124
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.51 E-value=4.6e-13 Score=121.48 Aligned_cols=148 Identities=13% Similarity=0.086 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChH--HHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VIIM 117 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~--~~~~ 117 (351)
+.++......++..........+.|.+. ++++.+..+ .+++.+...++..++.++.|+++||+|||+ ....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 288 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE------AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA 288 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 4455555666666666666777777655 457888877 889999999999999999999999999996 1111
Q ss_pred ------HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727 118 ------GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG 190 (351)
Q Consensus 118 ------~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 190 (351)
+.++..+........++.+..+....+.+++.+ ..+ ...++.|.+|+++|++++++.+....+|..++|.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~ 367 (399)
T TIGR00893 289 RKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVI 367 (399)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 111111111112222344444444444444455 444 589999999999999999999999999999999999
Q ss_pred hhhcC
Q 018727 191 GFLAQ 195 (351)
Q Consensus 191 ~~l~~ 195 (351)
+.+.+
T Consensus 368 g~l~~ 372 (399)
T TIGR00893 368 GAIAA 372 (399)
T ss_pred hhhcc
Confidence 99988
No 125
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.51 E-value=1.3e-13 Score=127.06 Aligned_cols=247 Identities=15% Similarity=0.119 Sum_probs=161.5
Q ss_pred HHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh----hhcChHH-HHHHHHHHHHHHHHhhhh-h----
Q 018727 64 LYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV-IIMGTASVVIFNTLFGLS-V---- 133 (351)
Q Consensus 64 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~-~~~~~~~~~~~~~~~~~~-~---- 133 (351)
.+++.+.+|+++.. .+++..+..+..++..|+.|.++| |+||||. ++++....+++..++... +
T Consensus 25 ~~f~~~~~gl~~~~------~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~ 98 (428)
T PF13347_consen 25 LYFYTDVLGLSPAL------AGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLS 98 (428)
T ss_pred HHHHHHHcCCCHHH------HHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhh
Confidence 35666777999988 999999999999999999999999 8998765 556777777777666654 3
Q ss_pred ---hHHHHHHHHHHhhhhcccchh-HHHHHhhhcc-ccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccc
Q 018727 134 ---NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES 208 (351)
Q Consensus 134 ---~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~ 208 (351)
....+.+..++..++...... ..++..|+.+ +++|.+..+.-+.+..+|.++...+.+.+.+..++...
T Consensus 99 ~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~------ 172 (428)
T PF13347_consen 99 FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDT------ 172 (428)
T ss_pred hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcc------
Confidence 122345555555666555544 5889999997 57899999999999999998777777777652221100
Q ss_pred cccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHH
Q 018727 209 LFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS 287 (351)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 287 (351)
..+|+....+.+++.++.. +..+..+|.++...++++ +.......+++++||+++..
T Consensus 173 ---~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~-------------------~~~~~~~~~~~~~nr~~~~l 230 (428)
T PF13347_consen 173 ---SNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK-------------------KISLRDSLRSLFRNRPFRIL 230 (428)
T ss_pred ---chHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc-------------------ccccccchhhhcccchHHHH
Confidence 0245665566555555543 445556761111111100 12234457788999999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh-----hhcccccccccc
Q 018727 288 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT-----HILPFKIDYRFF 350 (351)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~-----~~~~~~~~~r~~ 350 (351)
++..++............+.|.++. .+.+ ...+.+.....+..++ ..+..|+++|+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~y~~~~v-----l~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~ 292 (428)
T PF13347_consen 231 LLAFFLQWLAFALMNTFLPYYFTYV-----LGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV 292 (428)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHH-----hcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee
Confidence 8888888888877777777777665 3433 3344444443333333 333346666653
No 126
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.51 E-value=9.6e-14 Score=128.69 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh--cChHHHHH-
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM- 117 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~- 117 (351)
+.++......++..+.......+++.+.+++|.+..+ .+++.++..++..+++++.|+++||. ++|+...+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 314 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYE------AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFS 314 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHH
Confidence 3344444445555555556666777777888998888 99999999999999999999999983 33433333
Q ss_pred -HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 118 -GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 118 -~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+.++.+++.++....++++.+++.+++.|++.+...+. ..++.|.+|++++++++++++....+|.++||.++|.+.+
T Consensus 315 ~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~ 394 (455)
T TIGR00892 315 FALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD 394 (455)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence 33444444555566778888888999999988777664 8899999999999999999999999999999999999987
No 127
>PRK03699 putative transporter; Provisional
Probab=99.51 E-value=4.6e-13 Score=121.99 Aligned_cols=174 Identities=12% Similarity=0.096 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
.++.+.+..++..........++|.+. +++|++..+ .+.+.+.+.++..++.++.|+++||+|||+.+.....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~ 279 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLED------AGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAG 279 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------hhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Confidence 344444445554455556667778766 567999888 8999999999999999999999999999999888777
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 199 (351)
+..+...+....++.+.+.+..++.|++.+...+ ...+..|..| +++++..+....+..+|..++|.+.|++.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~---- 354 (394)
T PRK03699 280 LALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVA---- 354 (394)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH----
Confidence 7776666666666766666677778876555444 4667777766 446778888888889999999999999998
Q ss_pred CCCcccccccccCccchhHHHHHHHHHHHHHHHHhcccc
Q 018727 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE 238 (351)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 238 (351)
..+++..++..+++.++..+....+++
T Consensus 355 ------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 355 ------------HFGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred ------------HhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 333444445555555444444444443
No 128
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.51 E-value=7.7e-13 Score=120.84 Aligned_cols=173 Identities=14% Similarity=0.237 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHH-HHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGT 119 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~ 119 (351)
+.++...+..++..........+.|.+.+++|.+..+ .+++.+...++..++.++.|+++||+|||+.+. .+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~ 295 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSE------WLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGG 295 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 3344444445555555556667788888889998888 888888889999999999999999999988764 333
Q ss_pred HHHHHHHHHhh-----hhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727 120 ASVVIFNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (351)
Q Consensus 120 ~~~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (351)
+...++.+... ..++.+..++..++.|++.+...+....+.|..| ++|++++|+.+....+|..++|.+++.+.
T Consensus 296 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~ 374 (402)
T TIGR00897 296 VGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFI 374 (402)
T ss_pred HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333322222 1245666667778888876655555556677655 58999999999999999999999999999
Q ss_pred CCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcc
Q 018727 195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL 236 (351)
Q Consensus 195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (351)
+ ..++..++.+.+++.++..+...++
T Consensus 375 ~----------------~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 375 G----------------FFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred h----------------hcchHHHHHHHHHHHHHHHHHHHHh
Confidence 8 5556666677766666655554443
No 129
>PRK12382 putative transporter; Provisional
Probab=99.50 E-value=6.7e-13 Score=120.86 Aligned_cols=155 Identities=21% Similarity=0.210 Sum_probs=120.5
Q ss_pred cccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhH
Q 018727 56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135 (351)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
.......+.+.+.++.+.+ + .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++....++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (392)
T PRK12382 231 GFAVIGTFVSLYFASKGWA--M------AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTA 302 (392)
T ss_pred HHhHHHHHHHHHHHhcCCc--h------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccH
Confidence 3334455566666666554 3 4555667777888999999999999999999999888888888777777888
Q ss_pred HHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCcc
Q 018727 136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP 214 (351)
Q Consensus 136 ~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~ 214 (351)
+.+++..++.|++.+...+. ...+.|.+|+++|+++.++.+....+|..++|.+.+.+.+ ..+
T Consensus 303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~----------------~~g 366 (392)
T PRK12382 303 WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT----------------SFG 366 (392)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhC
Confidence 88888888999887766654 7788899999999999999999999999999999999998 444
Q ss_pred chhHHHHHHHHHHHHHHHHh
Q 018727 215 YFLPCLCISLFAFGVTIAAF 234 (351)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~ 234 (351)
|+..+...+++.++..+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 367 YPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 55555666665555544433
No 130
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.50 E-value=6.5e-13 Score=124.75 Aligned_cols=131 Identities=20% Similarity=0.245 Sum_probs=102.3
Q ss_pred chhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh--hhH
Q 018727 59 SLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNF 135 (351)
Q Consensus 59 ~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~ 135 (351)
....++|.+. +++|.+..+ .+++.+...++..++.++.|+++||+|||+++..+.++..+..++.... .+.
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHT------VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANV 366 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHH
Confidence 3456677776 588999888 9999999999999999999999999999999888876666555433322 333
Q ss_pred HHHHHHHHHhhh-hcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 136 WMAVLTRFLLGS-LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 136 ~~l~~~r~l~G~-~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+.+.+..++.++ +.+.....+.++.|.+|+++|++++++.+....+|..++|.++|.+.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~ 427 (496)
T PRK03893 367 WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ 427 (496)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence 444444444443 344333457889999999999999999999999999999999999998
No 131
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.50 E-value=5e-13 Score=124.46 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
+.++.+++..++..........++|.+. +++|++..+ .++..+...++..++.+++|+++||+|||+.+....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~ 331 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKED------AINTFTLFEIGALVGSLLWGWLSDLANGRRALVACI 331 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence 3455555555555555556677788554 668999888 889999999999999999999999999998776654
Q ss_pred HHHHHHHH--HhhhhhhHHHHHHHHHHhhhh-cccchhHHHHHhhhccccchhhhHhHHHHHHHh-HHHHHHHhhhhhcC
Q 018727 120 ASVVIFNT--LFGLSVNFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLAQ 195 (351)
Q Consensus 120 ~~~~~~~~--~~~~~~~~~~l~~~r~l~G~~-~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~ 195 (351)
.+..++.. .....++.....+.+++.|++ .+..........|.+|+++||++.|+.+....+ |..++|.+.|.+.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 332 ALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 44333322 222334565666777777764 333333356677999999999999999988886 77999999999987
No 132
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.49 E-value=8.2e-13 Score=119.81 Aligned_cols=153 Identities=19% Similarity=0.270 Sum_probs=113.2
Q ss_pred ccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHH
Q 018727 57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW 136 (351)
Q Consensus 57 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 136 (351)
......++|.+.++.|.+..+ .+++.+...++..+++++.|++.||+|+|+++..+..+..++.+... . ..
T Consensus 216 ~~~~~~~lp~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~ 286 (381)
T PRK03633 216 LGSLYGLMPLYLNHQGMSDAS------IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QA 286 (381)
T ss_pred HHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hH
Confidence 334445678777788888877 88888899999999999999999999999999888777776654432 2 22
Q ss_pred HHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccc
Q 018727 137 MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY 215 (351)
Q Consensus 137 ~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~ 215 (351)
......++.|++.+...+ ....+.|..|+++++...+..+...++|..+||.++|.+.+ ..++
T Consensus 287 ~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~----------------~~g~ 350 (381)
T PRK03633 287 AMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ----------------NYSD 350 (381)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhCc
Confidence 334456667765544455 47888899998888888888888999999999999999998 3344
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 018727 216 FLPCLCISLFAFGVTIAAF 234 (351)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~ 234 (351)
+..+.+.+.+.++..+..+
T Consensus 351 ~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 351 NLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4455665555554443333
No 133
>PRK03545 putative arabinose transporter; Provisional
Probab=99.49 E-value=9.8e-13 Score=119.68 Aligned_cols=148 Identities=13% Similarity=0.145 Sum_probs=110.7
Q ss_pred hhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHH-HHhhhhhhHHHHH
Q 018727 62 PFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN-TLFGLSVNFWMAV 139 (351)
Q Consensus 62 ~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 139 (351)
.+++ .+.+++|.+..+ .+++.+...++..++.++.|+++||+|||+... +..+..++. .+....++.+.+.
T Consensus 226 ~~~~~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 298 (390)
T PRK03545 226 SYIEPFVQQVAGLSENF------ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLS 298 (390)
T ss_pred HHHHHHHHHhcCCCccH------HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHH
Confidence 3444 445557888888 899999999999999999999999999887544 444333333 3334566777777
Q ss_pred HHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhH
Q 018727 140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP 218 (351)
Q Consensus 140 ~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~ 218 (351)
+..++.|++.+...+. ...+.|..| ++|++++++++....+|..+||.++|.+.+ .++++..
T Consensus 299 ~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~----------------~~g~~~~ 361 (390)
T PRK03545 299 VLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL----------------HLGLSSI 361 (390)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------ccChhHH
Confidence 8888888886665554 677778776 578999999999999999999999999998 5556666
Q ss_pred HHHHHHHHHHHHHHH
Q 018727 219 CLCISLFAFGVTIAA 233 (351)
Q Consensus 219 ~~~~~~~~~~~~~~~ 233 (351)
+...+++.++..+..
T Consensus 362 ~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 362 GYVGAALALAALVWS 376 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677666666554443
No 134
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.49 E-value=1.4e-12 Score=121.42 Aligned_cols=174 Identities=17% Similarity=0.157 Sum_probs=120.8
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
...+..+......+....+.|.+.+++|.+..+ .++......++..++.++.|+++||+|||+.+.++.++.++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 361 (481)
T TIGR00879 288 GVVLQWFQQFTGINAIMYYSPTIFENAGVSTDH------AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAI 361 (481)
T ss_pred HHHHHHHHHHhCCeehHHHHHHHHHHcCCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 333444444444555666778888889998877 78888888889999999999999999999999988877777
Q ss_pred HHHHhhh-----hh------hHHHHHHHHHHhhh-hcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727 125 FNTLFGL-----SV------NFWMAVLTRFLLGS-LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192 (351)
Q Consensus 125 ~~~~~~~-----~~------~~~~l~~~r~l~G~-~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 192 (351)
+.++... .+ +...+....++.+. +.+.......++.|.+|+++|++++++.+....+|.+++|.+.+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~ 441 (481)
T TIGR00879 362 CLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT 441 (481)
T ss_pred HHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665542 11 22222233333222 333322247788999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHH-HHhcccccc
Q 018727 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETL 240 (351)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~ 240 (351)
+.+ ..+|+..| .+.++++++..+ ..++.||++
T Consensus 442 ~~~-------~~~~~~~f---------~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 442 MLE-------SIGVGGVF---------IFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHH-------hcCcccee---------hhHHHHHHHHHHHHheecccCC
Confidence 887 33444333 454544444433 345566654
No 135
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.49 E-value=2.9e-12 Score=114.54 Aligned_cols=176 Identities=18% Similarity=0.228 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHhhccccchhhhH-HHHHHhhc----ccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-cChHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFL-YFMIKDFQ----IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPV 114 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~ 114 (351)
|.++.++..-+..-++++.+...+ .++..+++ +++++ +.-+.+.+...--...+++||++||+ |+|++
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~------A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETH------ATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHh------hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 557778888899999988887776 45666666 77777 66666666666667889999999995 99999
Q ss_pred HHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHhhhhcccchh-HHHHHhhhccccc--hhhhHhHHHHHHHhHHHHHHHh
Q 018727 115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEH--QALGLSTVSTAWGIGLIIGPAL 189 (351)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~ 189 (351)
++.+.++..++.++.+.+. +...++++-.+.++|.|.+-+ ...++.|.+|+++ |-..+++++.+.++|+.++|++
T Consensus 95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i 174 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII 174 (498)
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH
Confidence 9999999999999998874 678888888888899999877 5999999998643 6677888999999999999999
Q ss_pred hhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcccc
Q 018727 190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE 238 (351)
Q Consensus 190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 238 (351)
.+++.+ +.+|...|..+++-..+.++.+...+.
T Consensus 175 ~~~~~~----------------~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 175 TGLLAI----------------NYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHH----------------hhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 999998 556666666666666666655555543
No 136
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.48 E-value=1.1e-12 Score=119.89 Aligned_cols=159 Identities=18% Similarity=0.232 Sum_probs=120.9
Q ss_pred cchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHH
Q 018727 58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM 137 (351)
Q Consensus 58 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
....+.++.+.++.+.+..+ .....+.+.++..++..++.+..|+++||+|||+.+..+..+..++.+.....++.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
T PRK09874 236 GSIAPILTLYVRELAGNVSN--IAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQ 313 (408)
T ss_pred HHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHH
Confidence 34455566555554332222 1122455666677788889999999999999999999988888777777777778888
Q ss_pred HHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccch
Q 018727 138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF 216 (351)
Q Consensus 138 l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~ 216 (351)
+++.+++.|++.+...+. ..++.+..|+++|++.+++.+....+|..+||.++|.+.+ ..+|+
T Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~----------------~~g~~ 377 (408)
T PRK09874 314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA----------------NYGFR 377 (408)
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh----------------hcchh
Confidence 888999999988877764 7788889999999999999999999999999999999988 45566
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 018727 217 LPCLCISLFAFGVTIAAF 234 (351)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~ 234 (351)
..+.+.+++.++..+..+
T Consensus 378 ~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 378 AVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666777666666544433
No 137
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.4e-12 Score=113.93 Aligned_cols=159 Identities=13% Similarity=0.119 Sum_probs=125.7
Q ss_pred chHHHHHHHHHHHHhhccccchhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh--cChHH-
Q 018727 39 PITELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPV- 114 (351)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~- 114 (351)
+.+.++.+++..++....++.+.-+.|.+ .|..|++..+ +++..+.+-++...|.+++||+|||+ |||..
T Consensus 250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~------a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~ 323 (448)
T COG2271 250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVK------ANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM 323 (448)
T ss_pred cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence 34566778888888889999999999854 5567999988 99999999999999999999999996 67754
Q ss_pred HHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHhhhh-cccchhHHHHHhhhccccchhhhHhHHHHHHHh-HHHHHHHhh
Q 018727 115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALG 190 (351)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~-~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~ 190 (351)
-++.+++..++.+..-.++ |+....++-++.|+. .|....+.....|..|++--|++.|+...+..+ |.+.+....
T Consensus 324 ~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~ 403 (448)
T COG2271 324 ALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPL 403 (448)
T ss_pred HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcc
Confidence 4455555555555555544 457777777888886 455544577888999999999999999998888 999999999
Q ss_pred hhhcCCCCCCCCcccccccc
Q 018727 191 GFLAQPAEKYPNLFSSESLF 210 (351)
Q Consensus 191 ~~l~~~~~~~~~~~gw~~~~ 210 (351)
+++.+ .+||.+.|
T Consensus 404 g~i~d-------~~gW~g~F 416 (448)
T COG2271 404 GYIAD-------TWGWDGGF 416 (448)
T ss_pred eeeEe-------cCCCcchH
Confidence 99988 46666555
No 138
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.46 E-value=2.1e-12 Score=121.36 Aligned_cols=187 Identities=14% Similarity=0.050 Sum_probs=111.7
Q ss_pred HHhhccccchhhhHHHHHHhhcccccccchh-----hhhHH-HHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 51 LCTALPISSLFPFLYFMIKDFQIAKREEDIG-----SYAGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
+...+..+....+.|.+.++.|.+..+.... ..... ...+..++..++.++.++++||+|||++++++..+.++
T Consensus 298 ~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~ 377 (502)
T TIGR00887 298 FLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTV 377 (502)
T ss_pred HHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Confidence 3333344455556788888888875431000 00011 12334445667888999999999999999888877776
Q ss_pred HHHHhhhhhh----HHHHHHHHHHhhh-hcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727 125 FNTLFGLSVN----FWMAVLTRFLLGS-LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (351)
Q Consensus 125 ~~~~~~~~~~----~~~l~~~r~l~G~-~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 199 (351)
+..+.+...+ ...+...-+...+ +.+.......+.+|.+|++.|++++++.+....+|++++|.+.+++.+..++
T Consensus 378 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (502)
T TIGR00887 378 LFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDP 457 (502)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccc
Confidence 6655543221 1111111111222 2233333477889999999999999999999999999999999998862211
Q ss_pred CCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccC
Q 018727 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH 243 (351)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 243 (351)
. .|+.. ..++...+.+.++..++..+..+++||++.+.
T Consensus 458 ~---~~~~~---~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~ 495 (502)
T TIGR00887 458 T---KGYPT---GIWMGHVLEIFALFMFLGILFTLLIPETKGKS 495 (502)
T ss_pred c---ccccc---cccchHHHHHHHHHHHHHHHHheEeccCCCCC
Confidence 0 00000 12233344555555555555567789977643
No 139
>PRK09952 shikimate transporter; Provisional
Probab=99.46 E-value=3.5e-12 Score=117.81 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=113.5
Q ss_pred HHHhhccccchhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHH
Q 018727 50 VLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL 128 (351)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 128 (351)
.++..+..+....+.|.+ .+++|.+... ...+.....+...++.++.|+++||+|||+++..+.++..++.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~y~~~~~g~s~~~------~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~ 332 (438)
T PRK09952 259 RLCELLTMYIVTAFALNYSTQNLGLPREL------FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFP 332 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 333344445555666654 4567777655 444555556667888899999999999999988877665554432
Q ss_pred hhh---h-hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHH-HHHHhHHHHHHHhhhhhcCCCCCCCC
Q 018727 129 FGL---S-VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPN 202 (351)
Q Consensus 129 ~~~---~-~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~~~~ 202 (351)
... . ++.+.+++..++.+++.+...+ .+++++|.+|++.|+++.++.+ .+..+|+.++|.+.+++.+..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~----- 407 (438)
T PRK09952 333 FFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF----- 407 (438)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 222 1 2333444455556676665554 5889999999999999999854 445589999999999998621
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHHHHhccccc
Q 018727 203 LFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET 239 (351)
Q Consensus 203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 239 (351)
..+|..++...++..++..+..+.++|+
T Consensus 408 ---------~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 408 ---------GGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 1235556666666666666666666664
No 140
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.45 E-value=1.7e-14 Score=118.85 Aligned_cols=258 Identities=16% Similarity=0.144 Sum_probs=166.5
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hcChHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVV 123 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~ 123 (351)
..|+..+...+++........++..+.+++..+ ..++-+++..-..+.++++|++.|| +|-|...++-+....
T Consensus 48 ~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~ak------ftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~ 121 (459)
T KOG4686|consen 48 FMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAK------FTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVF 121 (459)
T ss_pred HHHHhcccceeecCCchhhhhhhhcccccceee------eeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHH
Confidence 344444555556555566666777777777777 7888889999999999999999996 677766666666666
Q ss_pred HHHHHhhh---hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727 124 IFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (351)
Q Consensus 124 ~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 199 (351)
++.++++. .+.+|++..+|++.|+|.-...++ +.+...||..|+-+.++|+......+|+.+--.+.+++.+..+.
T Consensus 122 ~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~ 201 (459)
T KOG4686|consen 122 LGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR 201 (459)
T ss_pred HHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHH
Confidence 67666654 688999999999999987667776 89999999999999999999999999998877777777662211
Q ss_pred CCCcccccccccCccchhH---HHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccc
Q 018727 200 YPNLFSSESLFGKFPYFLP---CLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK 276 (351)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
.|+..+-... ..+....+...+++...+-- .++.. |++-+ .++....+..+..
T Consensus 202 ---------~~~~~ghT~LG~~l~~~~~tc~~slical~lg~-------~D~rA----erilh----~e~g~~Ge~pkLt 257 (459)
T KOG4686|consen 202 ---------MFPGVGHTLLGLWLCFEVKTCKQSLICALSLGL-------SDDRA----ERILH----LEEGFLGEEPKLT 257 (459)
T ss_pred ---------hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhHH----HHHHh----hhcCcccCCcccc
Confidence 0100000000 00001111111111111100 00000 00000 0000000001111
Q ss_pred ccc-cccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHH
Q 018727 277 SLL-KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVD 337 (351)
Q Consensus 277 ~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~ 337 (351)
+.. -.|++|.+.+..++++...+.+...-+.+.++. +|+|+..++.+.+.......
T Consensus 258 dv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~r-----fGlS~~~a~~i~s~vy~Isa 314 (459)
T KOG4686|consen 258 DVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKR-----FGLSAVSAGNILSTVYGISA 314 (459)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----hCCChhhccchhhhhhhhhh
Confidence 111 247899999999999999999999999998887 99999999988886554443
No 141
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.44 E-value=7.2e-13 Score=120.29 Aligned_cols=147 Identities=20% Similarity=0.215 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 121 (351)
++......++..........+.|.+. +++|.+..+ .+.+.....++..++.++.|+++||+|||+.+..+..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 294 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANS------ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL 294 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 44444444555555555666777665 667888887 88888889999999999999999999999987755444
Q ss_pred HHHHH--HHhhh--hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHH-HHHHHhHHHHHHHhhhhhcC
Q 018727 122 VVIFN--TLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 122 ~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~ 195 (351)
..+.. ..... .++.+.+....++.|++.+...+ ...++.|.+|+++|+++.++. +....+|..++|.+++.+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 295 AALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence 43322 12222 24566666677778887666555 589999999999999999974 56677899999999999988
No 142
>PRK09848 glucuronide transporter; Provisional
Probab=99.44 E-value=3.4e-12 Score=118.28 Aligned_cols=251 Identities=18% Similarity=0.130 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHHhhccccchhhhH-HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh----cChHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY----GRKPV 114 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----Grr~~ 114 (351)
.+..+.-.+..+...+..+...+++ +++.+.+|++..+ +|.+.+...+..++..++.|+++||. ||||.
T Consensus 7 ~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~ 80 (448)
T PRK09848 7 WRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAA------AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRP 80 (448)
T ss_pred HHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchH
Confidence 3443333334444444444444545 4556667999999 99999999999999999999999996 77765
Q ss_pred H-HHHHHHHHHHHHH-hhh----hh--hHHHHHHHHHHhhhhcccchh-HHHHHhhhcc-ccchhhhHhHHHHHH-----
Q 018727 115 I-IMGTASVVIFNTL-FGL----SV--NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAW----- 179 (351)
Q Consensus 115 ~-~~~~~~~~~~~~~-~~~----~~--~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~----- 179 (351)
. .++.+...+...+ ... .. .....++..++.+++.+...+ ..++..|... +++|.+..+.-..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~ 160 (448)
T PRK09848 81 FLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFV 160 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 5554444433333 221 11 122334444556666666554 4666666554 467887766554433
Q ss_pred HhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhh
Q 018727 180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALE 258 (351)
Q Consensus 180 ~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 258 (351)
.++..++|.+++.... .. ..+|.....+.++..++ .+++....||+.+.+.++
T Consensus 161 ~~~~~~~p~i~~~~g~-------~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~------------ 214 (448)
T PRK09848 161 CLAFLIGPSIKNSSPE-------EM-------VSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ------------ 214 (448)
T ss_pred HHHHHHHHHHHHhCCC-------ch-------hhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC------------
Confidence 3455566666543321 00 00111111122222222 223333445543211100
Q ss_pred hhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHH
Q 018727 259 SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVD 337 (351)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~ 337 (351)
......++.++|||.++...+..++............+.|.++. +|.++...++......++.+
T Consensus 215 ----------~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~ 278 (448)
T PRK09848 215 ----------PSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYV-----LNDTGLFTVLVLVQNLVGTV 278 (448)
T ss_pred ----------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeee-----cCChHHHHHHHHHHHHHHHH
Confidence 00111356688999999888888877777777777777666655 66666555554443333333
No 143
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.42 E-value=2.6e-11 Score=104.77 Aligned_cols=243 Identities=14% Similarity=0.084 Sum_probs=149.6
Q ss_pred HhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhh
Q 018727 52 CTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL 131 (351)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 131 (351)
+...+-....|+...+.+++|+++.+ ++.+.........+..++.|.++||+|||+..++.+++..++++.. .
T Consensus 45 La~~aDWLQGpY~Y~LY~~yg~~~~q------Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~ 117 (354)
T PF05631_consen 45 LAMAADWLQGPYLYALYESYGFSEHQ------IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-H 117 (354)
T ss_pred HHHHHHHhhcchhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-h
Confidence 33445556678887777899999999 9999999999999999999999999999999999999999888644 5
Q ss_pred hhhHHHHHHHHHHhhhhcccchhH--HHHHhhhc----cccchhhhHhHHH-HHHHhHHHHHHHhhhhhcCCCCCCCCcc
Q 018727 132 SVNFWMAVLTRFLLGSLNGLLGPI--KAYACEIF----REEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLF 204 (351)
Q Consensus 132 ~~~~~~l~~~r~l~G~~~g~~~~~--~~~~~~~~----~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 204 (351)
.++++.++++|++.|++......+ .=++.|.- |++..+..++... ...++-.+++.+++-.+.+..
T Consensus 118 ~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~------- 190 (354)
T PF05631_consen 118 SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF------- 190 (354)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh-------
Confidence 678999999999999998876654 33566653 3333333333222 222333444555555554411
Q ss_pred cccccccCccchhHHHHHHHHHHHHHHHHh-ccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccc
Q 018727 205 SSESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283 (351)
Q Consensus 205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (351)
..+...||.....+.++..+.+. .-+|+.....+..+..+ .....++.++++|+
T Consensus 191 -------~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~------------------~~~~a~~~i~~d~r 245 (354)
T PF05631_consen 191 -------GFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSG------------------SFREAWRAILSDPR 245 (354)
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHH------------------HHHHHHHHHHcCch
Confidence 22335566766666655544433 34555433221111000 01123455667788
Q ss_pred hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI 340 (351)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~ 340 (351)
++.+.+...++......+..+.+.-+. . .+ ...--|++++.+-++.+++.
T Consensus 246 il~LG~~qslFE~smy~FVflWtPaL~-----~-~~-~~~P~GlIFssFM~a~MlGS 295 (354)
T PF05631_consen 246 ILLLGLIQSLFEGSMYLFVFLWTPALD-----P-DD-EELPLGLIFSSFMVAMMLGS 295 (354)
T ss_pred hHHHHHHHHHHHHHHHHheeeeeceec-----C-CC-CCCCchHHHHHHHHHHHHHH
Confidence 888777777776665555433332222 1 11 12225666666555555544
No 144
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.42 E-value=6e-12 Score=114.21 Aligned_cols=147 Identities=15% Similarity=0.127 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (351)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 121 (351)
.++......++............|.+.++.|.+..+ .+.+.+...++..+..++.|++.||+|+|+.+..+.++
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~ 279 (382)
T PRK11128 206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSAST------IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAIC 279 (382)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 344333434443444444555666666788988887 89888888888899999999999999999999999998
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHH-HHHHhHHHHHHHhhhhhcC
Q 018727 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~ 195 (351)
.+++.+..+..++.+.+++..++.|++.+...+. ..++.+. +++++++..+.++ ....+|..+||.++|.+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 280 GVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888889998899999999987776664 7777776 5666788888875 5567888999999999998
No 145
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.42 E-value=2.7e-12 Score=119.11 Aligned_cols=171 Identities=14% Similarity=0.100 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh--cChHHH-H
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVI-I 116 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~-~ 116 (351)
+.++...+..++.....+....++|.+.++ +|++..+ .+++...+.++..++.++.|+++||+ |||+.. .
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~ 326 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 326 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHH
Confidence 334444455444444455566778876655 6888877 88888888889999999999999999 555432 2
Q ss_pred HHHHHHHHHHHHhhh--hhhHHHHHHHHHHhhhhc-ccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHH-HHHhhhh
Q 018727 117 MGTASVVIFNTLFGL--SVNFWMAVLTRFLLGSLN-GLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII-GPALGGF 192 (351)
Q Consensus 117 ~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~-g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~ 192 (351)
....+..++.++... ..+.+...+..++.|.+. +.......+..|.+|++.||++.|+.+....+|+.+ +|.+.+.
T Consensus 327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~ 406 (452)
T PRK11273 327 FFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 406 (452)
T ss_pred HHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHH
Confidence 222222333222222 233444444444445432 222223456789999999999999998888887654 7999999
Q ss_pred hcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHH
Q 018727 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAA 233 (351)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (351)
+.+ ..+|+..+.++++..++.++..
T Consensus 407 l~~----------------~~g~~~~f~~~~~~~~~~~~~~ 431 (452)
T PRK11273 407 TVD----------------FFGWDGGFMVMIGGSILAVILL 431 (452)
T ss_pred HHH----------------HhcchHHHHHHHHHHHHHHHHH
Confidence 988 3445555565555555544433
No 146
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.42 E-value=3.3e-12 Score=112.08 Aligned_cols=195 Identities=16% Similarity=0.088 Sum_probs=131.5
Q ss_pred hhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCC-cccccc
Q 018727 131 LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN-LFSSES 208 (351)
Q Consensus 131 ~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~gw~~ 208 (351)
..++++.++++.++.|.|.+...+. +++++++.++|++.+.+++.+.+.++|..++|.+++.+......... ..+-..
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 4568999999999999999998885 99999999999999999999999999999999999988742110000 000000
Q ss_pred cccCccchhHHHHHHHHHHHHHHHHhc--cccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHH
Q 018727 209 LFGKFPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS 286 (351)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 286 (351)
.. ...|+.++.+.++..++..+.+.+ +||.++++ ++ +.. + ++....++.+++|.++.
T Consensus 86 ~~-~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~---~~--~~~--------------~-~~~~~~~~~~~~~~~~l 144 (310)
T TIGR01272 86 AE-AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEAD---VA--RVS--------------S-GDTTQKTSAFQFTHLVL 144 (310)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccc---cc--ccc--------------c-ccccchhhHHhhHHHHH
Confidence 00 134566666554444433333333 34422111 00 000 0 00011234577888888
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-----cccccc
Q 018727 287 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-----KIDYRF 349 (351)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-----~~~~r~ 349 (351)
..+..+++.....+..++++.|+.+. ..+|+++.+.+...+.+..+.+++++.+ |+++|+
T Consensus 145 ~~~~~f~yvg~e~~~~~w~~~yl~~~---~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 145 GALGIFVYVGAEVSAGSFLVNFLSDP---HALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 88888888889999999999999753 1168999999999999998888888666 555544
No 147
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.41 E-value=6.9e-12 Score=115.73 Aligned_cols=168 Identities=14% Similarity=0.056 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh--cCh-HHHHH-
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRK-PVIIM- 117 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr-~~~~~- 117 (351)
++.+....++..........++|.+. +++|.+..+ .+...+.+.++..++.++.|+++||+ ++| +....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~ 318 (434)
T PRK11663 245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVT------ANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF 318 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH------HHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence 44444444444444555666777666 567998888 88889999999999999999999999 333 32222
Q ss_pred --HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcc-cchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727 118 --GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNG-LLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (351)
Q Consensus 118 --~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (351)
+..+..++..... ..+.....+..+..|++.. .........+|.+|+++|++++|+.+....+|..++|.+.+++.
T Consensus 319 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~ 397 (434)
T PRK11663 319 AAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL 397 (434)
T ss_pred HHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 1121221212122 2233333333444454322 22223556789999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHH
Q 018727 195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAA 233 (351)
Q Consensus 195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (351)
+ ..+|...+...+++.++..+..
T Consensus 398 ~----------------~~g~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 398 E----------------IWHWTGFFVVISIAAGISALLL 420 (434)
T ss_pred H----------------hcccHHHHHHHHHHHHHHHHHH
Confidence 8 4455555566666655544433
No 148
>TIGR00895 2A0115 benzoate transport.
Probab=99.41 E-value=2.2e-12 Score=117.29 Aligned_cols=143 Identities=20% Similarity=0.257 Sum_probs=110.9
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
.++...++..........+.|.+.+++|.+..+ .+++.+...++..++.++.|+++||+|||+.+....+....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 327 (398)
T TIGR00895 254 LLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSL------AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVF 327 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 334444444455555666778888888998888 89999999999999999999999999999555444443333
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (351)
Q Consensus 125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 193 (351)
..++....++.+.+++..++.|++.+...+. .+++.|.+|+++|++++|+.+....+|..++|.++|.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 328 AVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 3333333556667777788889887766664 89999999999999999999999999999999999875
No 149
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.40 E-value=1.2e-11 Score=114.06 Aligned_cols=180 Identities=13% Similarity=0.174 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHhhccccchhhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcCh--HHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIM 117 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~ 117 (351)
+.+....+..++..-+.+.+..... +..+++|++..+ ...+..+..+..++|++++|++.||+|.| +++.+
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~------l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~ 354 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ------LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLI 354 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 3344444444544444444444444 445589999998 88888888899999999999999999999 88888
Q ss_pred HHHHHHHHHHHhhh--------hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHH
Q 018727 118 GTASVVIFNTLFGL--------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA 188 (351)
Q Consensus 118 ~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 188 (351)
+++++.+..+...+ .++.+.+++.-++.|+..|...+. .++.+|+.|+++.+..+|++.......+.+||+
T Consensus 355 ~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl 434 (477)
T PF11700_consen 355 SLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL 434 (477)
T ss_pred HHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 87777555544444 567788899999999998887775 999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccc
Q 018727 189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH 241 (351)
Q Consensus 189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 241 (351)
+.+.+.+.+++ .|..+....++.++.+++..+++.++.
T Consensus 435 l~g~i~~~tg~---------------~r~g~~~l~~lf~~gl~ll~~v~~~~g 472 (477)
T PF11700_consen 435 LFGLITDATGS---------------QRYGFLFLLVLFLIGLILLFFVDVEKG 472 (477)
T ss_pred HHHHHHHHhCC---------------chhHHHHHHHHHHHHHHHHhhccchhh
Confidence 99999984432 344455555666666666666665443
No 150
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.40 E-value=1.2e-12 Score=112.04 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=97.2
Q ss_pred HHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHH----HHHHHHHhhhhcccchhHHHHHhhhcccc
Q 018727 91 FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM----AVLTRFLLGSLNGLLGPIKAYACEIFREE 166 (351)
Q Consensus 91 ~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~r~l~G~~~g~~~~~~~~~~~~~~~~ 166 (351)
..+..+.|.++.+++.||+|||+++..+.++++++.++...+.+-.. ++.+|++ -.|.+.++++|..|++|++
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf---isg~fqvaYvYtPEVyPTa 466 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF---ISGAFQVAYVYTPEVYPTA 466 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH---HhchheEEEEecCcccchh
Confidence 34566889999999999999999999999999998877766543332 3344443 2456777799999999999
Q ss_pred chhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccc-ccc
Q 018727 167 HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP-ETL 240 (351)
Q Consensus 167 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~ 240 (351)
.|+++.|..+.+..+|+++.|+++ ... ..+-..+..+...+.++..++..++| |++
T Consensus 467 vRatgvGtcSsmaRIggI~~p~iA-~~~-----------------e~s~sl~i~vy~~~~ilagIavcffPiEtk 523 (528)
T KOG0253|consen 467 VRATGVGTCSSMARIGGIFSPVIA-MRA-----------------ELSTSLPIFVYGALFILAGIAVCFFPIETK 523 (528)
T ss_pred hhhcchhhhhhHHhhhhhhhhHHH-HHh-----------------ccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence 999999999999999999999998 332 22233455566666666666666666 443
No 151
>PRK10504 putative transporter; Provisional
Probab=99.38 E-value=1e-11 Score=115.97 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 42 ELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
.+.......++............|++.+ .+|.++.+ .++......++..++.++.|++.||+|||+++..+.+
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~ 335 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFH------AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTL 335 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 3444444444444444455556676665 47888777 8888888888888888999999999999999998888
Q ss_pred HHHHHHHHhhhh---hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 121 SVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 121 ~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+..+...+.... ++.+.+.+..++.|++.+...+ ...++.+..|+++|+.+.++.+....+|..+|+.+++.+.+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 336 GLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766555442 3344444556677777766555 48888899999999999999999999999999999998876
No 152
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.38 E-value=2.1e-11 Score=111.37 Aligned_cols=267 Identities=19% Similarity=0.282 Sum_probs=162.0
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
...+..+..++......+..+.....++..... +.....+.......+...+.++..|.++||+|||..+.+..+.+.+
T Consensus 26 ~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~-~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l 104 (463)
T KOG2816|consen 26 LLFLYMFSWGLSSTVMTNVILYLACTFGDDYQL-ENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTIL 104 (463)
T ss_pred HHHHHHHHHHhcCcchhhhhhhhhcccccCccc-hhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHH
Confidence 344444555555555555555555554433322 1111122222233567788999999999999999999999988888
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhhhc---ccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCC
Q 018727 125 FNTLFGLSVNFWMAVLTRFLLGSLN---GLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP 201 (351)
Q Consensus 125 ~~~~~~~~~~~~~l~~~r~l~G~~~---g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 201 (351)
..++..+.. + ++++ +.++.. +.+....++++|....++|...+|+.+.....+..++|.+++++..
T Consensus 105 ~~~~~~~~~-~-~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~------ 173 (463)
T KOG2816|consen 105 PALCLLFQG-Y-WFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK------ 173 (463)
T ss_pred hHHHHHHHH-H-HHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------
Confidence 877776655 3 3333 555432 2234458999999999999999999999999999999999999987
Q ss_pred CcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccccc
Q 018727 202 NLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK 280 (351)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (351)
..+...++.+..+..++.. ...+++||+...+..+.... ............ ..+........-.
T Consensus 174 ----------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~ 238 (463)
T KOG2816|consen 174 ----------FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL----RELTPGSLDSSH-VADAFQSLTKVGP 238 (463)
T ss_pred ----------hcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccc----cccCCCcccchh-hhhhhhhhcccCC
Confidence 5566667777777766654 45677888765443321000 000000000000 0000011111223
Q ss_pred ccchHHHHHHHHHHHhhHhHHHH-HHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 281 NWPLMSSIIVYCVFSLHDMAYSE-IFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
+|..+.++...+........-.. ....|+..+ ++++..+.+.+.+.......++++..
T Consensus 239 ~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~-----f~w~~~~~s~~~~~~~~~~~i~~l~~ 297 (463)
T KOG2816|consen 239 DRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK-----FGWNKKEFSDLLSLVSILGIISQLLL 297 (463)
T ss_pred CccchHHHHHHHHHHHHHhcCceeEEEEEEeee-----cCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455545444444443332222 334455555 89999999998888888877766554
No 153
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.37 E-value=1.7e-11 Score=112.89 Aligned_cols=130 Identities=19% Similarity=0.229 Sum_probs=97.4
Q ss_pred hhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 018727 60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV 139 (351)
Q Consensus 60 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 139 (351)
....+|.+.++.|.+..+ .+.+.+...++..++.++.|+++||+|||+.+..+.++..+..+.....++.....
T Consensus 250 ~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGV------VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLL 323 (426)
T ss_pred HHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence 455677777778888777 88888888899999999999999999999999888777666554443322111122
Q ss_pred HHHHHhhh--hcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 140 LTRFLLGS--LNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 140 ~~r~l~G~--~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+.-++.|+ ......+ .+.++.|.+|+++|++++|+......+|+.++|.+.+.+.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~ 382 (426)
T PRK12307 324 LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI 382 (426)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 22223333 2222233 47788999999999999999999999999999999999987
No 154
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.37 E-value=2.4e-11 Score=107.35 Aligned_cols=172 Identities=15% Similarity=0.150 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHhhccccchhhhH-HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
++.++......++...+.+...+++ |.+.+..|++.+. .+++..++.++..+|+.++|+++|| +.|+.+...
T Consensus 210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~------vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~ 282 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSA------VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAA 282 (394)
T ss_pred CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhH------HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHH
Confidence 3445555555555555555555555 6677778999999 9999999999999999999999999 989888888
Q ss_pred HHHHHHHHHHhhh-hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727 119 TASVVIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (351)
Q Consensus 119 ~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 196 (351)
..+..+..+...+ .++.+..++.-++.|+..+..... ...+++ .-++.+..+.+++..+.++|..+|..++|.+.+
T Consensus 283 ~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~- 360 (394)
T COG2814 283 LLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLD- 360 (394)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 7776666655554 455556666666677765554443 566666 446779999999999999999999999999999
Q ss_pred CCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhc
Q 018727 197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW 235 (351)
Q Consensus 197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (351)
++++....+..++..++.++..+.
T Consensus 361 ---------------~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 361 ---------------ALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred ---------------hhchHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777666555443
No 155
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.37 E-value=1.9e-11 Score=114.30 Aligned_cols=133 Identities=17% Similarity=0.131 Sum_probs=96.9
Q ss_pred cccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhh--
Q 018727 56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV-- 133 (351)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-- 133 (351)
..+....+.|.+.++.|.+... ..+......+..+++.++.|+++||+|||++++.+.++.+++.++++...
T Consensus 286 ~~~~~~~~~p~i~~~~g~~~~~------~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~ 359 (479)
T PRK10077 286 GINVVLYYAPEIFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 359 (479)
T ss_pred ChhHHHHHHHHHHHHcCCCCch------HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc
Confidence 3344455668888888888776 66666677788899999999999999999999999888888776654321
Q ss_pred h-HH-HHHHHHHHhhhhccc-chh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727 134 N-FW-MAVLTRFLLGSLNGL-LGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (351)
Q Consensus 134 ~-~~-~l~~~r~l~G~~~g~-~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (351)
+ .+ ......++.+++.+. ..+ ...+++|.+|+++|++++|+.+....+|.++++.+.+.+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 360 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 1 11 222223333333322 334 4899999999999999999999999999998877665443
No 156
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.37 E-value=3.8e-12 Score=114.35 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=111.7
Q ss_pred hhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhh-HHHHH
Q 018727 62 PFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN-FWMAV 139 (351)
Q Consensus 62 ~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 139 (351)
...|.+.++ +|.+..+ .+++.+...++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ .+.++
T Consensus 232 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTH------YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFL 305 (365)
T ss_pred HHhHHHHHHHhCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 566777665 7888888 899999999999999999999999999999999887777777777766664 77788
Q ss_pred HHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 140 ~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+..++.|++.+...+. ..++.|.+|+++|+++.++.+....+|..++|.++|.+.+
T Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999988777665 8899999999999999999999999999999999999876
No 157
>TIGR00898 2A0119 cation transport protein.
Probab=99.36 E-value=1.3e-11 Score=116.25 Aligned_cols=137 Identities=20% Similarity=0.126 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHhhhhcccchh-HHHHHhhhccc
Q 018727 89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF--WMAVLTRFLLGSLNGLLGP-IKAYACEIFRE 165 (351)
Q Consensus 89 ~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~ 165 (351)
....+...++.++.+++.||+|||+++.++.++.+++.++..+.++. +...+..++.+++.+...+ ...+.+|.+|+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 441 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT 441 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 34456677888999999999999999999988888887766665433 3444444555555444444 58899999999
Q ss_pred cchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccC
Q 018727 166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH 243 (351)
Q Consensus 166 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 243 (351)
+.|++++|+.+....+|++++|.+.+ +. ..++..++.+.++..++..+..+++||++.++
T Consensus 442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~ 501 (505)
T TIGR00898 442 VVRNLGVGVCSTMARVGSIISPFLVY-LG-----------------EKWLFLPLVLFGGLALLAGILTLFLPETKGVP 501 (505)
T ss_pred HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-----------------HHHHhhHHHHHHHHHHHHHHHHHcCcCCCCCC
Confidence 99999999999999999999999988 43 23344556666666666666677889876543
No 158
>PRK15075 citrate-proton symporter; Provisional
Probab=99.36 E-value=2.4e-11 Score=112.14 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=97.4
Q ss_pred hhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHH-Hh-
Q 018727 53 TALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT-LF- 129 (351)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-~~- 129 (351)
.....+....+.|.+.++ +|.+..+ .++......++..++.+++|+++||+|||+++.++..+..+... ..
T Consensus 250 ~~~~~~~~~~~~p~~l~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 323 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTVLHLSAAD------SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 344455566777877655 7988887 88888888888899999999999999999988776544332221 11
Q ss_pred --hhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHH-HHHhHHHHHHHhhhhhcC
Q 018727 130 --GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 130 --~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~ 195 (351)
...++...+.+..++.+++.+...+. ..++.|.+|+++|++++++.+. +..+++.++|.+.+.+.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 324 WLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11233434444445556665555553 6788999999999999998644 444567889999999988
No 159
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.35 E-value=3e-11 Score=109.87 Aligned_cols=170 Identities=18% Similarity=0.204 Sum_probs=122.3
Q ss_pred hhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh
Q 018727 53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS 132 (351)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 132 (351)
..-+.+.+..+...+.++-|++..+ +.+......+...+..+++.++.||+|||+.++++..++.+..+++...
T Consensus 282 q~sGi~ai~~Yst~i~~~aG~~~~~------a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~ 355 (485)
T KOG0569|consen 282 QFSGINAIFFYSTSIFKTAGFTPEE------AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIA 355 (485)
T ss_pred HhcCcceeHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3334556666667888888999988 8888888999999999999999999999999999999988888776543
Q ss_pred h----hH--HH---HHHHHHHhhh--hcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCC
Q 018727 133 V----NF--WM---AVLTRFLLGS--LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP 201 (351)
Q Consensus 133 ~----~~--~~---l~~~r~l~G~--~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 201 (351)
. .. |. .+++.++..+ +.|.....+-+.+|.+|++.|..+++.......+..++-...-..+.+
T Consensus 356 ~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~------ 429 (485)
T KOG0569|consen 356 LFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN------ 429 (485)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 1 11 11 1233333333 344333348899999999999999999998888888888777777766
Q ss_pred CcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCC
Q 018727 202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244 (351)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 244 (351)
.+|-...+.+.+...+..+..+..+|||+.+..
T Consensus 430 ----------~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~ 462 (485)
T KOG0569|consen 430 ----------VIGPYVFILFVIPLAIFLIYLYRYLPETKGRTP 462 (485)
T ss_pred ----------HhcchhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence 222222233333344455677888999986554
No 160
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.35 E-value=1.7e-11 Score=111.90 Aligned_cols=131 Identities=18% Similarity=0.260 Sum_probs=102.7
Q ss_pred chhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHH-HHhhhhhhHH
Q 018727 59 SLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN-TLFGLSVNFW 136 (351)
Q Consensus 59 ~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~-~~~~~~~~~~ 136 (351)
......|. +.+++|.+..+ .+++.+...++..++.++.|+++||+|||+.+.++.++..+.. ......++.+
T Consensus 256 ~~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (405)
T TIGR00891 256 PIQDLLPTYLKADLGLSPHT------VANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVA 329 (405)
T ss_pred hhhhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchH
Confidence 33444554 44568888888 8999999999999999999999999999999888876653333 2333345556
Q ss_pred HHHHHHHHhhhhccc-chhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 137 MAVLTRFLLGSLNGL-LGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 137 ~l~~~r~l~G~~~g~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
.+.+..++.|+..+. ....+.++.|.+|+++|++++|+.+....+|..++|.+.|.+.+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 389 (405)
T TIGR00891 330 VLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ 389 (405)
T ss_pred HHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665444 34458889999999999999999999999999999999999998
No 161
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.34 E-value=6.3e-11 Score=110.54 Aligned_cols=136 Identities=18% Similarity=0.276 Sum_probs=118.7
Q ss_pred hccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh
Q 018727 54 ALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS 132 (351)
Q Consensus 54 ~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 132 (351)
.+....+...+|.+.+ ++|.+... .|++.++..+|..++.++.+.+.+|+++++.+..+.++.+++.+..++.
T Consensus 231 ~l~~~a~~aLlPl~a~~~l~~~a~~------yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~ 304 (524)
T PF05977_consen 231 NLFASAVWALLPLFARDVLGGGASG------YGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS 304 (524)
T ss_pred HHhhhHHHHhhhHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence 3333444556776654 57888888 9999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 133 VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 133 ~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
++.+...+..++.|++.....+ ..+.+-+..|++.||++++++++....+..+|.++.|.+.+
T Consensus 305 ~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 305 PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888999988766555 48889999999999999999999999999999999999998
No 162
>PRK11462 putative transporter; Provisional
Probab=99.34 E-value=6.1e-11 Score=110.02 Aligned_cols=248 Identities=14% Similarity=0.053 Sum_probs=145.4
Q ss_pred HHHHHhhccccchhhhH-HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----hcChHH-HHHHHHH
Q 018727 48 IIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPV-IIMGTAS 121 (351)
Q Consensus 48 ~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~-~~~~~~~ 121 (351)
+.-+...........++ .++.+..|+++.. +|.+..+.-+.-++.-|+.|.++|| +||||. ++++.+.
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~------~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~ 89 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGF------VGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALP 89 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHH------HHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHH
Confidence 33333344444444444 4556678999998 9999999999999999999999996 788755 5566666
Q ss_pred HHHHHHHhhhhhh------HHHHHHHHHHhhhhcccch-hHHHHHhhhcc-ccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727 122 VVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLG-PIKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (351)
Q Consensus 122 ~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~-~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 193 (351)
.+++..++...++ ...+.+...+..++..... |..++.+|+.+ +++|.+..+....+..+|..+++.+...+
T Consensus 90 ~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~pl 169 (460)
T PRK11462 90 FGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPL 169 (460)
T ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655543332 2334444455555554444 35788888887 78999999999999999988888776665
Q ss_pred cCCCCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhccc
Q 018727 194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272 (351)
Q Consensus 194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (351)
.+..++... ..+|.....+.+++.++.. +++...+|.++.+. ++ . ...
T Consensus 170 v~~~g~~~~---------~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~--~~--~------------------~~~ 218 (460)
T PRK11462 170 VNLIGGDNK---------PLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPP--TT--T------------------SMR 218 (460)
T ss_pred HHHhCCCch---------hhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCc--cC--C------------------CHH
Confidence 542111000 1244544444444444433 33333444321110 00 0 011
Q ss_pred CcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh
Q 018727 273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT 338 (351)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~ 338 (351)
...+..++||.++.++...++..............|.... .+. +...+.++....+..++
T Consensus 219 ~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~-----~g~-~~~~~~~l~~~~i~~ii 278 (460)
T PRK11462 219 EDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI-----LGT-PEVFVAFLTTYCVGNLI 278 (460)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-----cCC-hHHHHHHHHHHHHHHHH
Confidence 1345667888887776666666555555555555444443 232 23334444454444444
No 163
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.33 E-value=2.2e-11 Score=113.53 Aligned_cols=155 Identities=10% Similarity=0.057 Sum_probs=98.9
Q ss_pred hhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcCh-------HHHHHHHHHHHHHHHHhhh
Q 018727 60 LFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK-------PVIIMGTASVVIFNTLFGL 131 (351)
Q Consensus 60 ~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~~~~~~~~~ 131 (351)
...++|.+ .+++|++..+ .+.+.++..++..++.+++|+++||+||| ..+.+..++.++..++...
T Consensus 271 ~~~~~p~~l~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~ 344 (476)
T PLN00028 271 MDNIIAEYFYDRFGLSLET------AGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR 344 (476)
T ss_pred HHhHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc
Confidence 44455544 5667998888 89999999999999999999999999865 2333333333343444455
Q ss_pred hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccc
Q 018727 132 SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF 210 (351)
Q Consensus 132 ~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~ 210 (351)
.++.+..++..++.+++.+.... ..+++.+..| ++|+++.|+.+.+..+|+.++|.+.+ ..+
T Consensus 345 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~--------------- 407 (476)
T PLN00028 345 ANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGS--------------- 407 (476)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcC---------------
Confidence 55555555555555554333222 3555566554 68999999988877788877776643 111
Q ss_pred cCccchhHHHHHHHHHHHHHHHHhcccc
Q 018727 211 GKFPYFLPCLCISLFAFGVTIAAFWLPE 238 (351)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e 238 (351)
..+|...+.+.+++.++..++.++++.
T Consensus 408 -~~~y~~~f~~~~~~~~i~~~~~~~~~~ 434 (476)
T PLN00028 408 -SYSTETGISLMGVMIIACTLPVAFIHF 434 (476)
T ss_pred -CccHhhHHHHHHHHHHHHHHHHHheec
Confidence 223455556666666666666555543
No 164
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.32 E-value=7.4e-11 Score=108.83 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=87.6
Q ss_pred hccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhh--
Q 018727 54 ALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG-- 130 (351)
Q Consensus 54 ~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-- 130 (351)
....+....++|.+. +++|.+..+ .+...++..++..++.++.|+++||+|||+++.++.++.++......
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~------~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 329 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANV------ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSA 329 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777655 457888777 78888887788888999999999999999988776554433322111
Q ss_pred h--hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHh-HHHHHHHhhhhhc
Q 018727 131 L--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLA 194 (351)
Q Consensus 131 ~--~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~ 194 (351)
. .++....+..-.+.+++.+...+ ...+.+|++|++.|++++|+.+...++ .+...|.+.+.+.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~ 397 (432)
T PRK10406 330 LQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK 397 (432)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence 1 12222222222222223333333 477899999999999999998765553 3445788777553
No 165
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.31 E-value=4.8e-11 Score=107.63 Aligned_cols=276 Identities=17% Similarity=0.148 Sum_probs=175.2
Q ss_pred CCchHHHHHHHHHHHHhhccccchhhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----hcC
Q 018727 37 GLPITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGR 111 (351)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Gr 111 (351)
+.+.+....-.+..+...+.......++. ++.+.+|++... +|.+..+.-+--++.-|+.|.++|| +||
T Consensus 8 kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~------aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr 81 (467)
T COG2211 8 KLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAAL------AGTIFLVARIIDAITDPIMGFIVDRTRSRWGR 81 (467)
T ss_pred cccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHH------HHHHHHHHHHHHHHhcchheeeeccccccccc
Confidence 34445555445555555555566666665 445568999988 8988888888889999999999995 787
Q ss_pred hH-HHHHHHHHHHHHHHHhhhhh------hHHHHHHHHHHhhhhcccch-hHHHHHhhhcc-ccchhhhHhHHHHHHHhH
Q 018727 112 KP-VIIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLG-PIKAYACEIFR-EEHQALGLSTVSTAWGIG 182 (351)
Q Consensus 112 r~-~~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~g~~~-~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g 182 (351)
+| -++.+.+..++...++..++ +....++...+.+++..... |-.++.+|+.+ ++||.+..+.-+.+..+|
T Consensus 82 fRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g 161 (467)
T COG2211 82 FRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLG 161 (467)
T ss_pred ccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHH
Confidence 65 56666677777777666655 23445556677777755544 45778888775 688999999999999999
Q ss_pred HHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhh
Q 018727 183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESAS 261 (351)
Q Consensus 183 ~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 261 (351)
..+...+...+....++.+. ..+|+....+.++..++.. ++++-.+|+..+....++..
T Consensus 162 ~~l~~~~~~plv~~~g~~~~---------~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~----------- 221 (467)
T COG2211 162 GLLVAVLFPPLVKLFGGGDK---------ALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGV----------- 221 (467)
T ss_pred HHHHHHHHHHHHHHhCCCcc---------hhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccc-----------
Confidence 88877777776653322211 2345555555555555443 34445566544222111100
Q ss_pred hhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhh--
Q 018727 262 AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTH-- 339 (351)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~-- 339 (351)
+.+.......+++|++++..++...+.........+...+|.+.. +|.+.......+.......+++
T Consensus 222 ------~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~-----lg~~~l~~~~~~~~~~~~~l~~~~ 290 (467)
T COG2211 222 ------KLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV-----LGDPELFAYLLLLASGAGLLIGLI 290 (467)
T ss_pred ------cccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE-----cCChHHHHHHHHHHHHHHHHHHHH
Confidence 111112334678999999988877777777777777777666655 6666666655555544444332
Q ss_pred ---hccccccccc
Q 018727 340 ---ILPFKIDYRF 349 (351)
Q Consensus 340 ---~~~~~~~~r~ 349 (351)
.+..++|.|+
T Consensus 291 ~~p~L~~~~gkk~ 303 (467)
T COG2211 291 LWPRLVKKFGKKK 303 (467)
T ss_pred hHHHHHHHhchHH
Confidence 2333666654
No 166
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.30 E-value=3.1e-11 Score=110.09 Aligned_cols=131 Identities=16% Similarity=0.097 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI 162 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~ 162 (351)
.+.+.++..+...++.++.|++.||+|||+.+.++.++.++...+....++.+.+++..++.|++...... ...+..+.
T Consensus 256 ~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 335 (396)
T TIGR00882 256 FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ 335 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888888889999999999999999999999888888777777788888888889999887655443 36677788
Q ss_pred ccccchhhhHhH-HHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHH
Q 018727 163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT 230 (351)
Q Consensus 163 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~ 230 (351)
.+++.+++..+. .+....+|+.++|.++|++.+ ..+|+.++.+.++..++..
T Consensus 336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~----------------~~G~~~~f~~~~~~~~i~~ 388 (396)
T TIGR00882 336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD----------------SIGFQGAYLVLGCIVLLFT 388 (396)
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH----------------hcccHHHHHHHHHHHHHHH
Confidence 888888887766 678899999999999999998 4556666666665555443
No 167
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.30 E-value=1.6e-10 Score=108.21 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=111.1
Q ss_pred HHHHHhhcccccccchhhhhHHHHH-HHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh---hhh-hhHHHHH
Q 018727 65 YFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV 139 (351)
Q Consensus 65 ~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~ 139 (351)
|++.+++|++..+ .+++.. ...++..++.+++|+++||+|+|+.+.++.++.++..+.+ +.. ++.+.+.
T Consensus 247 ~~l~~~~G~s~~~------~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~ 320 (491)
T PRK11010 247 TFLIRGVGFDAGE------VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMG 320 (491)
T ss_pred HHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 4445678999988 888874 5567899999999999999999988776665544443322 222 3444444
Q ss_pred HHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhH
Q 018727 140 LTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP 218 (351)
Q Consensus 140 ~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~ 218 (351)
..-++..++.|...+ ..++..+..+++.+++.+++.+....+|..+++.++|.+.+ ..+|...
T Consensus 321 ~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~----------------~~G~~~~ 384 (491)
T PRK11010 321 AAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE----------------AHGWPTF 384 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhChHHH
Confidence 455555554444444 47888899999999999999999999999999999999998 4456666
Q ss_pred HHHHHHHHHHHHHHHhccccc
Q 018727 219 CLCISLFAFGVTIAAFWLPET 239 (351)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~e~ 239 (351)
+.+..+++++.++....++++
T Consensus 385 f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 385 YLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 677777777766665555554
No 168
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.30 E-value=8.9e-12 Score=115.14 Aligned_cols=112 Identities=16% Similarity=0.220 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHhhhhcccchhH-HHHHhh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACE 161 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~ 161 (351)
.+++.+...++..++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+. .++++|
T Consensus 259 ~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (437)
T TIGR00792 259 FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVAD 338 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677777888999999999999999999999999988888777666554 45566667777888887776664 888888
Q ss_pred hcc-------ccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 162 IFR-------EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 162 ~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
..+ ++.+|...++.+.+..+|..+++.+.+.+.+
T Consensus 339 ~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 339 TVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred hhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 5668999999999999999999999999987
No 169
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.30 E-value=3.5e-11 Score=109.49 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=107.7
Q ss_pred HHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh
Q 018727 51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF 129 (351)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 129 (351)
++............+.+.+|.|+++++ ++++.....+ ...++.++.|++.||+|+|+.+..+..+.++..+..
T Consensus 218 ~l~~~~~~~~~~~~~~~l~~~G~s~~~------ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~ 291 (390)
T TIGR02718 218 LLSAMTAVSGFGLSKLYLVDAGWPLEW------IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLW 291 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333333344445566667778999988 8988877654 556778999999999999999887766553332222
Q ss_pred hh------hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccc-cchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCC
Q 018727 130 GL------SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP 201 (351)
Q Consensus 130 ~~------~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 201 (351)
.. .++...++....+.+++.+...+ ....+.+..++ +++++.+++.+...++|..++|.++|.+.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~------ 365 (390)
T TIGR02718 292 FAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD------ 365 (390)
T ss_pred HHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 11 12333334444455555555544 46666666665 889999999999999999999999999998
Q ss_pred CcccccccccCccchhHHHHHHHHHHHHH
Q 018727 202 NLFSSESLFGKFPYFLPCLCISLFAFGVT 230 (351)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~ 230 (351)
..+|...+...+++.++.+
T Consensus 366 ----------~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 366 ----------RFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred ----------HHccHHHHHHHHHHHHHHH
Confidence 4455555566655554443
No 170
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.28 E-value=7.4e-11 Score=109.05 Aligned_cols=176 Identities=12% Similarity=0.041 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 121 (351)
++......++.....+....+.|.+.++ .|.+..+ .++....+.++..++.++.|+++||+++++....+..+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~ 326 (438)
T TIGR00712 253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFF 326 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHH
Confidence 3333333344444444556677766655 6888887 88888889899999999999999999654322222222
Q ss_pred H---HHHHHHhhh--hhhHHHHHHHHHHhhhhcccc-hhHHHHHhhhccccchhhhHhHHHHHHHhH-HHHHHHhhhhhc
Q 018727 122 V---VIFNTLFGL--SVNFWMAVLTRFLLGSLNGLL-GPIKAYACEIFREEHQALGLSTVSTAWGIG-LIIGPALGGFLA 194 (351)
Q Consensus 122 ~---~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~l~ 194 (351)
. .++.+.... ..+.+......++.|++.... ........|.+|+++|++++|+.+....+| .+++|.+.|.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~ 406 (438)
T TIGR00712 327 MTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 406 (438)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHH
Confidence 1 112221111 123333333334445432221 222456779999999999999998887776 578999999999
Q ss_pred CCCCCCCCcccccccccCccchhHHHHHHHHHHH-HHHHHhcccccc
Q 018727 195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETL 240 (351)
Q Consensus 195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~ 240 (351)
+ ..+|...+.+..+..++ .+...+.+||.+
T Consensus 407 ~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 407 D----------------FFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred H----------------hccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8 33344444444443333 334455566654
No 171
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.28 E-value=9.1e-11 Score=107.37 Aligned_cols=127 Identities=13% Similarity=0.010 Sum_probs=97.7
Q ss_pred hhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh-----hhH
Q 018727 62 PFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VNF 135 (351)
Q Consensus 62 ~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~ 135 (351)
...|.+ .+++|.++.+ .++......++..++.++.|+++||+|+|+.+.++.++..++..+.... ++.
T Consensus 236 ~~~p~~~~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 309 (406)
T PRK15402 236 ALSPVILISGEQLSSYE------YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAY 309 (406)
T ss_pred HHhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccH
Confidence 344544 4567888777 8887777778888999999999999999999988887777666655442 345
Q ss_pred HHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 136 ~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+.+++..++.|++.+...+. ..... ..++++||++.+.++....+|..+|+.+++.+.+
T Consensus 310 ~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 310 LWLTAGLSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66677778888887765543 44443 3345889999999999999999999999999987
No 172
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.28 E-value=1.1e-10 Score=104.94 Aligned_cols=150 Identities=11% Similarity=0.030 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-cChHHHHHHHH
Q 018727 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTA 120 (351)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~ 120 (351)
.++.......+..........++|.+.++.|.+..+ .+.+.+...++..+++++.|++.||+ +||+.+.++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~------~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~ 271 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAAT------AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAV 271 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Confidence 333333333444444455667788888888988888 99999999999999999999999999 56667777777
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhc-cccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 198 (351)
+.+++.+...+..+..... ..++.|++.+...+. ...+.+.. ++++++...++.+....+|..++|.+.|.+.+..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 272 LQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777766565544332222 346778887776664 56655544 45677899999888889999999999999998433
No 173
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.28 E-value=4.7e-11 Score=110.86 Aligned_cols=176 Identities=15% Similarity=0.225 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc--ChHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMG 118 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~ 118 (351)
+.++.+.+...+..++.......+|.+.++.+.+..+ .+.+.++..+...++.+..|+++|+.. ++.+..++
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~------aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ 371 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSND------AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLT 371 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh------hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHH
Confidence 3444556666667777778888889999999999999 999999999999999999999999988 45567777
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727 119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 197 (351)
+++.+++.+.++++++++.+....++.|++.|.+... ..++.|..+.++-..+.|+...+.+++.++||+++|.+.+.+
T Consensus 372 ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t 451 (509)
T KOG2504|consen 372 LLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT 451 (509)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc
Confidence 8888888888999999999999999999999888886 678999999999999999999999999999999999998844
Q ss_pred CCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccc
Q 018727 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP 237 (351)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (351)
++ |...++.+++..++...+++..+
T Consensus 452 g~---------------Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 452 GN---------------YDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred CC---------------eeeehhhcChHHHHHHHHHHHhH
Confidence 33 34455666666666666666666
No 174
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.27 E-value=3.5e-11 Score=108.60 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcC-hHH-HHHH-
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPV-IIMG- 118 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~-~~~~- 118 (351)
++.+.+..++..........+.|.+. +++|.+..+ .++..+...++..++.++.|+++||.++ |+. +...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~ 291 (379)
T TIGR00881 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEK------ASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFF 291 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHH
Confidence 33444444444445555566666554 557888888 8999999999999999999999998643 332 2221
Q ss_pred HHHHHHHHHHhhh--hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 119 TASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 119 ~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
.....++...... ..+.....+..++.|+......+ ...+..|.+|+++|+++.++.+....+|..++|.+.|.+.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 371 (379)
T TIGR00881 292 MALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD 371 (379)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 1222222222222 23444555556666764333333 47788999999999999999999999999999999999998
No 175
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.26 E-value=2.9e-10 Score=103.59 Aligned_cols=125 Identities=11% Similarity=0.004 Sum_probs=96.8
Q ss_pred HHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 018727 64 LYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143 (351)
Q Consensus 64 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 143 (351)
.|.+.+++|++..+ .+++.....++..++.++.+++.||.+++..+....+......++....++.+.+.+..+
T Consensus 240 ~p~~~~~~g~s~~~------~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 313 (394)
T PRK10213 240 RPVYMNLAGFGVDG------LTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAI 313 (394)
T ss_pred HHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 36777788999888 899999999999999999999999965444344333334444444445667777778888
Q ss_pred HhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 144 l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+.|++.+...+. .+++.+..| +++++..+.......+|..+||.++|.+.+
T Consensus 314 l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~ 365 (394)
T PRK10213 314 IWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALD 365 (394)
T ss_pred HHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899888777775 778888887 556777788888889999999999999998
No 176
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.25 E-value=1.2e-10 Score=102.10 Aligned_cols=163 Identities=14% Similarity=0.175 Sum_probs=126.8
Q ss_pred cccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhh
Q 018727 56 PISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN 134 (351)
Q Consensus 56 ~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
+.+.+...-..+. .++|++..+ ..++.....+..+++++++|+|.||+|.|+++.++.++..+.++..-+...
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~------lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~ 340 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTE------LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG 340 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc
Confidence 3333333434444 489999998 888888999999999999999999999999999998888887776666655
Q ss_pred HHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCc
Q 018727 135 FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF 213 (351)
Q Consensus 135 ~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~ 213 (351)
...+++.-.+.|+..|.... +-++.++..|+++-++.+|+++.....++.+||.+-+.+.+.+++.
T Consensus 341 ~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~------------- 407 (438)
T COG2270 341 ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS------------- 407 (438)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch-------------
Confidence 56666777888988777666 5999999999999999999999999999999999999998854432
Q ss_pred cchhHHHHHHHHHHHHHHHHhccccc
Q 018727 214 PYFLPCLCISLFAFGVTIAAFWLPET 239 (351)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~e~ 239 (351)
|.-+....++..+.++...++|++
T Consensus 408 --r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 408 --RAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred --hhHHHHHHHHHHhhHhhEEeecCC
Confidence 222344444444555566666665
No 177
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.24 E-value=4.5e-10 Score=98.73 Aligned_cols=233 Identities=15% Similarity=0.100 Sum_probs=145.2
Q ss_pred HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc-----ChHHHH-HHHHHHHHHHHHhhh-----hh--
Q 018727 67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVII-MGTASVVIFNTLFGL-----SV-- 133 (351)
Q Consensus 67 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~~~-~~~~~~~~~~~~~~~-----~~-- 133 (351)
+..|++++..- .+.+.+...+. ....+.+|..||+.+ ||..++ .+.++...+..+.++ ..
T Consensus 6 MIvEL~vpA~l------v~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~ 78 (403)
T PF03209_consen 6 MIVELGVPAWL------VALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESG 78 (403)
T ss_pred HHHHhccHHHH------HHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 45567777666 77777777654 567899999999998 775554 445555554444333 12
Q ss_pred -----hH--H--HHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCc
Q 018727 134 -----NF--W--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL 203 (351)
Q Consensus 134 -----~~--~--~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 203 (351)
+. + ...+...+.|+|.+...+. .++++|..|+|+|+++.++...+..+|.+++..+.+.+.+..
T Consensus 79 ~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~------ 152 (403)
T PF03209_consen 79 QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF------ 152 (403)
T ss_pred cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc------
Confidence 11 2 2334456678887776665 999999999999999999999999999999999999998721
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccc
Q 018727 204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283 (351)
Q Consensus 204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (351)
+- ......+....+..++..++..+-.|++.....+.++++ +......++++..+|+
T Consensus 153 -s~------~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~----------------~~~f~~a~~~~~~~~~ 209 (403)
T PF03209_consen 153 -SP------ERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERP----------------RPPFREAWRQVWASPQ 209 (403)
T ss_pred -CH------HHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCC----------------CccHHHHHHHHHhCCC
Confidence 10 001111122222222222333333444333222111000 1122335667778888
Q ss_pred hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI 340 (351)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~ 340 (351)
..++.+..++.....+.-...+-.|-.+. +|++..+..-+....+.+..++-
T Consensus 210 a~~f~~fl~l~t~a~~~QD~iLEPygg~V-----fgmsv~eTT~Lta~~~~G~L~G~ 261 (403)
T PF03209_consen 210 ARRFFVFLFLGTLAFFMQDVILEPYGGEV-----FGMSVGETTRLTAFWGGGTLLGM 261 (403)
T ss_pred hhHHHHHHHHHHHHHHhhHHHcCCchhHH-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 88877776666655555554444455444 89999999888888777776644
No 178
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.23 E-value=1.5e-10 Score=106.13 Aligned_cols=147 Identities=12% Similarity=0.132 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHhh--cccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHH-HHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIKDF--QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV-IIMGT 119 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~ 119 (351)
++......++.....+....++|.+.+++ +.+..+ .+...+...++..++.++.|+++||++||+. +....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~------~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~ 317 (412)
T TIGR02332 244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIM------IGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPY 317 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------hHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHH
Confidence 33444455555556666778888888875 456666 7888899999999999999999999997774 33333
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
++..++..+.....+....+.+-.+.+++.....+. .....|.+|+++|++++|+.+....+|++++|.+.+.+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~ 394 (412)
T TIGR02332 318 LFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKD 394 (412)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence 333333322222222222222222222332222222 4555788999999999999999999999999999999988
No 179
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.22 E-value=1e-09 Score=91.83 Aligned_cols=134 Identities=13% Similarity=0.186 Sum_probs=106.5
Q ss_pred hccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh-
Q 018727 54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS- 132 (351)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~- 132 (351)
....+....+-|.+.+++|++.+| ...+.++..+|..+ .++.|.+.|++|++.++.++.+...++..+...+
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~------l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~ 87 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGYSQSQ------LNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAV 87 (250)
T ss_pred cCcccchhhhhHHHHHHhCCCHHH------HHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777778999999999999 99999999999876 5889999999999999999999999988766542
Q ss_pred ------hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 133 ------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 133 ------~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
.++|.+.+..++.|.+.+.+.++ .....+.|| ++||++.|+.-...++++.+-..+...+.+
T Consensus 88 ~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 88 SGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred hCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 35667766666766766655553 566668898 579999999988889888887777666654
No 180
>PRK10054 putative transporter; Provisional
Probab=99.22 E-value=1.2e-10 Score=105.98 Aligned_cols=111 Identities=16% Similarity=0.033 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHhhhhcccchhH-HHHHhh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACE 161 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~ 161 (351)
.+.+.+...+.....+++.|.+.||+++|+.+..+..+..++....... ++.+.+.+..++.|++.+...+. ...+.+
T Consensus 246 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~ 325 (395)
T PRK10054 246 VAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDH 325 (395)
T ss_pred HHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6777777777777778899999999999999998888888777666654 56666777788888887776665 788999
Q ss_pred hccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 162 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
..|++.|+++.+..+ ...+|..+||.++|.+.+
T Consensus 326 ~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~ 358 (395)
T PRK10054 326 IAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT 358 (395)
T ss_pred hCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999988765 566899999999999998
No 181
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.21 E-value=5e-10 Score=98.33 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHh---hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKD---FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 117 (351)
+.++...+..++..........+.+.+.++ +|+++.+ .++..+.+..+..++.++.+++.||+|+|+++.+
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~------a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~ 213 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQ------AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAF 213 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 444444455555555666677777776653 5888888 9999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+..+..++.++....++...+ ..-++.|++.+...|. .+...+..|++ .+++.++. .+..+|+++.|.+.|.+.+
T Consensus 214 ~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad 289 (310)
T TIGR01272 214 NAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLAD 289 (310)
T ss_pred HHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence 887777776655554443332 3455778887777765 77777777754 45566665 5677999999999999988
No 182
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.21 E-value=2.9e-10 Score=105.98 Aligned_cols=177 Identities=17% Similarity=0.189 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHH-----
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV----- 114 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~----- 114 (351)
+.++.+++..+......+....++|.+. +.+|.+..+ .+++.++..++..++.++.|+++||+++|+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~ 334 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKE------NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTA 334 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 3455556666666666666677788665 557888888 8999999999999999999999999875421
Q ss_pred ---HHHHHHHH--HHHHHHhhh-hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHH
Q 018727 115 ---IIMGTASV--VIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP 187 (351)
Q Consensus 115 ---~~~~~~~~--~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 187 (351)
+..+.... .+..+.... ..+....++.-.+.+.+.+...+. .....|..|. .+|.+.++.+....+|+.++|
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p 413 (465)
T TIGR00894 335 ARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIAS 413 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 111111111 223333333444444444433333 4455566665 899999999999999999999
Q ss_pred HhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccc
Q 018727 188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP 237 (351)
Q Consensus 188 ~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (351)
.+.+.+.+.. + ...|...+.+.++..++..+.....+
T Consensus 414 ~l~g~~~~~~-------~------~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 414 TLAGNILSQD-------S------KNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred HhhheeeCCC-------C------chHHHHHHHHHHHHHHHHHHHeeeee
Confidence 9999887621 0 12356666776666666555544443
No 183
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.20 E-value=3.5e-10 Score=102.44 Aligned_cols=148 Identities=17% Similarity=0.269 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHHHhhc-ccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQ-IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
++....+..++.......+..+.+.+.++.| .+... .+.+.++..++-.+.-.+.+++..|+|.|+++.++.+
T Consensus 208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~------~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~ 281 (400)
T PF03825_consen 208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGST------IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALV 281 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3444445556666666777777787888887 56666 7777777778888899999999999999999999999
Q ss_pred HHHHHHHHhhhh-hhHHHHHHH----HHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHH-HHHhHHHHHHHhhhhh
Q 018727 121 SVVIFNTLFGLS-VNFWMAVLT----RFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFL 193 (351)
Q Consensus 121 ~~~~~~~~~~~~-~~~~~l~~~----r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l 193 (351)
..++=..+++.. ++.+...+. ..+.|+..+.+... ..++.+.+|++.|+++.++++. ..++|..+|..++|++
T Consensus 282 ~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l 361 (400)
T PF03825_consen 282 AYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWL 361 (400)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 988888888776 444443333 34689888877765 8999999999999999999865 5689999999999999
Q ss_pred cC
Q 018727 194 AQ 195 (351)
Q Consensus 194 ~~ 195 (351)
.+
T Consensus 362 ~~ 363 (400)
T PF03825_consen 362 YD 363 (400)
T ss_pred HH
Confidence 98
No 184
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.20 E-value=6.4e-09 Score=96.16 Aligned_cols=235 Identities=17% Similarity=0.110 Sum_probs=153.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH-HHHHHHHHHHhhhh-hh-HHHHHHHHHHhhhhcccchhH-HHHH
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG-TASVVIFNTLFGLS-VN-FWMAVLTRFLLGSLNGLLGPI-KAYA 159 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~-~~~~~~~~~~~~~~-~~-~~~l~~~r~l~G~~~g~~~~~-~~~~ 159 (351)
.++..++..+..++..|+.|.++|+-|+||.++.. ..+..++..++.+. ++ ++...+..++.-++.+...+. .+++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888888899999999999999987765544 44444455554442 33 333333334444455555554 8999
Q ss_pred hhhccccch--------------------------hhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCc
Q 018727 160 CEIFREEHQ--------------------------ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF 213 (351)
Q Consensus 160 ~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~ 213 (351)
.|+.+++++ ++..+.-...+.+|+++.-.+.-.+....+.. . =+..
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~-------~-~~~~ 223 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST-------A-SNTW 223 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-------c-ccch
Confidence 999999888 88888888888888888877765554322111 0 0023
Q ss_pred cchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHH
Q 018727 214 PYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC 292 (351)
Q Consensus 214 ~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (351)
+.|..+.+.++..++. +...+++||.++.+..+..... .... -.+.....+++.|.|.+...++.++
T Consensus 224 ~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~-~~~g-----------~~~l~~t~k~~~~~~~~~~fLia~~ 291 (477)
T PF11700_consen 224 AIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSY-LRFG-----------FKRLWRTFKEIRKLRQLFLFLIAYF 291 (477)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhH-HHHH-----------HHHHHHHHHHHHhChHHHHHHHHHH
Confidence 3466566665555443 4456667776653211111100 0000 0111224456667888999999999
Q ss_pred HHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 293 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
++.-.......+...|..+. +|++..+...+.....+..+++.+..
T Consensus 292 l~~dg~~ti~~~~~i~a~~~-----lg~s~~~l~~~~l~~~i~a~~Ga~~~ 337 (477)
T PF11700_consen 292 LYSDGVNTIISFAGIYATEV-----LGMSTTQLIVFGLVVQIVAIIGALLF 337 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----cCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877 89999998888887777777766554
No 185
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.18 E-value=4.7e-10 Score=101.81 Aligned_cols=123 Identities=13% Similarity=0.119 Sum_probs=89.3
Q ss_pred HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHH
Q 018727 65 YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-SVNFWMAVLTRF 143 (351)
Q Consensus 65 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~ 143 (351)
|.+.+.+|.++.+ .+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..+
T Consensus 224 ~~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 297 (382)
T PRK10091 224 PYMMFISGFSETS------MTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAF 297 (382)
T ss_pred HHHHHhcCCCHHH------HHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4555567888888 999999999999999999999999999999998888777777655433 445555555555
Q ss_pred Hhhhhccc-chhHH-HHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 144 LLGSLNGL-LGPIK-AYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 144 l~G~~~g~-~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+.+++... ..+.. ....+..+++.++.+ ..+....+|..+||.++|.+.+
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~ 349 (382)
T PRK10091 298 ICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLT 349 (382)
T ss_pred HHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHH
Confidence 66665333 33333 344444455555544 3466788999999999999987
No 186
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.17 E-value=2.5e-10 Score=100.09 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
.++.|.+++.++......-.....+| ++.++|+.++.+ .+.+...+.+...+..+.+|+++||+|.+|++.+.
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~------Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~ 290 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT------AGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAV 290 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------HHHHHHHHHHHHHHHHhccchhhhhccchhHHHHH
Confidence 45566677777776666666777777 456679999998 99999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhh-------hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727 119 TASVVIFNTLFGLS-------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG 190 (351)
Q Consensus 119 ~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 190 (351)
...++++..+.+.. .+....++..+..++..|.-.. +..++..++|+ +-|.+.|+...++++|+..-|...
T Consensus 291 f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~ 369 (417)
T COG2223 291 FVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAF 369 (417)
T ss_pred HHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHH
Confidence 88888777666654 3344444433334443333222 35666666665 678899999999999999999999
Q ss_pred hhhcCCC
Q 018727 191 GFLAQPA 197 (351)
Q Consensus 191 ~~l~~~~ 197 (351)
+...+.+
T Consensus 370 g~~~~~t 376 (417)
T COG2223 370 GVSLDLT 376 (417)
T ss_pred HHHHHhc
Confidence 9998844
No 187
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.16 E-value=3.8e-10 Score=102.99 Aligned_cols=130 Identities=12% Similarity=0.053 Sum_probs=100.6
Q ss_pred hhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh-hhcChHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 018727 61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV 139 (351)
Q Consensus 61 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 139 (351)
...+|.+.++.+.++.+ .+++.+...++...+..+.+++.| |++.++.+..+..+.+++.++.+..++++.+.
T Consensus 228 ~~~~p~~~~~~~~~~~~------~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 301 (400)
T PRK11646 228 MLMLPIMVNDIAGSPSA------VKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLF 301 (400)
T ss_pred HHhhhhhHHhhcCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34567766665556666 787777776666655555566665 56767777777777777777777778877777
Q ss_pred HHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727 140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (351)
Q Consensus 140 ~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 196 (351)
+..++.+++.+...+. .+++.|..|+++||+++++.+....+|..+||.++|.+.+.
T Consensus 302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 7777778877666664 88999999999999999999999999999999999999874
No 188
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.15 E-value=1.7e-09 Score=97.43 Aligned_cols=144 Identities=12% Similarity=0.049 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcCh---HHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK---PVIIM 117 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr---~~~~~ 117 (351)
+.++.+++..++.....+....++|.+.++.|.+. . .+...++..+...++ .++++||.+|| +....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~-~------~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~ 261 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRPAGLED-I------AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIR 261 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCh-H------HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHH
Confidence 44566666677777777777888998888877654 3 444455554444444 47788887653 33232
Q ss_pred -HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727 118 -GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (351)
Q Consensus 118 -~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (351)
..++.++.....+...+....++.-.+.+++.....+ ..++.+|.+|++.|+++.|+.+....+|++++|.+.+.+.
T Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 262 AAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444444555555444444 5789999999999999999999999999999999988776
No 189
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.14 E-value=3.8e-10 Score=105.74 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=112.9
Q ss_pred HHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHH
Q 018727 47 WIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 125 (351)
.+..++..+........+|.+.+ .+|.+..+ .++......++..++.++.|++.||+|||+++.++..+.+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~ 334 (485)
T TIGR00711 261 CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQ------AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVG 334 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34444444444445556676654 47888888 899999999999999999999999999999999988888877
Q ss_pred HHHhhh----hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 126 NTLFGL----SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 126 ~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
..+... ..+.+.+....++.|++.+...+ ......+..|+++|+++.++.+....+|+.+|+.+.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 335 FYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766652 23456666777888998777654 46667788899999999999999999999999999988875
No 190
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.14 E-value=5.5e-10 Score=100.33 Aligned_cols=132 Identities=15% Similarity=0.128 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHH-HHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 121 (351)
++...+..++.....+......|.+.+++|.+..+ .+.+..+.. ++..++.+++|++.||+|||+.+..+.++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~------~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~ 284 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEE------IALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIV 284 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33334444444555556667777777778888888 887777655 57789999999999999999998888877
Q ss_pred HHHHHHHhhhh-----------hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHH
Q 018727 122 VVIFNTLFGLS-----------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG 180 (351)
Q Consensus 122 ~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~ 180 (351)
.+++..+..+. ++.+.+..+.++.+++.+...+. .+++.|.+|+++||+.+++.+...+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 285 QALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 77766544432 34566777788889988877775 9999999999999999999877654
No 191
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.14 E-value=2.7e-09 Score=88.68 Aligned_cols=151 Identities=21% Similarity=0.285 Sum_probs=109.1
Q ss_pred chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
|.+.+..++..+-...+......+. .+.++||+|... .+.+.+....-.++.+++.|.++||+|++...+.+
T Consensus 265 pfw~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~------a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~ 336 (459)
T KOG4686|consen 265 PFWVLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVS------AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVAS 336 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhh------ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHH
Confidence 3344444454444444444433332 478889999988 88888877777789999999999999999877766
Q ss_pred HHHHHH-HHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727 119 TASVVI-FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (351)
Q Consensus 119 ~~~~~~-~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 196 (351)
..+..+ +-....++ .+.=+....+.|+........ +..++...|+++-|++.|..+...++|-.+.|+++|.+.+.
T Consensus 337 a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 337 ACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG 414 (459)
T ss_pred HHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence 544443 33333332 222244556677776666664 88889999999999999999999999999999999999986
Q ss_pred CCC
Q 018727 197 AEK 199 (351)
Q Consensus 197 ~~~ 199 (351)
.++
T Consensus 415 ~g~ 417 (459)
T KOG4686|consen 415 DGS 417 (459)
T ss_pred CCc
Confidence 553
No 192
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.11 E-value=9.4e-10 Score=100.52 Aligned_cols=150 Identities=19% Similarity=0.143 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
+..+.+++.+++....+......+|++.++ ..+... ......+..+...+..+++|+++||+|+|+++.++.+
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~------~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i 324 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVN------ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFI 324 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHH------HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHH
Confidence 345556666666555555566677766655 233222 2222334456778899999999999999999998887
Q ss_pred HHHHHHHHhh--hh----hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccc---------------------cchhhhH
Q 018727 121 SVVIFNTLFG--LS----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFRE---------------------EHQALGL 172 (351)
Q Consensus 121 ~~~~~~~~~~--~~----~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~---------------------~~r~~~~ 172 (351)
...++..... .. .+++.+.+..+...++.|.-.. ...++.+.+|+ ++-|.+.
T Consensus 325 ~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 404 (462)
T PRK15034 325 FMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAAL 404 (462)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHH
Confidence 6666653221 11 2455555554444444444333 36666666664 2567888
Q ss_pred hHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727 173 STVSTAWGIGLIIGPALGGFLAQPA 197 (351)
Q Consensus 173 ~~~~~~~~~g~~~~~~~~~~l~~~~ 197 (351)
|+......+|+.+-|.+.+...+.+
T Consensus 405 G~v~a~G~~Ggf~~p~~~g~~~~~~ 429 (462)
T PRK15034 405 GFISAIGAVGGFFIPQAFGMSLNMT 429 (462)
T ss_pred HHHHHHHHcccchhhHHHHHHHHHc
Confidence 8999999999999998888887643
No 193
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.11 E-value=2.4e-09 Score=97.89 Aligned_cols=148 Identities=14% Similarity=0.166 Sum_probs=97.0
Q ss_pred HHHHHhhcccccccchhhhhHHHHHHHH-HHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh---hhh-hhHHHHH
Q 018727 65 YFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV 139 (351)
Q Consensus 65 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~ 139 (351)
+.+.+++|.+..+ .+++..... ++..++.+++|++.||+|+|+.+.++..+..+..+.. +.. ++.+.++
T Consensus 234 ~~l~~~~G~~~~~------~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 307 (402)
T PRK11902 234 TFLIRGAGFSAGE------VGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMA 307 (402)
T ss_pred HHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4566778998888 888876544 4678999999999999999998877766655544322 333 3555555
Q ss_pred HHHHH----hhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCcc
Q 018727 140 LTRFL----LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP 214 (351)
Q Consensus 140 ~~r~l----~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~ 214 (351)
+.-++ .|++.+...+. ..++.+.+|.++ .++.+...++|..+++.++|.+.+ .++
T Consensus 308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~----------------~~G 367 (402)
T PRK11902 308 LAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVE----------------AYG 367 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHH----------------HhC
Confidence 54443 33444444443 667777777554 455555567777767778999988 555
Q ss_pred chhHHHHHHHHHHHHHHHHhcccc
Q 018727 215 YFLPCLCISLFAFGVTIAAFWLPE 238 (351)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~e 238 (351)
|+..+...++++++.++.....+.
T Consensus 368 ~~~~f~~~~~~~~~~~~~~~~~~~ 391 (402)
T PRK11902 368 WPGFYLMTVVIALPGLALLWLMRG 391 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666667776666665555544443
No 194
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.10 E-value=2.9e-09 Score=98.12 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
+.+..+....++..+.........+++.++.--++.. .+.+..+..++..++.+++++++||+|+|+++..+.+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~------~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~ 298 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGL------ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLL 298 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchh------hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHH
Confidence 4455566666666777777777777776664223345 6777888899999999999999999999999999999
Q ss_pred HHHHHHHHhhhhh--hHHHHHHHHHHhhhhcccchhH-HHHHhhhccc-------cchhhhHhHHHHHHHhHHHHHHHhh
Q 018727 121 SVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-------EHQALGLSTVSTAWGIGLIIGPALG 190 (351)
Q Consensus 121 ~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~ 190 (351)
+.+++.++..+.+ +.+.+++..++.|++.+...+. .++++|..+. ++.|..++..+....+|..+++.+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~ 378 (428)
T PF13347_consen 299 LAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV 378 (428)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999988887775 8899999999999998887765 8889888863 4468888999999999999999999
Q ss_pred hhhcC
Q 018727 191 GFLAQ 195 (351)
Q Consensus 191 ~~l~~ 195 (351)
+.+.+
T Consensus 379 g~~l~ 383 (428)
T PF13347_consen 379 GLLLA 383 (428)
T ss_pred HHHHH
Confidence 98876
No 195
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.10 E-value=4.2e-10 Score=100.57 Aligned_cols=135 Identities=21% Similarity=0.256 Sum_probs=107.0
Q ss_pred HHHHHHhhccccchhhhHHHH-HHhhccc-ccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 47 WIIVLCTALPISSLFPFLYFM-IKDFQIA-KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
....+...+.........|.+ .+++|.+ ..+ .+.+.+...+...++.++.|+++||+|+|+..........+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 285 (352)
T PF07690_consen 212 LIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQ------AGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLIL 285 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhcccchhhhhccCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 333334444555567777776 7888988 567 88889999999999999999999999998887777766666
Q ss_pred HHHHhhhh---hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHH
Q 018727 125 FNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP 187 (351)
Q Consensus 125 ~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 187 (351)
..+..... ++....++..++.|++.+...+. ..++.|.+|+++|+++.++.+...++|..+||
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 286 GALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 66555443 34566667778889987776665 99999999999999999999999999999987
No 196
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.09 E-value=1.8e-09 Score=97.94 Aligned_cols=123 Identities=19% Similarity=0.251 Sum_probs=89.8
Q ss_pred hhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh-----hh
Q 018727 61 FPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VN 134 (351)
Q Consensus 61 ~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~ 134 (351)
....|.+ .+++|.++.+ .+++.+...++..++.++.|++.||+|||+.+..+..+..++..+.... ++
T Consensus 226 ~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (385)
T TIGR00710 226 FSGAPFVYIDIMGVSPSV------FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGS 299 (385)
T ss_pred HHcChHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3344544 4578888888 8999999999999999999999999999999888877777666555432 23
Q ss_pred HHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHH-hHHHHHHHhh
Q 018727 135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALG 190 (351)
Q Consensus 135 ~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~ 190 (351)
...++...++.|++.+...+. .....|..| ++|+++.++.+.... +|.+.+|.++
T Consensus 300 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 300 WAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566778877666554 777788876 578999998876665 4555555544
No 197
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.08 E-value=1.4e-09 Score=102.13 Aligned_cols=142 Identities=17% Similarity=0.131 Sum_probs=111.0
Q ss_pred HHHHHhhccccchhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHH
Q 018727 48 IIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 126 (351)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 126 (351)
+..+...........+.|.+ ++.+|.++.+ .++......++..++.++.|++.||+|+|+.+..+.++..++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~------ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~ 339 (495)
T PRK14995 266 VMAMTAMITLVGFELLMAQELQFVHGLSPLE------AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSF 339 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 33333333444444555644 4457899888 9999999999999999999999999999999988888777776
Q ss_pred HHhhh---hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 127 TLFGL---SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 127 ~~~~~---~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
.+... .++.+......++.|++.|...+ ....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus 340 ~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 340 YGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433 24555666677888998877665 47778888999999999999999999999999999987765
No 198
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.08 E-value=2e-09 Score=111.38 Aligned_cols=130 Identities=14% Similarity=0.132 Sum_probs=109.6
Q ss_pred chhhhHH-HHHHhhccccc-ccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHH
Q 018727 59 SLFPFLY-FMIKDFQIAKR-EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW 136 (351)
Q Consensus 59 ~~~~~~~-~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 136 (351)
.....+| ++.+.+|.+.. + .+++.+...++.+++.++.|+++||+++++++.++.++.+++.++.....+.+
T Consensus 250 ~~~~~~~~~~~~~~g~s~~~~------~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1146)
T PRK08633 250 LAQANFPAYAKEVLGLDNTFQ------VQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLA 323 (1146)
T ss_pred HHHHhhHHHHHHHhCCCcHHH------HHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHH
Confidence 3444455 44566888887 7 89999999999999999999999999999998888888888887777777888
Q ss_pred HHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727 137 MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (351)
Q Consensus 137 ~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (351)
.+++..++.|++.+...+ ..+++.+..|++.||+++++.+....+|.++++.+++.+.
T Consensus 324 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 324 SVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889998777665 4889999999999999999999999999988888877664
No 199
>PRK09848 glucuronide transporter; Provisional
Probab=99.06 E-value=9.4e-10 Score=102.05 Aligned_cols=148 Identities=16% Similarity=0.139 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 42 ELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
.+....+..++............|++.+ .+|.+... .++......++..++.++.+++.||+|+|+++.++.+
T Consensus 229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~ 302 (448)
T PRK09848 229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLF------TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGAL 302 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3333333334333333334444454443 34554433 4444444456778899999999999999999999988
Q ss_pred HHHHHHHHhhhh--hhHHHHHHHHHHhhhhcccchhH-HHHHhhhcccc-------chhhhHhHHHHHHHhHHHHHHHhh
Q 018727 121 SVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE-------HQALGLSTVSTAWGIGLIIGPALG 190 (351)
Q Consensus 121 ~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~ 190 (351)
+..++.++..+. .+.+.+++..++.|+|.+...+. .++.+|..|.+ ++|...++.+....+|..+++.+.
T Consensus 303 ~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~ 382 (448)
T PRK09848 303 LGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382 (448)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 888777666554 35666667777888887776664 88888887653 458899999999999999999999
Q ss_pred hhhcC
Q 018727 191 GFLAQ 195 (351)
Q Consensus 191 ~~l~~ 195 (351)
+.+.+
T Consensus 383 g~~l~ 387 (448)
T PRK09848 383 AFILG 387 (448)
T ss_pred HHHHH
Confidence 98876
No 200
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.06 E-value=1.7e-09 Score=111.71 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 121 (351)
++.+.+..++..+....+..++|.+.+ .+|.+..+ .+++.+.+.++.+++.++.|+++|+.++++.+..+.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~ 300 (1140)
T PRK06814 227 IWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENV------ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALL 300 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHH------HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHH
Confidence 333344444444444445556666554 47888888 99999999999999999999999988877766666555
Q ss_pred HHHHHHHhhhh--------------------hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHH
Q 018727 122 VVIFNTLFGLS--------------------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWG 180 (351)
Q Consensus 122 ~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~ 180 (351)
.+++.+..++. .+.+.+++..++.|++.+...+ ..+++.+.+|++.||+++|..++...
T Consensus 301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~ 380 (1140)
T PRK06814 301 MGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNA 380 (1140)
T ss_pred HHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHH
Confidence 55544433332 5667777788888988877766 59999999999999999999999999
Q ss_pred hHHHHHHHhhhhhcC
Q 018727 181 IGLIIGPALGGFLAQ 195 (351)
Q Consensus 181 ~g~~~~~~~~~~l~~ 195 (351)
+|..+++++.+.+..
T Consensus 381 ~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 381 AFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
No 201
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.05 E-value=3.7e-09 Score=94.53 Aligned_cols=142 Identities=25% Similarity=0.278 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI 162 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~ 162 (351)
.|.+.+...+..++.-.+..++.+|+|.|+.++++..+..+=.++++++++.+.+.+.+.+.|+-.+.... +.-|+++.
T Consensus 261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~ 340 (412)
T PF01306_consen 261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH 340 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999998777666 49999999
Q ss_pred ccccchhhhHhHH-HHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhcccccc
Q 018727 163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETL 240 (351)
Q Consensus 163 ~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~ 240 (351)
+|+|..++...+. +.+.++|.++.+.++|.+.| +.|++..+.+.+.+.++. ++..+.+++++
T Consensus 341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd----------------~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD----------------RIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh----------------hcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 9999988888874 78999999999999999999 667776666666555544 44455555544
Q ss_pred c
Q 018727 241 H 241 (351)
Q Consensus 241 ~ 241 (351)
+
T Consensus 405 ~ 405 (412)
T PF01306_consen 405 K 405 (412)
T ss_dssp S
T ss_pred c
Confidence 3
No 202
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.04 E-value=4.7e-09 Score=95.60 Aligned_cols=119 Identities=12% Similarity=0.049 Sum_probs=78.9
Q ss_pred HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018727 67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG 146 (351)
Q Consensus 67 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 146 (351)
+.+++|.+..+ .+.+.+...++..++.++.+++.||+|||+++.++..+..++.++....++.+.....-.+.+
T Consensus 230 ~~~~~g~~~~~------~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (392)
T PRK10473 230 LMEQMGFSRGE------YAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLIC 303 (392)
T ss_pred HHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888877 888888889999999999999999999999999998888887777766655544344334433
Q ss_pred hhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 147 SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 147 ~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
.+.+...+ .....+..|.++|+ +.......++..+++.+++.+.+
T Consensus 304 ~g~~~~~~-~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 304 AGFSVGFG-VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred HHHHHHhH-HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322221 12233444544443 33334455666666666666665
No 203
>PRK11043 putative transporter; Provisional
Probab=99.02 E-value=1.4e-08 Score=92.75 Aligned_cols=129 Identities=11% Similarity=0.036 Sum_probs=93.0
Q ss_pred hhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh---hh--hhh
Q 018727 60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GL--SVN 134 (351)
Q Consensus 60 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~--~~~ 134 (351)
.....|.+.+++|.+..+ .++......++..++.++.+++.||+|+|+.+.....+.+++.+.. .. .++
T Consensus 222 ~~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (401)
T PRK11043 222 WLTGSPFILEQMGYSPAD------IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPS 295 (401)
T ss_pred HHHHhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 344567777788888887 8887777788888999999999999999987655544444333221 11 234
Q ss_pred HHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 135 ~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
.+.+++...+.|++.+...+. .....|..| ++|+++.++++.....+..+++.+.+.+.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 296 LVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 455555556677776665554 666667766 579999999998888888888888888876
No 204
>PRK10133 L-fucose transporter; Provisional
Probab=99.00 E-value=6e-09 Score=96.17 Aligned_cols=126 Identities=11% Similarity=0.062 Sum_probs=95.8
Q ss_pred hhhHHHH-H-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 018727 61 FPFLYFM-I-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA 138 (351)
Q Consensus 61 ~~~~~~~-~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 138 (351)
..+.+.+ . +.+|.++.+ .++....+.++..++.++.|++.||+|+|+++..+.++..++.++..+.++.. .
T Consensus 278 ~~~~~~~l~~~~~g~s~~~------ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~ 350 (438)
T PRK10133 278 WSYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-G 350 (438)
T ss_pred HHHHHHHHhhhcCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-H
Confidence 3444433 3 457999988 99999999999999999999999999999999888777766665555544432 2
Q ss_pred HHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 139 ~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+....+.|++.+...|. .....|.+|++ .+.+.++... ..+|+.++|.+.|.+.+
T Consensus 351 ~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~ 406 (438)
T PRK10133 351 LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSD 406 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHH
Confidence 44566788888887774 88888887753 5677777754 44788888899998887
No 205
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.00 E-value=3.5e-09 Score=98.81 Aligned_cols=149 Identities=11% Similarity=0.047 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
+.+..+....++.....+......+++.+....+... .+++.+...++..++.+++++++||+|+|+.+.++.+
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~ 304 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADL------FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASI 304 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3444444444444444444444444444433223333 5666666668888999999999999999999988877
Q ss_pred HHHHHHHHhhh-----hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhcc-------ccchhhhHhHHHHHHHhHHHHHH
Q 018727 121 SVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGP 187 (351)
Q Consensus 121 ~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~ 187 (351)
+..++.+.... .++.+.+++.-++.|++.+...+. .++++|..+ .+..|..++......-+|..+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~ 384 (473)
T PRK10429 305 FPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAA 384 (473)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHH
Confidence 66655544322 345566666677788887776664 888999865 34455688888999999999999
Q ss_pred HhhhhhcC
Q 018727 188 ALGGFLAQ 195 (351)
Q Consensus 188 ~~~~~l~~ 195 (351)
.+.|.+.+
T Consensus 385 ~i~g~~l~ 392 (473)
T PRK10429 385 FFIGVVLG 392 (473)
T ss_pred HHHHHHHH
Confidence 99999886
No 206
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.99 E-value=9.4e-09 Score=94.52 Aligned_cols=174 Identities=14% Similarity=0.189 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcC---------h
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR---------K 112 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr---------r 112 (351)
++.+++..+........+...+|.+.+ -+|++-.+ .|++.++..+...+..+++|.++||.-+ |
T Consensus 260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~------~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk 333 (466)
T KOG2532|consen 260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRE------TGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK 333 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH
Confidence 446778888888888888888986655 47999888 9999999999999999999999998855 2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHhhhhc-ccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHh
Q 018727 113 PVIIMGTASVVIFNTLFGLSVNFWM-AVLTRFLLGSLN-GLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL 189 (351)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~-g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 189 (351)
..-.++....+++.+..++.++... ..+..+..+.+. |.... ...-..|. .+++-+..+|+.+....+.++++|.+
T Consensus 334 ifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~ 412 (466)
T KOG2532|consen 334 IFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLL 412 (466)
T ss_pred HHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333445555555555565542111 111111222221 22211 22223333 45678999999999999999999999
Q ss_pred hhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcc
Q 018727 190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL 236 (351)
Q Consensus 190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (351)
.+.+.+ .+ . +-.|+.+|.+.+++.++..+.+.+.
T Consensus 413 vg~~~~-~~-t-----------~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 413 VGIIVT-DN-T-----------REEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred eeeEeC-CC-C-----------HHHHHHHHHHHHHHHHHhchheeEe
Confidence 999985 11 0 4457777788777776665544444
No 207
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.98 E-value=9.7e-10 Score=97.20 Aligned_cols=196 Identities=14% Similarity=0.019 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchh--hhhHHHHH-HHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIG--SYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIM 117 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 117 (351)
+.++..+..+|+.-+..+..+.....+.+..++.+.+.+.. ...+.... +...++..+..+...++|++|||+..+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 34445667778777888888888888998888877663320 01111122 2233445577788899999999999999
Q ss_pred HHHHHHHHHHHhhhhhh----HHHHHHHHHHhhh-h-cccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727 118 GTASVVIFNTLFGLSVN----FWMAVLTRFLLGS-L-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG 191 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~-~-~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 191 (351)
+.+++.+..+..+...+ -..+++...+..+ + .|...+...+.+|.||.+.|++.-|+..+++-.|++++.....
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 99999998888877655 1223333333333 2 3344445778899999999999999999999999999999988
Q ss_pred hhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCC
Q 018727 192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDD 247 (351)
Q Consensus 192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 247 (351)
++.+.. |+. ..+.+..+++.+.+.++..+..+++||++++..++.
T Consensus 464 ~~t~~~--yp~---------~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei 508 (538)
T KOG0252|consen 464 YLTDHN--YPP---------NIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEI 508 (538)
T ss_pred Hhhhcc--CCc---------cccchHHHHHHHHHHHHhHheeEEeecccccCHHHh
Confidence 887632 322 334555668888888888888899999987665443
No 208
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.97 E-value=2.7e-08 Score=90.66 Aligned_cols=122 Identities=13% Similarity=0.095 Sum_probs=97.2
Q ss_pred HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018727 66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLL 145 (351)
Q Consensus 66 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 145 (351)
...+.+|.++.+ .|++.+...++..+++++.+++.||.++|+++..+.. .++...+.+..++++...+..++.
T Consensus 231 ~~~~~lg~s~~~------~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 303 (393)
T PRK11195 231 WAPVALGITLNQ------PAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILI 303 (393)
T ss_pred HHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344567888888 9999999999999999999999999999988887753 344444455566777677777788
Q ss_pred hhhcccchh-HHHHHhhhccccc-hhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727 146 GSLNGLLGP-IKAYACEIFREEH-QALGLSTVSTAWGIGLIIGPALGGFLA 194 (351)
Q Consensus 146 G~~~g~~~~-~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (351)
|++.+...+ ..+.+.+..|++. +|++.++.+....+|..++..+.+.+.
T Consensus 304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 988777665 4777778766654 799999999999999999999988664
No 209
>PRK09669 putative symporter YagG; Provisional
Probab=98.93 E-value=8.1e-09 Score=95.69 Aligned_cols=112 Identities=20% Similarity=0.280 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHH-hhh-hhhHHHHHHHHHHhhhhcccchhH-HHHHh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL-FGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYAC 160 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~ 160 (351)
.+.+.....+...++.+++++++||+|+|+.+..+.++..+.... ... .++.+.+++..++.|++.+...+. .++++
T Consensus 266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~a 345 (444)
T PRK09669 266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFS 345 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777888999999999999999998887665543332 222 356667777778889988777775 88999
Q ss_pred hhccc-------cchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 161 EIFRE-------EHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 161 ~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
|..+. +..|...+..+.+..+|..+|+.++|.+.+
T Consensus 346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88862 334567788888999999999999999887
No 210
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.91 E-value=3.7e-08 Score=89.18 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=81.8
Q ss_pred hhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh---hhh-hhH
Q 018727 61 FPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNF 135 (351)
Q Consensus 61 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~ 135 (351)
....| .+.+++|.++.+ .+++.+...++..++.++.|++.||+|||+.+.++..+..+..+.. ... .+.
T Consensus 214 ~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (377)
T PRK11102 214 LTAGPFVYIELNGVSPQN------FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGF 287 (377)
T ss_pred HHcCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33334 345567888888 9999999999999999999999999999999888876544433222 111 234
Q ss_pred HHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHH-HHHhHHHHHHHhhh
Q 018727 136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGG 191 (351)
Q Consensus 136 ~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~ 191 (351)
+.+.+...+.+.+.+.... ...++.|..| ++|+++.++.+. ...+|..+++.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 288 WALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443333333333333333 3556677766 789999988754 34577777776654
No 211
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.91 E-value=9.4e-09 Score=95.60 Aligned_cols=121 Identities=7% Similarity=-0.037 Sum_probs=101.1
Q ss_pred HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh----------hhHHHH
Q 018727 69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----------VNFWMA 138 (351)
Q Consensus 69 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l 138 (351)
+.+|.++.+ .|++.....++..++....+.+.+|++.|+++.++.++.+++.+..... ++.+.+
T Consensus 281 ~~lG~s~~~------~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~ 354 (468)
T TIGR00788 281 QCLPGGPSF------SGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV 354 (468)
T ss_pred ccCCCCcch------hhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence 467999998 9999999999999999999999999999999999999888877554311 233344
Q ss_pred HHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 139 VLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 139 ~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
...-++.+++.+.... ...++.+..|++.+|+..++.+...++|..+++.+++.+.+
T Consensus 355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777666444 58999999999999999999999999999999999999988
No 212
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.86 E-value=2.2e-08 Score=92.03 Aligned_cols=127 Identities=21% Similarity=0.244 Sum_probs=90.8
Q ss_pred hhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-----cChHHHHHHHHHHHHHHHHhhhh----
Q 018727 62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPVIIMGTASVVIFNTLFGLS---- 132 (351)
Q Consensus 62 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~~~~~~~~~~~~~~~~~~~---- 132 (351)
+..|.+.+++|+++.+ ...+.+...+. -...++.|.++|-+ .||+-++++.++..++.+.++..
T Consensus 11 ~~~~~l~~~l~ls~~~------~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~ 83 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQ------LQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE 83 (433)
T ss_pred HHHHHHHHHcCCCHHH------HHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc
Confidence 4457788899999988 76666665544 34678899999986 35556667777765555544442
Q ss_pred hhHHHHHHHHHHhhhhcccchhH-HHHHhhhcc--ccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 133 VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 133 ~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
.+.....+.-++..+|.....++ -+++.|... ++.||...+.......+|++++..++|.+.+
T Consensus 84 ~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~ 149 (433)
T PF03092_consen 84 SSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD 149 (433)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34555555556666777666664 778888763 2337888888888999999999999999988
No 213
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.7e-07 Score=80.97 Aligned_cols=153 Identities=16% Similarity=0.118 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-cChHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGT 119 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~ 119 (351)
+..+.+.+..-++.+.+++...++|.+..|.|+|..+ .|++.+...+.....++....+.+|. .+|+..+...
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~------aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~ 281 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAE------AGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL 281 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHH------hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 4455666666677888899999999999999999999 99999999999999999999999975 4667777777
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhcc-ccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 197 (351)
.++.++...+.+.+.-..++. -++.|+|.|...+ +...+.+..+ +++-+...+..+..+.+=..+||.+.|++-|.+
T Consensus 282 ~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~ 360 (395)
T COG2807 282 LLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT 360 (395)
T ss_pred HHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence 777777776666654333332 4889999777666 4777776665 445556666777777777788999999999855
Q ss_pred CCC
Q 018727 198 EKY 200 (351)
Q Consensus 198 ~~~ 200 (351)
++|
T Consensus 361 gsw 363 (395)
T COG2807 361 GSW 363 (395)
T ss_pred CCh
Confidence 433
No 214
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.83 E-value=2.6e-11 Score=112.48 Aligned_cols=163 Identities=18% Similarity=0.221 Sum_probs=102.4
Q ss_pred cchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhh--h---h
Q 018727 58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--L---S 132 (351)
Q Consensus 58 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~---~ 132 (351)
+....+.+.+.++.+.+... .... ...+...++.++..++.||+|||++++.+..+.+++.+..+ . .
T Consensus 270 ~~~~~~~~~i~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (451)
T PF00083_consen 270 NFIFYYSPSIFENAGISNSF-----LATL---ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGV 341 (451)
T ss_pred cccccccccccccccccccc-----cccc---cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34444556666666666551 0222 23344456777778999999999999999888887776654 1 1
Q ss_pred hh----HHHHHHHHHHh--hhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccc
Q 018727 133 VN----FWMAVLTRFLL--GSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 206 (351)
Q Consensus 133 ~~----~~~l~~~r~l~--G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw 206 (351)
++ -...++.-.+. +++.+.......+.+|.+|++.|+++.++......++++++|.+...+.+.
T Consensus 342 ~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~---------- 411 (451)
T PF00083_consen 342 SSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN---------- 411 (451)
T ss_pred ccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc----------
Confidence 11 11111111122 222233333468889999999999999999999999999999888777662
Q ss_pred cccccCcc-chhHHHHHHHHHHHHHHHHhccccccccCC
Q 018727 207 ESLFGKFP-YFLPCLCISLFAFGVTIAAFWLPETLHRHN 244 (351)
Q Consensus 207 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 244 (351)
.+ +.......++..+..++.++++||++.+..
T Consensus 412 ------~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l 444 (451)
T PF00083_consen 412 ------LGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTL 444 (451)
T ss_pred ------ccccccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence 11 222223333444445567788999986544
No 215
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.82 E-value=5.6e-07 Score=86.27 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=112.0
Q ss_pred hhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hcChHHHHHHHHHHHHHHHHhhhhhh------
Q 018727 62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVN------ 134 (351)
Q Consensus 62 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~------ 134 (351)
.+..++.+.+|.+... ...+...+....-+..+++|+++|+ +||++++.++.++..++..+.++...
T Consensus 9 iLvlYl~~~lg~~~~~------A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~ 82 (654)
T TIGR00926 9 ILVLYFLNFLGFSEST------STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHP 82 (654)
T ss_pred HHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 3345566678888877 7777777777778889999999996 69999999999998888877765321
Q ss_pred --HHHHHHHHHHhhhhcccchhH-HHHHhhhcccc---chhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccc
Q 018727 135 --FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES 208 (351)
Q Consensus 135 --~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~ 208 (351)
....+++-.+..+|.|.+-++ .+...|.++++ .|-..+.++..+.++|+.+++.+.+++.+..+.+..
T Consensus 83 ~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~------ 156 (654)
T TIGR00926 83 LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGC------ 156 (654)
T ss_pred hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------
Confidence 123445556666787777775 88999998754 366778888999999999999999888742111111
Q ss_pred cccCccchhHHHHHHHHHHHHHHHHh
Q 018727 209 LFGKFPYFLPCLCISLFAFGVTIAAF 234 (351)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (351)
..+|...+.+.++..++.+++..
T Consensus 157 ---~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 157 ---QDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHHH
Confidence 12455556666666555554443
No 216
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.80 E-value=2.1e-07 Score=80.91 Aligned_cols=139 Identities=31% Similarity=0.493 Sum_probs=110.3
Q ss_pred HHhhccccchhhhHHHHHHhhcccc--cccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHH
Q 018727 51 LCTALPISSLFPFLYFMIKDFQIAK--REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL 128 (351)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 128 (351)
+.............+.+..+++.+. .. .++..+...++..++.++.|.++||+|||+.+..+......+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 85 (338)
T COG0477 12 LLLGLDLGLLSPALPLLLSTLSLSSGRLL------YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLL 85 (338)
T ss_pred HHHHHhcchHHHHHHHHHHHcCCCchhHH------HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHH
Confidence 3333555666677777777776665 35 788999999999999999999999999998888887655555555
Q ss_pred hhhhhh--HHHHHHHHHHhhhhcccchhH-HHHHhhhccc-cchhhhHhHHHH-HHHhHHHHHHHhhhhhcC
Q 018727 129 FGLSVN--FWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVST-AWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 129 ~~~~~~--~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~ 195 (351)
..+..+ .+.+++.|++.|++.+...+. .+++.|++|+ ++|+...+.... ...+|..++|.+++.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 86 LALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred HHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554 888999999999988876665 8999999998 678999998877 688899999988887775
No 217
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.79 E-value=1.6e-07 Score=82.92 Aligned_cols=242 Identities=11% Similarity=-0.021 Sum_probs=146.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH-HHHHHHHHHHhhhhhh--HHH-HHHHHHHhhhhcccchhH-H
Q 018727 82 SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG-TASVVIFNTLFGLSVN--FWM-AVLTRFLLGSLNGLLGPI-K 156 (351)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~-~~~~~~~~~~~~~~~~--~~~-l~~~r~l~G~~~g~~~~~-~ 156 (351)
.+.+...++..+..++.+|+.|.++|+.|+||..+.. ..+..++..+..+.++ ++. .++...+..++.....+. .
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 3477888888888899999999999999987665544 4444444455555443 444 444445566666556665 8
Q ss_pred HHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh--hhhcCCCCCCCC-cccccccccCccchhHHHHHHHHHHHHHH-H
Q 018727 157 AYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFLAQPAEKYPN-LFSSESLFGKFPYFLPCLCISLFAFGVTI-A 232 (351)
Q Consensus 157 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~~~-~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~ 232 (351)
+++.+..++++-++..++-.....+|+.+.-+.. +.+....++.+. .++-...- .-.-|..+.++++..++..+ .
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPAD-GEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccc-cccchhHHHHHHHHHHHHHhHH
Confidence 9999999998888888777777777777655543 222111111100 00000001 22334445555555444433 3
Q ss_pred HhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCC
Q 018727 233 AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSP 312 (351)
Q Consensus 233 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (351)
++..++.++...+ ......+. -++-..+.+++.+++++..+++..+++.-...+...+-..|....
T Consensus 217 ~~~v~~~~~~~~~---~~~~l~~g-----------~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~ 282 (438)
T COG2270 217 ILNVHDAEKISSP---PPTALRNG-----------FKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAAD 282 (438)
T ss_pred Hhccccccccccc---chHHHHHH-----------HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344443321101 10111000 111223456677788899999999998888888888888888755
Q ss_pred CCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 313 KKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 313 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
+|++..+...+.....+..+++.+..
T Consensus 283 -----~gls~~~lll~g~~~~vvA~lg~ii~ 308 (438)
T COG2270 283 -----LGLSSTELLLIGIALSVVAALGAIIA 308 (438)
T ss_pred -----cCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999998888777777777665554
No 218
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.79 E-value=3.2e-07 Score=83.67 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=87.4
Q ss_pred HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH-HHHHHHHHhhh--hhhHHHHHHHHH
Q 018727 67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA-SVVIFNTLFGL--SVNFWMAVLTRF 143 (351)
Q Consensus 67 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~-~~~~~~~~~~~--~~~~~~l~~~r~ 143 (351)
+.+.+|.+..+ .+++.....++..++.++.+++.||++++........ ...+....... ..+.+.+....+
T Consensus 234 ~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (394)
T PRK11652 234 MGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAA 307 (394)
T ss_pred HHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 33447888877 8888888888888999999999999984333322222 22222122221 234566677778
Q ss_pred HhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 144 l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+.|++.+...+. ..+..|.+| ++++++.++.+....+|..+++.+++.+.+
T Consensus 308 ~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 308 LFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 888887776664 777888887 578999999999999999999999988865
No 219
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.79 E-value=1.2e-07 Score=86.76 Aligned_cols=144 Identities=13% Similarity=-0.029 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHhhc--ccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQ--IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
+....+..++..........+++.+.++.+ .+... .+...+.+..+..++.++++++.||+++|+++.++.+
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~------a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~ 307 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGF------AANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAI 307 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 333344444444444444566666665543 22223 3445566667788999999999999999999988888
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+..+..++....++... ...-++.|++.+...| ......+..+++.+....++.. ..+|+.+.|.+.|.+.|
T Consensus 308 ~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~--~~~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 308 IGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM--AIIGGGIVPPLQGFIID 380 (410)
T ss_pred HHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--HHhccchHHHHHHHHHH
Confidence 88888877777666444 4455566666555445 5888888888665433333333 33999999999999998
No 220
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.78 E-value=2.2e-08 Score=90.14 Aligned_cols=128 Identities=18% Similarity=0.134 Sum_probs=85.9
Q ss_pred HHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHH
Q 018727 48 IIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 126 (351)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 126 (351)
+..++............|.+. +.+|.++.+ .+++.+...+...++.+++|+++||+|||+.+..+..+...+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~ 305 (366)
T TIGR00886 232 LLYSVTFGSFLGVSSIFAMFFKDQFGLSKVT------AGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGA 305 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHH
Confidence 333333333344455555554 457888888 8888888888999999999999999999988777766555554
Q ss_pred HHhhh--hh--hHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhH
Q 018727 127 TLFGL--SV--NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIG 182 (351)
Q Consensus 127 ~~~~~--~~--~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g 182 (351)
.+... .. +.+.+++.-.+.+++.|.... ...++.|..| +++|+++|+.+...++|
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 306 FLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 44433 22 454444444444444444333 4667778777 68999999988877765
No 221
>PRK11462 putative transporter; Provisional
Probab=98.74 E-value=3.7e-07 Score=84.84 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHhhhhcccchhH-HHHHh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYAC 160 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~-~~~~~ 160 (351)
.+.+...+.++..++.+++++++||+|+|+++..+..+..+..++..+. ++...+++.-++.|++.+...+. .++++
T Consensus 265 ~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~a 344 (460)
T PRK11462 265 FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMS 344 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888999999999999999998775544443333322222 22333444455667766555554 67777
Q ss_pred hhcc-------ccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 161 EIFR-------EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 161 ~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
|..+ .+..|..++....+..+|..+++.++|.+.+
T Consensus 345 d~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 345 DTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766 3334555567778888999999999988876
No 222
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.74 E-value=2.2e-06 Score=76.55 Aligned_cols=161 Identities=20% Similarity=0.224 Sum_probs=120.1
Q ss_pred hhH-HHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 018727 62 PFL-YFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV 139 (351)
Q Consensus 62 ~~~-~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 139 (351)
|++ |++.+. .|++..+- ..-+.-...-.+....++...+.|..|.|++++++.+...+...+.-+.++...+-
T Consensus 24 Pfl~~yL~~~~kn~T~~qv-----~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq 98 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQV-----NNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQ 98 (412)
T ss_pred ccchHHHcCCccCCCHHHH-----HHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHH
Confidence 444 444443 67777661 12334445556677888999999999999999999999888888888899999999
Q ss_pred HHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHH
Q 018727 140 LTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPC 219 (351)
Q Consensus 140 ~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~ 219 (351)
+..++.|++.+.-.+..+++-...|+++-.++.+....+..+|..++.+++=.+.. ++..++....
T Consensus 99 ~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs--------------~~~~sy~~L~ 164 (412)
T PF01770_consen 99 LMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS--------------FGGVSYFQLN 164 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hcCCCHHHHH
Confidence 99999999877655557888778888888888888888888888888887766654 1144556666
Q ss_pred HHHHHHHHHHHHHHhccccccc
Q 018727 220 LCISLFAFGVTIAAFWLPETLH 241 (351)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~e~~~ 241 (351)
.+......++++..+++|..++
T Consensus 165 ~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 165 YISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHHcCCCCc
Confidence 6666666666677777887654
No 223
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.73 E-value=1e-07 Score=84.66 Aligned_cols=145 Identities=21% Similarity=0.326 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----hcChHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPVII 116 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~~ 116 (351)
+.++.+....+...+.+..-..+.+++.++.|++... .+.+-...-+...+.+++.|..+|| |||||.++
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI 105 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKW------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFI 105 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCccc------ccccccccccccceecccccccccccccccccccchH
Confidence 4555666666666666666677778888889998877 5555555556668899999999995 89887655
Q ss_pred H-HHHHHHHHHHHhhhhhhHHHH------------HHHHHHhhh-----hc-ccchhHHHHHhhhccccchhh-hHhHHH
Q 018727 117 M-GTASVVIFNTLFGLSVNFWMA------------VLTRFLLGS-----LN-GLLGPIKAYACEIFREEHQAL-GLSTVS 176 (351)
Q Consensus 117 ~-~~~~~~~~~~~~~~~~~~~~l------------~~~r~l~G~-----~~-g~~~~~~~~~~~~~~~~~r~~-~~~~~~ 176 (351)
. +.+...++.++..++.++..+ .+.-++.|+ +. -...|+-++++|.+..+++-+ +.+.+.
T Consensus 106 ~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~ 185 (498)
T KOG0637|consen 106 LAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS 185 (498)
T ss_pred HHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence 4 456666666676665543221 222333443 22 335567889999998877777 999999
Q ss_pred HHHHhHHHHHHHhhh
Q 018727 177 TAWGIGLIIGPALGG 191 (351)
Q Consensus 177 ~~~~~g~~~~~~~~~ 191 (351)
....+|+.+|..+++
T Consensus 186 ~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 186 FFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHhcceeeeeccc
Confidence 999999999888776
No 224
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=6.2e-08 Score=84.50 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=116.3
Q ss_pred HHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc--ChHHHHHHHHHHHHHH
Q 018727 50 VLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIFN 126 (351)
Q Consensus 50 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~ 126 (351)
....+......-|.++. ..+.+..+..+ .|+..--..+.++++..+.|.++||++ |......+++..++++
T Consensus 279 i~~~n~~lafLePtlslwm~e~m~~p~w~------~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~ 352 (464)
T KOG3764|consen 279 ITFSNSSLAFLEPTLSLWMLETMFTPGWE------VGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSS 352 (464)
T ss_pred hhhccchHHHhCcccHHHHHHhccCCCcc------eeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence 33444555666677776 44556644446 787777788999999999999999999 6555556667777777
Q ss_pred HHhhhhhhHHHHHHHHHHhhhhcccchh----HHHHHhhhcccc---chhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727 127 TLFGLSVNFWMAVLTRFLLGSLNGLLGP----IKAYACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (351)
Q Consensus 127 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~----~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 199 (351)
....+++++..+++-++..+++.+.... ...++.|.-..+ .-|...++...++++|..+||.++|.+.+
T Consensus 353 ~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~---- 428 (464)
T KOG3764|consen 353 GPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE---- 428 (464)
T ss_pred chhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhee----
Confidence 7778899999999998888887666443 233444444444 56788999999999999999999999998
Q ss_pred CCCcccccccccCccchhHHHHHHHHHHHH
Q 018727 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGV 229 (351)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~ 229 (351)
++++.+...+.++..++-
T Consensus 429 ------------~iGF~wl~~iig~~n~iy 446 (464)
T KOG3764|consen 429 ------------AIGFEWLMTIIGILNLIY 446 (464)
T ss_pred ------------ehhHHHHHHHHHHHHHHH
Confidence 666666666665555553
No 225
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.71 E-value=5.5e-07 Score=85.04 Aligned_cols=183 Identities=14% Similarity=0.154 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
+.+..+.+..+.+..+.+....+.+.+.+..+.+.+. .+...+..+...++..++..+.||+|||+.++.+..
T Consensus 295 ~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-------~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~ 367 (513)
T KOG0254|consen 295 RLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-------FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAA 367 (513)
T ss_pred HHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHH
Confidence 3344555566666667777778888888887776542 223344455567777788999999999999999999
Q ss_pred HHHHHHHHhhhhhhH-----------H--HHHHHH-HHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHH
Q 018727 121 SVVIFNTLFGLSVNF-----------W--MAVLTR-FLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 186 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~-----------~--~l~~~r-~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 186 (351)
.+.++.++.+..... . .+.... ++..+..+.......+.+|.+|.+.|+++.++......+...+-
T Consensus 368 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v 447 (513)
T KOG0254|consen 368 GMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI 447 (513)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH
Confidence 999988877653211 1 111111 22223333333347789999999999999998766666555544
Q ss_pred HHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCC
Q 018727 187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHND 245 (351)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~ 245 (351)
......+.+. .++...| +.+.++..+... .+.+++||++.+..+
T Consensus 448 ~~~~~~~~~~-------~~~~~~f--------~~f~~~~~~~~~~fv~~~~pETkg~sle 492 (513)
T KOG0254|consen 448 SFFFPFITEA-------LGIGGTF--------GYFGGICLLSLIIFVFFFVPETKGLTLE 492 (513)
T ss_pred HHHHHHHHHh-------ccccchH--------HHHHHHHHHHHHHHheEEcccCCCCcHH
Confidence 4443333331 1111111 233333333444 577889998765543
No 226
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.68 E-value=4.7e-08 Score=88.32 Aligned_cols=141 Identities=22% Similarity=0.333 Sum_probs=116.3
Q ss_pred HHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHH
Q 018727 49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL 128 (351)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 128 (351)
..++.+.....+..++--..++.+..+.- .|........+-.+.-++.+++..|+|+-+++..++.+..+=.+.
T Consensus 379 ~av~mG~g~~lv~tFLfWHled~~~~~~L------fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~ 452 (618)
T KOG3762|consen 379 VAVVMGAGVGLVFTFLFWHLEDLGGIKTL------FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLY 452 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccee------eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHH
Confidence 33344444555555555567777755555 676666667777888889999999999999999999999998999
Q ss_pred hhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHH-HHHHHhHHHHHHHhhhhhcC
Q 018727 129 FGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 129 ~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~ 195 (351)
.+...|.|+.+-.-+++|+..+.... +.+|++...|++.|.++.++. ....++|-.+|.+++|.+.+
T Consensus 453 ~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~ 521 (618)
T KOG3762|consen 453 YSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE 521 (618)
T ss_pred HHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence 99999999999999999998777666 599999999999999999987 55677999999999999998
No 227
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.66 E-value=6.8e-07 Score=83.45 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhh----hhhh-hcChHHH--HHHHHHHHHHHHHhhh---------hhhHHHHHHHHHHhhh
Q 018727 84 AGYVGSSFMFGRALTSVFWGL----VADR-YGRKPVI--IMGTASVVIFNTLFGL---------SVNFWMAVLTRFLLGS 147 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~----l~dr-~Grr~~~--~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~ 147 (351)
.+++.+...+.-.+.+++..+ +.|| .+.+... .+|.++.+++....++ ..+++++++..++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 567777777777777776554 4444 2333433 6778888777766653 4688999999999999
Q ss_pred hcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 148 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 148 ~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
|.....|. ..++++..|++.||+++|++.....+|..+++.+......
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~ 442 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV 442 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99888886 9999999999999999999999999999999998877654
No 228
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.62 E-value=4.9e-07 Score=79.33 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
.+.+..-.+..++..........+++.+.++ .|.++.+ .+...+.+..+..+|.+.+-++..|+...|.+.+.
T Consensus 235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~------aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~ 308 (422)
T COG0738 235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQ------AAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFY 308 (422)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3455556667777777777888888887777 7778888 89999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
.++..+.++..+++++...++ .-++.|+..+...| +.+...+..| ++ ....+..-.+..+|+++.|.+.|++.|
T Consensus 309 a~~~ill~~~~~l~~g~v~~~-~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d 383 (422)
T COG0738 309 ALIAILLLLAVALIGGVVALY-ALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIAD 383 (422)
T ss_pred HHHHHHHHHHHHHhcChHHHH-HHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHH
Confidence 888888888888888855544 34566777667666 5888888888 33 444555556777899999999999998
No 229
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.60 E-value=9.6e-07 Score=80.16 Aligned_cols=149 Identities=12% Similarity=0.207 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
+.+..+++..++.....+..+....++.+. +|.++.. ..+.......+..++.+++..+++|+|+|+++.++.
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~------~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~ 309 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELF------AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGL 309 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH
Confidence 334444555555555555566655555432 2333333 556666677777778999999999999999999999
Q ss_pred HHHHHHHHHhhhhh--hHHHHHHHHHHhhhhcccchhH-HHHHhhhcc-------ccchhhhHhHHHHHHHhHHHHHHHh
Q 018727 120 ASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPAL 189 (351)
Q Consensus 120 ~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~ 189 (351)
++..++.++..+.+ +.+.+++..++.+++.+...+. .++++|..+ .|.-|...+......=+|..++..+
T Consensus 310 ~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 310 LLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999887776654 6778888888988988877775 777777664 3444677778888888999999988
Q ss_pred hhhhcC
Q 018727 190 GGFLAQ 195 (351)
Q Consensus 190 ~~~l~~ 195 (351)
.|++..
T Consensus 390 ~g~~L~ 395 (467)
T COG2211 390 PGWILG 395 (467)
T ss_pred HHHHHH
Confidence 888876
No 230
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.59 E-value=1.7e-06 Score=76.58 Aligned_cols=167 Identities=17% Similarity=0.124 Sum_probs=124.5
Q ss_pred ccccchhhhH-HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh-hhcChHHHHHHHHHHHHHHHHhh--
Q 018727 55 LPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIFNTLFG-- 130 (351)
Q Consensus 55 ~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~-- 130 (351)
+.++...+.+ |+=-+-||++..+ ...+......+..++-...|++.. |.++++...+++....++..+..
T Consensus 222 ~a~~~QD~iLEPygg~Vfgmsv~e------TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a 295 (403)
T PF03209_consen 222 LAFFMQDVILEPYGGEVFGMSVGE------TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA 295 (403)
T ss_pred HHHHhhHHHcCCchhHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566 4556679999999 888999999999999999998877 67888888888887777765543
Q ss_pred -hhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccc
Q 018727 131 -LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES 208 (351)
Q Consensus 131 -~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~ 208 (351)
...+.+.+...-++.|++.|.+.+. ...+-|...+++.|..+|.+..+..++..++..++|.+.|........
T Consensus 296 ~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~----- 370 (403)
T PF03209_consen 296 GPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN----- 370 (403)
T ss_pred HhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----
Confidence 3457788888999999999999885 778889999999999999999999999999999999887622111000
Q ss_pred cccCccchhHHHHHHHHHHHHHHHH
Q 018727 209 LFGKFPYFLPCLCISLFAFGVTIAA 233 (351)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (351)
.. ..+|-.+|.+-++..++.+++.
T Consensus 371 ~~-~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 371 SP-ALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred Cc-chHHHHHHHHHHHHHHHHHHHH
Confidence 00 3445666666655555544443
No 231
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.51 E-value=3.8e-06 Score=65.12 Aligned_cols=107 Identities=21% Similarity=0.191 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhcccc
Q 018727 88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE 166 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~ 166 (351)
.++......+++++.+.+.+++|.|+.++++.+...+..... +-++.+.++.+-++.|++.+...+. ..++.+..+++
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~ 121 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE 121 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence 445556678888999999999999999999998888665544 4556788889999999999998886 78999999999
Q ss_pred chhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 167 HQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 167 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
.|++..++.......+.++|.++.-.+.+
T Consensus 122 ~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 122 TIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988888888888877655543
No 232
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.50 E-value=3.6e-06 Score=79.08 Aligned_cols=108 Identities=8% Similarity=-0.041 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHhhhhh----hhhhhhhcChHHHHHHHHHHHHHHHHhhhhhh---------HHHHHHHHHHhhhhcc
Q 018727 84 AGYVGSSFMFGRALTSVFW----GLVADRYGRKPVIIMGTASVVIFNTLFGLSVN---------FWMAVLTRFLLGSLNG 150 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~----g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~r~l~G~~~g 150 (351)
.+++.++..+...+..++. +++.||++..+.+.++.++.+++.+..+...+ .++++...++.|+|.+
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 4555666665555555555 66666677778888999999999888766554 4578889999999999
Q ss_pred cchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727 151 LLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG 191 (351)
Q Consensus 151 ~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 191 (351)
...|. ..++.+..|++.||+++|.+.....+|..++..+..
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98886 999999999999999999888877777777776664
No 233
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.49 E-value=4.9e-07 Score=61.62 Aligned_cols=79 Identities=16% Similarity=0.284 Sum_probs=72.3
Q ss_pred hccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhh
Q 018727 54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV 133 (351)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 133 (351)
+++...+.|.+|.+.+|.++|.++ .+++.+...+|+.+|.+...++.++..+++.+..+.+...+..+.+++.+
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~------ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQ------AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778899999999999999999 99999999999999999999999998889999999999999999999988
Q ss_pred hHHHH
Q 018727 134 NFWMA 138 (351)
Q Consensus 134 ~~~~l 138 (351)
+.+..
T Consensus 79 ~~~~w 83 (85)
T PF06779_consen 79 SFWLW 83 (85)
T ss_pred chHHH
Confidence 77654
No 234
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.45 E-value=1.2e-05 Score=73.98 Aligned_cols=145 Identities=9% Similarity=0.153 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccc-----cccchhhhhHHHHHHHHHHHHHh-hhhhhhhhhhhcChHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK-----REEDIGSYAGYVGSSFMFGRALT-SVFWGLVADRYGRKPV 114 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~Grr~~ 114 (351)
++++...+..++..+.++.. -.+.+.+..+. +. +.++-+...+...+. .++.+++++|++|+++
T Consensus 7 ~k~~~~~l~fF~il~~Y~iL----R~lKD~lvv~~~~~gae~------i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~l 76 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTIL----RDTKDTLVVTAKGSGAEI------IPFLKTWVVVPMAVIFMLIYTKLSNILSKEAL 76 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhhhhheeecccCCchhh------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh
Confidence 45555666666665555443 34455555532 33 667777666655555 8899999999999998
Q ss_pred HHHHHHHHHHHHHHhhhh-----hh--------------------------HHHHHHHHHHhhh-hcccchhH-HHHHhh
Q 018727 115 IIMGTASVVIFNTLFGLS-----VN--------------------------FWMAVLTRFLLGS-LNGLLGPI-KAYACE 161 (351)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~-----~~--------------------------~~~l~~~r~l~G~-~~g~~~~~-~~~~~~ 161 (351)
+-+..........++++. +. .|...+..+...+ +.-..+.. +.++.|
T Consensus 77 f~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand 156 (472)
T TIGR00769 77 FYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ 156 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 877666555555554432 11 1111122222222 22223324 889999
Q ss_pred hccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 162 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
.+..++-.+-+++...+.++|.++++.+..++.+
T Consensus 157 i~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 157 ITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888763
No 235
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.43 E-value=7.3e-06 Score=75.24 Aligned_cols=148 Identities=9% Similarity=-0.006 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
+.++...+...+............|.+.++ +|.+..+ .++.......+..++..+.+.+.+|.++++.+....
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 291 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQ------FAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAV 291 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence 344433333333333334444455655554 5888888 888877777788888888877665444444432222
Q ss_pred HHHHHHHHHhh-----hhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727 120 ASVVIFNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (351)
Q Consensus 120 ~~~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 193 (351)
.+..++..+.. ..++++..++..++.++|.+...+. .. .+..-....+|++.++.+.....+..+++..++++
T Consensus 292 ~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~-~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~ 370 (413)
T PRK15403 292 PIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFR-FTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWL 370 (413)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHH-HHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222221 1233334456667777777666553 32 22222233479999999888888889999998888
Q ss_pred cC
Q 018727 194 AQ 195 (351)
Q Consensus 194 ~~ 195 (351)
.+
T Consensus 371 ~~ 372 (413)
T PRK15403 371 WF 372 (413)
T ss_pred HH
Confidence 65
No 236
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.42 E-value=1e-06 Score=59.54 Aligned_cols=69 Identities=23% Similarity=0.523 Sum_probs=59.3
Q ss_pred HHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727 47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 121 (351)
-..+++.....+...|++|.+.++.|++..+ +|.+.++..+...++++++|.++||+++++.++....+
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~------iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQ------IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3445556667778889999999999999999 99999999999999999999999999999887766544
No 237
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=98.39 E-value=6e-06 Score=71.84 Aligned_cols=269 Identities=14% Similarity=0.093 Sum_probs=145.6
Q ss_pred CchHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHH--Hhhhhhhhhhh-----hhc
Q 018727 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRA--LTSVFWGLVAD-----RYG 110 (351)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~l~d-----r~G 110 (351)
..++.++.+.+.+++++...+... .+|.+.+.-|.|..+ .+ .+.+++- .--+++.++.| |+|
T Consensus 28 ~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~------~a----~fS~ay~P~sLKllWaPiVDs~y~k~~G 96 (510)
T KOG3574|consen 28 GDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTS------QA----IFSFAYWPFSLKLLWAPIVDSVYSKRFG 96 (510)
T ss_pred hhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhh------hh----hhhhhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 334667788888999999998888 889999877888776 43 3333333 34568999999 999
Q ss_pred ChHHHHH-HHHHHHHHHHHhhh-----------hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHH
Q 018727 111 RKPVIIM-GTASVVIFNTLFGL-----------SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVST 177 (351)
Q Consensus 111 rr~~~~~-~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~ 177 (351)
|||.-++ +..+.+......+. .++...+....++.-+..+.... +-.+.-.+..+++-|.+......
T Consensus 97 rrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~V 176 (510)
T KOG3574|consen 97 RRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSV 176 (510)
T ss_pred cccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHH
Confidence 9986432 23333333333332 12333344455555565555544 35666667777777776666666
Q ss_pred HHHhHHHHHHHhhhhhcCC------CCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccc
Q 018727 178 AWGIGLIIGPALGGFLAQP------AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSC 250 (351)
Q Consensus 178 ~~~~g~~~~~~~~~~l~~~------~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~ 250 (351)
+...|.+++..+.-.+... .-++|..-|.-.. .++ ..+.+.+.++. .+..++-+|.+.. .. ++.
T Consensus 177 g~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL---~gy---~~fwg~~~~vat~Lv~~~kke~~~~-~~--~e~ 247 (510)
T KOG3574|consen 177 GQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITL---AGY---LWFWGALFIVATTLVALLKKENDES-VD--EEL 247 (510)
T ss_pred HHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEh---hHH---HHHHHHHHHHHHHHHHHhcCCCchh-hh--hhh
Confidence 6666666655443222210 0011111111000 000 11122222222 2233332222211 00 000
Q ss_pred hhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHH
Q 018727 251 DVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLA 330 (351)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~ 330 (351)
+.. .....+..+++++-|.+..++......-....+.....++-+.+ .|.+....++...
T Consensus 248 ~~~--------------i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle------~Gv~ke~Lal~~v 307 (510)
T KOG3574|consen 248 ELG--------------IHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE------HGVPKEELALIAV 307 (510)
T ss_pred hcC--------------HHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH------cCCChhHheeeee
Confidence 000 11112245667777888888888888888888888888877766 6888777766553
Q ss_pred HHhhhHH-hhhcccccc
Q 018727 331 ITGTKVD-THILPFKID 346 (351)
Q Consensus 331 ~~~~~~~-~~~~~~~~~ 346 (351)
...-..+ +....+|+.
T Consensus 308 ~~~plqI~l~~~~gk~t 324 (510)
T KOG3574|consen 308 PLVPLQIALPLYIGKWT 324 (510)
T ss_pred ehhhHHHhhhhhheeec
Confidence 3333333 344455554
No 238
>PTZ00207 hypothetical protein; Provisional
Probab=98.39 E-value=4.3e-06 Score=79.03 Aligned_cols=183 Identities=11% Similarity=0.067 Sum_probs=126.2
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHHHhh-cc-cccccchhhhhHH-HHHHHHHHHHHhhhhhhhhhhhhcCh----
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDF-QI-AKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVADRYGRK---- 112 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~Grr---- 112 (351)
..++|.++...++.......+..-+.++.+.+ |. .+.+ ... ++++..++.++|.+..|.++...-+|
T Consensus 352 ~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~------~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~ 425 (591)
T PTZ00207 352 TARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDA------LNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAED 425 (591)
T ss_pred chhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCcc------ceeeehhhhhHHHHhhHHHHHHHHHHHHhhcccc
Confidence 45677778877777766666666677888888 65 2222 122 67888888899999888887222221
Q ss_pred ----H-HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHH
Q 018727 113 ----P-VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIG 186 (351)
Q Consensus 113 ----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 186 (351)
+ .+.+..+ +.++.+++++.-....+++..++.|++.|...++ ...++|+|. |+-|+...+...+..+|+.+-
T Consensus 426 r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~ 503 (591)
T PTZ00207 426 RVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFL 503 (591)
T ss_pred ccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHH
Confidence 2 2333333 5555555555533368899999999999998775 899999999 888999998888888888876
Q ss_pred -HHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHH
Q 018727 187 -PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAA 233 (351)
Q Consensus 187 -~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (351)
-.+.|.+.|.... ..|-..-.|+..++.++++.+.+++...+..
T Consensus 504 n~~l~G~~Yd~ea~---k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s 548 (591)
T PTZ00207 504 NRLLYGEWYTQQAD---KLGQDVCTERVCVVMPLAFLLGLSFLAFITS 548 (591)
T ss_pred HHHHHHHHHHHHHh---hCCCCeeCCceeeHhHHHHHHHHHHHHHHHH
Confidence 5677777763221 0122234456778999998888877766543
No 239
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.35 E-value=8.1e-06 Score=76.43 Aligned_cols=111 Identities=12% Similarity=0.069 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChH-------HHHHHHHHHHHHHHHhh-----h-----hhhHHHHHHHHHHhh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKP-------VIIMGTASVVIFNTLFG-----L-----SVNFWMAVLTRFLLG 146 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-------~~~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~r~l~G 146 (351)
.+++.+...+...+..++.+++.||+|+|+ -+.+|.++.+++.+..+ . ..+.+.++...++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 455666666777788899999999999997 36667777666653221 1 135677778889999
Q ss_pred hhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727 147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (351)
Q Consensus 147 ~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (351)
+|.+...+. ..++.+..|++.++.++|+++...++|+.++..++....
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTA 439 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998886 899999999999999999999999999999988886553
No 240
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.33 E-value=6.4e-07 Score=82.88 Aligned_cols=142 Identities=14% Similarity=0.128 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----hcChHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPVI 115 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~ 115 (351)
..++...+..++.....+....++|.+.++ .|.+..+ .+.+...+.++.+++.+++|+++|| ..+|...
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~------a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~ 346 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQ------ANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLF 346 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHH------hccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345567777888888899999999999888 5688878 8888999999999999999999999 6666666
Q ss_pred HHHHHHHHHHH-HHhhhhhhHHHHHHHHHHhh-hhcccchhH-HHHHhhhccccc-hhhhHhHHHHHHHhHHHHHHHh
Q 018727 116 IMGTASVVIFN-TLFGLSVNFWMAVLTRFLLG-SLNGLLGPI-KAYACEIFREEH-QALGLSTVSTAWGIGLIIGPAL 189 (351)
Q Consensus 116 ~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G-~~~g~~~~~-~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~ 189 (351)
.....+..+.. .......+.... ...++.| .+.....++ ....++...... |-...+....+.+.++.++|.+
T Consensus 347 ~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~ 423 (495)
T KOG2533|consen 347 IVFLCLYAIIGAISLLAAAVLPGA-YGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQL 423 (495)
T ss_pred HHHHHHHHHHHHHHHHhhccchHH-hHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhh
Confidence 55554444433 333333222222 2222333 233333333 566666665443 3344445555555555555444
No 241
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.28 E-value=5.5e-05 Score=70.00 Aligned_cols=183 Identities=14% Similarity=0.000 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhhccccchhhhHHHH-HHh-hcccccccchhhh-----hHHHHHHHHHHHHHhhhhhhhhhhhhcC-hHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFM-IKD-FQIAKREEDIGSY-----AGYVGSSFMFGRALTSVFWGLVADRYGR-KPV 114 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~s~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~ 114 (351)
+..+++..++.-++...+..+...+ .++ |+-++..++ .++ ..+....+.+...+.+++.-++.+|+|+ |++
T Consensus 260 m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~-~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~ 338 (477)
T TIGR01301 260 VWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA-KYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRL 338 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 3445555555555544444333333 322 443332211 111 2233344445555777788889999995 677
Q ss_pred HHHHHHHHHHHHHHhhhhhh---------------------HHHHHHHHHHhhhhcccchhH-HHHHhhhccc--cchhh
Q 018727 115 IIMGTASVVIFNTLFGLSVN---------------------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQAL 170 (351)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~--~~r~~ 170 (351)
..++.++.+++.....+.++ .+..++...+.|+..+....+ ++++++..++ ++.|.
T Consensus 339 ~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~ 418 (477)
T TIGR01301 339 WGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL 418 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcc
Confidence 78888888877766654432 256667777888887777666 8999999885 45599
Q ss_pred hHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhcccccc
Q 018727 171 GLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETL 240 (351)
Q Consensus 171 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~ 240 (351)
.+|+.|.+..+.+++..+..|.+.+.. | .+-...+.+.++..++.. +..+.+|+++
T Consensus 419 ~mgilN~~I~lpQii~sl~~g~~~~~~-------g-------~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 419 SMGVLNLAIVIPQIIVSLGSGPWDQLF-------G-------GGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHc-------C-------CCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999998888865522 1 112234455555555544 4455667654
No 242
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.25 E-value=4.8e-05 Score=72.12 Aligned_cols=144 Identities=19% Similarity=0.101 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHH---HHHHHHHhhhhccc-chhHHHHHh
Q 018727 85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM---AVLTRFLLGSLNGL-LGPIKAYAC 160 (351)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~r~l~G~~~g~-~~~~~~~~~ 160 (351)
..................+.+.|++|||.....+.++..++.++.+....... ..+...+..++.+. +.....+.+
T Consensus 353 ~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (521)
T KOG0255|consen 353 YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSA 432 (521)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455566667789999999999999999999999988887654332 33333333333333 344588999
Q ss_pred hhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHH-HHHHHHHHHHHHhccccc
Q 018727 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLC-ISLFAFGVTIAAFWLPET 239 (351)
Q Consensus 161 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~ 239 (351)
|.+|+..|..+.+..+....+|++++|.+....... .. ...... .....+...+..+++||+
T Consensus 433 el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~---------------~~--~~~~~~~~~~~~l~~~~~~~~lpet 495 (521)
T KOG0255|consen 433 ELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQM---------------FP--LLGLILFGWLALLLGLLSLLLLPET 495 (521)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------cc--cchHHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999987555320 00 111122 223333444556889999
Q ss_pred cccCCC
Q 018727 240 LHRHND 245 (351)
Q Consensus 240 ~~~~~~ 245 (351)
......
T Consensus 496 ~~~~l~ 501 (521)
T KOG0255|consen 496 KGKPLP 501 (521)
T ss_pred CCCCCc
Confidence 876653
No 243
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=8.6e-05 Score=67.67 Aligned_cols=107 Identities=19% Similarity=0.114 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhcccc
Q 018727 88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE 166 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~ 166 (351)
.++......+++++.+.+.|++|.|+.++++........+.+-.. |-+.++..-.+.|+|.+..... ..+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 566777888999999999999999999999998888877666444 5667788889999999998886 78999999999
Q ss_pred chhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 167 HQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 167 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
.+.+..++.......+.++|..+...+..
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~ 163 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQ 163 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence 99999999888888888888776655544
No 244
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.09 E-value=2.4e-05 Score=73.73 Aligned_cols=194 Identities=18% Similarity=0.157 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHh-hccccc---ccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcCh-HHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKR---EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK-PVI 115 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-~~~ 115 (351)
|.+....+..++.++.++....+.|..... |+-+.. . .++......++..++.++.|.+.-+++|- +.+
T Consensus 310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~------~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~l 383 (599)
T PF06609_consen 310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITE------IGWISSPVGFGSCAGAVILGLLFSKIRHIKWQL 383 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccce------eehhhhhHHHHHHHHHHHHHHHHHHccchhHHH
Confidence 334444555666666666666666655443 433332 3 56777778888889999999999988874 455
Q ss_pred HHHHHHHHHHHHHhhh--hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727 116 IMGTASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192 (351)
Q Consensus 116 ~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 192 (351)
+++.++..+++.+++. .+|....+..-++.|++.|.... ......-..|+++-+++.++....-.+|+.+|..+..-
T Consensus 384 i~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 384 IFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred HHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5666666554444433 34555556677788888777554 46666667899999999999888888888877665433
Q ss_pred hcCCCC---------------CC-----------------------CCc---------ccccccccCccchhHHHHHHHH
Q 018727 193 LAQPAE---------------KY-----------------------PNL---------FSSESLFGKFPYFLPCLCISLF 225 (351)
Q Consensus 193 l~~~~~---------------~~-----------------------~~~---------~gw~~~~~~~~~~~~~~~~~~~ 225 (351)
+....- +. |+. ..-+..| ..+|+.+++.....
T Consensus 464 I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aY-a~ay~~V~~~siaF 542 (599)
T PF06609_consen 464 IFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAY-AHAYRYVYYSSIAF 542 (599)
T ss_pred HHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 321000 00 000 0012233 34678888888888
Q ss_pred HHHHHHHHhccccccc
Q 018727 226 AFGVTIAAFWLPETLH 241 (351)
Q Consensus 226 ~~~~~~~~~~~~e~~~ 241 (351)
+.+.+++.+++++..+
T Consensus 543 G~vaiiaa~fl~d~~~ 558 (599)
T PF06609_consen 543 GVVAIIAALFLGDIDK 558 (599)
T ss_pred HHHHHHHHHHcCChHH
Confidence 8888888888887654
No 245
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.08 E-value=0.00086 Score=61.18 Aligned_cols=271 Identities=11% Similarity=0.097 Sum_probs=133.4
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHhhcc-cccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHH
Q 018727 44 FSIWIIVLCTALPISSLFPFLYFMIKDFQI-AKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (351)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 122 (351)
+.++...++.....-+.....+.+..+..- +.-- .+...-.-.+...+..+..|...||..|.+++-.+.+.-
T Consensus 5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~------~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Q 78 (432)
T PF06963_consen 5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLP------VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQ 78 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHH
Confidence 344555555555555555555555555421 2111 333333444566778888899999999998876664332
Q ss_pred HH----HHHHhh--h--hh----hHHHHHHHH---HHhhhhcccchhHH--HHHhhhcc------ccchhhhHhHHHHHH
Q 018727 123 VI----FNTLFG--L--SV----NFWMAVLTR---FLLGSLNGLLGPIK--AYACEIFR------EEHQALGLSTVSTAW 179 (351)
Q Consensus 123 ~~----~~~~~~--~--~~----~~~~l~~~r---~l~G~~~g~~~~~~--~~~~~~~~------~~~r~~~~~~~~~~~ 179 (351)
-+ ++.+.. + .. +.+....+. .+.|...-....+. ++=-||.. ++.+.+..+...-.=
T Consensus 79 n~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRID 158 (432)
T PF06963_consen 79 NLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRID 158 (432)
T ss_pred HHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHH
Confidence 22 221111 1 11 112222222 22222112222222 22233432 223333333444344
Q ss_pred HhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH-Hhc-------cccccccCCCCCccch
Q 018727 180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFW-------LPETLHRHNDDDDSCD 251 (351)
Q Consensus 180 ~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~e~~~~~~~~~~~~~ 251 (351)
.+.-+++|++.|.+.+ ..+......+.++..++.+.. +++ .|+-..++..++++.+
T Consensus 159 L~ckllaPl~vG~l~t----------------~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~ 222 (432)
T PF06963_consen 159 LFCKLLAPLFVGLLMT----------------FASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESS 222 (432)
T ss_pred HHHHHHHHHHHHHHhh----------------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccc
Confidence 4688999999999987 444454444444444444322 221 2221111111111111
Q ss_pred hhHH------HhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhh
Q 018727 252 VSYD------ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV 325 (351)
Q Consensus 252 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 325 (351)
...+ ..........+.-......|+..++++.++. .+...+.++.-.++...+..|+.+ .|+++..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfla-s~alalLY~TVLsf~~lmt~yl~~------~G~s~~~i 295 (432)
T PF06963_consen 223 SDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLA-SFALALLYFTVLSFGGLMTAYLKS------QGYSPSVI 295 (432)
T ss_pred ccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHH-HHHHHHHHHHHhcCcHHHHHHHHH------CCCCHHHH
Confidence 1000 0000001111111222345666777765544 444445555567788888889888 59999999
Q ss_pred HHHHHHHhhhHHhhhccc
Q 018727 326 GEVLAITGTKVDTHILPF 343 (351)
Q Consensus 326 g~~~~~~~~~~~~~~~~~ 343 (351)
|.+-+...+.++.+.+..
T Consensus 296 gi~R~~gav~Gl~gT~~~ 313 (432)
T PF06963_consen 296 GIFRGLGAVFGLLGTWVY 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988887777765544
No 246
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.03 E-value=6.4e-05 Score=69.26 Aligned_cols=124 Identities=20% Similarity=0.281 Sum_probs=107.3
Q ss_pred HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhh-hhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018727 66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG-LVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144 (351)
Q Consensus 66 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 144 (351)
+....++++..+ .+.+.+...+...+++.+.. .+...+|-|+++.+|++.-.+...+.+++++.|+.+...++
T Consensus 267 yl~~~f~w~~~~------~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~ 340 (463)
T KOG2816|consen 267 YLKAKFGWNKKE------FSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVV 340 (463)
T ss_pred EEeeecCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHH
Confidence 345568888888 88888888888888888776 78888999999999999999999999999999999999888
Q ss_pred hhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 145 LGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 145 ~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
.++.........+.++-+..++++|+++++......+..+++|.+-+.+..
T Consensus 341 ~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 341 VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 877765555568999999999999999999999999999999998887754
No 247
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.93 E-value=0.0012 Score=59.40 Aligned_cols=134 Identities=17% Similarity=0.103 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhc
Q 018727 85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF 163 (351)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~ 163 (351)
+.+.-+-.+...+..+.+.++.+|+..+.=+.++.++..++.++.+++++.+.-+++-++.+++.|..... ..+ +..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence 34555555666777788889999988665555566788888888899999988888888888888877665 444 4466
Q ss_pred cccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHh-cccc
Q 018727 164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPE 238 (351)
Q Consensus 164 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e 238 (351)
++ ..++.+..+.+.++++|+..-..+.+ . ..+.+........+.++..+.++ .+|+
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~--------------g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-L--------------GLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-h--------------CcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 64 24667777777777777766544432 1 34445555555555555544444 3443
No 248
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.77 E-value=0.00036 Score=61.22 Aligned_cols=121 Identities=14% Similarity=0.069 Sum_probs=103.1
Q ss_pred HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc--ChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018727 69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG 146 (351)
Q Consensus 69 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 146 (351)
+.+|.++.+ .|-+.+...+...+.+....+..||.. -+-.+..++.++.-..++.+.++....+..+-.+-.
T Consensus 290 ~rfg~ss~~------~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~s 363 (451)
T KOG2615|consen 290 GRFGYSSMQ------QGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKS 363 (451)
T ss_pred CccCCChhh------heeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence 568888888 888888888888888888888888887 677778888888888888888888888888888888
Q ss_pred hhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 147 ~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+..+...++ ..++....|.++||.+.|+......++-++||.++|.+..
T Consensus 364 f~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 364 FSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 876666665 8888899999999999999999999999999999988875
No 249
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=97.66 E-value=0.00096 Score=60.75 Aligned_cols=284 Identities=14% Similarity=0.117 Sum_probs=138.5
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHh--hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh-----hhcChHHHH
Q 018727 44 FSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGRKPVII 116 (351)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~Grr~~~~ 116 (351)
..+.+.+++++...+.....+|.+.++ -+.|.++ .+...-+ ..- .-.-++|.++.| |+||||.-+
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q------~~~fSla-~~P-fSlKlLWaPiVDs~y~~~~GRRKSWi 74 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQ------QAIFSLA-SYP-FSLKLLWAPIVDSVYSKRIGRRKSWI 74 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhccccCCCChhH------heeeeee-ech-hHHHHhhhhhhhhhcccccCCcchhh
Confidence 356778889999888877788888887 6777776 4322211 000 112345666666 899998755
Q ss_pred HHH-HHHHHHHHHhhhhh----------------------h--HHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhh
Q 018727 117 MGT-ASVVIFNTLFGLSV----------------------N--FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQAL 170 (351)
Q Consensus 117 ~~~-~~~~~~~~~~~~~~----------------------~--~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~ 170 (351)
+-. .+.++..+..+... + ...+....++.-+..+.... +-.+.-.+..+++++.
T Consensus 75 iP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ 154 (544)
T PF13000_consen 75 IPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGY 154 (544)
T ss_pred hHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcch
Confidence 432 33333322222111 0 11222333233333333332 3444555667788887
Q ss_pred hHhHHHHHHHhHHHHHHHhhhhhcCCCC------CCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCC
Q 018727 171 GLSTVSTAWGIGLIIGPALGGFLAQPAE------KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244 (351)
Q Consensus 171 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 244 (351)
+......+.++|.+++..+.-.+.+..- +.|...|. . ..+=. ..+.+.+..++...+.++-+|.+..+.
T Consensus 155 ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~gl---v-tl~~y-l~fwg~~~l~~T~~v~~~k~E~~~~~~ 229 (544)
T PF13000_consen 155 ASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGL---V-TLSGY-LKFWGWVFLIVTILVAFFKKEKPHSES 229 (544)
T ss_pred HHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCe---e-eHHHH-HHHHHHHHHHHHHHHheEeeccccccc
Confidence 7777777777777776665544432100 01111111 1 00100 111122222233344455555442221
Q ss_pred CCC-cc---chhhHHH--hhhhhhh--hhhh---hhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCC
Q 018727 245 DDD-DS---CDVSYDA--LESASAE--VKEE---EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPK 313 (351)
Q Consensus 245 ~~~-~~---~~~~~~~--~~~~~~~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (351)
..+ +. .+...++ .+..+.+ ..++ -.+.-+...+++|-|++..+++.....-....+......+=+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-- 307 (544)
T PF13000_consen 230 LPKIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-- 307 (544)
T ss_pred CccccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH--
Confidence 110 00 0000000 0000000 0000 11112334566788999998888888888777777777665655
Q ss_pred CCCcccCchhhhHHHHHHHh-hhHHhhhcccccc
Q 018727 314 KLGGLNYSTQMVGEVLAITG-TKVDTHILPFKID 346 (351)
Q Consensus 314 ~~~~~~~s~~~~g~~~~~~~-~~~~~~~~~~~~~ 346 (351)
.|++.+..+.+..+.. +-.+++-+.+||.
T Consensus 308 ----kG~~KE~LAl~~li~~P~qii~~~~~~Kws 337 (544)
T PF13000_consen 308 ----KGLSKEDLALLVLIDFPFQIILPYYIGKWS 337 (544)
T ss_pred ----cCCCHHHhHHHHHHhhhHHHHHHHHhhhhh
Confidence 6888888776655433 3333344555543
No 250
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.64 E-value=7.3e-05 Score=62.28 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=75.6
Q ss_pred cccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhH
Q 018727 56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135 (351)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
+-....|++.++.+++++...+ ++.+..+..-...+...+.|-++||-|||+..+.-++-..++++ .-.++.+
T Consensus 52 gDWLQgPYvYyLYstYgFgkG~------IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqY 124 (454)
T KOG4332|consen 52 GDWLQGPYVYYLYSTYGFGKGD------IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQY 124 (454)
T ss_pred hhhhcCceeeeeehhcCccCCc------cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCce
Confidence 4445667777778888998888 88777777777778888999999999999976655555544443 3356788
Q ss_pred HHHHHHHHHhhhhcccchhH--HHHHhhhc
Q 018727 136 WMAVLTRFLLGSLNGLLGPI--KAYACEIF 163 (351)
Q Consensus 136 ~~l~~~r~l~G~~~g~~~~~--~~~~~~~~ 163 (351)
-.++++|++-|+..+....+ .-++.|--
T Consensus 125 kVLmVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 125 KVLMVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred EEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 89999999999987775543 44677765
No 251
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.52 E-value=8.9e-05 Score=66.31 Aligned_cols=147 Identities=17% Similarity=0.080 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcC-hHHHHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTAS 121 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~ 121 (351)
+..+.+.+.......+.....+......-|.+... .|++.....++..+++.+.|.+.||... |.++.+....
T Consensus 268 F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~------aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~ 341 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVF------AGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLF 341 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccc------cchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 33333333333333344444433233334555555 8888899999999999999999999875 4455555555
Q ss_pred HHHHHHHhhh-h---hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 122 VVIFNTLFGL-S---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 122 ~~~~~~~~~~-~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
..++.+.... . ...+.++..-.+.|++.....|. .-+-.|..-+..-++-.|+.++..++-+++-.++.+...+
T Consensus 342 ~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~ 420 (480)
T KOG2563|consen 342 ALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAE 420 (480)
T ss_pred HHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhh
Confidence 5554322221 1 22234444555666655455555 6676776544444667888887777777777777777776
No 252
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.49 E-value=0.00062 Score=61.59 Aligned_cols=109 Identities=16% Similarity=0.208 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh---------hHHHHHHHHHHhhhhcccchhH-HHHHhhhcccc---chhhhHhHHHHHH
Q 018727 113 PVIIMGTASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAW 179 (351)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~---~r~~~~~~~~~~~ 179 (351)
|+++++.++..+|.++..++. +...++++-.+.++|.|..-+. .++.+|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567778888888887744321 2356788888899999998885 99999999865 4667778899999
Q ss_pred HhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccc
Q 018727 180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP 237 (351)
Q Consensus 180 ~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (351)
++|..+++.+.+++.+ +.+|...|.+..+..+++++.++.-.
T Consensus 82 n~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 9999999999999987 66777777777777666666555443
No 253
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.48 E-value=0.0041 Score=58.03 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcC--h----H-HHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHhhh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGR--K----P-VIIMGTASVVIFNTLFGLS---------VNFWMAVLTRFLLGS 147 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Gr--r----~-~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~ 147 (351)
.++..++..+.-.+.+|+.+++=.|.+| | + =+.+++++.+++.+.+.++ .+.+++++..++..+
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~ 389 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF 389 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 6777888877777778877777566532 2 1 1566777777777655431 256778888899999
Q ss_pred hcccchhH-HHHHhhhccccchhhhHhHHHHH-HHhHHHHHHHhhhhhc
Q 018727 148 LNGLLGPI-KAYACEIFREEHQALGLSTVSTA-WGIGLIIGPALGGFLA 194 (351)
Q Consensus 148 ~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l~ 194 (351)
|.-+..|+ .+.+++..|++.||+.+|.+... ..+|..++..+++...
T Consensus 390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~ 438 (493)
T PRK15462 390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTS 438 (493)
T ss_pred HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98888886 99999999999999999998664 3677777777666553
No 254
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=97.47 E-value=0.0061 Score=56.68 Aligned_cols=149 Identities=13% Similarity=0.199 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
+++++.+.+..++..+.++.. -.+.+.+=++....+. +..+=....+ ...+...+..++++|++|.+++-+.
T Consensus 23 ~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvvt~~gae~---I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~ 95 (491)
T PF03219_consen 23 LKKFLPLALMFFFILFNYTIL----RDLKDTLVVTAQGAEV---IPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYII 95 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhcCeEEEecCChhH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 456666666666665554332 2222222111111000 3333332222 3455677889999999999988766
Q ss_pred HHHHHHHHHHhhhh---------hh----------------------HHHHHHHHHHhhh-hcccchhH-HHHHhhhccc
Q 018727 119 TASVVIFNTLFGLS---------VN----------------------FWMAVLTRFLLGS-LNGLLGPI-KAYACEIFRE 165 (351)
Q Consensus 119 ~~~~~~~~~~~~~~---------~~----------------------~~~l~~~r~l~G~-~~g~~~~~-~~~~~~~~~~ 165 (351)
.........++++. ++ .|...+..+..-+ |.-..+.. +.+..|.++.
T Consensus 96 ~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~ 175 (491)
T PF03219_consen 96 IIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTV 175 (491)
T ss_pred HHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 65555544444331 00 1112122222222 11112333 7889999999
Q ss_pred cchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 166 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
++-.+..++...+.++|.+++..+..++.+
T Consensus 176 ~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 176 EEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877765
No 255
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.001 Score=59.97 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcCh----HHHHHHHHHHHH-------HHHHhh-hhhhHHHHHHHHHHhhhhccc
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRK----PVIIMGTASVVI-------FNTLFG-LSVNFWMAVLTRFLLGSLNGL 151 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~~-------~~~~~~-~~~~~~~l~~~r~l~G~~~g~ 151 (351)
..++..+...+..+|.+++|.++||+-|+ ....+.-+..+. ...+.. ...+...+.+..++.|.....
T Consensus 285 ~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~ 364 (493)
T KOG1330|consen 285 TLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISW 364 (493)
T ss_pred chhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 55666777788899999999999994321 122222111111 111111 122222333334455553333
Q ss_pred ch--hHHHHHhhhccccchhhhHhHHHHHH-HhHHHHHHHhhhhhcCCC
Q 018727 152 LG--PIKAYACEIFREEHQALGLSTVSTAW-GIGLIIGPALGGFLAQPA 197 (351)
Q Consensus 152 ~~--~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~l~~~~ 197 (351)
.. +...+..|+.|+++|.+++++-.... ..|.+-+|.+.|.+.+..
T Consensus 365 ~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 365 FNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred cccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 22 23567789999999999999875544 456666776888888754
No 256
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=97.30 E-value=0.014 Score=55.46 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHhhccc-cchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hcChHHHHH
Q 018727 40 ITELFSIWIIVLCTALPI-SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIM 117 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~ 117 (351)
++....+.....+..+.. +.....+.++..+++.+... +.-..+.+.-......+.+++++|- +||-+++.+
T Consensus 36 ~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~------aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~ 109 (571)
T KOG1237|consen 36 WLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGG------AANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINI 109 (571)
T ss_pred hHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHH------HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 343333333333333333 33456667888888888876 7777777777778888999999996 488899999
Q ss_pred HHHHHHHHHHHhhhhhh-------------------------HHHHHHHHHHhhhhcccchhH-HHHHhhhcc---c-cc
Q 018727 118 GTASVVIFNTLFGLSVN-------------------------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFR---E-EH 167 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~-------------------------~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~---~-~~ 167 (351)
+.++..++..+..+... ...++...-+..+|.|..-++ .++-+|-++ + +.
T Consensus 110 ~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~ 189 (571)
T KOG1237|consen 110 GSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV 189 (571)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh
Confidence 98888877544433111 123444555566677777775 888888888 3 22
Q ss_pred hh--hhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccc
Q 018727 168 QA--LGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF 210 (351)
Q Consensus 168 r~--~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~ 210 (351)
+. .-+..+....++|..++-.+..++.+ ..||...|
T Consensus 190 ~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~-------~~~w~lgf 227 (571)
T KOG1237|consen 190 KGIPSFFNWFYFSQNGGALLAQTVLVYIQD-------NVGWKLGF 227 (571)
T ss_pred hCcccchhHHHHHHHHHHHHHHHHHHhhhh-------cccceeec
Confidence 23 56677888999999999988888876 56664444
No 257
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.23 E-value=0.00073 Score=62.32 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhh-h---------hhHHHHHHHHHHhhhhccc-c
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-S---------VNFWMAVLTRFLLGSLNGL-L 152 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-~---------~~~~~l~~~r~l~G~~~g~-~ 152 (351)
.+.+..+..++..++..+.....-+..-|+++..+.++..+..+.... . ++.+..+.--++..+..+. +
T Consensus 257 ~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~ 336 (433)
T PF03092_consen 257 YGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAF 336 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHH
Confidence 666666677777778777777666778888888877776665543221 1 1112222223344443333 4
Q ss_pred hhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCccccc-ccccCccchhHHHHHHHHHHHHHH
Q 018727 153 GPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE-SLFGKFPYFLPCLCISLFAFGVTI 231 (351)
Q Consensus 153 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~-~~~~~~~~~~~~~~~~~~~~~~~~ 231 (351)
.|...+++|++|+..-|+.+++.....++|..++..++..+.+. ++.. ..| .+.+...+++.+..++.+.
T Consensus 337 mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~-------~~vt~~~f--~~l~~lili~~~~~ll~l~ 407 (433)
T PF03092_consen 337 MPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMEL-------FGVTRDDF--SNLWLLILICSVIQLLPLP 407 (433)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCcccc--cchHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999999999999999988873 3321 112 1222333444444445555
Q ss_pred HHhccccccc
Q 018727 232 AAFWLPETLH 241 (351)
Q Consensus 232 ~~~~~~e~~~ 241 (351)
...++|+.++
T Consensus 408 ll~lLp~~~~ 417 (433)
T PF03092_consen 408 LLFLLPPQKR 417 (433)
T ss_pred HHHHcCCCch
Confidence 5556776543
No 258
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.03 E-value=0.018 Score=51.92 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHH
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN---TLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYA 159 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~ 159 (351)
..+....+.+|-+++.--...+ |+.+-+.+.+.-++-.+.. ...-+.++.|..++.-+..|+..|...+ ....+
T Consensus 283 Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I 360 (402)
T PF02487_consen 283 YRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRI 360 (402)
T ss_pred HHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6666777777766665433222 4433333222222222222 2233457888888888999997666555 57777
Q ss_pred hhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727 160 CEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (351)
Q Consensus 160 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 193 (351)
.|-.++++|..++|....+-++|..++.+++-.+
T Consensus 361 ~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 361 SEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888999999999999999999999998887554
No 259
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.024 Score=52.09 Aligned_cols=107 Identities=17% Similarity=0.301 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhh---hcChHHHHHHHHHHHHHHHHhhhh------------------hhHHHHHHHH
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADR---YGRKPVIIMGTASVVIFNTLFGLS------------------VNFWMAVLTR 142 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr---~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r 142 (351)
.++..-...++..++..+.+.+++| +||++.+.++..+..++.++..+. +++....+.-
T Consensus 281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence 4444445556667777777788765 688999888887777777665431 2345566677
Q ss_pred HHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727 143 FLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG 191 (351)
Q Consensus 143 ~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 191 (351)
++.|++-+..... +.++.+.+ +++|..+.++.-.-..+++.++-+...
T Consensus 361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8888888777775 88999988 566888888887777777766555543
No 260
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=96.72 E-value=0.063 Score=49.15 Aligned_cols=149 Identities=11% Similarity=0.201 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
+++++.+.+..++..+.++ .+-.+.+.+-++....+. +.++-+...+ +.++..++..++.++.-|++++-..
T Consensus 26 ~~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~---I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~ 98 (509)
T COG3202 26 LKKFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAES---ISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchh---hHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 4556666666665555443 334455555554222111 5555555555 5677888999999999999988776
Q ss_pred HHHHHHHHHHhhhh---------hh-----------H------------HHHHHHHHHhhh-hcccchhH-HHHHhhhcc
Q 018727 119 TASVVIFNTLFGLS---------VN-----------F------------WMAVLTRFLLGS-LNGLLGPI-KAYACEIFR 164 (351)
Q Consensus 119 ~~~~~~~~~~~~~~---------~~-----------~------------~~l~~~r~l~G~-~~g~~~~~-~~~~~~~~~ 164 (351)
+.......+++++. ++ . |...+...+.=+ +.=..+-. .....|.+.
T Consensus 99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt 178 (509)
T COG3202 99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT 178 (509)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66666666555541 11 0 111111111111 11112223 678889999
Q ss_pred ccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 165 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
.++-.+-+++++...+++..++..+..++..
T Consensus 179 ~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 179 IEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988888876
No 261
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=96.69 E-value=0.002 Score=59.24 Aligned_cols=83 Identities=23% Similarity=0.409 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH-HHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG-TAS 121 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~-~~~ 121 (351)
+..+=+.++......+.+.|.++.+.+++|+++++ .|.+...--+..+++.|++|+++||+-+||.++++ .++
T Consensus 13 l~~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~------~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~ 86 (618)
T KOG3762|consen 13 LIVAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAV------VGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLL 86 (618)
T ss_pred hheeeeeeeeeeecccccchHHHHHHHHcCCCHHH------hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHH
Confidence 33333444555667788889999999999999999 99999999999999999999999999877665555 555
Q ss_pred HHHHHHHhhh
Q 018727 122 VVIFNTLFGL 131 (351)
Q Consensus 122 ~~~~~~~~~~ 131 (351)
...+.++..+
T Consensus 87 ~v~a~fll~f 96 (618)
T KOG3762|consen 87 SVTATFLLVF 96 (618)
T ss_pred HHHHHHheee
Confidence 5555555444
No 262
>PRK03612 spermidine synthase; Provisional
Probab=96.64 E-value=0.11 Score=49.17 Aligned_cols=120 Identities=15% Similarity=0.112 Sum_probs=65.9
Q ss_pred HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHH---HHHHHhhhhhh----H-HHHH
Q 018727 68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV---IFNTLFGLSVN----F-WMAV 139 (351)
Q Consensus 68 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---~~~~~~~~~~~----~-~~l~ 139 (351)
..-+|-+... .+.+.+++..+.++|+.+++++.++.-++.. .+-..+.. ++..+...... . ..++
T Consensus 42 ~~~~G~s~~~------~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~ 114 (521)
T PRK03612 42 SYLLGDSVTQ------FSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLY 114 (521)
T ss_pred HHHhCchHHH------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345766667 8899999999999999998887644332222 11111111 11111111111 1 1122
Q ss_pred HHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 140 ~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
...++.++..|...|. ..+..+. ..++-+...|-.+....+|+++|.++.+++.-
T Consensus 115 ~~~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 115 VLVLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 2334455555555554 3333222 22234567788888888999999888877763
No 263
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=96.52 E-value=0.011 Score=51.56 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=95.8
Q ss_pred HHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHh
Q 018727 94 GRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLS 173 (351)
Q Consensus 94 ~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~ 173 (351)
.+.+.-++.=.+.|..-.|+++++-.+.......+.-+.++.+.+=+.-++.|...+.-..-++++-+..+++++.++.+
T Consensus 54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~ 133 (433)
T KOG3810|consen 54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTG 133 (433)
T ss_pred HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHH
Confidence 44555556667899999999998877777777777778888887766777666654433334788888889999999999
Q ss_pred HHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccc
Q 018727 174 TVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH 241 (351)
Q Consensus 174 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 241 (351)
....+.-.|-..|..++-.+.... ...+.....+......+..+..+++|..++
T Consensus 134 y~RaA~L~g~~~g~vlaQlLvs~~--------------~~sy~~LN~ISL~~~~ia~~~A~fLP~v~r 187 (433)
T KOG3810|consen 134 YCRAAFLVGKFVGSVLAQLLVSLE--------------TLSYTTLNYISLAEVTIAVLLALFLPRVKR 187 (433)
T ss_pred HhHHHHHHHhHHHhHHHHHHhhhc--------------ccchhhhchhhHHHHHHHHHHHhhCCCCch
Confidence 888888888888887776666411 334445555555555666677777777663
No 264
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.41 E-value=0.051 Score=49.81 Aligned_cols=127 Identities=8% Similarity=-0.119 Sum_probs=86.9
Q ss_pred hhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhh---h---h-
Q 018727 61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---S---V- 133 (351)
Q Consensus 61 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~---~- 133 (351)
...+..+...-|+++.. +|..-+...+....+.+...++.+|+|..|.=.++...-..+..++.. . +
T Consensus 278 ~~lmt~yl~~~G~s~~~------igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~ 351 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSV------IGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF 351 (432)
T ss_pred cHHHHHHHHHCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 44454555556999998 999999999999999999999999999988877776544443333221 1 1
Q ss_pred ---hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727 134 ---NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (351)
Q Consensus 134 ---~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 193 (351)
+...++.+-.+.=+|.=.+..+ .-++-|..|+++||...|.-....++-.++...+.-.+
T Consensus 352 ~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 352 SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1122222222222231123344 77889999999999999999988888888887765433
No 265
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.32 E-value=0.00098 Score=63.03 Aligned_cols=149 Identities=14% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhhc--ChHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYG--RKPVII 116 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~~~ 116 (351)
+.+....++.....+....+.++.|. +..+|+.+.++ ++++..+..+ +.++|.+++|++..|+. .|..+.
T Consensus 305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~------A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~ 378 (539)
T PF03137_consen 305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQ------ASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAK 378 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHhhhhcchhheehheEEEEEEEecCcHHHHHH
Confidence 33445556666667777778888874 55679999888 7777766555 66789999999999985 344444
Q ss_pred HHHHHHHHHHHHh---hh-----------hh----------------------------------------hHHHHHHHH
Q 018727 117 MGTASVVIFNTLF---GL-----------SV----------------------------------------NFWMAVLTR 142 (351)
Q Consensus 117 ~~~~~~~~~~~~~---~~-----------~~----------------------------------------~~~~l~~~r 142 (351)
...+...++.++. .+ .. .+..+++..
T Consensus 379 ~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~ 458 (539)
T PF03137_consen 379 FCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILL 458 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHH
Confidence 4333333332220 00 00 011222222
Q ss_pred HHhhhhccc-chhHHHHHhhhccccchhhhHhHHHHHHH-hHHHHHHHhhhhhcC
Q 018727 143 FLLGSLNGL-LGPIKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALGGFLAQ 195 (351)
Q Consensus 143 ~l~G~~~g~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~ 195 (351)
++.-+..+. ..|...++-+.+|+++|..++|+...... +|.+=||++-|.+.|
T Consensus 459 ~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD 513 (539)
T PF03137_consen 459 FILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIID 513 (539)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHh
Confidence 222222222 33345556688999999999999876555 688889999999988
No 266
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.19 Score=45.18 Aligned_cols=136 Identities=13% Similarity=0.124 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 122 (351)
.+..++..+.....++...+..+++.+++-.+..+ ............+...+....-..+.-|..+|-..... +..
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~---~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~-~~~ 95 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNS---KNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLS-LIA 95 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 34445555555667788888888888877544332 11122223333344445555555566562222111111 111
Q ss_pred HHHHHHh--hh-------hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHH
Q 018727 123 VIFNTLF--GL-------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGL 183 (351)
Q Consensus 123 ~~~~~~~--~~-------~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 183 (351)
.+....+ .. ...+...++.-.+.+.+.|..... ....+ .+|+|.-...++-.+.++.+-+
T Consensus 96 il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~-~~P~~ytqavm~G~a~aG~l~S 165 (406)
T KOG1479|consen 96 ILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAG-LFPSEYTQAVMSGQALAGTLTS 165 (406)
T ss_pred HHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhh-cCCHHHHHHHHhcchhHhHHHH
Confidence 1111111 11 123344445555666666665554 55554 4566654444443333333333
No 267
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.10 E-value=0.14 Score=47.21 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcCh-------HHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHhh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRK-------PVIIMGTASVVIFNTLFGLS----------VNFWMAVLTRFLLG 146 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~G 146 (351)
.++..+...+.-.+.+++..++--+.+++ .-+-+++.+++.+.++.... .+.++++...++++
T Consensus 326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s 405 (498)
T COG3104 326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS 405 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 56777887777788888877777775443 23445566666665544332 35788889999999
Q ss_pred hhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727 147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192 (351)
Q Consensus 147 ~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 192 (351)
+|.=+.+|. ..+++...|++-.+..++.+......|+.++..+++.
T Consensus 406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~ 452 (498)
T COG3104 406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGL 452 (498)
T ss_pred HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence 998888886 9999999999999999999888888888887777663
No 268
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=95.97 E-value=0.025 Score=52.22 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=37.6
Q ss_pred HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 155 IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 155 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
..+.-+|...+++++++.+.++.....+..++|++...+..
T Consensus 409 ~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~ 449 (488)
T KOG2325|consen 409 LDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT 449 (488)
T ss_pred HHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence 47788999999999999999999999999999999988877
No 269
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=95.39 E-value=0.25 Score=45.65 Aligned_cols=107 Identities=14% Similarity=0.029 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcCh--HHHH--HHHHHHHHHHHHhhhh---------hhHHHHHHHHHHhhhhcc
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRK--PVII--MGTASVVIFNTLFGLS---------VNFWMAVLTRFLLGSLNG 150 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~--~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~g 150 (351)
.-.....++++-.+|..+..+.. .-++| ++.+ ++-++.....++|..- ++-+..++..++.|+..|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 45667778888888887665431 11222 3332 2233444444444322 355666677888999988
Q ss_pred cchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727 151 LLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG 191 (351)
Q Consensus 151 ~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 191 (351)
..... ..+..+..++++|..+..+...+..+|..+|..++-
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87774 777888888899998888989999999888887753
No 270
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=95.29 E-value=0.043 Score=53.36 Aligned_cols=80 Identities=11% Similarity=0.201 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhhcC--hHHHHH
Q 018727 42 ELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGR--KPVIIM 117 (351)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Gr--r~~~~~ 117 (351)
.++...+..++..........++|.+.+ ++|++..+ .+++.....+ +.+++.+++|+++||+++ |+.+.+
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~------ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~ 404 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAE------ANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYF 404 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHH
Confidence 3444555555666666677778876654 68999988 8888887665 568999999999999984 466666
Q ss_pred HHHHHHHHHH
Q 018727 118 GTASVVIFNT 127 (351)
Q Consensus 118 ~~~~~~~~~~ 127 (351)
+.++..++.+
T Consensus 405 ~~~~~~~~~~ 414 (633)
T TIGR00805 405 AICLSTLSYL 414 (633)
T ss_pred HHHHHHHHHH
Confidence 6655555543
No 271
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=94.32 E-value=0.47 Score=41.35 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=50.4
Q ss_pred HHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhc
Q 018727 92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF 163 (351)
Q Consensus 92 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~ 163 (351)
......++++.+.+..++|-|++++++..........- +-+.+..++-.-...|++.+..... -+|++++-
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 34456667777799999999999998887766543322 3456778888888899988876654 55555543
No 272
>PF12832 MFS_1_like: MFS_1 like family
Probab=94.28 E-value=0.13 Score=34.72 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727 285 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP 342 (351)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~ 342 (351)
+..-..+++++....++..+++.|+.+ .|+++.++|.+.++..+..+++..+
T Consensus 3 ~~lk~~yf~~f~~~g~~~Pfl~~~~~~------~Gl~~~~iGil~~i~~~~~~~~~pl 54 (77)
T PF12832_consen 3 LPLKAFYFFYFAALGCLYPFLPLYLKQ------LGLSPSQIGILSAIRPLIRFLAPPL 54 (77)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHhhhh------cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888899988887 7999999999999988888765543
No 273
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=94.20 E-value=2.2 Score=39.49 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHH
Q 018727 134 NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA 188 (351)
Q Consensus 134 ~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 188 (351)
.++..++.-++.|++.+..... .++.+ .+|++. ++.+..+.+++++++.+
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~ 155 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSL 155 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHH
Confidence 4555566667778877776664 55554 677653 33344444444444443
No 274
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=94.17 E-value=1.6 Score=39.68 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=69.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH--HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHH
Q 018727 81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG--TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKA 157 (351)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~ 157 (351)
..+-|.+-++..+..+++.+..|++..++.+..-+.++ .++.+...++++..++.|...++.++.+.......+ +..
T Consensus 284 ~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~ 363 (412)
T PF01770_consen 284 SVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASF 363 (412)
T ss_pred cccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888888888899999999997777775544433 445555566777888999988888877665444444 456
Q ss_pred HHhhhccccchhhhHhHHHHH
Q 018727 158 YACEIFREEHQALGLSTVSTA 178 (351)
Q Consensus 158 ~~~~~~~~~~r~~~~~~~~~~ 178 (351)
-++.....+.-+..+|+..+.
T Consensus 364 qIA~~l~~e~yaLVFGiNtf~ 384 (412)
T PF01770_consen 364 QIAKNLSEERYALVFGINTFV 384 (412)
T ss_pred HHHHhccccceeeeeeeHHHH
Confidence 666666677777787776553
No 275
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=93.10 E-value=0.03 Score=49.18 Aligned_cols=105 Identities=19% Similarity=0.154 Sum_probs=2.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhh-hcChHHHHHH--HHHHHHHHHHhhh----------hhhHHHHHHHHHHhhhhcccc
Q 018727 86 YVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMG--TASVVIFNTLFGL----------SVNFWMAVLTRFLLGSLNGLL 152 (351)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~--~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G~~~g~~ 152 (351)
.....++++-.+|....++.-=+ -.+|++...+ -++.....+++.. .++-+..++.-++.|+..|..
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667888888888887764211 1344444332 2333333333311 234456666778889988887
Q ss_pred hhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727 153 GPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG 190 (351)
Q Consensus 153 ~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 190 (351)
... ..+..+..++++|..+-.+...+..+|-.+|..++
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 775 77888888899998888888888888888887665
No 276
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=91.74 E-value=3.2 Score=37.64 Aligned_cols=107 Identities=18% Similarity=0.092 Sum_probs=73.2
Q ss_pred hhHHHHHH-HHHHHHHhhhhhhhhhhhhcChHHHHHH--HHHHHHHHHHhh------hhhhHHHHHHHHHHhhhhcccch
Q 018727 83 YAGYVGSS-FMFGRALTSVFWGLVADRYGRKPVIIMG--TASVVIFNTLFG------LSVNFWMAVLTRFLLGSLNGLLG 153 (351)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~~~~g~l~dr~Grr~~~~~~--~~~~~~~~~~~~------~~~~~~~l~~~r~l~G~~~g~~~ 153 (351)
+.-+...+ +++...+|.+.+.++-++ +||...+.. -++..-...+|- .-.+-+.++..-.+.|+..|-..
T Consensus 283 y~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt 361 (406)
T KOG1479|consen 283 YALLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT 361 (406)
T ss_pred hHHHHHHHHhHHHHHhhhhhhhcccCC-CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence 35555566 888889998888877665 344433322 223333333222 23456677788888999999888
Q ss_pred hH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727 154 PI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG 190 (351)
Q Consensus 154 ~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 190 (351)
.+ ..+..+..|++++-.+-.+.......|..+|..++
T Consensus 362 sl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 362 SLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred hheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 76 88888899999888887788888888887777665
No 277
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=91.52 E-value=1.9 Score=37.44 Aligned_cols=175 Identities=13% Similarity=0.063 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHhhcccccc--------cc-hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHH
Q 018727 44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKRE--------ED-IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV 114 (351)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~ 114 (351)
...|+..+++++.+-.+....-++..+-.-++.. .+ ...-.|.+.-+-.+-..+..+.+..+.||+---.=
T Consensus 15 ~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~~R 94 (409)
T KOG3880|consen 15 VAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFGFR 94 (409)
T ss_pred hHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhcccchH
Confidence 3456666677776655555444444332110000 00 00112333344445556667777778888643333
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727 115 IIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (351)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (351)
+.+..++.+.+..+.+++++.++-+.+-.+..++.|......--++..+++. ..+.++.+.+.++.+|..--..+.
T Consensus 95 i~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y~~~----~i~~WSSGTGgAGliGa~SYa~lT 170 (409)
T KOG3880|consen 95 IALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRYPSI----VIAGWSSGTGGAGLIGASSYAFLT 170 (409)
T ss_pred HHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccCCCc----eeccccCCCCcchhhhhhHHHHHh
Confidence 3344567777888889999999888888888887777655433344455433 233344444444445543333333
Q ss_pred CCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcc
Q 018727 195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL 236 (351)
Q Consensus 195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (351)
+. + +...+...++...+.++....++++
T Consensus 171 ~~-------------~-~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 171 SW-------------A-NLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred hh-------------c-CCChhhHHHHHHHHHHHHHHHHHhe
Confidence 20 1 3444555556555555555554443
No 278
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=90.79 E-value=8 Score=36.19 Aligned_cols=95 Identities=22% Similarity=0.227 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChH--HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKP--VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYAC 160 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~ 160 (351)
-|.+-++..+..++.++..|++-.++.+-- .+.+..++.+...++++..+|.|..+++.++.+.......++ ..-++
T Consensus 300 NG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA 379 (511)
T TIGR00806 300 NGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIA 379 (511)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888999999999977775532 333334555555677778899999999998887776665554 77777
Q ss_pred hhccccchhhhHhHHHHH
Q 018727 161 EIFREEHQALGLSTVSTA 178 (351)
Q Consensus 161 ~~~~~~~r~~~~~~~~~~ 178 (351)
.....+.-|..+|+..+.
T Consensus 380 ~~L~~~~~aLvFGiNtfv 397 (511)
T TIGR00806 380 SSLSKELCALVFGINTFV 397 (511)
T ss_pred HHhcccceEEEEecHHHH
Confidence 777777778888887653
No 279
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=88.64 E-value=2.6 Score=38.71 Aligned_cols=110 Identities=17% Similarity=0.077 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhc-
Q 018727 86 YVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF- 163 (351)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~- 163 (351)
|-..++.+...+.+...-+++||+|-|+.+..+.....++..+.+..++.+....-+-..|+-.+....+ +..+++..
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~ 415 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI 415 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence 4455666777888999999999999776666666656666666666777777777777777533332221 22111111
Q ss_pred --------------------c--ccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 164 --------------------R--EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 164 --------------------~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
. ...+|...|+.+....+.+++.....|.+.+
T Consensus 416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~ 469 (498)
T KOG0637|consen 416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQ 469 (498)
T ss_pred hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhh
Confidence 1 1224566667788888888887777777776
No 280
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=85.69 E-value=0.85 Score=38.46 Aligned_cols=106 Identities=12% Similarity=-0.015 Sum_probs=54.1
Q ss_pred cchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCC
Q 018727 166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245 (351)
Q Consensus 166 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 245 (351)
|+|+........+.++|.++.-..--...+. +. ..+.+|+..+.+.+++.++-++.+..+ +++-....
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~----------~~-~~~~~W~~I~si~~lL~~IpLIly~if-Gk~fd~~~ 69 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSV----------VI-ALTNNWQWILSIFILLIFIPLILYIIF-GKNFDIYS 69 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchH----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccC
Confidence 4566666666777788887764442111110 00 115567777777776666655555544 22211111
Q ss_pred CCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHH
Q 018727 246 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFS 295 (351)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 295 (351)
++ ++++. ++.....+.+..+.+|++..|..++.+..+-
T Consensus 70 ~~-~k~~k-----------~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL 107 (267)
T PF07672_consen 70 PK-EKQEK-----------ENSTLSKKPSYKSILKEKETWKWILIYGIWL 107 (267)
T ss_pred cc-ccccc-----------ccccccccchHHHHHccchHHHHHHHHHHHh
Confidence 11 00000 0001123356788899998888766665543
No 281
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=85.59 E-value=4 Score=38.01 Aligned_cols=53 Identities=13% Similarity=0.074 Sum_probs=38.2
Q ss_pred HHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 143 FLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 143 ~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
++.-+..-...+ ..++-+.+.+|..=|++|.+.+...++|+---..+.-.+.+
T Consensus 413 ~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 413 VLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 444444434444 48888999999999999999999999987655555545544
No 282
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.93 E-value=0.89 Score=44.35 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhccccchhhhHHHH-HHhhcccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhhc--ChHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYG--RKPVIIMG 118 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~~~~~ 118 (351)
+....+...+.......+.+++|.+ .++|+.+.+. +..++....+ +.++|.+++|++..|+. .|....+.
T Consensus 394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~------An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~ 467 (735)
T KOG3626|consen 394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASL------ANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFV 467 (735)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHH------HHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHH
Confidence 3355666677777788888899854 5578999888 7777765554 44678889999999874 34444444
Q ss_pred HHHHHHH
Q 018727 119 TASVVIF 125 (351)
Q Consensus 119 ~~~~~~~ 125 (351)
++...+.
T Consensus 468 ~~~~~l~ 474 (735)
T KOG3626|consen 468 IVCSVLS 474 (735)
T ss_pred HHHHHHH
Confidence 4433333
No 283
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=81.89 E-value=7 Score=33.14 Aligned_cols=99 Identities=24% Similarity=0.366 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhh-hcChHHHH----HHHHHHHHHHHHhhh-h----hhHHHHHHHHHHhhhh-cccc
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII----MGTASVVIFNTLFGL-S----VNFWMAVLTRFLLGSL-NGLL 152 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~----~~~~~~~~~~~~~~~-~----~~~~~l~~~r~l~G~~-~g~~ 152 (351)
.....-++..+..+|....|..... +.||+.+. .+.++..+..++... . .+...+++.-++.|++ .|..
T Consensus 143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555556667777888888877753 45666544 223344443333211 1 2356677777788875 5554
Q ss_pred hhHHHHHhhh--ccccchhhhHhHHHHHHHhHHHH
Q 018727 153 GPIKAYACEI--FREEHQALGLSTVSTAWGIGLII 185 (351)
Q Consensus 153 ~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~ 185 (351)
.+..-.--|. ..+++-|.. ++..+++|-++
T Consensus 223 ~ViL~lPhEyK~~~pk~ig~~---Fg~iWGfGY~~ 254 (267)
T PF07672_consen 223 GVILNLPHEYKGYNPKKIGIQ---FGLIWGFGYIF 254 (267)
T ss_pred HHHhcChhhhcCCCcceehhH---HHHHHHHHHHH
Confidence 4433322232 223333444 34455555443
No 284
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=81.24 E-value=49 Score=31.12 Aligned_cols=80 Identities=10% Similarity=0.144 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHH
Q 018727 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (351)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 122 (351)
+..+++..++.+...+.+........++..-++ ++.+-..|.+.....+...+.+++.+++.+|+|-+....+.-++.
T Consensus 266 L~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~--~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~ 343 (472)
T TIGR00769 266 ILDLALLVIAYGISINLVEVTWKSKLKAQYPSP--NEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVM 343 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334455555555555555444444444433222 222333555666666666777788899999999997766654444
Q ss_pred HH
Q 018727 123 VI 124 (351)
Q Consensus 123 ~~ 124 (351)
.+
T Consensus 344 li 345 (472)
T TIGR00769 344 LL 345 (472)
T ss_pred HH
Confidence 33
No 285
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=80.70 E-value=22 Score=30.57 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcCh--HHHHHHHHHHHHHHHHhhh----hh---hHHHHHHHHHHhhhhcccchh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIMGTASVVIFNTLFGL----SV---NFWMAVLTRFLLGSLNGLLGP 154 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~----~~---~~~~l~~~r~l~G~~~g~~~~ 154 (351)
-|.+.+.++++..+|+-+...+..|-..| ..+.+..+..++...+.-+ ++ +...-+++..+.-.+.|.+.|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 68888999999999998888877765544 3444444444443332222 11 222223344444456778888
Q ss_pred H-HHHHhhhccccchhhhHhHHHHHH
Q 018727 155 I-KAYACEIFREEHQALGLSTVSTAW 179 (351)
Q Consensus 155 ~-~~~~~~~~~~~~r~~~~~~~~~~~ 179 (351)
. ..+-+...|.+.|.+.+..+..-.
T Consensus 364 SimkmRsqyIPEearstimNfFRvPL 389 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPL 389 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechh
Confidence 5 778888999999999988765433
No 286
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=80.65 E-value=15 Score=26.81 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHH
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 125 (351)
.+.......++..++..+.+.+.|..|.+..+.+...+..++
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 556666777888888889999999888877666554444433
No 287
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.48 E-value=11 Score=26.79 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhh-cChHHHHHHH
Q 018727 85 GYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGT 119 (351)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~ 119 (351)
+.-.+.=+++..+.....||+.||| |-++..++..
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~ 80 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVF 80 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3444555666777777889999986 5555444433
No 288
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=74.32 E-value=16 Score=31.98 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 193 (351)
++..+.-.+..+.++++..++.-+.-|+-+|...+ ..--+.+-.++++|-.+++.....-++|..++.+++-.+
T Consensus 327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 34444445566788888888888889985555443 444445555678899999999888888888888776544
No 289
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=68.19 E-value=4.3 Score=34.40 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=39.2
Q ss_pred HHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhh---------hhhhcChHHH
Q 018727 51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLV---------ADRYGRKPVI 115 (351)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l---------~dr~Grr~~~ 115 (351)
+.+-.....-.+++-.+.++.+++++. ...++.+..+.-++..++.|.. .||+|||+..
T Consensus 27 mlNDitAScWFTYlllfltqiglsp~~------~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w 94 (412)
T KOG4830|consen 27 MLNDITASCWFTYLLLFLTQIGLSPSS------RAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW 94 (412)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcCCcch------hHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence 333333333344444566778888887 7777777777888888887644 4689998754
No 290
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=65.16 E-value=1.2e+02 Score=28.26 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=79.5
Q ss_pred CchHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (351)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 117 (351)
.+..+...+.+-.++..++.....|.+ +..+++++.++ ...+.+.-.+...++.++--....+.|-|-....
T Consensus 13 ~~~~~~~~lglQH~lamfg~~V~VPli--vg~a~~l~~~~------~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~l 84 (451)
T COG2233 13 LPLGKLLLLGLQHLLAMFGATVLVPLL--VGLALGLSAED------TAYLISADLLASGIGTLLQLLGTGPGGSGLPSYL 84 (451)
T ss_pred CChHHHHHHHHHHHHHHHhcchHhhHH--hccCCCCCHHH------HHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeE
Confidence 344556667777777777766555554 45567888888 8888888888888888876653334555544444
Q ss_pred HHHHHHHHHHHhhh-h--hhHHHHHHHHHHhhhhcccchhHHH-HHhhhccccchhhhHh
Q 018727 118 GTASVVIFNTLFGL-S--VNFWMAVLTRFLLGSLNGLLGPIKA-YACEIFREEHQALGLS 173 (351)
Q Consensus 118 ~~~~~~~~~~~~~~-~--~~~~~l~~~r~l~G~~~g~~~~~~~-~~~~~~~~~~r~~~~~ 173 (351)
+.-...++.+.... . ......+.+-+..|+..-...+... .+...+||-.-|..+-
T Consensus 85 G~sFafi~p~i~~~~~~g~~~~~~~G~ii~ag~~~~li~~~~~~~l~rlfPPvVtG~Vi~ 144 (451)
T COG2233 85 GSSFAFVAPMIAIGGTTGDGIAALLGGIIAAGLVYFLISPIVKIRLARLFPPVVTGPVVL 144 (451)
T ss_pred echHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEee
Confidence 44444444433322 2 2355666666666665555555544 7888888887775543
No 291
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=64.16 E-value=59 Score=29.44 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=9.4
Q ss_pred cccccccchHHHHHHHHH
Q 018727 276 KSLLKNWPLMSSIIVYCV 293 (351)
Q Consensus 276 ~~~l~~~~~~~~~~~~~~ 293 (351)
++.+++|.++..+++..+
T Consensus 239 ~~~~~nP~~~a~~lgli~ 256 (385)
T PF03547_consen 239 LKLFKNPPLIAIILGLII 256 (385)
T ss_pred HHHHhCcHHHHHHHHHHH
Confidence 344566666655444443
No 292
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=64.10 E-value=51 Score=29.59 Aligned_cols=109 Identities=14% Similarity=0.130 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHH--HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVII--MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYAC 160 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~ 160 (351)
-|..-++..+..+++.+..|.+--++.|..-+. .+...-+...++++.+++.|..+++.++.........+ +..-++
T Consensus 273 NG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA 352 (433)
T KOG3810|consen 273 NGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIA 352 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHH
Confidence 456667777788999999999988887774443 33444444455666778888888877776655444444 466677
Q ss_pred hhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 161 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+....|.-|..+|+..+. +-++=.++.-.+.+
T Consensus 353 ~nL~~e~~gLvFGiNTFv---Al~lQsilT~iVvd 384 (433)
T KOG3810|consen 353 RNLSSELFGLVFGINTFV---ALILQSILTLIVVD 384 (433)
T ss_pred HhhhhhhheeeeehHHHH---HHHHHHhheEEEEc
Confidence 777778778888876543 33344444444444
No 293
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=63.60 E-value=81 Score=25.75 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhhhhhh
Q 018727 89 SSFMFGRALTSVFWGLV 105 (351)
Q Consensus 89 ~~~~~~~~~~~~~~g~l 105 (351)
....++..+|..+++.+
T Consensus 53 ~~~i~~F~~G~~~~~~i 69 (209)
T PF06912_consen 53 LLAILSFILGAFLAGLI 69 (209)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445556677777777
No 294
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=63.08 E-value=15 Score=25.27 Aligned_cols=43 Identities=14% Similarity=0.065 Sum_probs=35.1
Q ss_pred HhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 295 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
...-+.+...+|...++ .++|..+.|++-+.+.++..++.+..
T Consensus 5 GigRFayTplLP~M~~~------~~ls~~~ag~lasaNy~GYL~GAl~~ 47 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQAD------GGLSLSQAGWLASANYLGYLVGALLA 47 (85)
T ss_pred hhHHHHHHhHhHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888866655 79999999999999999999887665
No 295
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=60.75 E-value=40 Score=26.06 Aligned_cols=38 Identities=18% Similarity=0.052 Sum_probs=28.4
Q ss_pred hcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHH
Q 018727 148 LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185 (351)
Q Consensus 148 ~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 185 (351)
|.|.....+.+++-.+++++-|..+|+-.+--+++-+.
T Consensus 108 g~gllGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 108 GLGLLGISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred HHHHHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 34445556777888888888899999988877776554
No 296
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=57.69 E-value=1.2e+02 Score=25.82 Aligned_cols=22 Identities=5% Similarity=-0.144 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhcccccc
Q 018727 219 CLCISLFAFGVTIAAFWLPETL 240 (351)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~e~~ 240 (351)
.++..++.++....+.+++.+.
T Consensus 118 n~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 118 NYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHHHheeeecCCC
Confidence 3444445555555555554433
No 297
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=56.48 E-value=22 Score=32.30 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=37.2
Q ss_pred chhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 152 LGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 152 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
+....+..+.+.++..-|+.|.+.+...++|+-.-..+...+.+
T Consensus 387 fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 387 FVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred HHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 44458889999999999999999999999998877777777776
No 298
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=52.13 E-value=60 Score=26.02 Aligned_cols=23 Identities=17% Similarity=0.556 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcC
Q 018727 89 SSFMFGRALTSVFWGLVADRYGR 111 (351)
Q Consensus 89 ~~~~~~~~~~~~~~g~l~dr~Gr 111 (351)
.-|.+++.+.+.+.|++.||..+
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhc
Confidence 45667888899999999999885
No 299
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=50.98 E-value=2.1e+02 Score=26.52 Aligned_cols=32 Identities=6% Similarity=-0.053 Sum_probs=17.4
Q ss_pred CCCCcccccc---cccCccchhHHHHHHHHHHHHH
Q 018727 199 KYPNLFSSES---LFGKFPYFLPCLCISLFAFGVT 230 (351)
Q Consensus 199 ~~~~~~gw~~---~~~~~~~~~~~~~~~~~~~~~~ 230 (351)
+|-+-.||+. .|-+-.|+..+...+.+.++..
T Consensus 222 ~WfsPlgW~~~~~pyv~e~Wl~~llt~~~aa~l~g 256 (536)
T COG3559 222 SWFSPLGWSLQVRPYVGERWLVLLLTLATAAVLTG 256 (536)
T ss_pred ccccCccceEEeeecccchHHHHHHHHHHHHHHHH
Confidence 5555677764 3434456666655554444433
No 300
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=48.37 E-value=1.8e+02 Score=25.20 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=33.6
Q ss_pred HHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727 138 AVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (351)
Q Consensus 138 l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 193 (351)
.-..|.+.|+-.-.+.|-+++++-.||++++-...--.....++..++-|+++-.+
T Consensus 22 ~~~lr~~~g~~~vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l 77 (287)
T PF07760_consen 22 IPPLRVILGFPFVLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLL 77 (287)
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777776556677788888899966544333333334444445555555444
No 301
>COG4769 Predicted membrane protein [Function unknown]
Probab=46.07 E-value=29 Score=27.02 Aligned_cols=52 Identities=17% Similarity=0.329 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhh
Q 018727 90 SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS 147 (351)
Q Consensus 90 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 147 (351)
++.++..+.+...-++..++|+|.+-.++.. ..-++.+|..++++.+++.+-
T Consensus 81 l~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS------~mGaF~hNl~QLivas~Lv~~ 132 (181)
T COG4769 81 LYSFAGAILSTLFMYFLYQFGPKYLSLLGIS------VMGAFTHNLGQLIVASFLVFT 132 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEeeeehh------hHHHHHHhHHHHHHHHHHHhc
Confidence 3445556677777788889998876444332 234677888888888887653
No 302
>PF10810 DUF2545: Protein of unknown function (DUF2545) ; InterPro: IPR024470 This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. Their sequences are highly conserved.
Probab=45.30 E-value=78 Score=20.58 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=29.6
Q ss_pred HhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcccccccc
Q 018727 298 DMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPFKIDYR 348 (351)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~r 348 (351)
..+..++++.|++. -+....|+++.+.-.++.+.++..+.++|
T Consensus 38 L~alIy~ft~wlt~--------g~e~vtglflflapacgliirfmvg~g~r 80 (80)
T PF10810_consen 38 LAALIYYFTMWLTG--------GNEIVTGLFLFLAPACGLIIRFMVGYGRR 80 (80)
T ss_pred HHHHHHHhhhhccC--------ccHHHHHHHHHHhccccceeeeeeccCCC
Confidence 34455566666543 35667888888888888888877777766
No 303
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=44.07 E-value=64 Score=23.11 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL 131 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 131 (351)
.|-+-+++.-.+.+.++++++..|+.-+.+-=.++..++.++..+..+
T Consensus 56 fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 56 FGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred chhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 677778888888999999999999998877777777777666654433
No 304
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=42.44 E-value=1.1e+02 Score=27.88 Aligned_cols=28 Identities=18% Similarity=0.005 Sum_probs=20.7
Q ss_pred HHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727 93 FGRALTSVFWGLVADRYGRKPVIIMGTA 120 (351)
Q Consensus 93 ~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 120 (351)
....+..++.|-..|+..|+|++...+.
T Consensus 74 gs~lvlg~ivGq~vDg~sr~Kvi~~~L~ 101 (503)
T KOG2601|consen 74 GSQLVLGPIVGQWVDGMSRVKVIQTWLL 101 (503)
T ss_pred hHHHhhHHHHHHHhcchhHHHHHHHHHh
Confidence 3445666777888899999998876654
No 305
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=41.71 E-value=1.7e+02 Score=26.99 Aligned_cols=58 Identities=10% Similarity=0.112 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 018727 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR 108 (351)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 108 (351)
+.+.+.+-..+..+......|.+ +.... +++++ ...+.+...+...++.++-+....+
T Consensus 6 ~~~~lglQh~l~~~~~~i~~p~i--v~~~~-l~~~~------~~~li~at~~~sgi~Tllq~~~~~~ 63 (415)
T TIGR00801 6 QTLVLGLQHLLAMFGGTVLVPLL--VGLAP-LSAEQ------TQYLVSISLLTSGIGTLLQLFRTGG 63 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--Hhccc-CCHHH------HHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 33444444444444433333332 23334 66666 7778888888888888888776554
No 306
>PRK02237 hypothetical protein; Provisional
Probab=39.82 E-value=96 Score=22.32 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF 129 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 129 (351)
.|-+-+++.-.+.+.++.+++..|+.-+-+-=.++..++.++..+.
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 5667788888889999999999999887776666766666665444
No 307
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=39.49 E-value=1.1e+02 Score=29.71 Aligned_cols=63 Identities=10% Similarity=0.048 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727 134 NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (351)
Q Consensus 134 ~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 196 (351)
+..+++-=.++.|++.....+. .-+.-+-+|++.|..+.+++....++|..+...+...+...
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~ 520 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFS 520 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555668889988776664 66777789999999999999999999999999998777653
No 308
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=39.42 E-value=2.6e+02 Score=24.43 Aligned_cols=61 Identities=10% Similarity=0.054 Sum_probs=29.8
Q ss_pred ccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh---hcChHHHHHHHHHHHHHHH
Q 018727 55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR---YGRKPVIIMGTASVVIFNT 127 (351)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~Grr~~~~~~~~~~~~~~~ 127 (351)
+..+.....+..+.+..++.... .++..+.... .++..-.++ ||.||.=+++.+..++..+
T Consensus 39 ~i~g~~s~SlaLLADa~Hml~D~------~al~lal~A~------~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li 102 (296)
T COG1230 39 IIGGLLTGSLALLADALHMLSDA------LALLLALIAI------KLARRPATKRFTFGYKRLEILAAFLNALLLI 102 (296)
T ss_pred HHHHHHhccHHHHHhHHHHHHHH------HHHHHHHHHH------HHhcCCCCCCCCccHhHHHHHHHHHHHHHHH
Confidence 33444444555666666665554 4444443322 222222222 6777765555554444443
No 309
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=39.00 E-value=1.4e+02 Score=22.99 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=19.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhcChH
Q 018727 90 SFMFGRALTSVFWGLVADRYGRKP 113 (351)
Q Consensus 90 ~~~~~~~~~~~~~g~l~dr~Grr~ 113 (351)
-|.++..+.+.+.|++.+|..+++
T Consensus 61 Gyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 61 GYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred hHHHHHHHHHHHHHHHHHhccccc
Confidence 466777888889999999988764
No 310
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=38.01 E-value=3e+02 Score=24.76 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=54.9
Q ss_pred HHHHhhhhhhhhhhhhc--ChHHHHHHHHHHHHHHHHhhh--hhhH-------------H---HHHHH--H-HHhhhhcc
Q 018727 94 GRALTSVFWGLVADRYG--RKPVIIMGTASVVIFNTLFGL--SVNF-------------W---MAVLT--R-FLLGSLNG 150 (351)
Q Consensus 94 ~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~--~~~~-------------~---~l~~~--r-~l~G~~~g 150 (351)
..+...+++-++.|..| ++.....+..+..++.++... ..|+ . ..+.. | .+.|+.++
T Consensus 175 vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~~qs 254 (354)
T PF05631_consen 175 VAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGLIQS 254 (354)
T ss_pred HHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCchhHHHHHHHH
Confidence 33445555556666665 566677776666666554432 1111 0 11111 2 24566566
Q ss_pred cchhH-HHHHhhhccc---cchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 151 LLGPI-KAYACEIFRE---EHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 151 ~~~~~-~~~~~~~~~~---~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
.+... +..+-.|.|. +.+..-.|+......+..++|..+...+..
T Consensus 255 lFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s 303 (354)
T PF05631_consen 255 LFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLS 303 (354)
T ss_pred HHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 66553 7777777764 234455666666666666666666544443
No 311
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=37.20 E-value=93 Score=27.90 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=13.6
Q ss_pred HHHHhhhccc-cchh-hhHhHHHHHHHhHHHHHH
Q 018727 156 KAYACEIFRE-EHQA-LGLSTVSTAWGIGLIIGP 187 (351)
Q Consensus 156 ~~~~~~~~~~-~~r~-~~~~~~~~~~~~g~~~~~ 187 (351)
...+.|...+ +.|. +-++....+.++|....|
T Consensus 109 lPVI~eVA~~~~IRPeRPls~svvASq~aItaSP 142 (364)
T PF03605_consen 109 LPVIAEVAKENGIRPERPLSISVVASQIAITASP 142 (364)
T ss_pred hHHHHHHHHHcCCCCCCchHHHHHHHhcchhcCc
Confidence 4455666532 1121 234444444455444444
No 312
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=34.55 E-value=1.5e+02 Score=20.32 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=27.3
Q ss_pred HHhhhhhhhhhhhhcC-------hHHHHHHHHHHHHHHHHhhhhhh
Q 018727 96 ALTSVFWGLVADRYGR-------KPVIIMGTASVVIFNTLFGLSVN 134 (351)
Q Consensus 96 ~~~~~~~g~l~dr~Gr-------r~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
....+.++++.+|..+ ++.+.++.++...+..++++.++
T Consensus 32 ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS 77 (86)
T PF10785_consen 32 TAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRS 77 (86)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777654 67777777777777777776554
No 313
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=33.65 E-value=1.8e+02 Score=26.06 Aligned_cols=79 Identities=9% Similarity=0.109 Sum_probs=50.7
Q ss_pred HhhccccchhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhh
Q 018727 52 CTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG 130 (351)
Q Consensus 52 ~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 130 (351)
+...+.+..-+.++.+ .++++-+. +...+....+.-...++|..++..+.+++.|++|....+.++.+...++.+.+.
T Consensus 42 lia~G~G~~K~ni~~~~~dq~~~~~-~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 42 LIAVGTGGIKPNISPFGADQYDEDD-DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHCCHHHHHHHHHHCSSTTT-TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccccHHHHHHHHhcccc-hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 3445555566666444 44454331 222233345666677788888888999999999999888888877777776654
Q ss_pred h
Q 018727 131 L 131 (351)
Q Consensus 131 ~ 131 (351)
.
T Consensus 121 ~ 121 (372)
T PF00854_consen 121 S 121 (372)
T ss_dssp C
T ss_pred h
Confidence 4
No 314
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=31.27 E-value=2.8e+02 Score=22.28 Aligned_cols=41 Identities=7% Similarity=0.146 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhh
Q 018727 90 SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG 130 (351)
Q Consensus 90 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 130 (351)
...+...++.++.-.+..|.++|.++.+..++.++...+.+
T Consensus 36 ~~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G 76 (186)
T PF09605_consen 36 MPAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLMG 76 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 34455566777777888999999988877776666554443
No 315
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=30.53 E-value=4.5e+02 Score=24.48 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=10.2
Q ss_pred ChHHHHHHHHHHHHHHHHhhh
Q 018727 111 RKPVIIMGTASVVIFNTLFGL 131 (351)
Q Consensus 111 rr~~~~~~~~~~~~~~~~~~~ 131 (351)
+|+.+.++.++.++-.+++.+
T Consensus 377 ~k~~~~~~~~L~~LY~~Ly~l 397 (430)
T PF06123_consen 377 WKRGLIFAGLLAALYGFLYVL 397 (430)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444443
No 316
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=29.47 E-value=2.1e+02 Score=20.35 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=11.9
Q ss_pred Hhhhhhhhhhh-hhcChHHHHHHHHHH
Q 018727 97 LTSVFWGLVAD-RYGRKPVIIMGTASV 122 (351)
Q Consensus 97 ~~~~~~g~l~d-r~Grr~~~~~~~~~~ 122 (351)
+...+.|...| ++|-++.+.+..++.
T Consensus 57 l~G~~lG~WLD~~~~t~~~~tl~~lll 83 (100)
T TIGR02230 57 LLGVAVGIWLDRHYPSPFSWTLTMLIV 83 (100)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 33444444445 466555444433333
No 317
>PRK11469 hypothetical protein; Provisional
Probab=29.18 E-value=3.1e+02 Score=22.12 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=21.0
Q ss_pred HhhhhhhhhhhhhcChHHHHHHHHHHHHHHH
Q 018727 97 LTSVFWGLVADRYGRKPVIIMGTASVVIFNT 127 (351)
Q Consensus 97 ~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 127 (351)
.+..++..+.+++|+|.-++-+.++..++.-
T Consensus 150 ~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~ 180 (188)
T PRK11469 150 LGMMVGRFIGSIIGKKAEILGGLVLIGIGVQ 180 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666778888777777777777654
No 318
>PLN02878 homogentisate phytyltransferase
Probab=27.59 E-value=3.1e+02 Score=23.78 Aligned_cols=74 Identities=15% Similarity=0.053 Sum_probs=34.8
Q ss_pred hhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHh
Q 018727 108 RYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGI 181 (351)
Q Consensus 108 r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 181 (351)
|+|+|++..++..+..++........-.........+...|........-.-+...+.+.+....+.++..+-+
T Consensus 195 ~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs~~vD~~sk~~i~~fY~fiwkl 268 (280)
T PLN02878 195 RLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIWKL 268 (280)
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhcCcccHHHHHHHHHHHHHH
Confidence 57888888777666655554222211111112223333333333222222233344445566666666665543
No 319
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=27.45 E-value=1.4e+02 Score=19.18 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=13.0
Q ss_pred hhcccchhHHHHHhhhccccch
Q 018727 147 SLNGLLGPIKAYACEIFREEHQ 168 (351)
Q Consensus 147 ~~~g~~~~~~~~~~~~~~~~~r 168 (351)
+..+.......+++|..+++++
T Consensus 40 i~i~I~l~l~G~isE~i~~~Kg 61 (63)
T PF06341_consen 40 ISIGITLFLAGLISEFISKQKG 61 (63)
T ss_pred HHHHHHHHHHHHHHHHHhhccC
Confidence 3444444457778888776443
No 320
>PRK11715 inner membrane protein; Provisional
Probab=27.26 E-value=5.2e+02 Score=24.14 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=15.8
Q ss_pred cChHHHHHHHHHHHHHHHHhhh--hhhHHHHH
Q 018727 110 GRKPVIIMGTASVVIFNTLFGL--SVNFWMAV 139 (351)
Q Consensus 110 Grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~ 139 (351)
++|+.+.++..+.++-.+++.+ ..++..++
T Consensus 382 ~~k~g~~~~~~L~~LYg~Ly~lLq~EDyALL~ 413 (436)
T PRK11715 382 SWKRGLLFAAALAALYGVLYGLLQSEDYALLL 413 (436)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455666666665555555544 34454443
No 321
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=26.72 E-value=5.1e+02 Score=23.89 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=16.6
Q ss_pred hhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727 161 EIFREEHQALGLSTVSTAWGIGLIIGPALG 190 (351)
Q Consensus 161 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 190 (351)
|...-++---+..+...++..|.++.++..
T Consensus 315 ~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~ 344 (404)
T TIGR03644 315 DKLKIDDPVGAISVHGVAGIWGTLVVPITN 344 (404)
T ss_pred HhCCCCCCcCchHhhhHHHHHHHHHHHHhc
Confidence 445445544566666666566666555543
No 322
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=26.44 E-value=3e+02 Score=21.11 Aligned_cols=31 Identities=6% Similarity=-0.098 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
..+.++.-.++-++..+++|+.+.-..+.+.
T Consensus 78 A~LvYi~PL~~l~v~~~La~~L~~~e~~~~~ 108 (150)
T COG3086 78 ALLVYIFPLVGLFLGAILAQYLFFSELIVIF 108 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3445666677888888889998887665543
No 323
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=26.28 E-value=1.4e+02 Score=19.84 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=22.3
Q ss_pred hhhhhcChHHHHHHHHHHHHHHHHhhhhhhH
Q 018727 105 VADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135 (351)
Q Consensus 105 l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
--|+-.|++.+.+.+.+-..++++.......
T Consensus 10 ~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~~~ 40 (73)
T PF11298_consen 10 SQDQRRRRRRYLIMMGIRIPCFVLAAVVYRL 40 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466778888888888888777777665543
No 324
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.06 E-value=1.7e+02 Score=18.24 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=14.1
Q ss_pred CccchhHHHHHHHHHHHHHHHHhcccc
Q 018727 212 KFPYFLPCLCISLFAFGVTIAAFWLPE 238 (351)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~e 238 (351)
.+++.....+..+.+++...+.-.+|+
T Consensus 28 ~~n~~~~~Ii~vi~~i~~~~~~~~i~~ 54 (57)
T PF11151_consen 28 TYNFTTAAIIAVIFGIIVANIIAVIPK 54 (57)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344555555655555555544444444
No 325
>COG2119 Predicted membrane protein [Function unknown]
Probab=25.41 E-value=3.6e+02 Score=21.70 Aligned_cols=37 Identities=14% Similarity=0.308 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHH
Q 018727 90 SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 126 (351)
Q Consensus 90 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 126 (351)
...++..++...+.++++|+..|++-.++.++..+..
T Consensus 142 g~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 142 GMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 3445667788888999999999998877766655444
No 326
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.
Probab=25.00 E-value=4.6e+02 Score=24.17 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=27.5
Q ss_pred cchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccc--cCccchhH
Q 018727 166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF--GKFPYFLP 218 (351)
Q Consensus 166 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~--~~~~~~~~ 218 (351)
+-+...+|+...=.++|+.+.+..+..+.--.. .++|+..| .++||...
T Consensus 178 ~lkYaTLGvLFvNISIGGtLT~fAAPPVLMVA~----~w~Wd~~fM~~~FGWKAa 228 (438)
T PF07399_consen 178 RLKYATLGVLFVNISIGGTLTSFAAPPVLMVAS----TWGWDSAFMLTHFGWKAA 228 (438)
T ss_pred HHHHHHHHHHheEeeecccccccccCcceeEec----ccCCChHHHHHHcCHHHH
Confidence 334445566655667788887777665553222 45555433 34566643
No 327
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=24.88 E-value=5.2e+02 Score=24.26 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=5.1
Q ss_pred hhhhhhhcChH
Q 018727 103 GLVADRYGRKP 113 (351)
Q Consensus 103 g~l~dr~Grr~ 113 (351)
-++..|.|++.
T Consensus 109 ~~~l~~~g~~~ 119 (471)
T PF00939_consen 109 LWLLKRFGGSP 119 (471)
T ss_pred HHHHHHhCCch
Confidence 34444455554
No 328
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=24.43 E-value=2.1e+02 Score=26.53 Aligned_cols=12 Identities=8% Similarity=-0.247 Sum_probs=7.3
Q ss_pred hhhhhhhhhhhh
Q 018727 98 TSVFWGLVADRY 109 (351)
Q Consensus 98 ~~~~~g~l~dr~ 109 (351)
.+++.-++.||+
T Consensus 73 ~sp~v~r~l~~l 84 (438)
T TIGR00366 73 YSPIVYKLLKTI 84 (438)
T ss_pred cCHHHHHHHHHH
Confidence 445666666665
No 329
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=24.37 E-value=3.1e+02 Score=27.18 Aligned_cols=59 Identities=10% Similarity=0.041 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727 135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (351)
Q Consensus 135 ~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 193 (351)
.++.+.-.++.+.+.....+. .-+..+-.|++.|....+++....++|.++...+...=
T Consensus 565 ~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~ 624 (654)
T TIGR00926 565 ILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFE 624 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455666666555543 44556678999999999999999999998887776433
No 330
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=24.19 E-value=5.2e+02 Score=26.16 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhh
Q 018727 112 KPVIIMGTASVVIFNTLFGLSV 133 (351)
Q Consensus 112 r~~~~~~~~~~~~~~~~~~~~~ 133 (351)
-+++.+|.++..++..+.+++.
T Consensus 496 PwVi~IGsFlST~GAgLQsLtg 517 (1075)
T KOG2082|consen 496 PWVIVIGSFLSTCGAGLQSLTG 517 (1075)
T ss_pred ceeeehhHHHHHhHHHHhhhcC
Confidence 4577888888888887777643
No 331
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=23.89 E-value=6.4e+02 Score=24.01 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=27.1
Q ss_pred HHHHhhhccc-cchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 156 KAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 156 ~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
-..+.+.+|. +++...+|-++...++-..+-.++++.+.+
T Consensus 304 K~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir 344 (491)
T PF03219_consen 304 KSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIR 344 (491)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677764 456777777766666666666677888887
No 332
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=23.48 E-value=3.4e+02 Score=20.95 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018727 89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLL 145 (351)
Q Consensus 89 ~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 145 (351)
-.+.++..+.+...-.+.-|..||+.=.++.. ++.+.+||..++.++.++.
T Consensus 68 f~~Sl~Ggl~S~~vM~ll~~~~~~~~S~~giS------i~Gai~HN~gQl~va~~i~ 118 (148)
T PF07456_consen 68 FLFSLAGGLLSLLVMALLKKLFKKKFSLIGIS------IAGAIAHNIGQLIVASLII 118 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 45566677778888888888877665444332 2345677888877777653
No 333
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=22.93 E-value=2.4e+02 Score=26.38 Aligned_cols=14 Identities=21% Similarity=0.038 Sum_probs=9.4
Q ss_pred Hhhhhhhhhhhhhc
Q 018727 97 LTSVFWGLVADRYG 110 (351)
Q Consensus 97 ~~~~~~g~l~dr~G 110 (351)
..+++..++.||+-
T Consensus 75 A~sp~v~r~l~~lA 88 (453)
T PF02667_consen 75 ASSPPVKRLLDRLA 88 (453)
T ss_pred hCChHHHHHHHHHH
Confidence 34567777778764
No 334
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=22.79 E-value=2.7e+02 Score=19.26 Aligned_cols=8 Identities=25% Similarity=0.596 Sum_probs=4.2
Q ss_pred cccccccC
Q 018727 236 LPETLHRH 243 (351)
Q Consensus 236 ~~e~~~~~ 243 (351)
+||++.++
T Consensus 1 MPkSk~rK 8 (87)
T PF06781_consen 1 MPKSKVRK 8 (87)
T ss_pred CCCccccc
Confidence 46665443
No 335
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=22.69 E-value=1.4e+02 Score=27.25 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHhhhhcccchhH--
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL------SVNFWMAVLTRFLLGSLNGLLGPI-- 155 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~g~~~~~-- 155 (351)
...+.+...+...++.++-+. +.|.|-.+.-+.....+....... ..++.....+-++.|+..-.....
T Consensus 35 ~~~li~at~l~sgi~Tllq~~---~~g~~lpl~~G~s~~~~~~~~~~~g~~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~ 111 (389)
T PF00860_consen 35 TAALISATFLVSGIATLLQGL---PAGHRLPLVPGPSFAFIFAFMIVIGMAESGGYGLQAALGAVLISGILFILLGLTGL 111 (389)
T ss_dssp ----HHHHHHHHHHHHHHHHH---HTTT-----EEE-GGGHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred hhHHHHHHHHHHHHHHHHHHh---cCCCceecccccchhhhhhhhcccccccchhhchhhhhhHHHHHHHHHHHHHHhch
Confidence 445566667777888888777 678777776554444443222221 233444444445555543333332
Q ss_pred HHHHhhhccccchhhhHh
Q 018727 156 KAYACEIFREEHQALGLS 173 (351)
Q Consensus 156 ~~~~~~~~~~~~r~~~~~ 173 (351)
...+.+.+|+..++....
T Consensus 112 ~~~l~~~~pp~v~g~v~~ 129 (389)
T PF00860_consen 112 RKRLRRLFPPVVKGAVVL 129 (389)
T ss_dssp H-HHHHH--HHHHHHHHH
T ss_pred HHHHHHHhChhheEeeEe
Confidence 236677888777664433
No 336
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=22.47 E-value=1.3e+02 Score=16.35 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhhhhhhhhh
Q 018727 89 SSFMFGRALTSVFWGLVADR 108 (351)
Q Consensus 89 ~~~~~~~~~~~~~~g~l~dr 108 (351)
++..++..+.+++.+|+-+|
T Consensus 15 AAP~iagIi~s~iv~w~~~R 34 (35)
T PF13940_consen 15 AAPIIAGIIASLIVGWLRNR 34 (35)
T ss_pred HhHHHHHHHHHHHHHHHHhc
Confidence 45566667777777776554
No 337
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=21.83 E-value=3.6e+02 Score=22.93 Aligned_cols=21 Identities=48% Similarity=0.602 Sum_probs=9.7
Q ss_pred HHHHHHHhHHHHHHHhhhhhcC
Q 018727 174 TVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 174 ~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
....+..+|..+| ++.|.+.|
T Consensus 41 ~l~~~~~~G~~~G-~~~G~l~d 61 (250)
T PF06813_consen 41 TLSTAGDIGSYFG-ILAGLLYD 61 (250)
T ss_pred HHHHHHHHHhhcc-HHHHHHHH
Confidence 3344444554443 34445555
No 338
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=21.10 E-value=4.4e+02 Score=21.18 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh
Q 018727 90 SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF 129 (351)
Q Consensus 90 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 129 (351)
...+...++.++.=.+..|.+|+.++.+..++.++.....
T Consensus 38 ~p~i~al~~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~ 77 (189)
T TIGR02185 38 SPGITAFLVGIIFFLMVAKVPKRGVIFIFGILLGLLFFLM 77 (189)
T ss_pred HHHHHHHHHhHHHhhhhhhcCCccHHHHHHHHHHHHHHHH
Confidence 3445556777777788899999988887777666654433
No 339
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=20.57 E-value=3.6e+02 Score=20.52 Aligned_cols=29 Identities=24% Similarity=-0.017 Sum_probs=20.9
Q ss_pred HHhhhccccchhhhHhHHHHHHHhHHHHH
Q 018727 158 YACEIFREEHQALGLSTVSTAWGIGLIIG 186 (351)
Q Consensus 158 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 186 (351)
-+.|++|+..|....+.++.......-+.
T Consensus 59 aLkdi~P~~~R~~i~~~~~~~~~~~k~~~ 87 (137)
T PF04281_consen 59 ALKDIFPPSVRNWISSTVSTTSSAVKSLF 87 (137)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999988887766555444433
No 340
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.46 E-value=1.6e+02 Score=21.26 Aligned_cols=34 Identities=21% Similarity=0.055 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH
Q 018727 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI 155 (351)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 155 (351)
..++.++=-++++-++.++...+.|++.|...+.
T Consensus 60 a~iG~llD~~agTsPwglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 60 AGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666667778889998887764
No 341
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=20.07 E-value=35 Score=29.95 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHH
Q 018727 143 FLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA 188 (351)
Q Consensus 143 ~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 188 (351)
++.|++.+..... .++.+ .+|++. +..+..+.++++++..+
T Consensus 5 ~~~~~~~~~~q~s~~glas-~~p~~y----~~a~~~Gq~~aGv~~s~ 46 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLAS-LFPPKY----TQAVMIGQGLAGVIVSL 46 (309)
T ss_dssp -----------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHh-cCCHHH----HHHHHhhccHHHHHHHH
Confidence 3455566665554 55555 467654 33334444444444433
Done!