Query 018727
Match_columns 351
No_of_seqs 333 out of 2093
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 05:07:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 1E-28 3.5E-33 226.4 21.7 274 39-343 24-315 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 7.1E-29 2.4E-33 228.2 14.7 275 40-343 27-308 (451)
3 2gfp_A EMRD, multidrug resista 99.9 2.9E-27 1E-31 212.4 12.6 256 44-348 3-261 (375)
4 4gc0_A D-xylose-proton symport 99.9 1.1E-25 3.6E-30 209.4 19.4 193 47-247 18-231 (491)
5 4aps_A DI-OR tripeptide H+ sym 99.9 4.1E-23 1.4E-27 192.0 18.3 171 41-233 13-193 (491)
6 2xut_A Proton/peptide symporte 99.8 1.3E-19 4.5E-24 169.7 14.6 170 44-235 15-197 (524)
7 2cfq_A Lactose permease; trans 99.8 4.2E-20 1.4E-24 168.2 7.9 272 40-349 6-290 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.6 4.2E-15 1.4E-19 136.2 14.8 175 40-236 251-433 (451)
9 2cfq_A Lactose permease; trans 99.5 1.1E-13 3.7E-18 125.8 13.9 142 84-241 261-405 (417)
10 3o7q_A L-fucose-proton symport 99.5 1.1E-13 3.7E-18 126.3 13.8 145 42-195 259-406 (438)
11 4gc0_A D-xylose-proton symport 99.4 1.9E-12 6.5E-17 119.9 15.7 184 45-244 281-471 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.4 2.4E-12 8.1E-17 119.3 13.2 144 46-195 288-447 (491)
13 2gfp_A EMRD, multidrug resista 99.1 9E-12 3.1E-16 111.2 0.6 146 41-195 199-351 (375)
14 2xut_A Proton/peptide symporte 98.9 6.1E-09 2.1E-13 97.1 10.8 112 84-195 337-466 (524)
15 2g9p_A Antimicrobial peptide l 56.5 6.6 0.00023 18.3 1.5 14 101-114 2-15 (26)
16 4dve_A Biotin transporter BIOY 21.2 2E+02 0.0069 22.3 5.7 24 89-112 100-123 (198)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.96 E-value=1e-28 Score=226.36 Aligned_cols=274 Identities=15% Similarity=0.137 Sum_probs=210.3
Q ss_pred chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
.++.+..++...+..++..+...+.+|.+.+++|.+..+ .+++.+++.++..++.+++|+++||+|||++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~ 97 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG 97 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Confidence 445566677777888888889999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh---hhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727 119 TASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (351)
Q Consensus 119 ~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (351)
.++.+++.+++ +.+++++.+++.|++.|++.+...+. .++++|++|+++|++++++.+.+..+|.+++|.+++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 78899999999999999998887764 999999999999999999999999999999999999988
Q ss_pred -CCCCCCC----------CcccccccccCccchhHHHHHHHHHHHHHHHHhc--cccccccCCCCCccchhhHHHhhhhh
Q 018727 195 -QPAEKYP----------NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESAS 261 (351)
Q Consensus 195 -~~~~~~~----------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~ 261 (351)
+..+..+ ...+|+... ..+|+.++.+.++..++..+..++ .||++++..++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------------- 243 (438)
T 3o7q_A 178 LSNVPHQSQDVLDKMSPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK------------- 243 (438)
T ss_dssp HTSSCCCCHHHHHHSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS-------------
T ss_pred hcccccccccccccCCcchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc-------------
Confidence 4111000 000000000 011666666655555444433333 3443322111110
Q ss_pred hhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHH-hcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727 262 AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW-ANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI 340 (351)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~ 340 (351)
+......+++++|+|.++..++..++..........+.+.| +++. +|+++.+++.+.+...++.++++
T Consensus 244 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~ 312 (438)
T 3o7q_A 244 ------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIGR 312 (438)
T ss_dssp ------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCcchhHHHHHHHHHHHHHHHHH
Confidence 01112245677889999999998888888888888999999 7775 69999999999998888877766
Q ss_pred ccc
Q 018727 341 LPF 343 (351)
Q Consensus 341 ~~~ 343 (351)
+..
T Consensus 313 ~~~ 315 (438)
T 3o7q_A 313 FTG 315 (438)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=7.1e-29 Score=228.21 Aligned_cols=275 Identities=12% Similarity=0.044 Sum_probs=211.7
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
++.+..+++..+...+..+...+.+|.+.+++ .+..+ .+++.+++.++..++++++|+++||+|||+++.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH------HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence 34455677777888888888999999999999 99999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh----hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727 120 ASVVIFNTLFGL----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (351)
Q Consensus 120 ~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (351)
++.+++.+++++ +++++.++++|++.|++.+...+. .++++|++|+++|++++++.+.+..+|.+++|.+++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 899999999999999998877775 999999999999999999999999999999999999987
Q ss_pred CCCCCCCCccc-ccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhccc
Q 018727 195 QPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272 (351)
Q Consensus 195 ~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (351)
+ .+| ||+.| ++.++..++. ++..+++||++++....++++....++. +...+.++.....+
T Consensus 180 ~-------~~g~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 242 (451)
T 1pw4_A 180 A-------WFNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD-DYNEKAEQELTAKQ 242 (451)
T ss_dssp H-------HTCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------CCTH
T ss_pred H-------HhccHHHHH---------HHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccc-cchhhhhccccccc
Confidence 6 444 55544 5555555443 4455667887654322211111000000 00000000000011
Q ss_pred CcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727 273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF 343 (351)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~ 343 (351)
...++++++|.++..++..++..........++|.|+.+. +|+++.+++.+.+..+++.+++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~ 308 (451)
T 1pw4_A 243 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTLLC 308 (451)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1146678899999999988888888889999999998875 78999999999999888887765543
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.94 E-value=2.9e-27 Score=212.40 Aligned_cols=256 Identities=16% Similarity=0.253 Sum_probs=209.5
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHH
Q 018727 44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV 123 (351)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 123 (351)
+.++...++..+..+...+.+|.+.+++|.+..+ .+++.+.+.++..+++++.|+++||+|||+++.++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHH------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 3456667777788888899999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCC
Q 018727 124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202 (351)
Q Consensus 124 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 202 (351)
++.++.+++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------- 149 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT------- 149 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------
Confidence 99999999999999999999999998887775 9999999999999999999999999999999999999987
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHH-HHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccc
Q 018727 203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN 281 (351)
Q Consensus 203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (351)
..+|+.++.+.++..++..+ ..+.+||++++++++ ++....+++++|+
T Consensus 150 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~ 198 (375)
T 2gfp_A 150 ---------MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR----------------------TRLLTSYKTLFGN 198 (375)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC----------------------CCTTTCSTHHHHH
T ss_pred ---------hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc----------------------ccHHHHHHHHhcC
Confidence 45566666776666655544 455667765432211 0122356678889
Q ss_pred cchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-ccccc
Q 018727 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-KIDYR 348 (351)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-~~~~r 348 (351)
|.++...+..++.......+..+.|.|+.+. +|+++.+++.+.+...++.+++.+.. ++.||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r 261 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGAWFAGRPNKR 261 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-----HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888887777777777777665553 78899999999999888888766543 55554
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.94 E-value=1.1e-25 Score=209.41 Aligned_cols=193 Identities=15% Similarity=0.073 Sum_probs=159.3
Q ss_pred HHHHHHhhccccchhhhHHHHHHhhcccccc--cchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 47 WIIVLCTALPISSLFPFLYFMIKDFQIAKRE--EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
.+..++.+++...++..+|.+.++++.+... ...+.+.+++.+++.+|.++|++++|+++||+|||+++.++.++..+
T Consensus 18 ~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i 97 (491)
T 4gc0_A 18 TLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI 97 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3455677778888888999998887654332 12234478999999999999999999999999999999999999999
Q ss_pred HHHHhh------------------hhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHH
Q 018727 125 FNTLFG------------------LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII 185 (351)
Q Consensus 125 ~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 185 (351)
+.++++ ++++++.++++|+++|++.|...+. +.+++|+.|+++|++..++.+.+..+|.++
T Consensus 98 ~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~ 177 (491)
T 4gc0_A 98 SGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL 177 (491)
T ss_dssp HHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh
Confidence 998887 4789999999999999998887775 999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCC
Q 018727 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDD 247 (351)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 247 (351)
++.++..+.. ..++.... .+.|+.++....+..++.++..+++||+|++...+.
T Consensus 178 ~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~ 231 (491)
T 4gc0_A 178 VYCVNYFIAR-------SGDASWLN-TDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRG 231 (491)
T ss_dssp HHHHHHHHHT-------TSCTTTTT-TTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTT
T ss_pred hhhcchhhcc-------cccccccc-chhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcC
Confidence 9999887765 33333333 566788888888888888888889999998754433
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.90 E-value=4.1e-23 Score=191.97 Aligned_cols=171 Identities=16% Similarity=0.231 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHH-HHHh-----hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hcChH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYF-MIKD-----FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKP 113 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~ 113 (351)
+.++.++...++..+..+...+.++. +.++ +|.+..+ .+++.+++.++..++++++|+++|| +|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------AASIMAIYASMVYLSGTIGGFVADRIIGARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 34556666666666666666666654 4444 8999998 9999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccc--hhhhHhHHHHHHHhHHHHHHHhh
Q 018727 114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALG 190 (351)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~ 190 (351)
++.++.++.+++.++++++++++.+++.|++.|++.+...+. .++++|++|+++ |+.++++++.+.++|..++|.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887775 999999999988 77888889999999999999999
Q ss_pred hhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHH
Q 018727 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAA 233 (351)
Q Consensus 191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (351)
+.+.+ ..+|+.++.+.++..++..+..
T Consensus 167 ~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 167 GAAQE----------------AAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHH----------------HSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh----------------hhhHHHHHHHHHHHHHHHHHHH
Confidence 99987 4555666666655555444433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.81 E-value=1.3e-19 Score=169.71 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=140.1
Q ss_pred HHHHHHHHHhhccccchhhhHHH-HHHhhc------ccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-cChHHH
Q 018727 44 FSIWIIVLCTALPISSLFPFLYF-MIKDFQ------IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVI 115 (351)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~ 115 (351)
+.++...++..+..+...+.++. +.+++| .+..+ .+++.+++.++..++.+++|+++||+ |||+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 34555556666666666666654 566788 89988 99999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhH---HHHHHHhHHHHHHHhh
Q 018727 116 IMGTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST---VSTAWGIGLIIGPALG 190 (351)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~ 190 (351)
.++.++.+++.+++++++ +++.+++.|++.|++.+...+. .++++|++|+++|+++.+. .+.+.++|..++|.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 9999999999999998887775 9999999999999876666 8899999999999999
Q ss_pred hhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhc
Q 018727 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW 235 (351)
Q Consensus 191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (351)
+.+.+ ..+|+.++.+.++..++..+..++
T Consensus 169 ~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 169 PLLLK----------------NFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp THHHH----------------TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhc----------------cccHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 445666667666665555444433
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.80 E-value=4.2e-20 Score=168.22 Aligned_cols=272 Identities=11% Similarity=0.102 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 118 (351)
.+.++.+....++..+......+.+|.+. +++|.+..+ .+++.+...++..++++++|+++||+|||++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~ 79 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI 79 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTT------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 35555555555666666667778887655 458999999 99999999999999999999999999999999988
Q ss_pred HHHHHHHHH---HhhhhhhHH-HHHHHHHHhhhhcccchh-HHHHHhhhccc--cchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727 119 TASVVIFNT---LFGLSVNFW-MAVLTRFLLGSLNGLLGP-IKAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALGG 191 (351)
Q Consensus 119 ~~~~~~~~~---~~~~~~~~~-~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~ 191 (351)
..+..++.. ...+.+... .++..+.+.|++.+...+ ....+.++.++ ++|+..++.......+|..++|.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~ 159 (417)
T 2cfq_A 80 ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159 (417)
T ss_dssp HHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 776654321 112222111 233455555555444332 23333344332 45677788888888999999999999
Q ss_pred hhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcc
Q 018727 192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE 271 (351)
Q Consensus 192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (351)
.+.+ .+|+.++++.++..++..+..+..+|++++..+++++.+. +.+...
T Consensus 160 ~l~~-----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 209 (417)
T 2cfq_A 160 IMFT-----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA-------------NHSAFS 209 (417)
T ss_dssp HHHH-----------------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSS-------------CCCCCC
T ss_pred HHHH-----------------hchhHHHHHHHHHHHHHHHHHHHcCccccccccccccccc-------------cccccc
Confidence 8874 2344444554444333333334444332111100000000 000001
Q ss_pred cCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh-----cccccc
Q 018727 272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI-----LPFKID 346 (351)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-----~~~~~~ 346 (351)
...+++++++|.++...+..+........+.+++|.|+.+.... .+.+....+.+.+...++.+++. +..|++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g 287 (417)
T 2cfq_A 210 LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFAT--GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIG 287 (417)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11234577888887766665555555555656678777554211 12345556777666655544433 334666
Q ss_pred ccc
Q 018727 347 YRF 349 (351)
Q Consensus 347 ~r~ 349 (351)
+|+
T Consensus 288 ~~~ 290 (417)
T 2cfq_A 288 GKN 290 (417)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.62 E-value=4.2e-15 Score=136.20 Aligned_cols=175 Identities=13% Similarity=0.062 Sum_probs=138.9
Q ss_pred hHHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh--cChHHHH
Q 018727 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVII 116 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~ 116 (351)
.+.++.+.+..++..+.......+.|.+.++ +|.+..+ .+++.+...++..++.++.|+++||+ |||+.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 324 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 324 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence 3556666666666666777777888877766 7888888 99999999999999999999999999 9999988
Q ss_pred HHHHHHH-HHHHHhhhh--hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHh-HHHHHHHhhh
Q 018727 117 MGTASVV-IFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGG 191 (351)
Q Consensus 117 ~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~ 191 (351)
++..+.. ++.++..+. .+.+.+.+..++.|++.+...+ ...++.|.+|+++|++++++.+....+ |..++|.+.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g 404 (451)
T 1pw4_A 325 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404 (451)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876666 666666655 3677777778888887666655 488999999999999999999999999 9999999999
Q ss_pred hhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcc
Q 018727 192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL 236 (351)
Q Consensus 192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (351)
.+.+ ..+|...+.+.+++.++..+..+..
T Consensus 405 ~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 405 YTVD----------------FFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHH----------------SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----------------hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9988 4456666666666666655554444
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.52 E-value=1.1e-13 Score=125.82 Aligned_cols=142 Identities=18% Similarity=0.125 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI 162 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~ 162 (351)
.++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+ ...+++|.
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777888889999999999999999999988888888777777777777777777777776555444 47899999
Q ss_pred ccccchhhhHhH-HHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH-Hhcccccc
Q 018727 163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETL 240 (351)
Q Consensus 163 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~ 240 (351)
+|++.|+++.++ ++.+..+|+.++|.++|.+.+ ..++...+.+.++..++..+. .+..||++
T Consensus 341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH----------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH----------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999998 588889999999999999987 445555666666665555444 44455544
Q ss_pred c
Q 018727 241 H 241 (351)
Q Consensus 241 ~ 241 (351)
+
T Consensus 405 ~ 405 (417)
T 2cfq_A 405 P 405 (417)
T ss_dssp T
T ss_pred c
Confidence 3
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.52 E-value=1.1e-13 Score=126.33 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHH-HHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 42 ELFSIWIIVLCTALPISSLFPFLYFM-IKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
.++...+..++..........+.|.+ .++ +|.+..+ .+++.+...++..++.++.|+++||+|||+++..+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~ 332 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA 332 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34444455555555556666777766 655 4888888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
++..++.++..+.++.+.++.. ++.|++.+...+. ..+..|.+|++ |+.+.++.. ...+|..++|.+.|.+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 333 LIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 9988888888887776654444 7778877766664 88889999976 888888776 567999999999999998
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.44 E-value=1.9e-12 Score=119.91 Aligned_cols=184 Identities=12% Similarity=0.040 Sum_probs=120.2
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (351)
......+......+....+.+.+.+..+.+... .........+...++.++.+++.||+|||+.++.+.....+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI 354 (491)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc------hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence 334444444455556666667788777777666 66666677788889999999999999999999988887777
Q ss_pred HHHHhhhh-----hhHHHHHHHH-HHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727 125 FNTLFGLS-----VNFWMAVLTR-FLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (351)
Q Consensus 125 ~~~~~~~~-----~~~~~l~~~r-~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 198 (351)
+.+..+.. ++...+.... +..+++.+.....+.+.+|.+|++.|++++++......+|+.+++.+...+.+..
T Consensus 355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~- 433 (491)
T 4gc0_A 355 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS- 433 (491)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 66554432 1222222222 2223334333334889999999999999999999999999999988877665310
Q ss_pred CCCCcccccccccCccchhHHHHHHHHHHH-HHHHHhccccccccCC
Q 018727 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHN 244 (351)
Q Consensus 199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~ 244 (351)
+... ..++..++++.++++++ .++.++++||++.+..
T Consensus 434 ------~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 434 ------WLVA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp ------HHHH---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred ------HHHh---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 0000 11222334444444444 4456788999986543
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.39 E-value=2.4e-12 Score=119.33 Aligned_cols=144 Identities=10% Similarity=-0.029 Sum_probs=107.6
Q ss_pred HHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHH-----HHH
Q 018727 46 IWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-----MGT 119 (351)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~ 119 (351)
++...+............++.+.++ ++.+..+ .+++.+...++..++.++.|++.||+|||+... .+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~ 361 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP------VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGL 361 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSC------SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccCccC------HHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHH
Confidence 3333333344444455556655544 5666555 777788888888999999999999999986554 667
Q ss_pred HHHHHHHHHhhhhh---------hHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHh
Q 018727 120 ASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL 189 (351)
Q Consensus 120 ~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 189 (351)
++.+++.++..... +.+.+.+..++.|++.+...+ ...++.|.+|++.|++++++.+....+|..++|.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~ 441 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL 441 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766665532 566777778888998777666 48899999999999999999999999999999999
Q ss_pred hhhhcC
Q 018727 190 GGFLAQ 195 (351)
Q Consensus 190 ~~~l~~ 195 (351)
.+.+.+
T Consensus 442 ~~~~~~ 447 (491)
T 4aps_A 442 VTLYNA 447 (491)
T ss_dssp GGGGGG
T ss_pred HHHHhc
Confidence 988865
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.11 E-value=9e-12 Score=111.25 Aligned_cols=146 Identities=13% Similarity=0.075 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727 41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (351)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 119 (351)
+.++...+..++............|.+.++ +|.+..+ .+++.+...++..++.++.+++.||+|++. ..+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~ 270 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSV 270 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHH------HHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 445555555555555555555666655444 7888888 899999999999999999999999998832 2232
Q ss_pred HH-HHHHHHH--hhh--hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727 120 AS-VVIFNTL--FGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (351)
Q Consensus 120 ~~-~~~~~~~--~~~--~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 193 (351)
.+ ...+..+ ... .++.+.+++..++.|++.+...+. ..++.|.+| ++|+++.++.+....+|..++|.+.+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 271 ICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp HHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222221 112 236666777788888887776664 889999998 8999999999999999999999999988
Q ss_pred cC
Q 018727 194 AQ 195 (351)
Q Consensus 194 ~~ 195 (351)
.+
T Consensus 350 ~~ 351 (375)
T 2gfp_A 350 PQ 351 (375)
T ss_dssp HH
T ss_pred hc
Confidence 76
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.89 E-value=6.1e-09 Score=97.13 Aligned_cols=112 Identities=13% Similarity=0.025 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhh----hhhcC----hHHHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHhh
Q 018727 84 AGYVGSSFMFGRALTSVFWGLVA----DRYGR----KPVIIMGTASVVIFNTLFGLS---------VNFWMAVLTRFLLG 146 (351)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G 146 (351)
.+++.....++..++.++.+.+. ||.|+ ++.+.++.++.+++.++.+.. .+.+.+++..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 45555555555566666666654 55443 356667777777777766653 35667777888889
Q ss_pred hhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727 147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (351)
Q Consensus 147 ~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (351)
++.+...+. ..++.|.+|+++|++++|+.+....+|..++|.+.+.+.+
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 988777665 8899999999999999999999999999999999999876
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=56.47 E-value=6.6 Score=18.33 Aligned_cols=14 Identities=29% Similarity=0.888 Sum_probs=11.2
Q ss_pred hhhhhhhhhcChHH
Q 018727 101 FWGLVADRYGRKPV 114 (351)
Q Consensus 101 ~~g~l~dr~Grr~~ 114 (351)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788899999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=21.18 E-value=2e+02 Score=22.29 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcCh
Q 018727 89 SSFMFGRALTSVFWGLVADRYGRK 112 (351)
Q Consensus 89 ~~~~~~~~~~~~~~g~l~dr~Grr 112 (351)
.-|.++..+++.+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 356667777778888888886543
Done!