Query 018729
Match_columns 351
No_of_seqs 284 out of 2153
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:33:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4536 CorB Putative Mg2+ and 100.0 1.6E-67 3.5E-72 487.1 20.9 314 14-337 2-333 (423)
2 TIGR03520 GldE gliding motilit 100.0 4.5E-65 9.8E-70 498.6 34.1 302 22-335 2-318 (408)
3 PRK11573 hypothetical protein; 100.0 4.1E-65 8.9E-70 499.0 31.9 300 25-336 2-319 (413)
4 COG1253 TlyC Hemolysins and re 100.0 6.3E-61 1.4E-65 473.0 33.0 313 14-337 3-337 (429)
5 COG4535 CorC Putative Mg2+ and 100.0 5.2E-34 1.1E-38 249.3 8.1 179 151-338 19-199 (293)
6 KOG2118 Predicted membrane pro 100.0 3.9E-34 8.5E-39 284.2 5.3 327 8-338 6-338 (498)
7 PRK15094 magnesium/cobalt effl 100.0 9.1E-32 2E-36 252.5 14.9 172 156-336 24-197 (292)
8 PF01595 DUF21: Domain of unkn 100.0 1.4E-29 3E-34 222.3 21.6 168 18-193 3-183 (183)
9 TIGR00400 mgtE Mg2+ transporte 99.7 1.7E-17 3.7E-22 165.1 11.5 155 166-330 89-254 (449)
10 TIGR01302 IMP_dehydrog inosine 99.7 3.8E-17 8.3E-22 162.4 12.8 151 165-328 43-201 (450)
11 COG4109 Predicted transcriptio 99.7 1.9E-16 4E-21 146.6 8.2 139 194-336 171-314 (432)
12 COG3448 CBS-domain-containing 99.6 1.1E-14 2.5E-19 132.0 15.6 157 166-330 202-374 (382)
13 COG2524 Predicted transcriptio 99.6 1.5E-15 3.2E-20 135.4 6.0 128 197-329 163-292 (294)
14 PRK05567 inosine 5'-monophosph 99.6 1.6E-14 3.4E-19 145.1 13.0 150 165-328 50-205 (486)
15 cd04605 CBS_pair_MET2_assoc Th 99.5 1.2E-13 2.6E-18 109.9 8.9 107 217-325 3-109 (110)
16 cd04641 CBS_pair_28 The CBS do 99.5 2E-13 4.3E-18 110.8 9.4 107 217-325 2-119 (120)
17 cd04623 CBS_pair_10 The CBS do 99.5 1.7E-13 3.7E-18 109.2 8.8 106 217-325 2-112 (113)
18 cd04603 CBS_pair_KefB_assoc Th 99.5 2.8E-13 6.1E-18 108.5 9.8 107 217-325 2-110 (111)
19 cd04596 CBS_pair_DRTGG_assoc T 99.5 2.2E-13 4.8E-18 108.3 8.9 105 217-325 3-107 (108)
20 cd04626 CBS_pair_13 The CBS do 99.5 2E-13 4.2E-18 109.0 8.4 106 217-325 2-110 (111)
21 cd04630 CBS_pair_17 The CBS do 99.5 2.4E-13 5.1E-18 109.2 8.8 107 217-325 2-113 (114)
22 cd04600 CBS_pair_HPP_assoc Thi 99.5 3.2E-13 7E-18 109.8 9.2 107 217-325 3-123 (124)
23 cd04590 CBS_pair_CorC_HlyC_ass 99.4 4.7E-13 1E-17 106.6 9.2 109 216-326 1-111 (111)
24 cd04618 CBS_pair_5 The CBS dom 99.4 6.3E-13 1.4E-17 104.6 9.7 95 217-325 2-97 (98)
25 cd04631 CBS_pair_18 The CBS do 99.4 3E-13 6.6E-18 110.1 8.1 108 217-325 2-124 (125)
26 cd04593 CBS_pair_EriC_assoc_ba 99.4 5.5E-13 1.2E-17 107.2 8.9 107 218-326 3-115 (115)
27 cd04642 CBS_pair_29 The CBS do 99.4 6.8E-13 1.5E-17 108.7 9.0 107 217-325 2-125 (126)
28 cd04588 CBS_pair_CAP-ED_DUF294 99.4 7.1E-13 1.5E-17 105.4 8.9 106 217-325 2-109 (110)
29 cd04803 CBS_pair_15 The CBS do 99.4 6E-13 1.3E-17 107.8 8.6 107 217-325 2-121 (122)
30 cd04619 CBS_pair_6 The CBS dom 99.4 8.1E-13 1.7E-17 106.3 9.1 107 217-325 2-113 (114)
31 cd04639 CBS_pair_26 The CBS do 99.4 5.9E-13 1.3E-17 106.1 8.1 107 217-325 2-110 (111)
32 cd04624 CBS_pair_11 The CBS do 99.4 9.2E-13 2E-17 105.1 9.1 107 218-326 3-112 (112)
33 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 9.4E-13 2E-17 104.6 9.0 106 217-325 2-110 (111)
34 PRK11543 gutQ D-arabinose 5-ph 99.4 4.4E-13 9.5E-18 128.0 7.6 120 205-326 196-318 (321)
35 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 9.1E-13 2E-17 105.1 8.2 107 217-325 2-113 (114)
36 COG3620 Predicted transcriptio 99.4 5.8E-13 1.3E-17 110.7 7.0 137 185-329 39-185 (187)
37 PRK10892 D-arabinose 5-phospha 99.4 6.7E-13 1.5E-17 127.0 8.6 120 204-326 200-323 (326)
38 cd04643 CBS_pair_30 The CBS do 99.4 1.3E-12 2.8E-17 104.8 8.5 105 217-325 2-115 (116)
39 cd04801 CBS_pair_M50_like This 99.4 1.1E-12 2.4E-17 105.2 8.1 107 217-325 2-113 (114)
40 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 1.3E-12 2.8E-17 103.9 8.4 106 217-325 2-110 (111)
41 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 1.8E-12 4E-17 102.6 9.1 106 217-325 3-108 (109)
42 cd04615 CBS_pair_2 The CBS dom 99.4 1.7E-12 3.6E-17 103.7 8.7 105 219-325 4-112 (113)
43 cd04635 CBS_pair_22 The CBS do 99.4 1.5E-12 3.2E-17 105.5 8.4 107 217-325 2-121 (122)
44 cd04610 CBS_pair_ParBc_assoc T 99.4 2.3E-12 4.9E-17 101.8 9.2 104 217-325 3-106 (107)
45 cd04627 CBS_pair_14 The CBS do 99.4 1.7E-12 3.7E-17 105.7 8.5 106 217-323 2-120 (123)
46 cd04601 CBS_pair_IMPDH This cd 99.4 2.5E-12 5.5E-17 102.0 9.0 106 217-325 3-109 (110)
47 cd04636 CBS_pair_23 The CBS do 99.4 1.6E-12 3.4E-17 107.4 8.0 106 217-325 2-131 (132)
48 cd04607 CBS_pair_NTP_transfera 99.4 3E-12 6.4E-17 102.5 9.0 106 218-325 4-112 (113)
49 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 3.6E-12 7.8E-17 100.6 9.3 104 217-325 2-105 (106)
50 cd04585 CBS_pair_ACT_assoc2 Th 99.4 2.4E-12 5.1E-17 103.8 8.4 106 217-325 2-121 (122)
51 COG2239 MgtE Mg/Co/Ni transpor 99.4 6.3E-12 1.4E-16 123.7 12.8 155 188-348 114-282 (451)
52 cd04621 CBS_pair_8 The CBS dom 99.4 2.6E-12 5.7E-17 107.0 8.5 106 217-325 2-134 (135)
53 PRK01862 putative voltage-gate 99.4 1.2E-12 2.7E-17 134.4 7.8 123 203-329 444-572 (574)
54 cd04614 CBS_pair_1 The CBS dom 99.3 4.7E-12 1E-16 99.1 9.2 94 217-325 2-95 (96)
55 cd04629 CBS_pair_16 The CBS do 99.3 1.8E-12 3.8E-17 103.7 6.9 106 217-325 2-113 (114)
56 cd04800 CBS_pair_CAP-ED_DUF294 99.3 3.3E-12 7.1E-17 101.7 8.3 105 217-325 2-110 (111)
57 cd04599 CBS_pair_GGDEF_assoc2 99.3 4.4E-12 9.5E-17 99.8 8.9 103 217-325 2-104 (105)
58 cd04606 CBS_pair_Mg_transporte 99.3 3.3E-12 7.2E-17 101.6 8.1 103 221-327 2-109 (109)
59 cd04594 CBS_pair_EriC_assoc_ar 99.3 5.5E-12 1.2E-16 99.7 9.0 100 219-325 4-103 (104)
60 cd04595 CBS_pair_DHH_polyA_Pol 99.3 4.1E-12 8.8E-17 101.1 8.3 105 217-325 3-109 (110)
61 cd04586 CBS_pair_BON_assoc Thi 99.3 2.6E-12 5.7E-17 106.4 7.4 106 217-325 3-134 (135)
62 cd04617 CBS_pair_4 The CBS dom 99.3 4.8E-12 1E-16 102.4 8.7 107 217-325 2-117 (118)
63 cd04638 CBS_pair_25 The CBS do 99.3 6.7E-12 1.5E-16 99.3 9.4 104 217-325 2-105 (106)
64 cd04587 CBS_pair_CAP-ED_DUF294 99.3 3.8E-12 8.2E-17 101.6 8.0 106 217-325 2-112 (113)
65 cd04632 CBS_pair_19 The CBS do 99.3 5E-12 1.1E-16 103.6 8.8 107 217-325 2-127 (128)
66 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 4E-12 8.6E-17 101.5 7.9 107 217-325 3-113 (114)
67 PRK07807 inosine 5-monophospha 99.3 3.7E-12 8.1E-17 127.0 9.3 121 204-330 87-207 (479)
68 cd04637 CBS_pair_24 The CBS do 99.3 3.7E-12 8E-17 103.3 7.5 106 217-325 2-121 (122)
69 cd04620 CBS_pair_7 The CBS dom 99.3 6E-12 1.3E-16 101.0 8.3 105 218-325 3-114 (115)
70 cd04640 CBS_pair_27 The CBS do 99.3 5.3E-12 1.2E-16 103.4 8.0 106 218-325 3-125 (126)
71 cd04622 CBS_pair_9 The CBS dom 99.3 9E-12 2E-16 99.4 9.1 106 217-325 2-112 (113)
72 cd04589 CBS_pair_CAP-ED_DUF294 99.3 7.1E-12 1.5E-16 99.9 8.4 104 218-325 3-110 (111)
73 cd04591 CBS_pair_EriC_assoc_eu 99.3 5.7E-12 1.2E-16 100.2 7.7 101 216-325 2-104 (105)
74 cd04602 CBS_pair_IMPDH_2 This 99.3 6.6E-12 1.4E-16 100.8 8.0 107 217-325 3-113 (114)
75 cd04608 CBS_pair_PALP_assoc Th 99.3 2.9E-12 6.4E-17 105.1 6.0 108 217-326 3-123 (124)
76 cd04584 CBS_pair_ACT_assoc Thi 99.3 7.7E-12 1.7E-16 101.0 8.0 106 217-325 2-120 (121)
77 cd04609 CBS_pair_PALP_assoc2 T 99.3 1.1E-11 2.4E-16 98.1 7.8 104 217-325 2-109 (110)
78 TIGR01137 cysta_beta cystathio 99.3 7.2E-12 1.6E-16 125.2 7.9 118 203-327 332-453 (454)
79 cd04633 CBS_pair_20 The CBS do 99.3 1.1E-11 2.5E-16 100.1 7.6 105 217-325 2-120 (121)
80 cd04802 CBS_pair_3 The CBS dom 99.3 1.8E-11 4E-16 97.5 8.6 105 217-325 2-111 (112)
81 PLN02274 inosine-5'-monophosph 99.3 2.1E-11 4.6E-16 122.4 10.8 155 166-329 64-223 (505)
82 cd02205 CBS_pair The CBS domai 99.3 2.3E-11 5E-16 95.7 8.7 107 217-325 2-112 (113)
83 PTZ00314 inosine-5'-monophosph 99.3 2.4E-11 5.2E-16 122.0 10.7 150 166-328 60-218 (495)
84 cd04598 CBS_pair_GGDEF_assoc T 99.2 3.3E-11 7.2E-16 97.1 7.6 105 218-325 3-118 (119)
85 cd04634 CBS_pair_21 The CBS do 99.2 3.2E-11 6.9E-16 101.3 7.7 105 217-325 2-142 (143)
86 PRK07107 inosine 5-monophospha 99.2 5.7E-11 1.2E-15 119.2 10.6 129 191-327 87-219 (502)
87 cd04625 CBS_pair_12 The CBS do 99.2 4.9E-11 1.1E-15 95.0 8.2 105 217-325 2-111 (112)
88 TIGR00393 kpsF KpsF/GutQ famil 99.2 4.7E-11 1E-15 110.9 7.6 111 206-319 155-268 (268)
89 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 1.1E-10 2.3E-15 116.5 10.4 119 205-330 87-205 (475)
90 COG0517 FOG: CBS domain [Gener 99.0 1.4E-09 3.1E-14 87.0 9.1 111 209-324 2-117 (117)
91 cd04592 CBS_pair_EriC_assoc_eu 98.9 7.7E-09 1.7E-13 86.1 7.8 95 217-313 2-120 (133)
92 PRK14869 putative manganese-de 98.9 9.6E-09 2.1E-13 105.1 10.0 120 205-328 67-304 (546)
93 COG2905 Predicted signal-trans 98.8 4.3E-09 9.2E-14 103.8 5.3 121 203-328 146-270 (610)
94 PF00571 CBS: CBS domain CBS d 98.7 2.5E-08 5.5E-13 69.9 4.0 55 208-266 1-55 (57)
95 PF00571 CBS: CBS domain CBS d 98.6 1.5E-08 3.2E-13 71.1 2.2 55 274-328 2-56 (57)
96 PRK10070 glycine betaine trans 98.6 2.9E-07 6.2E-12 90.4 9.7 122 206-331 274-396 (400)
97 KOG1764 5'-AMP-activated prote 98.4 7.6E-07 1.6E-11 86.8 7.9 113 217-331 238-362 (381)
98 TIGR01186 proV glycine betaine 98.4 1.4E-06 3.1E-11 84.5 9.4 106 220-329 254-359 (363)
99 KOG0474 Cl- channel CLC-7 and 98.4 2.7E-07 5.8E-12 92.0 4.0 120 203-325 579-744 (762)
100 KOG2550 IMP dehydrogenase/GMP 98.3 1.3E-06 2.9E-11 83.2 6.6 153 165-326 71-226 (503)
101 cd04603 CBS_pair_KefB_assoc Th 97.9 2.5E-05 5.3E-10 62.1 5.2 56 205-264 55-110 (111)
102 cd04604 CBS_pair_KpsF_GutQ_ass 97.9 3.4E-05 7.3E-10 61.0 5.9 60 201-264 54-113 (114)
103 cd04801 CBS_pair_M50_like This 97.8 4E-05 8.6E-10 60.9 5.0 58 205-264 56-113 (114)
104 cd04597 CBS_pair_DRTGG_assoc2 97.7 6.5E-05 1.4E-09 60.3 5.8 55 206-264 58-112 (113)
105 PRK14869 putative manganese-de 97.7 2.2E-05 4.7E-10 80.5 3.2 118 205-326 245-391 (546)
106 KOG0475 Cl- channel CLC-3 and 97.7 7.2E-05 1.6E-09 75.1 6.7 118 207-326 544-693 (696)
107 cd04619 CBS_pair_6 The CBS dom 97.7 6.8E-05 1.5E-09 59.7 5.0 56 205-264 58-113 (114)
108 cd04617 CBS_pair_4 The CBS dom 97.6 7.9E-05 1.7E-09 59.8 5.2 61 203-264 55-117 (118)
109 cd04597 CBS_pair_DRTGG_assoc2 97.6 5.8E-05 1.3E-09 60.6 3.9 55 271-325 58-112 (113)
110 TIGR00400 mgtE Mg2+ transporte 97.6 5.7E-05 1.2E-09 75.6 4.4 112 204-326 193-304 (449)
111 PRK05567 inosine 5'-monophosph 97.6 0.00019 4.2E-09 72.5 8.2 116 205-326 146-265 (486)
112 PRK07107 inosine 5-monophospha 97.6 0.00022 4.7E-09 72.1 8.5 62 203-266 158-219 (502)
113 smart00116 CBS Domain in cysta 97.6 6.3E-05 1.4E-09 49.2 2.9 48 280-327 1-48 (49)
114 cd04585 CBS_pair_ACT_assoc2 Th 97.6 0.00011 2.5E-09 58.5 4.8 58 203-264 64-121 (122)
115 cd04607 CBS_pair_NTP_transfera 97.5 0.00016 3.4E-09 57.3 5.2 56 205-264 57-112 (113)
116 cd04640 CBS_pair_27 The CBS do 97.5 8.9E-05 1.9E-09 60.3 3.8 60 204-264 62-125 (126)
117 cd04623 CBS_pair_10 The CBS do 97.5 0.00016 3.5E-09 56.9 5.1 55 205-264 58-112 (113)
118 PRK07807 inosine 5-monophospha 97.5 0.00025 5.5E-09 71.2 7.2 99 206-313 148-251 (479)
119 cd04610 CBS_pair_ParBc_assoc T 97.5 0.0002 4.3E-09 55.9 5.2 56 205-264 51-106 (107)
120 cd04618 CBS_pair_5 The CBS dom 97.5 0.00022 4.8E-09 55.7 5.1 46 218-264 52-97 (98)
121 COG4175 ProV ABC-type proline/ 97.4 0.00019 4.1E-09 67.3 5.1 124 193-329 261-384 (386)
122 cd04587 CBS_pair_CAP-ED_DUF294 97.4 0.00023 5.1E-09 56.1 5.0 55 206-264 58-112 (113)
123 cd04582 CBS_pair_ABC_OpuCA_ass 97.4 0.00034 7.4E-09 54.5 5.9 54 207-264 52-105 (106)
124 TIGR01303 IMP_DH_rel_1 IMP deh 97.4 0.00049 1.1E-08 69.1 8.2 102 206-314 146-250 (475)
125 TIGR03520 GldE gliding motilit 97.4 0.023 5E-07 56.2 19.8 108 206-319 255-370 (408)
126 cd04620 CBS_pair_7 The CBS dom 97.4 0.00035 7.5E-09 55.4 5.8 56 205-264 57-114 (115)
127 cd04625 CBS_pair_12 The CBS do 97.4 0.00038 8.3E-09 54.8 5.9 55 205-264 57-111 (112)
128 cd04596 CBS_pair_DRTGG_assoc T 97.4 0.00028 6E-09 55.5 4.9 56 205-264 52-107 (108)
129 cd04615 CBS_pair_2 The CBS dom 97.4 0.0003 6.6E-09 55.5 5.1 57 204-264 56-112 (113)
130 cd04600 CBS_pair_HPP_assoc Thi 97.4 0.00028 6.1E-09 56.7 5.0 57 204-264 67-123 (124)
131 cd04630 CBS_pair_17 The CBS do 97.4 0.00032 6.9E-09 55.7 5.2 56 204-264 58-113 (114)
132 cd04622 CBS_pair_9 The CBS dom 97.4 0.00035 7.6E-09 55.0 5.4 55 206-264 58-112 (113)
133 cd04614 CBS_pair_1 The CBS dom 97.3 0.00027 5.8E-09 54.8 4.4 49 279-327 1-49 (96)
134 cd04627 CBS_pair_14 The CBS do 97.3 0.0004 8.6E-09 56.0 5.4 52 208-263 70-121 (123)
135 PTZ00314 inosine-5'-monophosph 97.3 0.0008 1.7E-08 68.0 8.6 61 204-266 157-217 (495)
136 KOG1764 5'-AMP-activated prote 97.3 0.00037 8E-09 68.1 5.9 116 213-329 159-287 (381)
137 cd04601 CBS_pair_IMPDH This cd 97.3 0.00046 1E-08 54.0 5.3 56 205-264 53-109 (110)
138 cd04613 CBS_pair_SpoIVFB_EriC_ 97.3 0.00046 1E-08 54.3 5.3 57 205-264 57-113 (114)
139 cd04631 CBS_pair_18 The CBS do 97.3 0.00036 7.8E-09 56.1 4.7 57 204-264 68-124 (125)
140 cd04621 CBS_pair_8 The CBS dom 97.3 0.0004 8.8E-09 57.4 5.0 56 204-264 79-134 (135)
141 cd04636 CBS_pair_23 The CBS do 97.3 0.00037 8.1E-09 57.0 4.8 55 205-264 77-131 (132)
142 PLN02274 inosine-5'-monophosph 97.3 0.0003 6.5E-09 71.2 4.9 61 204-266 161-221 (505)
143 cd04802 CBS_pair_3 The CBS dom 97.3 0.00047 1E-08 54.3 5.1 56 204-264 56-111 (112)
144 cd04584 CBS_pair_ACT_assoc Thi 97.3 0.0004 8.6E-09 55.5 4.6 57 203-264 64-120 (121)
145 TIGR03415 ABC_choXWV_ATP choli 97.3 0.00047 1E-08 67.5 5.9 117 196-329 264-381 (382)
146 cd04803 CBS_pair_15 The CBS do 97.3 0.00053 1.1E-08 54.9 5.3 57 204-264 65-121 (122)
147 cd04633 CBS_pair_20 The CBS do 97.2 0.00032 7E-09 56.1 4.0 57 203-264 64-120 (121)
148 cd04606 CBS_pair_Mg_transporte 97.2 0.00048 1E-08 54.2 4.9 57 205-265 52-108 (109)
149 cd04602 CBS_pair_IMPDH_2 This 97.2 0.00044 9.5E-09 54.9 4.7 57 206-264 57-113 (114)
150 cd04593 CBS_pair_EriC_assoc_ba 97.2 0.00061 1.3E-08 54.1 5.5 56 206-264 58-114 (115)
151 cd04583 CBS_pair_ABC_OpuCA_ass 97.2 0.00059 1.3E-08 53.3 5.1 55 206-264 54-108 (109)
152 cd04586 CBS_pair_BON_assoc Thi 97.2 0.00038 8.3E-09 57.1 4.1 57 203-264 78-134 (135)
153 COG0517 FOG: CBS domain [Gener 97.2 0.00099 2.2E-08 52.7 6.4 53 207-263 63-117 (117)
154 cd04611 CBS_pair_PAS_GGDEF_DUF 97.2 0.00067 1.5E-08 53.1 5.3 57 204-264 54-110 (111)
155 cd04626 CBS_pair_13 The CBS do 97.2 0.00066 1.4E-08 53.4 5.1 55 205-264 56-110 (111)
156 cd04589 CBS_pair_CAP-ED_DUF294 97.2 0.00062 1.3E-08 53.6 4.8 56 204-264 55-110 (111)
157 PRK11543 gutQ D-arabinose 5-ph 97.2 0.00078 1.7E-08 64.2 6.4 57 205-265 262-318 (321)
158 cd04592 CBS_pair_EriC_assoc_eu 97.2 0.00041 8.8E-09 57.5 3.8 50 280-329 2-51 (133)
159 cd04599 CBS_pair_GGDEF_assoc2 97.2 0.00063 1.4E-08 52.8 4.7 55 205-264 50-104 (105)
160 cd04635 CBS_pair_22 The CBS do 97.2 0.00064 1.4E-08 54.4 4.8 57 204-264 65-121 (122)
161 cd04594 CBS_pair_EriC_assoc_ar 97.1 0.00082 1.8E-08 52.5 5.3 54 206-264 50-103 (104)
162 cd04612 CBS_pair_SpoIVFB_EriC_ 97.1 0.00093 2E-08 52.3 5.6 55 206-264 56-110 (111)
163 cd04641 CBS_pair_28 The CBS do 97.1 0.00047 1E-08 55.3 3.9 48 280-327 2-49 (120)
164 PRK10892 D-arabinose 5-phospha 97.1 0.00084 1.8E-08 64.2 6.1 58 203-265 266-323 (326)
165 COG3448 CBS-domain-containing 97.1 0.0003 6.6E-09 64.9 2.8 57 270-326 244-300 (382)
166 cd04595 CBS_pair_DHH_polyA_Pol 97.1 0.00078 1.7E-08 52.9 4.8 56 204-264 54-109 (110)
167 cd04639 CBS_pair_26 The CBS do 97.1 0.00082 1.8E-08 52.8 4.8 55 206-264 56-110 (111)
168 cd04608 CBS_pair_PALP_assoc Th 97.1 0.00069 1.5E-08 55.1 4.4 51 279-329 2-52 (124)
169 COG2524 Predicted transcriptio 97.1 0.00055 1.2E-08 62.0 3.9 58 205-266 233-290 (294)
170 smart00116 CBS Domain in cysta 97.1 0.0009 1.9E-08 43.5 4.0 45 218-264 2-46 (49)
171 cd04629 CBS_pair_16 The CBS do 97.0 0.00074 1.6E-08 53.3 4.1 55 205-264 59-113 (114)
172 cd04637 CBS_pair_24 The CBS do 97.0 0.0009 2E-08 53.6 4.5 55 206-264 67-121 (122)
173 cd04800 CBS_pair_CAP-ED_DUF294 97.0 0.001 2.3E-08 52.2 4.6 55 205-264 56-110 (111)
174 cd04632 CBS_pair_19 The CBS do 96.9 0.0013 2.7E-08 53.3 4.7 58 204-264 69-127 (128)
175 cd04643 CBS_pair_30 The CBS do 96.9 0.001 2.2E-08 52.7 4.0 49 280-328 2-50 (116)
176 cd04588 CBS_pair_CAP-ED_DUF294 96.9 0.0018 3.9E-08 50.7 5.1 55 206-264 55-109 (110)
177 cd04642 CBS_pair_29 The CBS do 96.9 0.0022 4.9E-08 51.8 5.6 51 210-264 75-125 (126)
178 cd04624 CBS_pair_11 The CBS do 96.8 0.0018 4E-08 50.9 4.8 50 279-328 1-50 (112)
179 cd04605 CBS_pair_MET2_assoc Th 96.8 0.0014 3E-08 51.3 4.1 49 279-327 2-50 (110)
180 cd04590 CBS_pair_CorC_HlyC_ass 96.8 0.0017 3.7E-08 51.0 4.5 53 207-264 58-110 (111)
181 PRK01862 putative voltage-gate 96.8 0.0017 3.7E-08 67.0 5.4 59 205-266 511-570 (574)
182 cd04634 CBS_pair_21 The CBS do 96.8 0.0019 4.1E-08 53.8 4.6 56 204-264 87-142 (143)
183 cd04591 CBS_pair_EriC_assoc_eu 96.6 0.0033 7.2E-08 49.4 4.9 49 211-264 56-104 (105)
184 COG2905 Predicted signal-trans 96.6 0.0024 5.2E-08 63.9 4.9 71 192-267 197-270 (610)
185 cd02205 CBS_pair The CBS domai 96.6 0.0026 5.6E-08 49.1 4.2 51 280-330 2-52 (113)
186 TIGR00393 kpsF KpsF/GutQ famil 96.6 0.0022 4.9E-08 59.3 4.1 56 272-327 156-212 (268)
187 cd04609 CBS_pair_PALP_assoc2 T 96.6 0.0025 5.4E-08 49.7 3.7 48 280-328 2-49 (110)
188 TIGR01137 cysta_beta cystathio 96.5 0.0027 5.9E-08 63.5 4.6 58 271-328 335-392 (454)
189 cd04598 CBS_pair_GGDEF_assoc T 96.5 0.003 6.6E-08 50.2 3.9 48 279-327 1-49 (119)
190 TIGR01302 IMP_dehydrog inosine 96.4 0.0039 8.5E-08 62.4 5.1 59 205-266 142-200 (450)
191 cd04638 CBS_pair_25 The CBS do 96.3 0.0062 1.3E-07 47.4 4.6 54 206-264 52-105 (106)
192 PRK15094 magnesium/cobalt effl 96.3 0.0075 1.6E-07 56.9 5.8 117 207-340 134-259 (292)
193 COG3620 Predicted transcriptio 95.9 0.0045 9.8E-08 52.3 1.9 57 272-329 66-122 (187)
194 COG2239 MgtE Mg/Co/Ni transpor 94.7 0.029 6.2E-07 56.0 3.7 60 203-266 193-252 (451)
195 COG4109 Predicted transcriptio 94.3 0.049 1.1E-06 51.8 4.0 59 204-266 247-305 (432)
196 KOG2550 IMP dehydrogenase/GMP 94.3 0.038 8.2E-07 53.5 3.3 71 187-265 156-226 (503)
197 TIGR01186 proV glycine betaine 93.3 0.093 2E-06 51.1 4.1 57 206-267 302-358 (363)
198 COG1125 OpuBA ABC-type proline 90.5 0.46 9.9E-06 43.8 4.9 99 218-326 189-308 (309)
199 PRK10070 glycine betaine trans 90.1 0.34 7.5E-06 47.8 4.1 58 205-267 336-393 (400)
200 PRK11573 hypothetical protein; 89.7 0.88 1.9E-05 45.1 6.7 79 217-298 263-350 (413)
201 COG1253 TlyC Hemolysins and re 78.2 9.3 0.0002 38.1 8.1 99 194-298 259-367 (429)
202 KOG0474 Cl- channel CLC-7 and 74.4 4.6 0.0001 41.6 4.6 54 208-265 692-745 (762)
203 COG4536 CorB Putative Mg2+ and 69.6 8.4 0.00018 37.4 5.0 91 206-298 265-362 (423)
204 TIGR03415 ABC_choXWV_ATP choli 67.6 5.7 0.00012 39.0 3.6 54 206-266 326-379 (382)
205 COG1125 OpuBA ABC-type proline 55.9 15 0.00032 34.2 3.8 59 204-264 247-307 (309)
206 KOG0476 Cl- channel CLC-2 and 51.7 9.7 0.00021 40.2 2.1 59 204-265 586-645 (931)
207 PF03563 Bunya_G2: Bunyavirus 51.1 62 0.0013 30.0 6.9 39 108-160 197-235 (285)
208 PF02743 Cache_1: Cache domain 50.2 20 0.00044 26.2 3.2 49 243-316 19-67 (81)
209 COG2216 KdpB High-affinity K+ 45.1 27 0.00059 35.5 4.0 34 230-265 417-450 (681)
210 PF11131 PhrC_PhrF: Rap-phr ex 44.5 20 0.00043 22.4 1.9 17 21-37 6-22 (37)
211 TIGR00811 sit silicon transpor 43.6 48 0.001 33.2 5.3 52 110-163 368-427 (545)
212 PHA02975 hypothetical protein; 43.4 47 0.001 24.0 3.9 10 22-31 51-60 (69)
213 COG4175 ProV ABC-type proline/ 42.5 25 0.00054 33.8 3.1 48 217-267 336-383 (386)
214 cd00565 ThiS ThiaminS ubiquiti 31.4 57 0.0012 23.0 2.9 31 279-309 6-36 (65)
215 CHL00190 psaM photosystem I su 30.8 37 0.0008 20.5 1.5 6 1-6 1-6 (30)
216 PF05198 IF3_N: Translation in 30.2 28 0.0006 25.8 1.1 25 302-326 12-36 (76)
217 PHA02819 hypothetical protein; 29.5 1.1E+02 0.0023 22.3 4.0 10 22-31 53-62 (71)
218 PRK07440 hypothetical protein; 29.0 64 0.0014 23.3 2.9 31 280-310 12-42 (70)
219 COG4535 CorC Putative Mg2+ and 28.4 1.1E+02 0.0025 28.0 4.8 86 207-298 134-228 (293)
220 PRK08053 sulfur carrier protei 27.7 71 0.0015 22.6 2.9 30 280-309 8-37 (66)
221 KOG0476 Cl- channel CLC-2 and 27.2 33 0.00072 36.4 1.4 62 270-331 587-650 (931)
222 KOG0475 Cl- channel CLC-3 and 26.8 85 0.0018 32.7 4.2 53 208-265 641-693 (696)
223 PF01595 DUF21: Domain of unkn 26.3 3.9E+02 0.0085 22.4 15.2 7 125-131 106-112 (183)
224 PF15284 PAGK: Phage-encoded v 25.9 97 0.0021 21.9 3.1 21 18-38 7-27 (61)
225 CHL00038 psbL photosystem II p 25.5 1.1E+02 0.0024 19.3 2.9 23 9-31 14-36 (38)
226 PRK05863 sulfur carrier protei 24.7 83 0.0018 22.2 2.8 39 280-323 8-46 (65)
227 PRK05659 sulfur carrier protei 24.6 88 0.0019 21.9 2.9 30 280-309 8-37 (66)
228 PF02419 PsbL: PsbL protein; 24.0 1.4E+02 0.0031 18.8 3.2 23 9-31 13-35 (37)
229 TIGR01683 thiS thiamine biosyn 23.0 99 0.0021 21.6 2.9 29 281-309 7-35 (64)
230 PRK06286 putative monovalent c 21.5 2E+02 0.0044 22.2 4.4 31 13-43 2-32 (91)
231 PRK12585 putative monovalent c 21.2 5.8E+02 0.013 22.6 9.7 35 15-49 4-38 (197)
No 1
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-67 Score=487.11 Aligned_cols=314 Identities=25% Similarity=0.394 Sum_probs=279.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHH
Q 018729 14 FFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFL 93 (351)
Q Consensus 14 ~~~~l~~~~~li~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~~ 93 (351)
.|..++.+++|+++||||||+|||++++||.|+++++++|++ +|+++.+++++|+++++++++|||++|++.+.+.
T Consensus 2 ~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~----~Akrv~kLL~k~drlig~iLIGNNLvNilasala 77 (423)
T COG4536 2 TWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNR----GAKRVEKLLEKPDRLIGTILIGNNLVNILASALA 77 (423)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccch----hhHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence 577788889999999999999999999999999999999997 5789999999999999999999999998876554
Q ss_pred Hh----hhhhH---HHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HhccCC
Q 018729 94 DK----LVPPW---AAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDL---MLGKGH 163 (351)
Q Consensus 94 ~~----~~~~~---~a~~i~t~l~lvfgEiiPK~la~~~~~~~a~~~a~~~~~~~~l~~P~~~~~~~~~~~---l~~~~~ 163 (351)
.. +++.+ .|..+.|+++++|+|++||++|+.|||++++..++++.++.++|+|++|+++++++. ++|.+.
T Consensus 78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~ 157 (423)
T COG4536 78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL 157 (423)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 33 23332 467778899999999999999999999999999999999999999999999998775 467542
Q ss_pred ----CccccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcC
Q 018729 164 ----AVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 239 (351)
Q Consensus 164 ----~~~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~ 239 (351)
+...+.||+|.+++. ++++|...+++++|+.+++++++++|+|||+||+++..++.|++.+ ++.+.+.+++
T Consensus 158 ~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~ 232 (423)
T COG4536 158 DQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP 232 (423)
T ss_pred ccccccccCHHHHHHHHHH----hhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence 346789999999984 5566777788999999999999999999999999999999999998 9999999999
Q ss_pred CcEEeeEcCCCCceeEEeEhhhhcccccccc----ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcc
Q 018729 240 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDA----VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKK 315 (351)
Q Consensus 240 ~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~----~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~ 315 (351)
|+|+|+|+++.|+++|++|.||++++..+.+ .++..+ .++|+|||+++++.+.|..||+++.|+++||||||.+.
T Consensus 233 HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~ 311 (423)
T COG4536 233 HTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRA-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQ 311 (423)
T ss_pred CCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHH-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEE
Confidence 9999999999999999999999998765533 223333 58999999999999999999999999999999999999
Q ss_pred cccchhhhhccccCCCCCCCCc
Q 018729 316 EGELFKDNCKKPRGQPEKSSQK 337 (351)
Q Consensus 316 GiVT~~Dil~~l~~~~~~~~~~ 337 (351)
|+||.+|++|++.|+..+....
T Consensus 312 GLVTLEDIlEEIVGdftde~d~ 333 (423)
T COG4536 312 GLVTLEDILEEIVGDFTDEHDT 333 (423)
T ss_pred eeeeHHHHHHHHhccccccCcc
Confidence 9999999999999998754443
No 2
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=4.5e-65 Score=498.63 Aligned_cols=302 Identities=25% Similarity=0.422 Sum_probs=266.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHh----hh
Q 018729 22 IALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDK----LV 97 (351)
Q Consensus 22 ~~li~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~~~~----~~ 97 (351)
++|+++||||||+|+|++|+++.|+++++++|++ +|++++++++||+++++|+|+|||++|++++.++.. ++
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577899999999999999999999999999875 577899999999999999999999999887654332 22
Q ss_pred hh----H----HHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hccCCCcc
Q 018729 98 PP----W----AAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLM---LGKGHAVL 166 (351)
Q Consensus 98 ~~----~----~a~~i~t~l~lvfgEiiPK~la~~~~~~~a~~~a~~~~~~~~l~~P~~~~~~~~~~~l---~~~~~~~~ 166 (351)
+. + .+++++|+++++|||++||++|.+||+++++++++|+++++++++|++|+++++++++ +|.+. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~ 156 (408)
T TIGR03520 78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN 156 (408)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence 21 1 2345567889999999999999999999999999999999999999999999988765 45443 35
Q ss_pred ccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeE
Q 018729 167 LRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVY 246 (351)
Q Consensus 167 ~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~ 246 (351)
+|+|||+.+++. ++++| ++++|++|++|+|+|++++|+|+||||+++++++.+++++ ++++.+.+++|||+|||
T Consensus 157 ~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~ 230 (408)
T TIGR03520 157 ISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY 230 (408)
T ss_pred CCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence 899999999984 44556 5899999999999999999999999999999999999998 99999999999999999
Q ss_pred cCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729 247 SGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (351)
Q Consensus 247 ~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~ 326 (351)
+++.|+++|++|.||++....+++.++.++ ++++.+||+++++.++++.||+++.|+|+|+||||+..|+||.+|++++
T Consensus 231 ~~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDilee 309 (408)
T TIGR03520 231 KETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEE 309 (408)
T ss_pred cCCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHH
Confidence 988899999999999986543333457776 7899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 018729 327 PRGQPEKSS 335 (351)
Q Consensus 327 l~~~~~~~~ 335 (351)
+.|+..++.
T Consensus 310 ivgei~de~ 318 (408)
T TIGR03520 310 IVGDISDEF 318 (408)
T ss_pred HhCCCCCcC
Confidence 999876543
No 3
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-65 Score=498.97 Aligned_cols=300 Identities=20% Similarity=0.318 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHh----hhh--
Q 018729 25 VCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDK----LVP-- 98 (351)
Q Consensus 25 i~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~~~~----~~~-- 98 (351)
+++||||||+|+|++|+++.|+++++++|++ +|++++++++||+++|+|+|+|||++|++++.+... +++
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~ 77 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA 77 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4679999999999999999999999999986 477899999999999999999999999876654322 222
Q ss_pred -hHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hccCC----CccccHH
Q 018729 99 -PWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLM---LGKGH----AVLLRRA 170 (351)
Q Consensus 99 -~~~a~~i~t~l~lvfgEiiPK~la~~~~~~~a~~~a~~~~~~~~l~~P~~~~~~~~~~~l---~~~~~----~~~~t~e 170 (351)
.+.+++++|+++++|||++||++|.+||+++|+++++|+++++++++|++|+++++++.+ +|.++ ...+|+|
T Consensus 78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e 157 (413)
T PRK11573 78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE 157 (413)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence 223556778899999999999999999999999999999999999999999998887754 56432 2468999
Q ss_pred HHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCC
Q 018729 171 ELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP 250 (351)
Q Consensus 171 El~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~ 250 (351)
||+.+++. +++ .++++|++|++|+|+|++++|+|+||||+++++++.+++++ ++++.+.+++|||+|||+++.
T Consensus 158 El~~lv~~----~~~--~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~ 230 (413)
T PRK11573 158 ELRTIVHE----SRS--QISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL 230 (413)
T ss_pred HHHHHHHH----Hhh--hcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence 99999983 322 59999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CceeEEeEhhhhcccccc-cc---ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729 251 TNIIGLILVKNLLSVDYR-DA---VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (351)
Q Consensus 251 d~ivGiv~~kdll~~~~~-~~---~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~ 326 (351)
|+++|++|.||++....+ ++ .++.++ +||+.+||+++++.++|++||+++.|+|+|+||||+..|+||.+|++++
T Consensus 231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEe 309 (413)
T PRK11573 231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEE 309 (413)
T ss_pred CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHH
Confidence 999999999999864322 11 223354 7899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 018729 327 PRGQPEKSSQ 336 (351)
Q Consensus 327 l~~~~~~~~~ 336 (351)
+.|++.++.+
T Consensus 310 ivGei~de~d 319 (413)
T PRK11573 310 IVGDFTTSMS 319 (413)
T ss_pred HhCCCCcccC
Confidence 9999876543
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=6.3e-61 Score=473.04 Aligned_cols=313 Identities=27% Similarity=0.464 Sum_probs=272.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHH
Q 018729 14 FFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFL 93 (351)
Q Consensus 14 ~~~~l~~~~~li~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~~ 93 (351)
.+..++++++|+++|||||++|+|++|++|.|+++++++|++ +|..++++.++|+.+++++|+|||++++..+..+
T Consensus 3 ~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~----~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~ 78 (429)
T COG1253 3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNK----RAKAALKLIERLNRYLSTVQLGITLVSLLLGAVG 78 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCH----hHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 445667788899999999999999999999999999999875 5778999999999999999999999998766544
Q ss_pred Hhhh----hhHH-----H----HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh-
Q 018729 94 DKLV----PPWA-----A----VLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLML- 159 (351)
Q Consensus 94 ~~~~----~~~~-----a----~~i~t~l~lvfgEiiPK~la~~~~~~~a~~~a~~~~~~~~l~~P~~~~~~~~~~~l~- 159 (351)
...+ ..+. + ++++|+++++|||++||++|++||++++++.++++++++++++|++|++++++++++
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~ 158 (429)
T COG1253 79 EPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILR 158 (429)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 1111 1 456688999999999999999999999999999999999999999999999988764
Q ss_pred --ccC----CCccccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHH
Q 018729 160 --GKG----HAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLN 233 (351)
Q Consensus 160 --~~~----~~~~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~ 233 (351)
|.+ +....+++|++ +++ ++.++|.++++|++|++|+|+|++++|+++||||+++++++.+.+.+ ++.+
T Consensus 159 l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~ 232 (429)
T COG1253 159 LFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIE 232 (429)
T ss_pred HcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHH
Confidence 433 22346777888 776 57789999999999999999999999999999999999999999998 9999
Q ss_pred HHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc--ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecC
Q 018729 234 AIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL 311 (351)
Q Consensus 234 ~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~--~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~ 311 (351)
.+.+++|||+|||+++.|+++|++|.||++....+++ ...... .+|+++||+++++.++|++||+++.|||+|+|||
T Consensus 233 ~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy 311 (429)
T COG1253 233 LILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDEY 311 (429)
T ss_pred HHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhc-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence 9999999999999988999999999999998765543 222222 5699999999999999999999999999999999
Q ss_pred CCcccccchhhhhccccCCCCCCCCc
Q 018729 312 NEKKEGELFKDNCKKPRGQPEKSSQK 337 (351)
Q Consensus 312 g~~~GiVT~~Dil~~l~~~~~~~~~~ 337 (351)
|.+.|+||.+|+++++.|+..++.+.
T Consensus 312 G~~~GlVTleDIiEeIvGei~de~d~ 337 (429)
T COG1253 312 GGVEGLVTLEDIIEEIVGEIPDEHDE 337 (429)
T ss_pred CCeEEEeEHHHHHHHHhCCCcCcccc
Confidence 99999999999999999988766543
No 5
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-34 Score=249.28 Aligned_cols=179 Identities=22% Similarity=0.394 Sum_probs=160.3
Q ss_pred HHHHHHHHhccCCCccccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHH
Q 018729 151 ISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLD 230 (351)
Q Consensus 151 ~~~~~~~l~~~~~~~~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e 230 (351)
+..+++.+|..++ -+++||-.+++ .+++.+.++++..+|++++++..+.+|+|||+||+++++++.+++++ +
T Consensus 19 fe~L~~~~f~gEp---knr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~ 90 (293)
T COG4535 19 FERLLSQLFHGEP---KNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E 90 (293)
T ss_pred HHHHHHHHhcCCC---cCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence 3444555665443 36999999998 46778999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEE
Q 018729 231 TLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVY 308 (351)
Q Consensus 231 ~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVv 308 (351)
.+..+.++.||||||+.++.|++.||++.|||++....+ ...++++ .||..+|||++.+..+|++|+.++.|||+|+
T Consensus 91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIVi 169 (293)
T COG4535 91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVI 169 (293)
T ss_pred HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEE
Confidence 999999999999999999999999999999999865433 3567886 8999999999999999999999999999999
Q ss_pred ecCCCcccccchhhhhccccCCCCCCCCcc
Q 018729 309 KDLNEKKEGELFKDNCKKPRGQPEKSSQKG 338 (351)
Q Consensus 309 De~g~~~GiVT~~Dil~~l~~~~~~~~~~~ 338 (351)
||||++-|+||.+|+++.+.|+++.+.+.-
T Consensus 170 DEfGgVsGLVTIEDiLEqIVGdIEDE~Dee 199 (293)
T COG4535 170 DEFGGVSGLVTIEDILEQIVGDIEDEYDEE 199 (293)
T ss_pred eccCCeeeeEEHHHHHHHHhcccccccchh
Confidence 999999999999999999999998876643
No 6
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=100.00 E-value=3.9e-34 Score=284.18 Aligned_cols=327 Identities=50% Similarity=0.707 Sum_probs=288.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHH-hHHHHHHHHHcchHHHHHHHHHHHHHH
Q 018729 8 ACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRI-HAAKIFPVVKNQHLLLCTLLIGNSLAM 86 (351)
Q Consensus 8 ~~~~~~~~~~l~~~~~li~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~-~a~~~l~l~~~~~~~l~tilign~~~~ 86 (351)
.+|.+.++...-++++|+++++++||.+.++++++-..++.+.+.|..++++ .+.++....++.+.+++|++++|.+++
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~~~~ 85 (498)
T KOG2118|consen 6 PKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNSIAT 85 (498)
T ss_pred cccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhhhcc
Confidence 4677777777777777999999999999999999999999999999988775 567788888999999999999999999
Q ss_pred HH-HHHHHHhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCc
Q 018729 87 EA-LPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAV 165 (351)
Q Consensus 87 ~~-~~~~~~~~~~~~~a~~i~t~l~lvfgEiiPK~la~~~~~~~a~~~a~~~~~~~~l~~P~~~~~~~~~~~l~~~~~~~ 165 (351)
.+ ++.+.....+.|.++.+++..++.|||++|++++.+|.-.+...+.|+.+++.++++|+.|++++. ++.+|...+.
T Consensus 86 e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~~~~ 164 (498)
T KOG2118|consen 86 EAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLNLGE 164 (498)
T ss_pred ccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhcccccc
Confidence 88 887777777778888889999999999999999999999999999999999999999999999988 7788887766
Q ss_pred cccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEee
Q 018729 166 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV 245 (351)
Q Consensus 166 ~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV 245 (351)
...+.++..++..+++|+.+ |.+..+|..++.+++++.++.++|+|||-.+++.++.+..++++....+.++||||+||
T Consensus 165 ~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv 243 (498)
T KOG2118|consen 165 FLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPV 243 (498)
T ss_pred chhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeee
Confidence 77789999999998888766 99999999999999999999999999999999999999999878888889999999999
Q ss_pred EcCCCCceeEEeEhhhhcccc----ccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchh
Q 018729 246 YSGNPTNIIGLILVKNLLSVD----YRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFK 321 (351)
Q Consensus 246 ~~~~~d~ivGiv~~kdll~~~----~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~ 321 (351)
|+++..+.+|.+..+.++... .....++.+.+.++.+.+|++++..+.++.||+.+.|+++|.. .....|++|..
T Consensus 244 ~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~ 322 (498)
T KOG2118|consen 244 YEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLE 322 (498)
T ss_pred ccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEecc
Confidence 998888888887777776654 2234567777789999999999999999999999999999987 57789999999
Q ss_pred hhhccccCCCCCCCCcc
Q 018729 322 DNCKKPRGQPEKSSQKG 338 (351)
Q Consensus 322 Dil~~l~~~~~~~~~~~ 338 (351)
|+ +...++.+.+....
T Consensus 323 ~~-~~~~~ev~de~d~~ 338 (498)
T KOG2118|consen 323 DL-EEVVKEVEDEEDKE 338 (498)
T ss_pred ch-hhhcceeccccccc
Confidence 99 77776665554433
No 7
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.97 E-value=9.1e-32 Score=252.48 Aligned_cols=172 Identities=23% Similarity=0.393 Sum_probs=152.7
Q ss_pred HHHhccCCCccccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHH
Q 018729 156 DLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAI 235 (351)
Q Consensus 156 ~~l~~~~~~~~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~ 235 (351)
..++|.+. .|+|||+.+++ ++.++|.++++|++|++|+|+|++++|+++|+||.++++++.+++++ ++++.+
T Consensus 24 ~~~~~~~~---~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i 95 (292)
T PRK15094 24 SQLFHGEP---KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI 95 (292)
T ss_pred HHHcCCCC---CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHH
Confidence 33555543 48999999998 46778999999999999999999999999999999999999999998 999999
Q ss_pred HhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCC
Q 018729 236 MTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNE 313 (351)
Q Consensus 236 ~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~ 313 (351)
.+++|+|+|||+++.|+++|++|.||++..... ...++.++ ++++++||+++++.++|+.|++++.|+|+|+||||.
T Consensus 96 ~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~ 174 (292)
T PRK15094 96 IESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGG 174 (292)
T ss_pred HhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 999999999999877899999999999864322 12346776 788899999999999999999999999999999999
Q ss_pred cccccchhhhhccccCCCCCCCC
Q 018729 314 KKEGELFKDNCKKPRGQPEKSSQ 336 (351)
Q Consensus 314 ~~GiVT~~Dil~~l~~~~~~~~~ 336 (351)
++|+||++|+++.+.|++..+..
T Consensus 175 viGiVTleDIle~ivGei~de~d 197 (292)
T PRK15094 175 VSGLVTIEDILELIVGEIEDEYD 197 (292)
T ss_pred EEEEeEHHHHHHHHhCCCccccc
Confidence 99999999999999998766544
No 8
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.97 E-value=1.4e-29 Score=222.31 Aligned_cols=168 Identities=29% Similarity=0.484 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHhh-
Q 018729 18 VLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKL- 96 (351)
Q Consensus 18 l~~~~~li~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~~~~~- 96 (351)
++++++++++|||||++|+|++++++.+++.++++|++ +++++.++++||+++++|+++||++++++.+.+....
T Consensus 3 l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~----~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~ 78 (183)
T PF01595_consen 3 LLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDK----RARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLA 78 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999885 5778999999999999999999999998776443332
Q ss_pred ---hh----hHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh---ccCC--C
Q 018729 97 ---VP----PWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLML---GKGH--A 164 (351)
Q Consensus 97 ---~~----~~~a~~i~t~l~lvfgEiiPK~la~~~~~~~a~~~a~~~~~~~~l~~P~~~~~~~~~~~l~---~~~~--~ 164 (351)
++ .+.+.++.++++++|||++||++|.+||++++.+.+|++++++++++|+++++.++.+++. |.+. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~ 158 (183)
T PF01595_consen 79 SNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEED 158 (183)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 22 2345566778899999999999999999999999999999999999999999999888654 4432 4
Q ss_pred ccccHHHHHHHHHhcccccccCCCCCHHH
Q 018729 165 VLLRRAELKTFVNFHGNEAGKGGDLTHDE 193 (351)
Q Consensus 165 ~~~t~eEl~~lv~~~~~e~~~~g~l~~~e 193 (351)
..+|+|||+.+++ +++++|.++++|
T Consensus 159 ~~~s~eel~~lv~----~~~e~G~i~~~E 183 (183)
T PF01595_consen 159 PAVSEEELRSLVE----EGEEEGVIEEEE 183 (183)
T ss_pred CCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence 5789999999999 577889999876
No 9
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.73 E-value=1.7e-17 Score=165.13 Aligned_cols=155 Identities=13% Similarity=0.081 Sum_probs=129.7
Q ss_pred cccHHHHHHHHHhcccccccC------CCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHh--
Q 018729 166 LLRRAELKTFVNFHGNEAGKG------GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMT-- 237 (351)
Q Consensus 166 ~~t~eEl~~lv~~~~~e~~~~------g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~-- 237 (351)
.++.||+..+++. ..++ +.++++|++.+++++++++.+|+++|++ ++.+++.+++++ ++++.+.+
T Consensus 89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 4678888888873 3333 4799999999999999999999999985 789999999998 99999975
Q ss_pred -cCCcE--EeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCc
Q 018729 238 -MGHSR--VPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEK 314 (351)
Q Consensus 238 -~~~sr--~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~ 314 (351)
.++++ +||.++ .++++|+++.+|++... ++.+++++|.++++++++++++.++++.|++++.+.++|+|++|++
T Consensus 162 ~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a~--~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~l 238 (449)
T TIGR00400 162 KTKEDIYTLYVTNE-SKHLKGVLSIRDLILAK--PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRL 238 (449)
T ss_pred CCccceeEEEEECC-CCeEEEEEEHHHHhcCC--CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeE
Confidence 33444 445454 48999999999998643 3357888866667789999999999999999999999999999999
Q ss_pred ccccchhhhhccccCC
Q 018729 315 KEGELFKDNCKKPRGQ 330 (351)
Q Consensus 315 ~GiVT~~Dil~~l~~~ 330 (351)
+|+||.+|+++.+..+
T Consensus 239 vGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 239 VGIVTVDDIIDVIQSE 254 (449)
T ss_pred EEEEEHHHHHHHHHhh
Confidence 9999999999877554
No 10
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.72 E-value=3.8e-17 Score=162.42 Aligned_cols=151 Identities=15% Similarity=0.225 Sum_probs=129.9
Q ss_pred ccccHHHHHHHHHhcccccccCCCCCH-----HHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcC
Q 018729 165 VLLRRAELKTFVNFHGNEAGKGGDLTH-----DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 239 (351)
Q Consensus 165 ~~~t~eEl~~lv~~~~~e~~~~g~l~~-----~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~ 239 (351)
..+|++|+..++.. .+..|.+++ +|++++++++++++. |++ +++++++++++. ++++.+.+++
T Consensus 43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 45799999999874 345788984 899999999987764 544 568899999998 9999999999
Q ss_pred CcEEeeEcCCC--CceeEEeEhhhhcccccccccccccccc-ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCccc
Q 018729 240 HSRVPVYSGNP--TNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKE 316 (351)
Q Consensus 240 ~sr~PV~~~~~--d~ivGiv~~kdll~~~~~~~~~l~~i~~-~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~G 316 (351)
++++||++++. ++++|+|+.+|++... ..+.++.++|. .+++++++++++.++++.|++++.+.++|+|++|+++|
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvG 189 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITKRDIRFVK-DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVG 189 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEHHHHhhhh-cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence 99999998754 6999999999997543 23457888855 38999999999999999999999999999999999999
Q ss_pred ccchhhhhcccc
Q 018729 317 GELFKDNCKKPR 328 (351)
Q Consensus 317 iVT~~Dil~~l~ 328 (351)
+||.+|+++.+.
T Consensus 190 iVT~~DIl~~~~ 201 (450)
T TIGR01302 190 LITMKDIVKRRK 201 (450)
T ss_pred EEEhHHhhhccc
Confidence 999999999864
No 11
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.66 E-value=1.9e-16 Score=146.63 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=123.0
Q ss_pred HHHHHhhhc-----ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc
Q 018729 194 TTIIAGALE-----LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR 268 (351)
Q Consensus 194 ~~~i~~vl~-----l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~ 268 (351)
..||++++. -+=.+|.|+|+|..+..++..+++++ +..+...++|||||||+++. ..++|+|+.||+....+
T Consensus 171 AtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~- 247 (432)
T COG4109 171 ATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP- 247 (432)
T ss_pred HHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC-
Confidence 456665554 33468999999999999999999998 99999999999999999876 79999999999987543
Q ss_pred ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCCCCC
Q 018729 269 DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQ 336 (351)
Q Consensus 269 ~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~~~~ 336 (351)
+.++..+|.+.|.+|.+.+++..+-+.|-..+..|.||+|++..++|+||+.|+++.++.-..+++.
T Consensus 248 -~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qpqv 314 (432)
T COG4109 248 -STTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQPQV 314 (432)
T ss_pred -CccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCCcc
Confidence 4688899889999999999999999999999999999999999999999999999999876666644
No 12
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.62 E-value=1.1e-14 Score=132.01 Aligned_cols=157 Identities=13% Similarity=0.176 Sum_probs=128.0
Q ss_pred cccHHHHHHHHHhcccccccCCCCCHHHHHHHHh-------hhcccccccccccccCcceEEEeCCCCccHHHHHHHHhc
Q 018729 166 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAG-------ALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM 238 (351)
Q Consensus 166 ~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~-------vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~ 238 (351)
.++.+|+...+.. -.|--.++.++-+-+-+ .-.+.+.++.|||++ ++++++.+++++ ++.+.+.++
T Consensus 202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 3678888887763 23344566655333222 223578899999987 899999999998 999999999
Q ss_pred CCcEEeeEcCCCCceeEEeEhhhhcccccc---------ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEe
Q 018729 239 GHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309 (351)
Q Consensus 239 ~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---------~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvD 309 (351)
+...+||.|++ .+++|+|..+|+++.... .+.+++.+|..++.++.++++..+++..|...+.|..+|+|
T Consensus 275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld 353 (382)
T COG3448 275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD 353 (382)
T ss_pred Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence 99999999876 899999999999873211 13567888666889999999999999999999999999999
Q ss_pred cCCCcccccchhhhhccccCC
Q 018729 310 DLNEKKEGELFKDNCKKPRGQ 330 (351)
Q Consensus 310 e~g~~~GiVT~~Dil~~l~~~ 330 (351)
+.|+++|+||..|++.++..+
T Consensus 354 ~~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 354 AAGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred CCCcEEEEeeHHHHHHHHHHH
Confidence 999999999999999876544
No 13
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.59 E-value=1.5e-15 Score=135.36 Aligned_cols=128 Identities=16% Similarity=0.248 Sum_probs=115.9
Q ss_pred HHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--ccccc
Q 018729 197 IAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLR 274 (351)
Q Consensus 197 i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--~~~l~ 274 (351)
+..+....+.+|+++|++ ++.++++++|+. |+.+.+.+++....||.++ |+++|+++..|+..+..++ +..++
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~ 237 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS 237 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence 345556778999999987 779999999998 9999999999999999975 5999999999998876654 46789
Q ss_pred ccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729 275 KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG 329 (351)
Q Consensus 275 ~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~ 329 (351)
++|.+.++++.+++.+.|+++.|.+++....+|+|.+|+.+|++|+.|++..+.+
T Consensus 238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999998865
No 14
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.57 E-value=1.6e-14 Score=145.13 Aligned_cols=150 Identities=18% Similarity=0.214 Sum_probs=128.0
Q ss_pred ccccHHHHHHHHHhcccccccCCCCC-----HHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcC
Q 018729 165 VLLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 239 (351)
Q Consensus 165 ~~~t~eEl~~lv~~~~~e~~~~g~l~-----~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~ 239 (351)
..+|++|+...+.. .+..|.|+ ++++++++++.++ +++|.+ ++.++++++++. ++++.+.+++
T Consensus 50 ~~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~~-----~dim~~--~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKRS-----ESGVVT--DPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhhh-----hhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence 45799999999873 44567787 5888999988875 457754 668899999998 9999999999
Q ss_pred CcEEeeEcCCCCceeEEeEhhhhcccccccccccccccc-ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCccccc
Q 018729 240 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGE 318 (351)
Q Consensus 240 ~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~-~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiV 318 (351)
++++||++++ ++++|+++.+|+.... ....++.++|. ++++++++++++.++++.|.+++.+.++|+|++|+++|+|
T Consensus 118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiI 195 (486)
T PRK05567 118 ISGVPVVDEN-GKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195 (486)
T ss_pred CCEEEEEccC-CEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence 9999999865 8999999999986542 23356888865 6889999999999999999999999999999999999999
Q ss_pred chhhhhcccc
Q 018729 319 LFKDNCKKPR 328 (351)
Q Consensus 319 T~~Dil~~l~ 328 (351)
|..|+++.+.
T Consensus 196 T~~DLl~~~~ 205 (486)
T PRK05567 196 TVKDIEKAEE 205 (486)
T ss_pred EhHHhhhhhh
Confidence 9999998764
No 15
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=1.2e-13 Score=109.87 Aligned_cols=107 Identities=13% Similarity=0.199 Sum_probs=93.5
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~ 296 (351)
++.++++++++. ++++.+.+++++++||.+++ ++++|+++.+|++....++..++.+++.+++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 456789999998 99999999999999999875 8999999999997654333345777766888999999999999999
Q ss_pred HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
|++.+.+.++|+|++|++.|++|..|+.+
T Consensus 81 ~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 81 MERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 99999999999999999999999999864
No 16
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=2e-13 Score=110.77 Aligned_cols=107 Identities=16% Similarity=0.174 Sum_probs=88.9
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc-----ccccc------cccccCceeC
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-----VPLRK------MIIRRIPRVS 285 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~-----~~l~~------i~~~~~~~V~ 285 (351)
++.++++++++. ++.+.+.+++++++||++++ ++++|+++.+|++....++. .++.+ .+..++.+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 567899999998 99999999999999999874 89999999999986432211 11222 1224567899
Q ss_pred CCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 286 EDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 286 ~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+++++.++++.|.+++.+.++|+|++|+++|++|..|+++
T Consensus 80 ~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 9999999999999999999999999999999999999875
No 17
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1.7e-13 Score=109.18 Aligned_cols=106 Identities=12% Similarity=0.157 Sum_probs=91.6
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc-----cccccccccccCceeCCCCCHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLY 291 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~-----~~~l~~i~~~~~~~V~~~~~l~ 291 (351)
++.+++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++...... ..++.+++.+++.+++++.++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD 79 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence 456789999998 99999999999999999876 7999999999998643221 2367777667888999999999
Q ss_pred HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++++.|.+.+.+.++|+|+ |+++|++|..|+++
T Consensus 80 ~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 80 EAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 9999999999989999988 99999999999875
No 18
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=2.8e-13 Score=108.52 Aligned_cols=107 Identities=17% Similarity=0.291 Sum_probs=93.0
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--cccccccccccCceeCCCCCHHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL 294 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--~~~l~~i~~~~~~~V~~~~~l~~lL 294 (351)
++.+++.++++. ++.+.+.+++++++||.+++ ++++|+++.+|+.....+. +.++.++|..++..+++++++.+++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence 357789999998 99999999999999999865 7999999999987643221 2467888777888999999999999
Q ss_pred HHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 295 NEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 295 ~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+.|.+++.+..+|+|++|+++|++|..|+++
T Consensus 80 ~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 80 RIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 9999999999999998899999999999875
No 19
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=2.2e-13 Score=108.31 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=93.5
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~ 296 (351)
++.+++.+++++ ++.+.+.+++++++||++++ ++++|+++.+|++... .+.++.+++.+++.+++++.++.++++.
T Consensus 3 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~~ 78 (108)
T cd04596 3 DTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTSVASVAHM 78 (108)
T ss_pred ccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCCHHHHHHH
Confidence 567899999998 99999999999999999865 8999999999997642 2346888766788899999999999999
Q ss_pred HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
|++++.+.++|+|++|+++|++|..|+++
T Consensus 79 ~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 79 MIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999999999999875
No 20
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=2e-13 Score=108.96 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=92.0
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc---cccccccccccCceeCCCCCHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDI 293 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~---~~~l~~i~~~~~~~V~~~~~l~~l 293 (351)
++..++.+++++ ++++.+.+++++++||++++ ++++|+++.+|++...... +.++.+++.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 456789999998 89999999999999999875 7999999999988643321 246777767788899999999999
Q ss_pred HHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 294 LNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 294 L~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++.|++++.+.++|+|+ |+++|++|..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 99999999999999998 99999999999875
No 21
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=2.4e-13 Score=109.21 Aligned_cols=107 Identities=19% Similarity=0.206 Sum_probs=91.9
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----ccccccccccccCceeCCCCCHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 291 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----~~~~l~~i~~~~~~~V~~~~~l~ 291 (351)
++.+++.++++. ++++.+.+++++.+||++++.++++|+++.+|+++...+ ...++.+++.++++++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK 80 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence 567899999998 999999999999999998643799999999998763211 12457777667888999999999
Q ss_pred HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++++.|.+++.+.++|+|+ |+++|++|..|++.
T Consensus 81 ~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 81 YCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred HHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 9999999999999999998 99999999999875
No 22
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=3.2e-13 Score=109.77 Aligned_cols=107 Identities=15% Similarity=0.240 Sum_probs=92.9
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--------------cccccccccccCc
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP 282 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--------------~~~l~~i~~~~~~ 282 (351)
++.+++.++++. ++.+.+.+++++++||++++ ++++|+++.+|++...... +.++.+++.+++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 567889999998 99999999999999999876 8999999999987543221 2256777667888
Q ss_pred eeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 283 RVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 283 ~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++++++++.++++.|++++.+..+|+|++|+++|++|..|++.
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 9999999999999999999999999999999999999999875
No 23
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.44 E-value=4.7e-13 Score=106.65 Aligned_cols=109 Identities=36% Similarity=0.534 Sum_probs=93.2
Q ss_pred cceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc--ccccccccccCceeCCCCCHHHH
Q 018729 216 SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPRVSEDMPLYDI 293 (351)
Q Consensus 216 ~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~--~~l~~i~~~~~~~V~~~~~l~~l 293 (351)
+++..++.++++. ++.+.+.+.+++.+||.+++.++++|+++.+|++....++. .++.++ .+++.+++++.++.++
T Consensus 1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~ 78 (111)
T cd04590 1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDL 78 (111)
T ss_pred CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHH
Confidence 3678899999998 99999999999999999864378999999999987543221 245565 5788899999999999
Q ss_pred HHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729 294 LNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (351)
Q Consensus 294 L~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~ 326 (351)
++.|.+++.+.++|+|++|+++|++|..|++++
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~~ 111 (111)
T cd04590 79 LEEMRKERSHMAIVVDEYGGTAGLVTLEDILEE 111 (111)
T ss_pred HHHHHhcCCcEEEEEECCCCEEEEeEHHHhhcC
Confidence 999999999999999999999999999998763
No 24
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=6.3e-13 Score=104.65 Aligned_cols=95 Identities=14% Similarity=0.203 Sum_probs=85.2
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~ 296 (351)
+++++++++++. ++.+.+.+++++.+||++++.++++|+++.+|+.+... +.++++++++.++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence 578899999998 99999999999999999864478999999999875321 6789999999999999
Q ss_pred HhhCCceEEEEEecC-CCcccccchhhhhc
Q 018729 297 FQKGHSHIAVVYKDL-NEKKEGELFKDNCK 325 (351)
Q Consensus 297 ~~~~~~~~aiVvDe~-g~~~GiVT~~Dil~ 325 (351)
|.+++.+..+|+|++ |+++|++|..|++.
T Consensus 68 m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 68 LLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 999999999999987 99999999999864
No 25
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=3e-13 Score=110.08 Aligned_cols=108 Identities=15% Similarity=0.196 Sum_probs=92.7
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc---------------cccccccccccC
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------------AVPLRKMIIRRI 281 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~---------------~~~l~~i~~~~~ 281 (351)
++..++.++++. ++++.+.+++++++||++++.++++|+++.+|++....++ ..++.+++.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 456789999998 9999999999999999986447899999999997543221 235667766778
Q ss_pred ceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 282 PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+++++++++.++++.|++.+.+.++|+|++|+++|+||..|+++
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999998899999999999875
No 26
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.43 E-value=5.5e-13 Score=107.16 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=92.3
Q ss_pred eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc----cccccccccccCceeCCCCCHHHH
Q 018729 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYDI 293 (351)
Q Consensus 218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~----~~~l~~i~~~~~~~V~~~~~l~~l 293 (351)
+..+++++++. ++.+.+.+.+++++||++++ ++++|+++.+|++....++ ..++.+++.++++++++++++.++
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (115)
T cd04593 3 PPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA 80 (115)
T ss_pred CcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence 45678999998 99999999999999999875 8999999999988643221 224677777888999999999999
Q ss_pred HHHHhhCCceEEEEEecC--CCcccccchhhhhcc
Q 018729 294 LNEFQKGHSHIAVVYKDL--NEKKEGELFKDNCKK 326 (351)
Q Consensus 294 L~~~~~~~~~~aiVvDe~--g~~~GiVT~~Dil~~ 326 (351)
++.|++++.+.++|+|++ |+++|+||..|++++
T Consensus 81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 999999999999999988 899999999999863
No 27
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=6.8e-13 Score=108.65 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=90.0
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccc----c-------------ccccccc
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV----P-------------LRKMIIR 279 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~----~-------------l~~i~~~ 279 (351)
++.+++.++++. ++++.+.+++++.+||++++ ++++|+++.+|++....++.. + ..+.+.+
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 567899999998 99999999999999999876 899999999998865422111 0 1123456
Q ss_pred cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++.++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 7889999999999999999999999999999999999999999875
No 28
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.42 E-value=7.1e-13 Score=105.41 Aligned_cols=106 Identities=17% Similarity=0.236 Sum_probs=92.0
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--cccccccccccCceeCCCCCHHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL 294 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--~~~l~~i~~~~~~~V~~~~~l~~lL 294 (351)
++..++.++++. ++.+.+.+.+++++||+++ ++++|+++.+|+++...++ ..++.+++.+++.+++++.++.+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence 456789999998 9999999999999999976 7899999999998754322 2457777667888999999999999
Q ss_pred HHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 295 NEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 295 ~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+.|++.+.+..+|+|++|++.|++|..|+++
T Consensus 79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 9999999999999999999999999999875
No 29
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=6e-13 Score=107.83 Aligned_cols=107 Identities=18% Similarity=0.232 Sum_probs=92.4
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-------------ccccccccccccCce
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-------------DAVPLRKMIIRRIPR 283 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-------------~~~~l~~i~~~~~~~ 283 (351)
++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|++..... ...++.+++.+++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence 456789999998 99999999999999999875 899999999998764321 134567776678889
Q ss_pred eCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 284 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 284 V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+++++++.++++.|++.+.+.++|+|++|+++|++|..|+++
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 80 VTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 999999999999999999999999999999999999999875
No 30
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=8.1e-13 Score=106.28 Aligned_cols=107 Identities=15% Similarity=0.143 Sum_probs=93.4
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----ccccccccccccCceeCCCCCHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 291 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----~~~~l~~i~~~~~~~V~~~~~l~ 291 (351)
++..++.++++. ++.+.+.++++..+||.+++ ++++|+++.+|++..... ...++.+++.+++..+++++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH 79 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence 457789999998 99999999999999999876 899999999998754321 13467787778888999999999
Q ss_pred HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++++.|.+++.+..+|+|+.|+++|++|..|+++
T Consensus 80 ~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 80 DVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 9999999999999999999899999999999875
No 31
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=5.9e-13 Score=106.07 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=92.4
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--ccccccccccccCceeCCCCCHHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL 294 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--~~~~l~~i~~~~~~~V~~~~~l~~lL 294 (351)
++.+++.+++++ ++.+.+.+.+++++||++++ ++++|+++.+|+...... .+.++.+++.+++++++++.++.+++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 79 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL 79 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence 456789999998 99999988999999999875 789999999998764322 22467787778899999999999999
Q ss_pred HHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 295 NEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 295 ~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+.|++++.+.++|+|++|+++|++|..|+.+
T Consensus 80 ~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 80 RLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 9999999999999998899999999999865
No 32
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=9.2e-13 Score=105.10 Aligned_cols=107 Identities=14% Similarity=0.225 Sum_probs=92.4
Q ss_pred eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc---cccccccccccCceeCCCCCHHHHH
Q 018729 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDIL 294 (351)
Q Consensus 218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~---~~~l~~i~~~~~~~V~~~~~l~~lL 294 (351)
+..++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|++....++ +.++.+++.++++.+++++++.+++
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 80 (112)
T cd04624 3 VVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAA 80 (112)
T ss_pred CeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHHH
Confidence 45789999998 99999999999999999876 8999999999987653221 2467777678888999999999999
Q ss_pred HHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729 295 NEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (351)
Q Consensus 295 ~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~ 326 (351)
+.|.+++.+.++|+|++|++.|++|..|++++
T Consensus 81 ~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~~ 112 (112)
T cd04624 81 KLMRKNNIRHHLVVDKGGELVGVISIRDLVRE 112 (112)
T ss_pred HHHHHcCccEEEEEcCCCcEEEEEEHHHhccC
Confidence 99999989999999999999999999999763
No 33
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.41 E-value=9.4e-13 Score=104.64 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=92.2
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---ccccccccccccCceeCCCCCHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDI 293 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---~~~~l~~i~~~~~~~V~~~~~l~~l 293 (351)
++.+++.++++. ++++.+.+.+++.+||+++ ++++|+++.+|+++.... ...++.+++.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence 456789999998 9999999999999999976 799999999998865422 2346777767788899999999999
Q ss_pred HHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 294 LNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 294 L~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++.|++.+.+.++|+|++|++.|++|..|+++
T Consensus 79 l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 79 RQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 99999999999999999999999999999875
No 34
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.40 E-value=4.4e-13 Score=127.98 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=103.4
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---ccccccccccccC
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRI 281 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---~~~~l~~i~~~~~ 281 (351)
..+|+++|.+..++.++++++++. ++.+.+.+++.+.+||++++ ++++|+++.+|+.+.... .+.++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 467999997743478999999998 99999999999999999876 899999999997653321 2346788877888
Q ss_pred ceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729 282 PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (351)
Q Consensus 282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~ 326 (351)
.+++++.++.++++.|.+++...++|+|++|+++|+||..|++++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 899999999999999999999999999999999999999999864
No 35
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.40 E-value=9.1e-13 Score=105.12 Aligned_cols=107 Identities=15% Similarity=0.196 Sum_probs=92.9
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc----cccccccccccCceeCCCCCHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 292 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~----~~~l~~i~~~~~~~V~~~~~l~~ 292 (351)
++.+++++++++ ++++.+.+.+++++||++++ ++++|+++.+|+.....+. ..++.+++.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 79 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence 456789999998 99999999999999999876 7899999999997643221 14677877788999999999999
Q ss_pred HHHHHhhCCceEEEEEec-CCCcccccchhhhhc
Q 018729 293 ILNEFQKGHSHIAVVYKD-LNEKKEGELFKDNCK 325 (351)
Q Consensus 293 lL~~~~~~~~~~aiVvDe-~g~~~GiVT~~Dil~ 325 (351)
+++.|++.+.+.++|+|+ +|+++|++|..|+++
T Consensus 80 ~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 80 ALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 999999999999999998 899999999999875
No 36
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.40 E-value=5.8e-13 Score=110.74 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=107.1
Q ss_pred cCCCCCHHH---HHHHHhhhccc--ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEh
Q 018729 185 KGGDLTHDE---TTIIAGALELT--EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILV 259 (351)
Q Consensus 185 ~~g~l~~~e---~~~i~~vl~l~--~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~ 259 (351)
|.|.+++.= +++++...+-+ ..+++.+|+. +++.+.+++++. ++.++|.++|||.+||.++ |.++|-++-
T Consensus 39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE 113 (187)
T COG3620 39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE 113 (187)
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence 457777643 33343333333 4689999964 889999999998 9999999999999999986 799999999
Q ss_pred hhhccccccc-----cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729 260 KNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG 329 (351)
Q Consensus 260 kdll~~~~~~-----~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~ 329 (351)
.|+.+...++ ...++++|-.+.+.|.++.++..+-..+..+ +..+|+ |+|+++|+||..|+++.+.|
T Consensus 114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence 9987765332 3567888888889999999998777766544 334454 88999999999999998765
No 37
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.40 E-value=6.7e-13 Score=127.02 Aligned_cols=120 Identities=18% Similarity=0.080 Sum_probs=102.6
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIR 279 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~ 279 (351)
...+|+++|++..++.++++++++. ++++.+.++++..+||.+++ ++++|+++.+|+.+.... .+.++.++|.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 5678999998755778999999998 99999998888888888765 899999999998754322 13568898778
Q ss_pred cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (351)
Q Consensus 280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~ 326 (351)
++.++++++++.++++.|.+++.+..+|+| .|+++|+||..|+++.
T Consensus 278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 278 GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 889999999999999999999999999987 4899999999999864
No 38
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=1.3e-12 Score=104.84 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=89.0
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc---------cccccccccccCceeCCC
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------AVPLRKMIIRRIPRVSED 287 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~---------~~~l~~i~~~~~~~V~~~ 287 (351)
++++++.++++. ++++.+.+++++++||++++ ++++|+++.+|+++...+. +.++.+++.+++..++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 79 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence 567899999998 99999999999999999865 7899999999997654321 245677766678899999
Q ss_pred CCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 288 MPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 288 ~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+++.++++.|.+.+ ..+|+|++|+++|++|..|+++
T Consensus 80 ~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 80 ADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 99999999998754 5788999999999999999875
No 39
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=1.1e-12 Score=105.16 Aligned_cols=107 Identities=12% Similarity=0.125 Sum_probs=89.1
Q ss_pred ceEEEeCCCCccHHHHHHHHhcC-CcEEeeEcCCCCceeEEeEhhhhccccccc--ccccccccc--ccCceeCCCCCHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMII--RRIPRVSEDMPLY 291 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~-~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--~~~l~~i~~--~~~~~V~~~~~l~ 291 (351)
++.+++.++++. ++.+.+.+++ ++++||++++ ++++|+++.+|++....+. +.++.+++. .+++.+++++++.
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence 456789999998 9999887665 8999999865 8999999999988754321 346777642 2356899999999
Q ss_pred HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++++.|++++.+.++|+|++|+++|++|..|+++
T Consensus 80 ~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 80 EVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 9999999999999999999899999999999875
No 40
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.39 E-value=1.3e-12 Score=103.86 Aligned_cols=106 Identities=17% Similarity=0.193 Sum_probs=91.3
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc---ccccccccccCceeCCCCCHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA---VPLRKMIIRRIPRVSEDMPLYDI 293 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~---~~l~~i~~~~~~~V~~~~~l~~l 293 (351)
++..++.++++. ++.+.+.+.+++++||+++ ++++|+++.+|++.....+. .++.+++.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence 456789999998 9999999999999999986 89999999999986443221 14556667888999999999999
Q ss_pred HHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 294 LNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 294 L~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++.|++++.+.++|+|++|+++|++|..|+++
T Consensus 79 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 79 LKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 99999999999999998899999999999875
No 41
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.39 E-value=1.8e-12 Score=102.62 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=92.4
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~ 296 (351)
++..+++++++. ++++.+.+++++++||++++ ++++|+++.+|++.... ...++.+++.+.+.++++++++.+++..
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence 456789999998 99999999999999999875 79999999999876432 2346777767788899999999999999
Q ss_pred HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
|++.+.+.++|+|++|+++|++|.+|+++
T Consensus 80 ~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 80 VLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 99999999999999999999999999875
No 42
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=1.7e-12 Score=103.74 Aligned_cols=105 Identities=12% Similarity=0.160 Sum_probs=90.9
Q ss_pred EEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccccCceeCCCCCHHHHH
Q 018729 219 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYDIL 294 (351)
Q Consensus 219 ~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~~~~~V~~~~~l~~lL 294 (351)
..++.++++. ++++.+.+++++++||++++ ++.+|+++.+|++....+ .+.++.+++..++.++++++++.+++
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 4 SCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred EEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 6689999998 99999999999999999875 889999999999763221 13467777667888999999999999
Q ss_pred HHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 295 NEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 295 ~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+.|++++.+..+|+|++|+++|++|..|+++
T Consensus 82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 9999999988999999999999999999875
No 43
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1.5e-12 Score=105.50 Aligned_cols=107 Identities=12% Similarity=0.175 Sum_probs=91.6
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc-------------cccccccccccccCce
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR 283 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~-------------~~~~~l~~i~~~~~~~ 283 (351)
++.+++.++++. ++++.+.+++++.+||++++ ++++|+++.+|++.... ....++.+++.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence 567889999998 99999999999999999865 89999999999875310 0123566666677889
Q ss_pred eCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 284 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 284 V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+++++++.++++.|++.+.+.++|+|++|++.|++|..|+++
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 80 VTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 999999999999999999999999999999999999999876
No 44
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=2.3e-12 Score=101.84 Aligned_cols=104 Identities=16% Similarity=0.251 Sum_probs=90.9
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~ 296 (351)
++.+++.+.+++ ++++.+.+.+++++||+++ ++++|+++.+|++... ...++.+++..++.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD--PDETVEEIMSKDLVVAVPEMDIMDAARV 77 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC--ccccHHHhCCCCCeEECCCCCHHHHHHH
Confidence 567889999998 9999998889999999974 7999999999998642 2345778766778889999999999999
Q ss_pred HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
|++++.+.++|+|++|+++|++|..|+++
T Consensus 78 ~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 78 MFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999999999875
No 45
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1.7e-12 Score=105.72 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=87.3
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--cc-----------cccccccccCce
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AV-----------PLRKMIIRRIPR 283 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--~~-----------~l~~i~~~~~~~ 283 (351)
++..++.++++. ++++.+.+++++++||++++.++++|+++.+|+++...++ .. ...+++.+++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 456789999998 9999999999999999986437899999999987643211 00 011234567789
Q ss_pred eCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhh
Q 018729 284 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDN 323 (351)
Q Consensus 284 V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Di 323 (351)
++++.++.++++.|.+++.+.++|+|++|+++|+||..|+
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence 9999999999999999999999999999999999999996
No 46
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.37 E-value=2.5e-12 Score=101.97 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=90.0
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCC-CCCHHHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE-DMPLYDILN 295 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~-~~~l~~lL~ 295 (351)
+...++.+.++. ++.+.+.+++++++||++++ ++++|+++.+|++.... .+.++.+++..++.++.. ++++.++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence 456789999998 99999999999999999876 89999999999875432 335677775555666666 999999999
Q ss_pred HHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 296 EFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 296 ~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
.|++.+.+.++|+|++|+++|+||.+|+++
T Consensus 80 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 80 LLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 999999999999999999999999999875
No 47
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.6e-12 Score=107.37 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=90.8
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc----c--------------------cc
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----A--------------------VP 272 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~----~--------------------~~ 272 (351)
++.+++.++++. ++++.+.+.+++++||++++ ++++|+++.+|++...... . .+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 456789999998 99999999999999999875 8999999999987643221 1 15
Q ss_pred ccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 273 l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+.+++.++++++++++++.++++.|.+.+.+.++|+|+ |+++|++|..|+++
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 66776677889999999999999999999999999998 99999999999875
No 48
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=3e-12 Score=102.52 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=90.5
Q ss_pred eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---ccccccccccccCceeCCCCCHHHHH
Q 018729 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDIL 294 (351)
Q Consensus 218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---~~~~l~~i~~~~~~~V~~~~~l~~lL 294 (351)
.++++.++++. ++++.+.+.++..+||++++ ++++|+++.+|++....+ .+.++.+++..++..+++++++.+++
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL 81 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence 36789999998 99999998999999999875 899999999998753321 12457777656678899999999999
Q ss_pred HHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 295 NEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 295 ~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+.|.+++.+.++|+|++|+++|++|.+|++.
T Consensus 82 ~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 82 ALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 9999999999999999999999999999874
No 49
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.36 E-value=3.6e-12 Score=100.61 Aligned_cols=104 Identities=11% Similarity=0.005 Sum_probs=89.6
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~ 296 (351)
++..++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++.... .++.+++.+++..+++++++.++++.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence 456789999998 99999999999999999865 89999999999986432 24667655566779999999999999
Q ss_pred HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
|.+++.+.++|+|++|+++|++|..|++.
T Consensus 77 ~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 77 MFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999874
No 50
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.36 E-value=2.4e-12 Score=103.84 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=91.3
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--------------cccccccccccCc
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP 282 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--------------~~~l~~i~~~~~~ 282 (351)
++.+++.+.++. ++++.+.+.+++.+||+++ ++++|+++.+|++...... +.++.+++.+++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence 456789999998 9999999999999999986 7999999999988653211 1346666667788
Q ss_pred eeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 283 RVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 283 ~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++++++++.+++..|++.+.+.++|+|++|+++|+||..|+++
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 79 TVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 9999999999999999999999999999999999999999875
No 51
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.36 E-value=6.3e-12 Score=123.70 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCC-----cEEeeEcCCCCceeEEeEhhhh
Q 018729 188 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGH-----SRVPVYSGNPTNIIGLILVKNL 262 (351)
Q Consensus 188 ~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~-----sr~PV~~~~~d~ivGiv~~kdl 262 (351)
.++++|++.++..+.+.+.+++.+|++ +.++++.+.|++ +++..+++.+. ..+.|.|.+ ++++|++..+++
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L 189 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL 189 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence 378899999999999999999999987 889999999998 99999986543 334455654 689999999999
Q ss_pred ccccccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCC---------CC
Q 018729 263 LSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP---------EK 333 (351)
Q Consensus 263 l~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~---------~~ 333 (351)
+...+ +..+.++|.+.+.+|+.++..+++-+.|++++.-.++|||++|+++|++|.+|+++.+..+. ..
T Consensus 190 l~a~~--~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~eDi~~~~G~~ 267 (451)
T COG2239 190 LTAEP--DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATEDILRMAGPL 267 (451)
T ss_pred hcCCc--HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHHHHHHhcCCC
Confidence 87543 45788988788899999999999999999999999999999999999999999997654332 23
Q ss_pred CCCcccchhHHHHhh
Q 018729 334 SSQKGEMDAATFILN 348 (351)
Q Consensus 334 ~~~~~~~~~~~~~~~ 348 (351)
+..+.+.+.++..+|
T Consensus 268 ~~~~~~~~v~~~~k~ 282 (451)
T COG2239 268 DVPDLFASVLKLVKK 282 (451)
T ss_pred CCchhccCHHHHHhh
Confidence 445666666665554
No 52
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=2.6e-12 Score=107.00 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=91.2
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc---------------------------
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------------------- 269 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--------------------------- 269 (351)
++.+++.++++. ++++.+.+.+++++||++++ ++++|+++.+|++......
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 456789999998 99999999999999999875 8999999999998643211
Q ss_pred cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 270 ~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+.++.+++..++.++++++++.++++.|.+++.+.++|+|+ |+++|++|..|+++
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 23577776667889999999999999999999999999988 99999999999876
No 53
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.35 E-value=1.2e-12 Score=134.36 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=104.8
Q ss_pred ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----cccccccccc
Q 018729 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII 278 (351)
Q Consensus 203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~ 278 (351)
++..+|+|+|+| +...++++++++ |+.+.+.+++++.+||.|++ ++++|+++.+|+.+...+ ++.++.+++.
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 567889999976 457789999998 99999999999999999875 799999999998763211 1246778877
Q ss_pred ccCceeCCCCCHHHHHHHHhhCCceEEEEEecC--CCcccccchhhhhccccC
Q 018729 279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL--NEKKEGELFKDNCKKPRG 329 (351)
Q Consensus 279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~--g~~~GiVT~~Dil~~l~~ 329 (351)
+++..+++++++.++++.|++++.+..+|+|++ |+++|+||++|+++.+..
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 788899999999999999999999999999987 479999999999987643
No 54
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=4.7e-12 Score=99.06 Aligned_cols=94 Identities=9% Similarity=0.104 Sum_probs=84.4
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~ 296 (351)
++.+++.++++. ++++.+.+.+++.+||.+++ ++++|+++.+|+.... .+.+++++.++.++++.
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~-------------~~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS-------------EVVTATKRTTVSECAQK 66 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC-------------CcEEecCCCCHHHHHHH
Confidence 467889999998 99999999999999999865 8999999999987632 16789999999999999
Q ss_pred HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
|++++.+.++|+|+.|+++|++|..|+++
T Consensus 67 m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 67 MKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred HHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999998899999999999875
No 55
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.8e-12 Score=103.66 Aligned_cols=106 Identities=17% Similarity=0.237 Sum_probs=90.5
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc------ccccccccccccCceeCCCCCH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR------DAVPLRKMIIRRIPRVSEDMPL 290 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~------~~~~l~~i~~~~~~~V~~~~~l 290 (351)
++..++.++++. ++.+.+.+++++++||++++ ++++|+++.+|+++...+ ...++.+++.+++.++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 79 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI 79 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence 346789999998 99999998899999999865 789999999998763221 2346777766778899999999
Q ss_pred HHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 291 YDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 291 ~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
.++++.|.+++.+.++|+|+ |+++|++|..|+++
T Consensus 80 ~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 80 VDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred HHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 99999999999988999998 99999999999875
No 56
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.35 E-value=3.3e-12 Score=101.71 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=90.4
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc-c---ccccccccccccCceeCCCCCHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R---DAVPLRKMIIRRIPRVSEDMPLYD 292 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~-~---~~~~l~~i~~~~~~~V~~~~~l~~ 292 (351)
++.+++.++++. ++.+.+.+.+++++||.++ ++++|+++.+|++.... . .+.++.+++.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence 457789999998 9999999999999999975 89999999999875321 1 124577776788899999999999
Q ss_pred HHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 293 ILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 293 lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+++.|++.+.+.++|+|+ |+++|++|.+|+++
T Consensus 79 ~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 79 ALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 999999999999999998 99999999999875
No 57
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=4.4e-12 Score=99.84 Aligned_cols=103 Identities=9% Similarity=0.103 Sum_probs=89.9
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~ 296 (351)
++..++.++++. ++++.+.+++++++||.+ + ++++|+++.+|++.... +.++.+++..++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence 456789999998 999999999999999997 4 79999999999986432 345777766788899999999999999
Q ss_pred HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
|.+++...++|+|+ |+++|++|..|++.
T Consensus 77 ~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 77 MEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred HHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 99999999999998 99999999999874
No 58
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=3.3e-12 Score=101.64 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=87.6
Q ss_pred EeCCCCccHHHHHHHHhcCC-----cEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHH
Q 018729 221 LDLDATLTLDTLNAIMTMGH-----SRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILN 295 (351)
Q Consensus 221 v~~~~t~~~e~~~~~~~~~~-----sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~ 295 (351)
+++++++. ++++.+.++++ ..+||++++ ++++|+++.+|++... .+.++.+++..++..+++++++.++++
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~ 77 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence 56788998 89999988773 678999765 8999999999998642 234677876567889999999999999
Q ss_pred HHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729 296 EFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP 327 (351)
Q Consensus 296 ~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l 327 (351)
.|++.+.+.++|+|++|+++|++|..|+++.+
T Consensus 78 ~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 78 LFEKYDLLALPVVDEEGRLVGIITVDDVIDVI 109 (109)
T ss_pred HHHHcCCceeeeECCCCcEEEEEEhHHhhhhC
Confidence 99999999999999999999999999998753
No 59
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.34 E-value=5.5e-12 Score=99.69 Aligned_cols=100 Identities=14% Similarity=0.165 Sum_probs=87.3
Q ss_pred EEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHHHh
Q 018729 219 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQ 298 (351)
Q Consensus 219 ~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~ 298 (351)
.+++.++++. ++++.+.+.+++++||+++ ++++|+++.+|++.... .++.+++..++.+++++.++.++++.|+
T Consensus 4 ~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~ 77 (104)
T cd04594 4 IKVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMM 77 (104)
T ss_pred eEECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHH
Confidence 3578999998 9999999999999999985 89999999999986422 2466666677889999999999999999
Q ss_pred hCCceEEEEEecCCCcccccchhhhhc
Q 018729 299 KGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 299 ~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+++.+.++|+|+ |+++|++|.+|+++
T Consensus 78 ~~~~~~~~Vv~~-~~~iGvit~~dl~~ 103 (104)
T cd04594 78 KNKTRWCPVVDD-GKFKGIVTLDSILD 103 (104)
T ss_pred HcCcceEEEEEC-CEEEEEEEHHHhhc
Confidence 999999999984 99999999999875
No 60
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=4.1e-12 Score=101.10 Aligned_cols=105 Identities=15% Similarity=0.231 Sum_probs=91.0
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--ccccccccccccCceeCCCCCHHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL 294 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--~~~~l~~i~~~~~~~V~~~~~l~~lL 294 (351)
++.+++.+.++. ++.+.+.+.+++++||+++ ++++|+++.+|+...... ...++.+++.+++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 456789999998 9999999899999999986 789999999998754321 23567787778888999999999999
Q ss_pred HHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 295 NEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 295 ~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+.|++++.+.++|+| +|+++|++|..|+++
T Consensus 80 ~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 80 ELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 999999999999998 799999999999875
No 61
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=2.6e-12 Score=106.44 Aligned_cols=106 Identities=13% Similarity=0.194 Sum_probs=90.9
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc--------------------------ccc
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY--------------------------RDA 270 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~--------------------------~~~ 270 (351)
++.+++.++++. ++++.+.++++.++||++++ ++++|+++.+|++.... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 567889999998 99999999999999999865 89999999999875321 112
Q ss_pred ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 271 ~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
.++.+++..+++.+++++++.++++.|++.+.+..+|+| +|+++|++|..|+++
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 456677667788999999999999999999999999999 899999999999875
No 62
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=4.8e-12 Score=102.36 Aligned_cols=107 Identities=12% Similarity=0.184 Sum_probs=90.0
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccc--cCceeCCCCCH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIR--RIPRVSEDMPL 290 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~--~~~~V~~~~~l 290 (351)
+..+++.++++. ++++.+.+++.+.+||.+++ ++++|+++.+|+...... ...++.++|.+ +++++++++++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence 456789999998 99999999999999999865 789999999998765421 12345666543 67899999999
Q ss_pred HHHHHHHhhCCceEEEEEecC---CCcccccchhhhhc
Q 018729 291 YDILNEFQKGHSHIAVVYKDL---NEKKEGELFKDNCK 325 (351)
Q Consensus 291 ~~lL~~~~~~~~~~aiVvDe~---g~~~GiVT~~Dil~ 325 (351)
.++++.|.+++.+..+|+|+. |+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 999999999999999999987 69999999999865
No 63
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=6.7e-12 Score=99.25 Aligned_cols=104 Identities=21% Similarity=0.212 Sum_probs=89.8
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~ 296 (351)
++++++.++++. ++++.+.+.+++++||++++ ++++|+++.++++.... +.++.+++.+++.++++++++.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL 77 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence 567889999998 89999999999999999876 89999999999875422 235666666778899999999999999
Q ss_pred HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
|++++.+.++|+|+ |+++|++|.+|+++
T Consensus 78 ~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 78 MVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred HHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 99999999999985 89999999999875
No 64
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.33 E-value=3.8e-12 Score=101.57 Aligned_cols=106 Identities=12% Similarity=0.120 Sum_probs=89.9
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc-c---cc-ccccccccccCceeCCCCCHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R---DA-VPLRKMIIRRIPRVSEDMPLY 291 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~-~---~~-~~l~~i~~~~~~~V~~~~~l~ 291 (351)
++.+++.+++++ ++.+.+.+++++++||.++ ++++|+++.+|++.... . .. .++.+++.+++.+++++.++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~ 78 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL 78 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence 456789999998 8999999899999999975 89999999999874221 1 11 467777667788899999999
Q ss_pred HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++++.|.+++.+..+|+|++|+++|++|..|++.
T Consensus 79 ~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 79 EALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 9999999999988899999899999999999875
No 65
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=5e-12 Score=103.58 Aligned_cols=107 Identities=17% Similarity=0.242 Sum_probs=89.7
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----------------ccccccccccc
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----------------DAVPLRKMIIR 279 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----------------~~~~l~~i~~~ 279 (351)
++..++.++++. ++++.+.+.+++.+||++++ ++++|+++.+|+...... .+.++.+++.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 456789999998 99999999999999999876 899999999998743210 12356777668
Q ss_pred cCceeCCCCCHHHHHHHHhhCCceEEEEEe--cCCCcccccchhhhhc
Q 018729 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYK--DLNEKKEGELFKDNCK 325 (351)
Q Consensus 280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvD--e~g~~~GiVT~~Dil~ 325 (351)
+++++++++++.++++.|.+++.+.++|++ +.|+++|+||..|+++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 889999999999999999999888888873 5699999999999875
No 66
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.33 E-value=4e-12 Score=101.51 Aligned_cols=107 Identities=14% Similarity=0.138 Sum_probs=91.2
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccccCceeCCCCCHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYD 292 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~~~~~V~~~~~l~~ 292 (351)
++.+++.++++. ++.+.+.+++++++||++++ ++++|+++.++++....+ ...++.+++.+++.++++++++.+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 445678999998 89999988899999999875 799999999988754322 123577876677889999999999
Q ss_pred HHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 293 ILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 293 lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+++.|.+++.+.++|+|++|+++|++|..|+++
T Consensus 81 ~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 81 ALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 999999999999999998899999999999875
No 67
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.33 E-value=3.7e-12 Score=127.00 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=105.7
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCce
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR 283 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~ 283 (351)
+..+++++|++ +++++++++++. ++.+.+.+++++.+||++++ ++++|+|+.+|+.... ...++.++|.+++.+
T Consensus 87 ~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~--~~~~V~diMt~~~it 160 (479)
T PRK07807 87 AWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVD--RFTQVRDVMSTDLVT 160 (479)
T ss_pred hhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCc--cCCCHHHhccCCceE
Confidence 35567899965 668899999998 99999999999999999865 7899999999986532 235688988888999
Q ss_pred eCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729 284 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ 330 (351)
Q Consensus 284 V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~ 330 (351)
+++++++.++++.|.+++.+..+|+|++|+++|+||..|+++.....
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999865543
No 68
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=3.7e-12 Score=103.27 Aligned_cols=106 Identities=14% Similarity=0.142 Sum_probs=91.0
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--------------ccccccccccccCc
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP 282 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--------------~~~~l~~i~~~~~~ 282 (351)
++..++.++++. ++.+.+.+.+++++||+++ ++++|+++.+|+...... ...++.+++.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 467789999998 9999999999999999985 799999999998753211 12356677677888
Q ss_pred eeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 283 RVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 283 ~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++++++++.++++.|++++.+.++|+|++|+++|++|..|+++
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 79 TVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred eeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 9999999999999999999999999999999999999999875
No 69
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=6e-12 Score=100.96 Aligned_cols=105 Identities=12% Similarity=0.238 Sum_probs=87.2
Q ss_pred eEEEeCCCCccHHHHHHHHhcC-CcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccccCceeCCC--CCH
Q 018729 218 AFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSED--MPL 290 (351)
Q Consensus 218 v~~v~~~~t~~~e~~~~~~~~~-~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~~~~~V~~~--~~l 290 (351)
+..++.+.++. ++++.+.+++ +..+||.+ + ++++|+++.+|++....+ .+.++.+++.+++++++++ .++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l 79 (115)
T cd04620 3 PLTVTPDTPVA-DAIALMSQQGDSSCVLVVE-K-GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDI 79 (115)
T ss_pred CeEeCCCCcHH-HHHHHHHhcCCCceEEEcC-C-CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccCH
Confidence 45688999998 9999998888 67778876 3 789999999998864322 1246777766777888887 689
Q ss_pred HHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 291 YDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 291 ~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
.++++.|.+++.+.++|+|++|+++|++|.+|+++
T Consensus 80 ~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 80 FTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred HHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 99999999999999999999999999999999875
No 70
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=5.3e-12 Score=103.41 Aligned_cols=106 Identities=15% Similarity=0.252 Sum_probs=85.5
Q ss_pred eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc----------ccccccccccccccCce--e-
Q 018729 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD----------YRDAVPLRKMIIRRIPR--V- 284 (351)
Q Consensus 218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~----------~~~~~~l~~i~~~~~~~--V- 284 (351)
+.+++.++++. ++++.+.++++..+||.+++ ++++|+++.+|+.... ...+.++.++|.+++.. +
T Consensus 3 ~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~ 80 (126)
T cd04640 3 PIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALD 80 (126)
T ss_pred CeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhcccc
Confidence 46789999998 99999988999999999865 7999999999987521 11234577775433322 2
Q ss_pred ---CCCCCHHHHHHHHhhCCceEEEEEecC-CCcccccchhhhhc
Q 018729 285 ---SEDMPLYDILNEFQKGHSHIAVVYKDL-NEKKEGELFKDNCK 325 (351)
Q Consensus 285 ---~~~~~l~~lL~~~~~~~~~~aiVvDe~-g~~~GiVT~~Dil~ 325 (351)
++++++.++++.|.+++.+.++|+|+. |+++|+||..|+++
T Consensus 81 ~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 81 LEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 368899999999999999999999986 89999999999875
No 71
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=9e-12 Score=99.36 Aligned_cols=106 Identities=12% Similarity=0.179 Sum_probs=90.4
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc-ccc----ccccccccccccCceeCCCCCHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV-DYR----DAVPLRKMIIRRIPRVSEDMPLY 291 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~-~~~----~~~~l~~i~~~~~~~V~~~~~l~ 291 (351)
++.+++.++++. ++.+.+.+++++.+||+++ ++++|+++.+|++.. ..+ ...++.+++.+.+..+++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD 78 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence 457789999998 9999999999999999976 899999999998632 111 11237777667888999999999
Q ss_pred HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++++.|++.+.+.++|+|++|+++|++|..|+++
T Consensus 79 ~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 79 EAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 9999999999999999998899999999999875
No 72
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.31 E-value=7.1e-12 Score=99.88 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=89.2
Q ss_pred eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccccCceeCCCCCHHHH
Q 018729 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYDI 293 (351)
Q Consensus 218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~~~~~V~~~~~l~~l 293 (351)
...++.+.++. ++++.+.+.+++.+||+++ ++++|+++.+|++....+ ...++.+++.++.+.+++++++.++
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04589 3 PLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNA 79 (111)
T ss_pred CEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHH
Confidence 46788999998 9999999999999999986 689999999998764321 2346777766778899999999999
Q ss_pred HHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 294 LNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 294 L~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++.|++++.+.++|+|+ |+++|++|..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 80 LLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 99999999999999986 99999999999875
No 73
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.31 E-value=5.7e-12 Score=100.22 Aligned_cols=101 Identities=21% Similarity=0.110 Sum_probs=87.5
Q ss_pred cceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCC--CCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHH
Q 018729 216 SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDI 293 (351)
Q Consensus 216 ~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~l 293 (351)
++...++++++++ ++.+.+.+.+++++||+++. .++++|+++.+|+.....+ +|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~ 73 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence 4677899999998 99999999999999999862 3789999999998754321 556778899999999999
Q ss_pred HHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 294 LNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 294 L~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++.|++++.+.++|++ +|+++|+||.+|+++
T Consensus 74 ~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 74 HQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred HHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 9999999999999985 699999999999875
No 74
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.31 E-value=6.6e-12 Score=100.83 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=89.0
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCC--CCceeEEeEhhhhccccccccccccccccccCceeCC--CCCHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE--DMPLYD 292 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~--~~~l~~ 292 (351)
++.+++.++++. ++++.+.+++++++||+++. .++++|+++.+|++.... ...++.+++.+++..+.. ++++.+
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~ 80 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence 456788999998 99999998999999999862 378999999999875322 234577776555666644 999999
Q ss_pred HHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 293 ILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 293 lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+++.|++++.+..+|+|++|+++|+||.+|+++
T Consensus 81 ~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 81 ANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999999999999999999875
No 75
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.31 E-value=2.9e-12 Score=105.08 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=90.6
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc----cccccccccccccCceeCCCCCHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RDAVPLRKMIIRRIPRVSEDMPLYD 292 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~----~~~~~l~~i~~~~~~~V~~~~~l~~ 292 (351)
++.++++++++. ++++.+.+++++.+||++++ ++++|+++.+|++.... ..+.++.++|.+++..++++.++.+
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence 557889999998 99999999999999999875 78999999999885321 2346789998889999999999999
Q ss_pred HHHHHh---------hCCceEEEEEecCCCcccccchhhhhcc
Q 018729 293 ILNEFQ---------KGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (351)
Q Consensus 293 lL~~~~---------~~~~~~aiVvDe~g~~~GiVT~~Dil~~ 326 (351)
+.+.+. +.+.+..+|+|++|+++|+||..|+++.
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred HHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 998543 3356677788989999999999999875
No 76
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.30 E-value=7.7e-12 Score=101.01 Aligned_cols=106 Identities=10% Similarity=0.126 Sum_probs=90.4
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc-------------cccccccccccccCce
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR 283 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~-------------~~~~~l~~i~~~~~~~ 283 (351)
++.+++.++++. ++.+.+.+++++++||++++ ++++|+++.+|+..... ....++.+++..++.+
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT 79 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence 456789999998 99999999999999999876 89999999999875321 1124566776678889
Q ss_pred eCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 284 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 284 V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+++++++.++++.|++++.+.++|+|+ |+++|++|..|+++
T Consensus 80 i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 80 VHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 999999999999999999999999987 99999999999876
No 77
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.28 E-value=1.1e-11 Score=98.09 Aligned_cols=104 Identities=21% Similarity=0.302 Sum_probs=86.5
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc----cccccccccccCceeCCCCCHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 292 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~----~~~l~~i~~~~~~~V~~~~~l~~ 292 (351)
++.+++.++++. ++.+.+.+++++++||+++ ++++|+++.+|+.+...+. ..++.+++.+++..+++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 78 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE 78 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence 356789999998 9999999999999999985 7999999999988753221 24566776677888999999999
Q ss_pred HHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 293 ILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 293 lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+++.|++ ..+ ++|+|++|+++|++|.+|+++
T Consensus 79 ~~~~~~~-~~~-~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 79 LSELLDR-GNV-AVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHHHh-CCc-eeEEecCCeEEEEEeHHHhhc
Confidence 9999988 444 678899999999999999874
No 78
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.27 E-value=7.2e-12 Score=125.19 Aligned_cols=118 Identities=18% Similarity=0.255 Sum_probs=98.5
Q ss_pred ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----cccccccccc
Q 018729 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII 278 (351)
Q Consensus 203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~ 278 (351)
++..+++++|.+ ++.++++++++. ++++.+.+++++.+||++++ ++++|+|+.+|++....+ .+.++.++|.
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~ 407 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMS 407 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcC
Confidence 678999999976 678899999998 99999999999999999865 789999999998764321 1246778876
Q ss_pred ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729 279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP 327 (351)
Q Consensus 279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l 327 (351)
+++.++++++++.++++.|++++ ..+ |+++|+++|+||+.|+++.+
T Consensus 408 ~~~~~v~~~~~l~~a~~~~~~~~--~~v-V~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 408 KKFIQIGEGEKLSDLSKFLEKNS--SAI-VTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CCCeEECCcCcHHHHHHHHHHCC--eeE-EEECCEEEEEEEHHHHHHhh
Confidence 77789999999999999998764 344 45579999999999998865
No 79
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=1.1e-11 Score=100.11 Aligned_cols=105 Identities=14% Similarity=0.230 Sum_probs=89.8
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--------------ccccccccccccCc
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP 282 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--------------~~~~l~~i~~~~~~ 282 (351)
++..++.++++. ++.+.+.+.+++++||+++ ++++|+++.+|++..... ...++.+++.+++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence 456789999998 9999999999999999985 899999999998754221 12356666667888
Q ss_pred eeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 283 RVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 283 ~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+++++.++.++++.|++.+.+.++|+|+ |+++|++|..|+++
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 79 TIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 9999999999999999999999999998 99999999999875
No 80
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=1.8e-11 Score=97.51 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=88.8
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----ccccccccccccCceeCCCCCHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 291 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----~~~~l~~i~~~~~~~V~~~~~l~ 291 (351)
++..+++++++. ++++.+.+++++.+||.++ ++++|+++.+|++..... ...++.+++.+++.++++++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence 456789999998 9999999999999999985 489999999998864211 23457777666788899999999
Q ss_pred HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++++.|.+++.+.++|+|++ +++|++|..|+++
T Consensus 79 ~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 99999999999889999975 8999999999875
No 81
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.26 E-value=2.1e-11 Score=122.45 Aligned_cols=155 Identities=9% Similarity=0.057 Sum_probs=117.4
Q ss_pred cccHHHHHHHHHhcccccc-cCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEe
Q 018729 166 LLRRAELKTFVNFHGNEAG-KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244 (351)
Q Consensus 166 ~~t~eEl~~lv~~~~~e~~-~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~P 244 (351)
.+|+.++-..+...|--+- -.+.=.++.++.++.+.+++ ..|++ +++++++++++. ++++.+.+++++.+|
T Consensus 64 ~vt~~~lA~Ama~aGGiGfI~~~as~E~q~~~Irkvk~~~-----~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lp 135 (505)
T PLN02274 64 TVTESDMAIAMAALGGIGIVHYNNTAEEQAAIVRKAKSRR-----VGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVC 135 (505)
T ss_pred ccchHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHhhccc-----ccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEE
Confidence 4567776665542110000 00111345567788888543 22654 668899999998 999999999999999
Q ss_pred eEcCC--CCceeEEeEhhhhcccccccccccccccccc--CceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccch
Q 018729 245 VYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRR--IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 320 (351)
Q Consensus 245 V~~~~--~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~--~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~ 320 (351)
|++++ .++++|+|+.+|+.... ..+.++.++|.++ +++++++.++.++++.|++++.+.++|+|+.|+++|+||+
T Consensus 136 VvD~~~~~GklvGIVT~~DL~~v~-~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr 214 (505)
T PLN02274 136 VTETGTMGSKLLGYVTKRDWDFVN-DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTR 214 (505)
T ss_pred EEeCCCcCCeEEEEEEHHHHhhcc-ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEH
Confidence 99863 36899999999986532 3346788886545 6699999999999999999999999999999999999999
Q ss_pred hhhhccccC
Q 018729 321 KDNCKKPRG 329 (351)
Q Consensus 321 ~Dil~~l~~ 329 (351)
+|+++.+..
T Consensus 215 ~DIlk~~~~ 223 (505)
T PLN02274 215 TDVKRVKGY 223 (505)
T ss_pred HHHHHHhhC
Confidence 999988764
No 82
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.26 E-value=2.3e-11 Score=95.69 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=91.3
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc-c---cccccccccCceeCCCCCHHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-V---PLRKMIIRRIPRVSEDMPLYD 292 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~-~---~l~~i~~~~~~~V~~~~~l~~ 292 (351)
++..++.+.++. ++.+.+.+++++++||++++ ++++|+++.+|++....... . .+.+++..++.+++++.++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence 456788999998 99999999999999999876 89999999999986543221 1 144566678889999999999
Q ss_pred HHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 293 ILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 293 lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++..|++.+.+.++|+|++|+++|+++..|+++
T Consensus 80 ~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 80 AAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 999999999999999999999999999999875
No 83
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.26 E-value=2.4e-11 Score=121.99 Aligned_cols=150 Identities=11% Similarity=0.157 Sum_probs=116.3
Q ss_pred cccHHHHHHHHHhcccccccCCCC-----CHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCC
Q 018729 166 LLRRAELKTFVNFHGNEAGKGGDL-----THDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGH 240 (351)
Q Consensus 166 ~~t~eEl~~lv~~~~~e~~~~g~l-----~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~ 240 (351)
.+|+.++-..+...|. -|.+ -+++.+.++.+-+++ +.|++ +.+++++++++. ++++.+.++++
T Consensus 60 ~vt~~~ma~a~a~~Gg----lGvi~~~~~~e~~~~~v~kvk~~e-----~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~ 127 (495)
T PTZ00314 60 TVTEHKMAIAMALMGG----IGVIHNNCSIEEQVEEVRKVKRFE-----NGFIM--DPYVLSPNHTVA-DVLEIKEKKGF 127 (495)
T ss_pred ccccHHHHHHHHHCCC----eEEecCCCCHHHHHHHHhhccccc-----ccccc--CCeecCCCCCHH-HHHHHHHHcCC
Confidence 4567776665543211 1222 234566777776544 46654 447899999998 99999999999
Q ss_pred cEEeeEcCC--CCceeEEeEhhhhccccccccccccccccc--cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCccc
Q 018729 241 SRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKE 316 (351)
Q Consensus 241 sr~PV~~~~--~d~ivGiv~~kdll~~~~~~~~~l~~i~~~--~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~G 316 (351)
+.+||.+++ .++++|+++.+|+.... ..+.++.++|.+ ++.+++++.++.++++.|++++.+..+|+|++|+++|
T Consensus 128 s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liG 206 (495)
T PTZ00314 128 SSILITVDGKVGGKLLGIVTSRDIDFVK-DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVA 206 (495)
T ss_pred cEEEEEeCCccCCeEEEEEEHHHHhhcc-cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence 999999863 36899999999987432 234578888654 6788999999999999999999999999999999999
Q ss_pred ccchhhhhcccc
Q 018729 317 GELFKDNCKKPR 328 (351)
Q Consensus 317 iVT~~Dil~~l~ 328 (351)
+||++|+++...
T Consensus 207 IIT~~DIl~~~~ 218 (495)
T PTZ00314 207 LVSRSDLKKNRG 218 (495)
T ss_pred EEEehHhhhccc
Confidence 999999998754
No 84
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=3.3e-11 Score=97.09 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=86.6
Q ss_pred eEEEeCCCCccHHHHHHHHhcC-CcEEeeEcCCCCceeEEeEhhhhcccccc-------ccccccccccccCceeCCCCC
Q 018729 218 AFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYR-------DAVPLRKMIIRRIPRVSEDMP 289 (351)
Q Consensus 218 v~~v~~~~t~~~e~~~~~~~~~-~sr~PV~~~~~d~ivGiv~~kdll~~~~~-------~~~~l~~i~~~~~~~V~~~~~ 289 (351)
+.+++.++++. ++.+.+.+.+ ++++||.++ ++++|+++.+|++..... .+.++.++|..++..++++++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~ 79 (119)
T cd04598 3 APTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTP 79 (119)
T ss_pred cCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCC
Confidence 45678999998 9999998877 899999986 899999999998753221 234677876677889999999
Q ss_pred HHHHHHHHhhCCc---eEEEEEecCCCcccccchhhhhc
Q 018729 290 LYDILNEFQKGHS---HIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 290 l~~lL~~~~~~~~---~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
+.+++..|.+++. .-.+|+|++|+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 80 LEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999988874 23467888999999999999875
No 85
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=3.2e-11 Score=101.29 Aligned_cols=105 Identities=15% Similarity=0.224 Sum_probs=89.2
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----------------------------
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------------------------- 268 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---------------------------- 268 (351)
++++++.++++. ++.+.+.+++++.+||+++ ++++|+++.+|++.....
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 457889999998 9999999999999999985 799999999998753211
Q ss_pred --------ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 269 --------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 269 --------~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
...++.+++.+++..+++++++.+++..|++.+.+.++|+|+ |+++|++|..|+++
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 123455666678889999999999999999999988999988 99999999999875
No 86
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.21 E-value=5.7e-11 Score=119.24 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=103.8
Q ss_pred HHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCC--CCceeEEeEhhhhcccccc
Q 018729 191 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYR 268 (351)
Q Consensus 191 ~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~d~ivGiv~~kdll~~~~~ 268 (351)
+++.+++..+-++. .+.++.| .++++++++. ++++.+.+++++.+||++++ .++++|+|+.+|+......
T Consensus 87 e~qa~lV~kVk~~~---~g~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~ 158 (502)
T PRK07107 87 ESEAAMVRRVKNYK---AGFVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMS 158 (502)
T ss_pred HHHHHHHHHHHHHh---cCCcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccC
Confidence 56666665555543 2223333 4789999998 99999999999999999862 4799999999998643222
Q ss_pred ccccccccccc--cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729 269 DAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP 327 (351)
Q Consensus 269 ~~~~l~~i~~~--~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l 327 (351)
.+.++.++|.+ ++.+++++.++.++++.|++++....+|+|++|+++|+||.+|+++..
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 34678898654 567899999999999999999999999999999999999999999864
No 87
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=4.9e-11 Score=95.02 Aligned_cols=105 Identities=12% Similarity=0.168 Sum_probs=87.9
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----ccccccccccccCceeCCCCCHH
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 291 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----~~~~l~~i~~~~~~~V~~~~~l~ 291 (351)
++..++.++++. ++++.+.+++++.+||.+ + ++++|+++.+|++..... ...++.+++..++..+++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID 78 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence 567889999998 899999888888888774 4 799999999998864321 12467787666678899999999
Q ss_pred HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
++++.|.+++.+..+|+|+ |+++|++|..|+++
T Consensus 79 ~a~~~m~~~~~~~l~Vv~~-~~~~Gvvt~~dl~~ 111 (112)
T cd04625 79 EVRRLMVERHLRYLPVLDG-GTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHHHHcCCCeeeEEEC-CEEEEEEEHHHhhc
Confidence 9999999999998999985 99999999999875
No 88
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.18 E-value=4.7e-11 Score=110.95 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=96.2
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---ccccccccccccCc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIP 282 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---~~~~l~~i~~~~~~ 282 (351)
.+|+++|.+. ++..+++++++. ++++.+.+.+++.+||.+++ ++++|+++.+|+...... .+.++.++|.+++.
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 6899999764 267899999998 99999999999999999875 899999999998764321 23568888778888
Q ss_pred eeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccc
Q 018729 283 RVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGEL 319 (351)
Q Consensus 283 ~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT 319 (351)
.+++++++.++++.|.+.+.+..+|+|+.|+++|+|+
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 9999999999999999999999999999999999874
No 89
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.17 E-value=1.1e-10 Score=116.49 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=103.0
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCcee
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV 284 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V 284 (351)
..+++++|++ +.+++++++++. ++++.+.+++++.+||.++ ++++|+|+.+|+.... ...++.++|.+++.++
T Consensus 87 ~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~--~~~~V~dIMt~~litv 159 (475)
T TIGR01303 87 FVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVD--RFTQVRDIMSTDLVTA 159 (475)
T ss_pred hcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCC--CCCCHHHHccCCceEe
Confidence 5567788976 457899999998 9999999999999999874 6899999999986542 2356889888889999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729 285 SEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ 330 (351)
Q Consensus 285 ~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~ 330 (351)
+++.++.++++.|.+++.+.++|+|++|+++|+||..|+++.....
T Consensus 160 ~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 160 PADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999865443
No 90
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.03 E-value=1.4e-09 Score=87.01 Aligned_cols=111 Identities=22% Similarity=0.293 Sum_probs=94.6
Q ss_pred ccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc-c--cccccccccCceeC
Q 018729 209 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-V--PLRKMIIRRIPRVS 285 (351)
Q Consensus 209 ~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~-~--~l~~i~~~~~~~V~ 285 (351)
+++|. .++.++.++.++. ++...+.+++++++||.++ ++++|+++.+|+......+. . ++.++|.+++..+.
T Consensus 2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~ 76 (117)
T COG0517 2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVD 76 (117)
T ss_pred ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEEC
Confidence 34554 4678899999998 9999999999999999975 37999999999988764332 1 47777666888999
Q ss_pred CCCCHHHHHHHHhh-CCceEEEEEecCC-Ccccccchhhhh
Q 018729 286 EDMPLYDILNEFQK-GHSHIAVVYKDLN-EKKEGELFKDNC 324 (351)
Q Consensus 286 ~~~~l~~lL~~~~~-~~~~~aiVvDe~g-~~~GiVT~~Dil 324 (351)
++.++.++++.|.+ ++.+..+|+|+.+ +++|++|..|++
T Consensus 77 ~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 77 PDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred CCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 99999999999999 6999999999986 999999999974
No 91
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.86 E-value=7.7e-09 Score=86.07 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=76.9
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccc---c------------ccccc----
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---P------------LRKMI---- 277 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~---~------------l~~i~---- 277 (351)
++..+++++++. ++++.+.+++++.+||++++ ++++|+++.+|++........ . +.+++
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 567899999998 99999999999999999875 899999999998865432110 1 12232
Q ss_pred -----cccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCC
Q 018729 278 -----IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNE 313 (351)
Q Consensus 278 -----~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~ 313 (351)
.+++.++++++++.++++.|.+++.+.++|+|+.+.
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~ 120 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVD 120 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcC
Confidence 256788999999999999999999999999987553
No 92
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.86 E-value=9.6e-09 Score=105.14 Aligned_cols=120 Identities=15% Similarity=0.165 Sum_probs=99.7
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----------------
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------------- 268 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---------------- 268 (351)
..+|+++|++ ++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|+.....+
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 3679999975 678899999998 99999999999999999876 899999999998652100
Q ss_pred ---------------------------------------------c----------------------------------
Q 018729 269 ---------------------------------------------D---------------------------------- 269 (351)
Q Consensus 269 ---------------------------------------------~---------------------------------- 269 (351)
+
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence 0
Q ss_pred ----------------------ccccccccc-ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729 270 ----------------------AVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (351)
Q Consensus 270 ----------------------~~~l~~i~~-~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~ 326 (351)
..++.++|. +++.++++++++.++.+.|.+++.+..+|+|++|+++|++|..|+++.
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~ 302 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSP 302 (546)
T ss_pred hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcc
Confidence 012334444 578899999999999999999999999999999999999999999975
Q ss_pred cc
Q 018729 327 PR 328 (351)
Q Consensus 327 l~ 328 (351)
..
T Consensus 303 ~~ 304 (546)
T PRK14869 303 VR 304 (546)
T ss_pred cc
Confidence 43
No 93
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.81 E-value=4.3e-09 Score=103.76 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=103.9
Q ss_pred ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc----ccccccccccc
Q 018729 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RDAVPLRKMII 278 (351)
Q Consensus 203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~----~~~~~l~~i~~ 278 (351)
|--.+++++|+. ..+++++..++. ++.+.+.+.|.|.+-+.+++ +...||++.+|+....- ..+.++.++|.
T Consensus 146 ~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT 221 (610)
T COG2905 146 FILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT 221 (610)
T ss_pred HHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence 344568888876 447899999998 99999999999988888765 89999999999876432 23568999988
Q ss_pred ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729 279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR 328 (351)
Q Consensus 279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~ 328 (351)
.|++.|..+..+.+++-.|.+++.+..+|. |+|+++|++|..||+....
T Consensus 222 ~p~~svd~~~~~feAml~m~r~~I~hl~V~-e~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 222 SPVISVDRGDFLFEAMLMMLRNRIKHLPVT-EDGQPLGILTLTDILRLFS 270 (610)
T ss_pred cCceeecCcchHHHHHHHHHHhCCceeeee-cCCeeeEEeeHHHHHHhhC
Confidence 999999999999999999999999999887 5699999999999998765
No 94
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.66 E-value=2.5e-08 Score=69.93 Aligned_cols=55 Identities=29% Similarity=0.496 Sum_probs=50.2
Q ss_pred cccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729 208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (351)
Q Consensus 208 v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~ 266 (351)
|+++|+| ++.++++++++. ++.+.+.+++++++||++++ ++++|+++.+|++...
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhh
Confidence 5789987 779999999998 99999999999999999876 9999999999998653
No 95
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.63 E-value=1.5e-08 Score=71.12 Aligned_cols=55 Identities=16% Similarity=-0.047 Sum_probs=50.6
Q ss_pred cccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729 274 RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR 328 (351)
Q Consensus 274 ~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~ 328 (351)
+++|.++++++++++++.++++.|++++.+.++|+|++|+++|++|..|+++.+.
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 4566778999999999999999999999999999999999999999999998753
No 96
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=2.9e-07 Score=90.40 Aligned_cols=122 Identities=11% Similarity=0.029 Sum_probs=96.3
Q ss_pred cccccccccCcc-eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCcee
Q 018729 206 KTAKDAMTPISK-AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV 284 (351)
Q Consensus 206 ~~v~~iMtpr~~-v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V 284 (351)
.++.++|.+... .+....+.+.. ++++.+.+.+.++..|++++ +++.|+++.+++.....+ ..++.+.+......|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 350 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV 350 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence 567788854221 12334556776 89999999999999999876 899999999998754332 235666555667899
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCC
Q 018729 285 SEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP 331 (351)
Q Consensus 285 ~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~ 331 (351)
++++++.+++..+.+...+ .+|+|+.|+++|+||..++++.+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~~ 396 (400)
T PRK10070 351 DAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDREG 396 (400)
T ss_pred CCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhcC
Confidence 9999999999999988777 778899999999999999999886543
No 97
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.40 E-value=7.6e-07 Score=86.77 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=93.4
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc-----cc-cccc------ccccCcee
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-----VP-LRKM------IIRRIPRV 284 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~-----~~-l~~i------~~~~~~~V 284 (351)
.+..+..+.++. ++++.|.+.+.|.+||++.+ ++.+|.....|+.....++. .. +.+. -..+++.+
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 588999999997 99999999999999999986 67799999999876543321 11 2211 11235779
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCC
Q 018729 285 SEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP 331 (351)
Q Consensus 285 ~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~ 331 (351)
.++.++.+++..|..++.|-+.|||++|.++|+||..|++..+....
T Consensus 316 ~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p 362 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTP 362 (381)
T ss_pred eecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999998876553
No 98
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.38 E-value=1.4e-06 Score=84.51 Aligned_cols=106 Identities=11% Similarity=0.064 Sum_probs=88.1
Q ss_pred EEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHHHhh
Q 018729 220 SLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQK 299 (351)
Q Consensus 220 ~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~ 299 (351)
....+.+.. ++++.+...+.+...|++++ ++..|++..+++....... ..+.+.+......+++++++.+++..|.+
T Consensus 254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (363)
T TIGR01186 254 TKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-QGLQDVLIDDIYTVDAGTLLRETVRKVLK 330 (363)
T ss_pred eecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-CchhhhhccCCceECCCCcHHHHHHHHHh
Confidence 445566776 88999998899999999876 7999999999987654332 34666556667889999999999999999
Q ss_pred CCceEEEEEecCCCcccccchhhhhccccC
Q 018729 300 GHSHIAVVYKDLNEKKEGELFKDNCKKPRG 329 (351)
Q Consensus 300 ~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~ 329 (351)
++.+ .+|+|+.|+++|+||..++++.+.+
T Consensus 331 ~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 331 AGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred CCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 9999 8888999999999999999998755
No 99
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.37 E-value=2.7e-07 Score=91.97 Aligned_cols=120 Identities=21% Similarity=0.205 Sum_probs=95.7
Q ss_pred ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCC----ceeEEeEhhhhccccc------c----
Q 018729 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT----NIIGLILVKNLLSVDY------R---- 268 (351)
Q Consensus 203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d----~ivGiv~~kdll~~~~------~---- 268 (351)
+++.+|+|+|.+ ++++++.-..+. .+.+.+..+.|..|||+|+..+ .+.|++-.+.++.... +
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 356789999977 899999999998 8999999999999999986543 5778876666542110 0
Q ss_pred ----------------c----------------cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCccc
Q 018729 269 ----------------D----------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKE 316 (351)
Q Consensus 269 ----------------~----------------~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~G 316 (351)
. -.++.++|-..|++||+++++..++..|++-+....+||+..++.+|
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~g 735 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVG 735 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeE
Confidence 0 02234444455889999999999999999999988899988889999
Q ss_pred ccchhhhhc
Q 018729 317 GELFKDNCK 325 (351)
Q Consensus 317 iVT~~Dil~ 325 (351)
++|++|+..
T Consensus 736 ilTR~D~~~ 744 (762)
T KOG0474|consen 736 ILTRKDLAR 744 (762)
T ss_pred EEehhhhhh
Confidence 999999984
No 100
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.29 E-value=1.3e-06 Score=83.20 Aligned_cols=153 Identities=12% Similarity=0.126 Sum_probs=117.2
Q ss_pred ccccHHHHHHHHHhcccccccCCC-CCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEE
Q 018729 165 VLLRRAELKTFVNFHGNEAGKGGD-LTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRV 243 (351)
Q Consensus 165 ~~~t~eEl~~lv~~~~~e~~~~g~-l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~ 243 (351)
..+|+.|......+.+--+-=... =.+++..+++.+-.|..- -++-| +.+.++.++. ++++....++++.+
T Consensus 71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g---~~~~p----~v~sp~~tvg-~v~~~k~~~gF~g~ 142 (503)
T KOG2550|consen 71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENG---FINNP----IVISPTTTVG-EVKEAKEKHGFSGI 142 (503)
T ss_pred cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhcc---cccCC----cccCCcccch-hhhhhccccccccc
Confidence 356777776655543211000001 145778889888887753 33333 5678899998 99999999999999
Q ss_pred eeEcCC--CCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchh
Q 018729 244 PVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFK 321 (351)
Q Consensus 244 PV~~~~--~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~ 321 (351)
||.++. ..+++|+|+.+|+-.. .++...+.++|...+++.|...++.++=+.+++++..-.+|||+.|+++-++++.
T Consensus 143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rt 221 (503)
T KOG2550|consen 143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRT 221 (503)
T ss_pred ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehh
Confidence 999643 3689999999997544 4445778888777779999999999999999999999999999999999999999
Q ss_pred hhhcc
Q 018729 322 DNCKK 326 (351)
Q Consensus 322 Dil~~ 326 (351)
|+.+.
T Consensus 222 Dl~k~ 226 (503)
T KOG2550|consen 222 DLMKN 226 (503)
T ss_pred hhhhh
Confidence 99875
No 101
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.86 E-value=2.5e-05 Score=62.10 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=49.2
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.++.++|.+ ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 3568899964 567899999998 99999999999999999876 78999999999875
No 102
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.85 E-value=3.4e-05 Score=61.01 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=51.3
Q ss_pred hcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 201 LELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 201 l~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+..+.++.++|.+ ++.+++.++++. ++++.+.+++.+++||++++ ++++|+++.+|++.
T Consensus 54 ~~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 54 LDILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred CccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 34455679999976 457899999998 99999999999999999865 89999999999875
No 103
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.76 E-value=4e-05 Score=60.91 Aligned_cols=58 Identities=26% Similarity=0.409 Sum_probs=50.6
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.++.++|.|..++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence 467899998755567899999998 99999999999999999864 78999999999864
No 104
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.73 E-value=6.5e-05 Score=60.32 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=48.6
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+++++|.+ ++..++.++++. ++++.+.++++..+||++++ ++++|+++.+|+..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 679999976 567899999998 99999999999999999875 78999999999853
No 105
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.70 E-value=2.2e-05 Score=80.53 Aligned_cols=118 Identities=12% Similarity=-0.003 Sum_probs=86.9
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---------------c
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------------D 269 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---------------~ 269 (351)
..+|+++|+ +.++.+++++++++ ++.+.+.+++++++||++++ ++++|+++.+|++..... +
T Consensus 245 ~~~V~~iM~-~~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~ 321 (546)
T PRK14869 245 SIPVSYIMT-TEDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEG 321 (546)
T ss_pred CCCHHHhcc-CCCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCccccccccc
Confidence 578999997 24678899999998 99999999999999999876 899999999999864321 0
Q ss_pred --c---------ccccccccccCcee---CCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729 270 --A---------VPLRKMIIRRIPRV---SEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (351)
Q Consensus 270 --~---------~~l~~i~~~~~~~V---~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~ 326 (351)
+ .++.+++.+.|..+ |...+...+.+.|++.+.....++.. ..+.|++|-.+.++.
T Consensus 322 ~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~-~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 322 IEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG-LLLAAILSDTLLFKS 391 (546)
T ss_pred hhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHHhcCccC
Confidence 0 12333333344433 33455667778888888887777654 467899998888763
No 106
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.70 E-value=7.2e-05 Score=75.14 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=87.9
Q ss_pred ccccccccCc---ceEEEeCC-CCccHHHHHHHHhcCCcEEeeEc-CCCCceeEEeEhhhhcccccc----c--------
Q 018729 207 TAKDAMTPIS---KAFSLDLD-ATLTLDTLNAIMTMGHSRVPVYS-GNPTNIIGLILVKNLLSVDYR----D-------- 269 (351)
Q Consensus 207 ~v~~iMtpr~---~v~~v~~~-~t~~~e~~~~~~~~~~sr~PV~~-~~~d~ivGiv~~kdll~~~~~----~-------- 269 (351)
-..++|.|+. ....++.+ .+++ |....+.++.|+.+||+- ++....+|++..+|+...... +
T Consensus 544 ~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~ 622 (696)
T KOG0475|consen 544 LAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI 622 (696)
T ss_pred hhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc
Confidence 3455665543 34555554 7887 889999999999999874 455789999999998643210 0
Q ss_pred ---------------cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729 270 ---------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (351)
Q Consensus 270 ---------------~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~ 326 (351)
...+++++.-.|..|...+|...+++.|++-+..-..| +++|++.|+||.+|++..
T Consensus 623 ~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v-~~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 623 YFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILV-TKNGILLGIITKKDCLRH 693 (696)
T ss_pred ccCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEE-ccCCeeEeeeehHHHHHh
Confidence 12345554455778999999999999999888777766 789999999999999864
No 107
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.67 E-value=6.8e-05 Score=59.74 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=49.2
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.+++++|.. +..++++++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus 58 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 4678899965 667899999998 99999999999999999865 79999999999864
No 108
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.65 E-value=7.9e-05 Score=59.77 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=50.9
Q ss_pred ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCC--CceeEEeEhhhhcc
Q 018729 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP--TNIIGLILVKNLLS 264 (351)
Q Consensus 203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~--d~ivGiv~~kdll~ 264 (351)
..+.+++++|+.-.++.+++.++++. ++++.+.+++++++||++++. ++++|+++.+|+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 34567888996323577899999998 999999999999999998652 58999999999864
No 109
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.61 E-value=5.8e-05 Score=60.59 Aligned_cols=55 Identities=18% Similarity=0.129 Sum_probs=49.4
Q ss_pred ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729 271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK 325 (351)
Q Consensus 271 ~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~ 325 (351)
.++.++|.+++.++++++++.++++.|++.+....+|+|+.|+++|++|..|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 4577877788889999999999999999999899999999999999999999864
No 110
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.60 E-value=5.7e-05 Score=75.58 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=84.4
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCce
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR 283 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~ 283 (351)
++.+++++|+| ++.++++++++. ++++.+.++++..+||+|++ ++++|+++.+|++....++ ...+++......
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv~ 266 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAVK 266 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCCC
Confidence 55689999976 568899999998 99999999999999999876 7999999999998765432 224543333333
Q ss_pred eCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729 284 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (351)
Q Consensus 284 V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~ 326 (351)
..++..+.+.+..|.+++.+..+|. .+.|++| ..++..
T Consensus 267 ~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~ 304 (449)
T TIGR00400 267 PLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISN 304 (449)
T ss_pred CCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHH
Confidence 3345677888888888888877763 5677777 555543
No 111
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.59 E-value=0.00019 Score=72.50 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=81.8
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccc---cccccccccC
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---PLRKMIIRRI 281 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~---~l~~i~~~~~ 281 (351)
+.+++++|++ .++++++.++++. ++++.+.+++.+.+||++++ ++++|+++.+|++......+. .-..+.....
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa 222 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA 222 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence 4579999973 4678899999998 99999999999999999876 899999999999875421110 0111112222
Q ss_pred ceeCCCCCHHHHHHHHhhCCceEEEEEe-cCCCcccccchhhhhcc
Q 018729 282 PRVSEDMPLYDILNEFQKGHSHIAVVYK-DLNEKKEGELFKDNCKK 326 (351)
Q Consensus 282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvD-e~g~~~GiVT~~Dil~~ 326 (351)
..++++ -.+..+.|.+.+.+.. |+| .+|+..|+++.-+.++.
T Consensus 223 i~~~~~--~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 223 VGVGAD--NEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred cccCcc--hHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence 333331 2677788888888855 556 46888887776665554
No 112
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.59 E-value=0.00022 Score=72.13 Aligned_cols=62 Identities=24% Similarity=0.321 Sum_probs=55.7
Q ss_pred ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (351)
Q Consensus 203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~ 266 (351)
..+.+++++|+|..+++++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++..
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcc
Confidence 45678999999877889999999998 99999999999999999865 7899999999998754
No 113
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.57 E-value=6.3e-05 Score=49.22 Aligned_cols=48 Identities=17% Similarity=0.021 Sum_probs=42.8
Q ss_pred cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP 327 (351)
Q Consensus 280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l 327 (351)
++.+++++.++.++++.|++.+.+.++|+|++|+++|+++..|+.+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 356789999999999999999999999999889999999999987654
No 114
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.55 E-value=0.00011 Score=58.48 Aligned_cols=58 Identities=21% Similarity=0.391 Sum_probs=50.7
Q ss_pred ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
..+.++.++|.+ +..+++.++++. ++++.+.+.+.+++||++++ ++++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence 345678999965 668899999998 99999999999999999865 79999999999875
No 115
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.52 E-value=0.00016 Score=57.31 Aligned_cols=56 Identities=14% Similarity=0.354 Sum_probs=48.8
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.+++++|.+ .+.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence 3568899965 567899999998 99999999999999999865 78999999999864
No 116
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.52 E-value=8.9e-05 Score=60.27 Aligned_cols=60 Identities=25% Similarity=0.364 Sum_probs=48.0
Q ss_pred cccccccccccCcceEEEe----CCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKAFSLD----LDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~----~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+.+++++|.+...+..++ +++++. ++++.|.+++.+++||++++.++++|+++.+|++.
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 4567999997644444443 578887 89999999999999999865358999999999874
No 117
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.51 E-value=0.00016 Score=56.85 Aligned_cols=55 Identities=15% Similarity=0.421 Sum_probs=48.6
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.+++++|.+ ++.+++.++++. ++++.+.+++.+++||+++ ++++|+++.+|+++
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 5678999965 668899999998 9999999999999999975 79999999999875
No 118
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.48 E-value=0.00025 Score=71.21 Aligned_cols=99 Identities=10% Similarity=0.166 Sum_probs=72.9
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccccccccc----ccccC
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKM----IIRRI 281 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i----~~~~~ 281 (351)
..++++|++ ++.++++++++. ++++.+.+++..++||++++ ++++|+|+.+|+++..... +..+. .....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa 221 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA 221 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence 569999986 678999999998 99999999999999999875 7999999999998754322 11111 11111
Q ss_pred ceeCCCCCHHHHHHHHhhCCceEEEEEec-CCC
Q 018729 282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD-LNE 313 (351)
Q Consensus 282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe-~g~ 313 (351)
+.-.....+.+..|.+.+... +++|- +|.
T Consensus 222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~~ 251 (479)
T PRK07807 222 --VGINGDVAAKARALLEAGVDV-LVVDTAHGH 251 (479)
T ss_pred --hccChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence 222334678888888888887 66674 454
No 119
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.48 E-value=0.0002 Score=55.88 Aligned_cols=56 Identities=20% Similarity=0.393 Sum_probs=48.5
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+..++++|.++ ..+++.++++. ++++.+.+++.+++||++++ |+++|+++.+|++.
T Consensus 51 ~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSKD--LVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCCC--CeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 35688999664 57789999998 99999999999999999876 79999999999875
No 120
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.45 E-value=0.00022 Score=55.66 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=41.8
Q ss_pred eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.++++++++. ++++.|.+++..++||.+++.++++|+++.+|++.
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 67899999998 99999999999999999865478999999999875
No 121
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00019 Score=67.27 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=92.9
Q ss_pred HHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccccc
Q 018729 193 ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVP 272 (351)
Q Consensus 193 e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~ 272 (351)
-++.++++-...=.++++||.+......-...+..+ .+++.+...+.+.+-+++ ..++.+|+++..++...
T Consensus 261 V~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~-~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~------- 331 (386)
T COG4175 261 VRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPR-VALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA------- 331 (386)
T ss_pred HHHHHhcCChhheeeHHHhhcccccccccccccccc-hhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc-------
Confidence 456777777777789999998522222222222333 577788877777777776 34679999998776543
Q ss_pred ccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729 273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG 329 (351)
Q Consensus 273 l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~ 329 (351)
.+..++..++.++++.+.+...++...++++| ||.|+++|+++...+++++.+
T Consensus 332 ---~~~~~~~~v~~d~~~~~~~~~~~~~~~p~aVv-de~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ---ALIDDVLTVDADTPLSEILARIRQAPCPVAVV-DEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred ---cccccccccCccchHHHHHHHHhcCCCceeEE-cCCCcEEEEecHHHHHHHHhc
Confidence 23556778999999999999999999999855 999999999999999998765
No 122
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.42 E-value=0.00023 Score=56.07 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=48.4
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.++.++|.+ ...+++.++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 578899965 557899999998 99999999999999999876 78999999999875
No 123
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.42 E-value=0.00034 Score=54.53 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=47.0
Q ss_pred ccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+++++|.+ ...+++.++++. ++++.+.+++.+++||++++ ++++|+++.+|++.
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 47888976 346789999998 99999999999999999875 78999999999864
No 124
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.41 E-value=0.00049 Score=69.10 Aligned_cols=102 Identities=10% Similarity=0.125 Sum_probs=70.0
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccccccccccccc--Cce
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRR--IPR 283 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~--~~~ 283 (351)
.+++++|++ +++++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++..... +..+..-+. ---
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vgaa 219 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGAA 219 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehhe
Confidence 579999986 678899999998 99999999999999999865 7899999999998753321 111110000 001
Q ss_pred eCCCCCHHHHHHHHhhCCceEEEEEe-cCCCc
Q 018729 284 VSEDMPLYDILNEFQKGHSHIAVVYK-DLNEK 314 (351)
Q Consensus 284 V~~~~~l~~lL~~~~~~~~~~aiVvD-e~g~~ 314 (351)
+.-.....+.+..+.+.+... +|+| -+|+-
T Consensus 220 v~~~~~~~~ra~~Lv~aGVd~-i~~D~a~g~~ 250 (475)
T TIGR01303 220 VGINGDVGGKAKALLDAGVDV-LVIDTAHGHQ 250 (475)
T ss_pred eeeCccHHHHHHHHHHhCCCE-EEEeCCCCCc
Confidence 223345567777777777666 3445 34443
No 125
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.40 E-value=0.023 Score=56.24 Aligned_cols=108 Identities=11% Similarity=0.047 Sum_probs=75.0
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---cccc-----ccccc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVP-----LRKMI 277 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---~~~~-----l~~i~ 277 (351)
.+++++|.| +..+++++++. ++++.|++++....+|+|+. |.++|+|+..|++...-. ++.+ +..+
T Consensus 255 ~~l~~~~~~---~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei~de~d~~~~~i~~~- 328 (408)
T TIGR03520 255 FDWQSLLRE---PYFVPENKKLD-DLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI- 328 (408)
T ss_pred CCHHHHcCC---CeEeCCCCcHH-HHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe-
Confidence 457788854 46899999998 99999999999999999875 889999999999875421 1111 1111
Q ss_pred cccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccc
Q 018729 278 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGEL 319 (351)
Q Consensus 278 ~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT 319 (351)
....+.++..+++.++-+.|.-...+.-..-++|..+.|.++
T Consensus 329 ~~~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~ 370 (408)
T TIGR03520 329 DDNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLL 370 (408)
T ss_pred CCCeEEEEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHH
Confidence 233466888999999999885432111112245666667643
No 126
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.40 E-value=0.00035 Score=55.41 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=47.2
Q ss_pred ccccccccccCcceEEEeCC--CCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLD--ATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~--~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.++.++|.+ ++.+++++ +++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 4678899965 56677776 6777 89999999999999999875 89999999999875
No 127
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.39 E-value=0.00038 Score=54.82 Aligned_cols=55 Identities=16% Similarity=0.377 Sum_probs=47.9
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.+++++|.+ ++.+++.++++. ++++.+.+++..++||.++ ++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence 4578999954 567899999998 9999999999999999973 78999999999875
No 128
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.38 E-value=0.00028 Score=55.46 Aligned_cols=56 Identities=18% Similarity=0.397 Sum_probs=49.3
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.+++++|.+ +..+++.++++. ++++.+.+++...+||++++ ++++|+++.+|+++
T Consensus 52 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 5679999965 567899999998 99999999999999999865 79999999999874
No 129
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.37 E-value=0.0003 Score=55.49 Aligned_cols=57 Identities=14% Similarity=0.341 Sum_probs=49.3
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+.++.++|.+ ++.+++.++++. ++++.+.+++.+++||++++ ++++|+++.+|++.
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 45678889965 568899999998 99999999999999999865 79999999999864
No 130
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.37 E-value=0.00028 Score=56.68 Aligned_cols=57 Identities=21% Similarity=0.483 Sum_probs=50.0
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
...+++++|.+ .+.++++++++. ++++.+.+.+.+++||.+++ ++++|+++.+|++.
T Consensus 67 ~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence 45678999965 568899999998 99999999999999999865 89999999999875
No 131
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.37 E-value=0.00032 Score=55.69 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=48.8
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+.+++++|.+ ++.+++.++++. ++++.+.+++..++||+++ ++++|+++..|++.
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 34678899954 678899999998 9999999999999999975 78999999999875
No 132
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.36 E-value=0.00035 Score=55.04 Aligned_cols=55 Identities=18% Similarity=0.339 Sum_probs=48.0
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+++++|.+ +..+++.++++. ++++.+.+++.+++||.+++ ++++|+++.+|+++
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 358899965 567889999998 99999999999999999865 78999999999865
No 133
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.35 E-value=0.00027 Score=54.80 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=44.5
Q ss_pred ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729 279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP 327 (351)
Q Consensus 279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l 327 (351)
++++.+++++++.++++.|.+++...++|+|++|+++|+++..|+....
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~ 49 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS 49 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC
Confidence 4677899999999999999989889999999999999999999998754
No 134
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.33 E-value=0.0004 Score=55.99 Aligned_cols=52 Identities=29% Similarity=0.334 Sum_probs=44.7
Q ss_pred cccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhc
Q 018729 208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL 263 (351)
Q Consensus 208 v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll 263 (351)
+.++|.+ ++.++++++++. ++++.|.+++.+++||++++ ++++|+++..|+-
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 3456754 668899999998 99999999999999999876 7899999999973
No 135
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.32 E-value=0.0008 Score=68.05 Aligned_cols=61 Identities=15% Similarity=0.264 Sum_probs=54.9
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~ 266 (351)
.+.+++++|+|..++++++++.++. ++++.+.+++...+||++++ ++++|+++.+|+++..
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNR 217 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcc
Confidence 3567999999877889999999998 99999999999999999876 7899999999998753
No 136
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.31 E-value=0.00037 Score=68.08 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=92.1
Q ss_pred ccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--c--------cccccc---ccc
Q 018729 213 TPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--A--------VPLRKM---IIR 279 (351)
Q Consensus 213 tpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--~--------~~l~~i---~~~ 279 (351)
+++...+++.+..+.- ++...+.++++.|+||.+.+.+++..+++.+.++...... . .++.++ ...
T Consensus 159 ~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~ 237 (381)
T KOG1764|consen 159 TLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS 237 (381)
T ss_pred ccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence 4444547788888876 7888999999999999985567999999999998754321 1 122222 123
Q ss_pred cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG 329 (351)
Q Consensus 280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~ 329 (351)
....+.+++++.++++.|.+++..-.+|||++|+.+|..+..|+......
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~ 287 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLARE 287 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhc
Confidence 46789999999999999999999999999999999999999999876543
No 137
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.30 E-value=0.00046 Score=54.00 Aligned_cols=56 Identities=23% Similarity=0.421 Sum_probs=46.4
Q ss_pred ccccccccccCcceEEEeC-CCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDL-DATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~-~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.++.++|.++. ..+.. ++++. ++++.+.+.+++++||++++ ++++|+++.+|++.
T Consensus 53 ~~~v~~~~~~~~--~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPEN--LLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccCc--eEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence 457889996533 44555 89997 99999999999999999865 79999999999875
No 138
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.29 E-value=0.00046 Score=54.28 Aligned_cols=57 Identities=25% Similarity=0.389 Sum_probs=49.4
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.++.++|.+ ++.++++++++. ++++.+.+.+.+++||++++.++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4789999976 567899999998 99999999999999999762378999999999864
No 139
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.29 E-value=0.00036 Score=56.14 Aligned_cols=57 Identities=16% Similarity=0.405 Sum_probs=49.6
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+.+++++|.+ .+.+++.++++. ++++.+.+.+.+++||.+++ ++++|+|+.+|+++
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 34678889865 678999999998 99999999999999999865 78999999999875
No 140
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.28 E-value=0.0004 Score=57.42 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=49.0
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+.+++++|++ ++..+++++++. ++++.+.+.++.++||.++ ++++|+++.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 35679999976 557899999998 9999999999999999975 78999999999875
No 141
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.28 E-value=0.00037 Score=56.96 Aligned_cols=55 Identities=24% Similarity=0.434 Sum_probs=48.3
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
..++.++|.+ ++..++.++++. ++++.+.+.+.+++||.++ ++++|+++.+|++.
T Consensus 77 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 77 GKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred CCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 4478899965 568899999998 9999999999999999986 79999999999875
No 142
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.27 E-value=0.0003 Score=71.20 Aligned_cols=61 Identities=11% Similarity=0.225 Sum_probs=54.6
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~ 266 (351)
.+.+|+++|+|...+.++++++++. ++++.+.+++..++||++++ ++++|+++.+|+++..
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~ 221 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVK 221 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHh
Confidence 4678999999876688999999998 99999999999999999865 7899999999998654
No 143
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.27 E-value=0.00047 Score=54.27 Aligned_cols=56 Identities=18% Similarity=0.450 Sum_probs=48.3
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+.++.++|.+ ++.+++.++++. ++++.+.+++...+||++++ +++|+++.+|++.
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence 45678899965 567889999998 99999999999999999753 8999999999864
No 144
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.26 E-value=0.0004 Score=55.45 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=50.0
Q ss_pred ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
..+.+++++|.+ .+.+++.+++++ ++++.+.+++++.+||+++ ++++|+++.+|++.
T Consensus 64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 456779999976 568899999998 9999999999999999975 78999999999875
No 145
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.25 E-value=0.00047 Score=67.45 Aligned_cols=117 Identities=12% Similarity=0.054 Sum_probs=80.3
Q ss_pred HHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-cccccc
Q 018729 196 IIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-DAVPLR 274 (351)
Q Consensus 196 ~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-~~~~l~ 274 (351)
++..+-...-.+++++|.|.... ...+.+ . +++. ++.+...|.++ |++...+....... +...+.
T Consensus 264 ~~~~~~~~~~l~a~~~m~~~~~~--~~~~~~-~--~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 329 (382)
T TIGR03415 264 FVAHTNPLNVLTARSLMRPLTDL--EHVDGG-W--CVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVE 329 (382)
T ss_pred HhcccCcccceeHHHHhcccccc--cccCcc-h--hhhh---cccceeEeecc------ceecccchHhHhhcccccchh
Confidence 33433334456899999764433 222222 2 3333 77888888754 88887775442221 223466
Q ss_pred ccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729 275 KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG 329 (351)
Q Consensus 275 ~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~ 329 (351)
+ .....+.|++++++.+++....+.+.++++ +|+ |+++|+|+..+++..+.+
T Consensus 330 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 330 S-LEAAPTVINPDTLMRDVLAARHRTGGAILL-VEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred h-hcccCcccCCCCcHHHHHHHHhcCCCCeEE-eeC-CeEEEEEeHHHHHHHHhc
Confidence 6 477788999999999999999988888765 476 999999999999988754
No 146
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.25 E-value=0.00053 Score=54.90 Aligned_cols=57 Identities=14% Similarity=0.338 Sum_probs=49.4
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+.++.++|. .++.+++.++++. ++++.+.+.+...+||++++ ++++|+++.+|++.
T Consensus 65 ~~~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMK--TDVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhC--CCCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 4567888994 4667899999998 99999999999999999875 78999999999874
No 147
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.25 E-value=0.00032 Score=56.07 Aligned_cols=57 Identities=16% Similarity=0.391 Sum_probs=49.6
Q ss_pred ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.+.++.++|.+ +..+++.++++. ++++.+.+.+.+++||+++ ++++|+++.+|++.
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 345678889965 568899999998 9999999999999999985 79999999999875
No 148
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.25 E-value=0.00048 Score=54.19 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=49.6
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~ 265 (351)
+.+++++|.+ +...++.++++. ++++.+.+++...+||++++ ++++|+++..|++..
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence 4578999965 568899999998 99999999999999999875 799999999998753
No 149
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.24 E-value=0.00044 Score=54.95 Aligned_cols=57 Identities=14% Similarity=0.261 Sum_probs=46.9
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
..++++|.+....+..+.++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 45889997655444444499997 99999999999999999865 78999999999864
No 150
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.24 E-value=0.00061 Score=54.07 Aligned_cols=56 Identities=23% Similarity=0.490 Sum_probs=47.8
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCC-CCceeEEeEhhhhcc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLS 264 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~-~d~ivGiv~~kdll~ 264 (351)
.+++++|.+ ++..++.++++. ++++.+.+++..++||++++ .++++|+++.+|++.
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 347788865 567899999998 99999999999999999764 268999999999875
No 151
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.22 E-value=0.00059 Score=53.29 Aligned_cols=55 Identities=31% Similarity=0.536 Sum_probs=48.0
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
..+.++|.+ ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|++.
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 468888965 567899999998 99999999999999999875 79999999999874
No 152
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.20 E-value=0.00038 Score=57.12 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=50.0
Q ss_pred ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
..+.+++++|.+ +..+++.++++. ++++.+.+.+.+++||++ + ++++|+++.+|+++
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~ 134 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR 134 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence 356789999965 568899999998 999999999999999998 4 89999999999875
No 153
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.20 E-value=0.00099 Score=52.69 Aligned_cols=53 Identities=25% Similarity=0.510 Sum_probs=47.2
Q ss_pred ccccccccCcceEEEeCCCCccHHHHHHHHh-cCCcEEeeEcCCCC-ceeEEeEhhhhc
Q 018729 207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMT-MGHSRVPVYSGNPT-NIIGLILVKNLL 263 (351)
Q Consensus 207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~-~~~sr~PV~~~~~d-~ivGiv~~kdll 263 (351)
+++++|++ .+.++.++.++. ++.+.+.+ ++.+++||.+++ + +++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDD-GGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHcC
Confidence 69999976 668899999998 99999999 799999999875 4 999999999974
No 154
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.19 E-value=0.00067 Score=53.15 Aligned_cols=57 Identities=18% Similarity=0.333 Sum_probs=49.2
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+.+++++|.+ ++..++.++++. ++++.+.+.+...+||++++ ++++|+++.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 35678899965 568899999998 89999999999999999875 78999999999874
No 155
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.18 E-value=0.00066 Score=53.40 Aligned_cols=55 Identities=22% Similarity=0.455 Sum_probs=48.0
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.++.++|.+ ++..+++++++. ++++.+.+++..++||+++ ++++|+++..|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 4578888964 667899999998 9999999999999999975 78999999999864
No 156
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.17 E-value=0.00062 Score=53.59 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=48.7
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+.+++++|.+ +...+++++++. ++++.+.+++..++||.++ ++++|+++.+|++.
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 35578899965 668899999997 9999999999999999974 78999999999864
No 157
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.17 E-value=0.00078 Score=64.25 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=50.5
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~ 265 (351)
+.+++++|++ +..++++++++. ++++.+.+++..++||++++ ++++|+++.+|++++
T Consensus 262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence 4568999976 567899999998 99999999999999999876 689999999999864
No 158
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.16 E-value=0.00041 Score=57.55 Aligned_cols=50 Identities=14% Similarity=-0.017 Sum_probs=45.1
Q ss_pred cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG 329 (351)
Q Consensus 280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~ 329 (351)
.+..+++++++.++++.|.+++.+.++|+|+.|+++|++|..|+++.+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence 45789999999999999998998899999999999999999999987653
No 159
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.16 E-value=0.00063 Score=52.79 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=48.2
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.++.++|.+ +..+++.++++. ++++.+.+++.+++||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~ 104 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL 104 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence 4568899965 568899999998 9999999999999999975 79999999999863
No 160
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.15 E-value=0.00064 Score=54.39 Aligned_cols=57 Identities=16% Similarity=0.402 Sum_probs=49.3
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+.++.++|.+ +...++.++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 35668889954 568899999998 99999999999999999875 79999999999875
No 161
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.15 E-value=0.00082 Score=52.46 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=46.8
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.++.++|.+ +..+++.++++. ++++.+.+++.+++||.+ + ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence 357888976 457899999998 999999999999999997 3 79999999999864
No 162
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.15 E-value=0.00093 Score=52.31 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=47.5
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.++.++|.+ ++.+++.++++. ++++.+.+++.+.+||.+++ ++++|+++.+|+++
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence 457788865 568899999998 99999999999999999864 78999999999864
No 163
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.14 E-value=0.00047 Score=55.30 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=44.2
Q ss_pred cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP 327 (351)
Q Consensus 280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l 327 (351)
++..+++++++.++++.|.+++.+..+|+|+.|+++|++|..|++...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~ 49 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLA 49 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHH
Confidence 567899999999999999999999999999999999999999999754
No 164
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.12 E-value=0.00084 Score=64.22 Aligned_cols=58 Identities=24% Similarity=0.401 Sum_probs=51.1
Q ss_pred ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (351)
Q Consensus 203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~ 265 (351)
+.+.+|+++|++ ++.++++++++. ++++.|.+++..++||.++ ++++|+++.+|+++.
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 446789999976 668899999998 9999999999999999963 689999999999864
No 165
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.12 E-value=0.0003 Score=64.87 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=53.4
Q ss_pred cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729 270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (351)
Q Consensus 270 ~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~ 326 (351)
+.+..++|.|++..++++++++++.+.|++++..-.+|+||+.+++|+||..|+.+.
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~ 300 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKH 300 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhc
Confidence 456678899999999999999999999999999999999999999999999999984
No 166
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.10 E-value=0.00078 Score=52.89 Aligned_cols=56 Identities=21% Similarity=0.413 Sum_probs=48.8
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+.+++++|.+ +..+++.++++. ++++.+.+.+.+++||.+ + ++++|+++.+|++.
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence 45678899965 567899999998 999999999999999998 4 78999999999864
No 167
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.09 E-value=0.00082 Score=52.78 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=48.0
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
..+.++|.. ++..++.++++. ++++.+.+++..++||++++ ++++|+++.+|+..
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 468889954 678899999998 99999999999999999865 78999999999864
No 168
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.08 E-value=0.00069 Score=55.10 Aligned_cols=51 Identities=4% Similarity=-0.101 Sum_probs=45.7
Q ss_pred ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729 279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG 329 (351)
Q Consensus 279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~ 329 (351)
+++.+++++.++.++++.|++++....+|+|+.|+++|++|..|++..+..
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH
Confidence 567889999999999999999988899999999999999999999875543
No 169
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.07 E-value=0.00055 Score=62.04 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=52.4
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~ 266 (351)
+.+|+|+|.+ ++++++.|..+- |+++.|..++..|+-|.+.+ |+.+|+++..|+|...
T Consensus 233 ~~kV~~~M~k--~vitI~eDe~i~-dAir~M~~~nVGRLlV~ds~-gkpvGiITrTDIL~~i 290 (294)
T COG2524 233 DAKVSDYMRK--NVITINEDEDIY-DAIRLMNKNNVGRLLVTDSN-GKPVGIITRTDILTRI 290 (294)
T ss_pred cccHHHHhcc--CCceEcCchhHH-HHHHHHHhcCcceEEEEccC-CcEEEEEehHHHHHHh
Confidence 5789999955 889999999998 99999999999999999865 8999999999998754
No 170
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.06 E-value=0.0009 Score=43.50 Aligned_cols=45 Identities=20% Similarity=0.491 Sum_probs=39.5
Q ss_pred eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.+++.++++. ++++.+.+++++++||++++ ++++|+++.+++..
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~ 46 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIK 46 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHH
Confidence 35678899998 99999999999999999875 78999999999864
No 171
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.04 E-value=0.00074 Score=53.27 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=48.2
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.++.++|.+ +..+++.++++. ++++.+.+++.+++||.++ +.++|+++.+|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 4578899965 567899999998 9999999999999999985 78999999999875
No 172
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.02 E-value=0.0009 Score=53.59 Aligned_cols=55 Identities=25% Similarity=0.419 Sum_probs=48.0
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+++++|.+ +...++.++++. ++++.+.+++.+++||++++ ++++|+++.+|++.
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence 458888854 678899999998 99999999999999999865 79999999999875
No 173
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.00 E-value=0.001 Score=52.19 Aligned_cols=55 Identities=24% Similarity=0.446 Sum_probs=48.1
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.++.++|.. ++..+++++++. ++++.+.+++.+++||.++ ++++|+++.+|+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 3568888854 678899999998 9999999999999999975 78999999999874
No 174
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.94 E-value=0.0013 Score=53.33 Aligned_cols=58 Identities=19% Similarity=0.369 Sum_probs=49.1
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcC-CCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~-~~d~ivGiv~~kdll~ 264 (351)
.+.+++++|++ ++.++++++++. ++++.+.++++..+||.++ +.++++|+++.+|++.
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45678899965 578899999998 9999999999999999853 3478999999999874
No 175
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.93 E-value=0.001 Score=52.66 Aligned_cols=49 Identities=14% Similarity=-0.002 Sum_probs=44.5
Q ss_pred cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR 328 (351)
Q Consensus 280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~ 328 (351)
++++++.++++.++++.|++++.+.++|+|+.|+++|+++..|+.+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhh
Confidence 4678999999999999999999999999999999999999999987664
No 176
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.89 E-value=0.0018 Score=50.75 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=47.6
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.++.++|.+ +...++.++++. ++++.+.+.+...+||.+++ ++++|+++.+|+++
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 467888854 668899999998 99999999999999999875 78999999999874
No 177
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.86 E-value=0.0022 Score=51.81 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=44.2
Q ss_pred cccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 210 DAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 210 ~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+.|. .+..++++++++. ++++.+.+++.+++||++++ ++++|+++..|+++
T Consensus 75 ~~~~--~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKS--RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred cccc--CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 4553 3568899999998 99999999999999999876 89999999999875
No 178
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.84 E-value=0.0018 Score=50.86 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=44.2
Q ss_pred ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729 279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR 328 (351)
Q Consensus 279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~ 328 (351)
+++..++.+.++.++++.|.+.+...++|+|++|+++|++|..|+++.+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~ 50 (112)
T cd04624 1 RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVA 50 (112)
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHh
Confidence 35678999999999999999888888999999899999999999987654
No 179
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.84 E-value=0.0014 Score=51.34 Aligned_cols=49 Identities=14% Similarity=0.001 Sum_probs=43.9
Q ss_pred ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729 279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP 327 (351)
Q Consensus 279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l 327 (351)
+++..++++.++.++++.|.+++.+.++|+|+.|+++|++|..|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 50 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAV 50 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHH
Confidence 5677899999999999999988888888999999999999999998654
No 180
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.82 E-value=0.0017 Score=50.96 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=44.9
Q ss_pred ccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+.++|. ++.+++.++++. ++++.+.+++.+.+||++++ ++++|+++.+|++.
T Consensus 58 ~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 110 (111)
T cd04590 58 DLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE 110 (111)
T ss_pred CHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence 4566663 357789999998 99999999999999999875 78999999999864
No 181
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.79 E-value=0.0017 Score=67.03 Aligned_cols=59 Identities=27% Similarity=0.363 Sum_probs=50.9
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCC-CceeEEeEhhhhcccc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP-TNIIGLILVKNLLSVD 266 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~-d~ivGiv~~kdll~~~ 266 (351)
+.+++|+|++ +..+++++++++ ++++.+.+++.+++||+|++. ++++|+++.+|+++..
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 4679999976 567899999998 999999999999999998653 4799999999998653
No 182
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.77 E-value=0.0019 Score=53.78 Aligned_cols=56 Identities=20% Similarity=0.423 Sum_probs=48.9
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
.+.++.++|.+ +..+++.++++. ++++.+.+.+++++||+++ ++++|+++.+|++.
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 45678899965 568899999998 9999999999999999975 78999999999864
No 183
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.64 E-value=0.0033 Score=49.37 Aligned_cols=49 Identities=20% Similarity=0.408 Sum_probs=42.9
Q ss_pred ccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 211 AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 211 iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
+|.+ +..+++.++++. ++++.+.+++..++||.+ + ++++|+++.+|+++
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~-~-~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVD-E-GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CeEEEEEEhhhhhc
Confidence 7865 567899999998 999999999999999995 3 78999999999865
No 184
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.64 E-value=0.0024 Score=63.86 Aligned_cols=71 Identities=13% Similarity=0.231 Sum_probs=60.3
Q ss_pred HHHHHHHhhhcc---cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729 192 DETTIIAGALEL---TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 267 (351)
Q Consensus 192 ~e~~~i~~vl~l---~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~ 267 (351)
++++|.+.++.= ...+|+++||. ++++++.++.+= |++-.|.+++..++||.++ |+++|+++..|++....
T Consensus 197 T~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 197 TRKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFS 270 (610)
T ss_pred ehHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhC
Confidence 456788888762 24689999987 779999999996 9999999999999999975 79999999999987543
No 185
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.63 E-value=0.0026 Score=49.15 Aligned_cols=51 Identities=14% Similarity=-0.074 Sum_probs=45.0
Q ss_pred cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ 330 (351)
Q Consensus 280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~ 330 (351)
++..++.+.++.++++.|++++.+.++|+|+.|+++|+++..|+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~ 52 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEG 52 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhc
Confidence 456789999999999999998888999999999999999999999766543
No 186
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.58 E-value=0.0022 Score=59.34 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=49.6
Q ss_pred ccccccccc-CceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729 272 PLRKMIIRR-IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP 327 (351)
Q Consensus 272 ~l~~i~~~~-~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l 327 (351)
++.++|.++ ++.++++.++.++++.|.+.+...++|+|++|+++|++|..|+.+.+
T Consensus 156 ~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 156 KVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHH
Confidence 566776677 88999999999999999988888999999999999999999998754
No 187
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.55 E-value=0.0025 Score=49.66 Aligned_cols=48 Identities=10% Similarity=-0.045 Sum_probs=43.1
Q ss_pred cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR 328 (351)
Q Consensus 280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~ 328 (351)
++.+++++.++.++++.|.+++.+.++|+|+ |+++|++|.+|+.+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~ 49 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALI 49 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHh
Confidence 4577899999999999999999889999998 99999999999988654
No 188
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.52 E-value=0.0027 Score=63.51 Aligned_cols=58 Identities=5% Similarity=-0.036 Sum_probs=51.8
Q ss_pred ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729 271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR 328 (351)
Q Consensus 271 ~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~ 328 (351)
.+++++|.+++..+++++++.++++.|.+++.+.++|+|++|+++|+||..|+.+.+.
T Consensus 335 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 335 ATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF 392 (454)
T ss_pred CCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 4677887788899999999999999999888888999999999999999999987654
No 189
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.49 E-value=0.003 Score=50.15 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=41.8
Q ss_pred ccCceeCCCCCHHHHHHHHhhCC-ceEEEEEecCCCcccccchhhhhccc
Q 018729 279 RRIPRVSEDMPLYDILNEFQKGH-SHIAVVYKDLNEKKEGELFKDNCKKP 327 (351)
Q Consensus 279 ~~~~~V~~~~~l~~lL~~~~~~~-~~~aiVvDe~g~~~GiVT~~Dil~~l 327 (351)
|+++.++++.++.++++.|++.+ .+.++|+|+ |+++|+++..|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~ 49 (119)
T cd04598 1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELL 49 (119)
T ss_pred CCcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHH
Confidence 46678999999999999998876 678889999 9999999999988644
No 190
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.44 E-value=0.0039 Score=62.45 Aligned_cols=59 Identities=20% Similarity=0.387 Sum_probs=52.4
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~ 266 (351)
+.+++++|++ .++.++++++++. ++++.+.+++...+||++++ ++++|+++.+|+++..
T Consensus 142 ~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 142 GKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR 200 (450)
T ss_pred CCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence 5679999974 4678899999998 99999999999999999876 8999999999998753
No 191
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.32 E-value=0.0062 Score=47.38 Aligned_cols=54 Identities=17% Similarity=0.320 Sum_probs=45.7
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
..+.++|.+ ...+++.++++. ++++.+.+++..++||.++ ++++|+++.+|++.
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 356777854 457789999998 9999999999999999974 68999999999864
No 192
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.29 E-value=0.0075 Score=56.94 Aligned_cols=117 Identities=12% Similarity=0.143 Sum_probs=78.8
Q ss_pred ccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc---cc------cccccc
Q 018729 207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AV------PLRKMI 277 (351)
Q Consensus 207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~---~~------~l~~i~ 277 (351)
+++++|.| ++++++++++. ++++.|.+++....||+++. |.++|+|+..|++.....+ +. .+...
T Consensus 134 ~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~- 207 (292)
T PRK15094 134 SMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL- 207 (292)
T ss_pred CHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEEe-
Confidence 46788864 34799999998 99999999999999999875 7899999999998754321 11 12221
Q ss_pred cccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCCCCCcccc
Q 018729 278 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKGEM 340 (351)
Q Consensus 278 ~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~~~~~~~~ 340 (351)
....+.|+..+++.++-+.+.- .+ . .+ +.-|....+-...+.........+.
T Consensus 208 ~~~~~~v~G~~~l~dl~~~l~~---~l-~-~~------~~~Tl~G~i~~~l~~iP~~Gd~i~~ 259 (292)
T PRK15094 208 SRHTWTVRALASIEDFNEAFGT---HF-S-DE------EVDTIGGLVMQAFGHLPARGETIDI 259 (292)
T ss_pred CCCeEEEEeccCHHHHHHHhCC---CC-C-CC------CCccHHHHHHHHhCcCCCCCCEEEE
Confidence 2234679999999999988743 21 1 12 3445555555555555555444433
No 193
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=95.87 E-value=0.0045 Score=52.28 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=51.1
Q ss_pred cccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729 272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG 329 (351)
Q Consensus 272 ~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~ 329 (351)
+.+.+|.+|++++.++.++.++++.|++++..-.+|+++ |+++|-||-.|+.+....
T Consensus 66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le 122 (187)
T COG3620 66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLE 122 (187)
T ss_pred eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhc
Confidence 445667888999999999999999999999999999988 999999999999887644
No 194
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=94.72 E-value=0.029 Score=55.95 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=52.9
Q ss_pred ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (351)
Q Consensus 203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~ 266 (351)
-.+..++++|.++ +++++.+++.+ ++.+.+.+++....||++++ ++++|+++..|++...
T Consensus 193 ~~~~~i~~im~~~--~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi 252 (451)
T COG2239 193 EPDELLKDLMEDD--VVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVI 252 (451)
T ss_pred CcHhHHHHHhccc--ceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHH
Confidence 4567899999774 78999999987 99999999999999999976 8999999999998653
No 195
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=94.33 E-value=0.049 Score=51.84 Aligned_cols=59 Identities=17% Similarity=0.312 Sum_probs=51.6
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~ 266 (351)
++.+...+|+..+ +++.+.+++. .+.+.|.-.++.-+||.+++ .+++|+++.+|+++..
T Consensus 247 ~~t~ieKVMtknp--~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~l 305 (432)
T COG4109 247 PSTTIEKVMTKNP--ITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSL 305 (432)
T ss_pred CCccHHHHhccCC--eeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHH
Confidence 4567889998744 7899999998 89999999999999999876 7999999999998754
No 196
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.31 E-value=0.038 Score=53.46 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729 187 GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (351)
Q Consensus 187 g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~ 265 (351)
|.+...+-+.+ +=....+.|+|+|+. ++.+.+.+++ ++-+.+.++...++||++++ |+++.++...||.+.
T Consensus 156 G~vtsrdi~f~----~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 156 GIITSRDIQFL----EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKN 226 (503)
T ss_pred EEEehhhhhhh----hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhhh
Confidence 34444444444 345677999999988 7889999998 89999999999999999876 999999999999764
No 197
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=93.32 E-value=0.093 Score=51.12 Aligned_cols=57 Identities=19% Similarity=0.464 Sum_probs=49.1
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 267 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~ 267 (351)
..+.+.|.+ ...++++++++. +++..+.++++. +||++++ ++++|+|+..+++....
T Consensus 302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALY 358 (363)
T ss_pred Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 457888855 567899999998 999999999999 9999876 89999999999987643
No 198
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.53 E-value=0.46 Score=43.84 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=67.3
Q ss_pred eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--------c---------cccccccccc
Q 018729 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------A---------VPLRKMIIRR 280 (351)
Q Consensus 218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--------~---------~~l~~i~~~~ 280 (351)
++.|..|. + |++++. +|+-|.++ |+++-+=+..+++..+.++ + ..+.+.+...
T Consensus 189 ivfVTHDi--d-EA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 189 IVFVTHDI--D-EALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred EEEEecCH--H-HHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 45555554 4 777654 67888864 7888888888877654321 0 1112221111
Q ss_pred C----ceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729 281 I----PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (351)
Q Consensus 281 ~----~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~ 326 (351)
. --++......+.+..+...+...+.|+|+.|+++|.+|..|++..
T Consensus 259 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 259 EPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred ccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 1 124555666778999999999999999999999999999998753
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=90.07 E-value=0.34 Score=47.79 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=48.2
Q ss_pred ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 267 (351)
Q Consensus 205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~ 267 (351)
+..+++.|.+ +..+++.++++. +++..+.++.+. +||++++ ++++|+|+..+++....
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD 393 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 3467778854 557899999998 999999987777 9999876 89999999999987654
No 200
>PRK11573 hypothetical protein; Provisional
Probab=89.72 E-value=0.88 Score=45.14 Aligned_cols=79 Identities=13% Similarity=0.099 Sum_probs=58.2
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----c-c----ccccccccccCceeCCC
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----D-A----VPLRKMIIRRIPRVSED 287 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~-~----~~l~~i~~~~~~~V~~~ 287 (351)
++..++.+.++. ++++.+++++..-.-|+|+. |...|+|+..|++...-. + + .++... ....+.|+..
T Consensus 263 ~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~~~~v~G~ 339 (413)
T PRK11573 263 EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDGSVIIDGT 339 (413)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCCEEEEEee
Confidence 456799999998 99999999887777788765 889999999999875321 1 1 111111 2234678899
Q ss_pred CCHHHHHHHHh
Q 018729 288 MPLYDILNEFQ 298 (351)
Q Consensus 288 ~~l~~lL~~~~ 298 (351)
++++++-+.+.
T Consensus 340 ~~l~d~~~~l~ 350 (413)
T PRK11573 340 ANVREINKAFN 350 (413)
T ss_pred eEHHHHHHHhC
Confidence 99999988874
No 201
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=78.20 E-value=9.3 Score=38.05 Aligned_cols=99 Identities=10% Similarity=0.074 Sum_probs=65.3
Q ss_pred HHHHHhhhcccc-cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc---
Q 018729 194 TTIIAGALELTE-KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--- 269 (351)
Q Consensus 194 ~~~i~~vl~l~~-~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--- 269 (351)
++++....+-.. ...+..+. +...++++.++. ++++.+++++-.---|.|+- |.+.|+|+..|++...-.+
T Consensus 259 Kdll~~~~~~~~~~~~~~~~~---~~~~Vpet~~~~-~lL~~~r~~~~hmAiVvDEy-G~~~GlVTleDIiEeIvGei~d 333 (429)
T COG1253 259 KDLLRALLDGQSDLDLRVLVR---PPLFVPETLSLS-DLLEEFREERTHMAIVVDEY-GGVEGLVTLEDIIEEIVGEIPD 333 (429)
T ss_pred HHHHHHHhcCccccchhhccc---CCeEecCCCcHH-HHHHHHHHhCCeEEEEEEcC-CCeEEEeEHHHHHHHHhCCCcC
Confidence 455555554432 22332222 557799999998 99999998877766777765 8999999999998753221
Q ss_pred --c----ccccccccccCceeCCCCCHHHHHHHHh
Q 018729 270 --A----VPLRKMIIRRIPRVSEDMPLYDILNEFQ 298 (351)
Q Consensus 270 --~----~~l~~i~~~~~~~V~~~~~l~~lL~~~~ 298 (351)
+ ...... ..+-+.|...+++.++-+.+-
T Consensus 334 e~d~~~~~~~~~~-~~~~~~v~G~~~l~e~~~~l~ 367 (429)
T COG1253 334 EHDEDEEEDIIQR-DDDGWLVDGRVPLEELEELLG 367 (429)
T ss_pred cccccccccceEe-cCCcEEEeccccHHHHHHHhC
Confidence 1 111121 122366888999999887764
No 202
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=74.40 E-value=4.6 Score=41.62 Aligned_cols=54 Identities=15% Similarity=0.300 Sum_probs=46.2
Q ss_pred cccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729 208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (351)
Q Consensus 208 v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~ 265 (351)
....|.|.+ ++++.++++. .+..+++.-|...+-|+... .+++|+++.+|+...
T Consensus 692 l~p~~n~sP--ytV~~~mSl~-k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 692 LHPFMNPSP--YTVPETMSLA-KAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLARY 745 (762)
T ss_pred cccccCCCC--cccCcccchH-HHHHHHHHhcceeEEEecCC-CceeEEEehhhhhhH
Confidence 456787744 8899999998 89999999999999999865 788999999998753
No 203
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=69.58 E-value=8.4 Score=37.43 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=58.6
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc-----cccccccc--c
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMI--I 278 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~-----~~~l~~i~--~ 278 (351)
-+-.+++.--.+...+|.++++. +-+..+.+++-.---|+|+ -|++.|+|+..|++...-.+ +....++. .
T Consensus 265 ~~k~d~~~~a~epyFVPe~Tpl~-~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~ 342 (423)
T COG4536 265 FTKEDILRAADEPYFVPEGTPLS-DQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQS 342 (423)
T ss_pred ccHhHHHHHhcCCeecCCCCcHH-HHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHHhccccccCcccchhhcccC
Confidence 44455665556788999999998 7888888765544456665 59999999999998643211 11222221 1
Q ss_pred ccCceeCCCCCHHHHHHHHh
Q 018729 279 RRIPRVSEDMPLYDILNEFQ 298 (351)
Q Consensus 279 ~~~~~V~~~~~l~~lL~~~~ 298 (351)
.--+.+..+.++.|+=+.|.
T Consensus 343 dgs~iidGs~~iRdlNr~l~ 362 (423)
T COG4536 343 DGSFIIDGSANVRDLNRALD 362 (423)
T ss_pred CCcEEEeCCCcHHHHHHhcC
Confidence 11345667777777766554
No 204
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=67.56 E-value=5.7 Score=39.02 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=42.6
Q ss_pred cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (351)
Q Consensus 206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~ 266 (351)
.++.+ + .+++.++++++++. +++..+.++++. +||.+ + ++++|+|...+++...
T Consensus 326 ~~~~~-~--~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 326 QEVES-L--EAAPTVINPDTLMR-DVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHAL 379 (382)
T ss_pred cchhh-h--cccCcccCCCCcHH-HHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHH
Confidence 34555 3 34567889999998 999999888877 78876 3 8999999999988654
No 205
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=55.85 E-value=15 Score=34.17 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=41.1
Q ss_pred cccccccccccCcce--EEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729 204 TEKTAKDAMTPISKA--FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v--~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~ 264 (351)
...++.+.|.+.... -.+....... +++..+...+.+.+||++++ ++++|.++..+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVDED-GRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhh
Confidence 455677777653321 1122233333 67778888999999999886 89999999999864
No 206
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=51.68 E-value=9.7 Score=40.21 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=47.1
Q ss_pred cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCC-ceeEEeEhhhhccc
Q 018729 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT-NIIGLILVKNLLSV 265 (351)
Q Consensus 204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d-~ivGiv~~kdll~~ 265 (351)
..+.|.++|+. ++.++..+.|.. |..+.+..+....+|++++... -++|.|..+.|...
T Consensus 586 h~v~VE~iMV~--dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~l 645 (931)
T KOG0476|consen 586 HTVKVEHIMVT--DVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTAL 645 (931)
T ss_pred eEEEeeeeccc--cceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHH
Confidence 35679999975 889999999998 8887777776889999985422 36899999987643
No 207
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=51.10 E-value=62 Score=29.95 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=28.5
Q ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 018729 108 TLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLG 160 (351)
Q Consensus 108 ~l~lvfgEiiPK~la~~~~~~~a~~~a~~~~~~~~l~~P~~~~~~~~~~~l~~ 160 (351)
+++.+|.=|+-|+ ++.+++.-+|+|++++-+++.|+-.+
T Consensus 197 ~~~~i~~~Iltkt--------------Yi~YlliPiF~P~~~~Yg~~ynk~ck 235 (285)
T PF03563_consen 197 LIIFIFLIILTKT--------------YICYLLIPIFYPIAYLYGWLYNKSCK 235 (285)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666665 45677888999999999999998543
No 208
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=50.18 E-value=20 Score=26.18 Aligned_cols=49 Identities=22% Similarity=0.484 Sum_probs=32.0
Q ss_pred EeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCccc
Q 018729 243 VPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKE 316 (351)
Q Consensus 243 ~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~G 316 (351)
.||++++ ++++|++.. |+ .+.. +.+.+..++-.+...+.++|++|.++.
T Consensus 19 ~pi~~~~-g~~~Gvv~~-di---------~l~~--------------l~~~i~~~~~~~~g~~~ivd~~G~ii~ 67 (81)
T PF02743_consen 19 VPIYDDD-GKIIGVVGI-DI---------SLDQ--------------LSEIISNIKFGNNGYAFIVDKNGTIIA 67 (81)
T ss_dssp EEEEETT-TEEEEEEEE-EE---------EHHH--------------HHHHHTTSBBTTTBEEEEEETTSBBCE
T ss_pred EEEECCC-CCEEEEEEE-Ee---------ccce--------------eeeEEEeeEECCCEEEEEEECCCCEEE
Confidence 5888855 899999864 21 1111 244455556666778888898888764
No 209
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=45.07 E-value=27 Score=35.51 Aligned_cols=34 Identities=18% Similarity=0.450 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729 230 DTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (351)
Q Consensus 230 e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~ 265 (351)
.+.+.+.+.|-+-++|+++ +++.|++|.||+.+-
T Consensus 417 ~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK~ 450 (681)
T COG2216 417 AAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVKP 450 (681)
T ss_pred HHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcch
Confidence 4455677788899999975 799999999999864
No 210
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=44.47 E-value=20 Score=22.45 Aligned_cols=17 Identities=6% Similarity=0.176 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018729 21 IIALVCFAGLMAGLTLG 37 (351)
Q Consensus 21 ~~~li~~sa~fs~~E~A 37 (351)
+++|++.++.|..++.|
T Consensus 6 ~l~CLA~aavF~~a~va 22 (37)
T PF11131_consen 6 FLICLAAAAVFTAAGVA 22 (37)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 46688999999999875
No 211
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=43.60 E-value=48 Score=33.17 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=32.2
Q ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHhccCC
Q 018729 110 ILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPI--------SYPISKILDLMLGKGH 163 (351)
Q Consensus 110 ~lvfgEiiPK~la~~~~~~~a~~~a~~~~~~~~l~~P~--------~~~~~~~~~~l~~~~~ 163 (351)
..++|-+..+--|..+|..+.. .|+.+++.++..-+ .|++..+..++.|.+.
T Consensus 368 TTIlasitwQ~aASafpiaFlN--Np~ty~lL~~aL~LE~TGlchgawvi~~i~k~vaG~q~ 427 (545)
T TIGR00811 368 TTILASIAWQLVASAFPIAFLS--NPIVYIVLRIVLLIEATGICAGAWFLGMIHKKVAGFQL 427 (545)
T ss_pred HHHHHHHHHHHHHHhCcHHHhc--CHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Confidence 3478999999999999986543 24444443332221 4556666666667654
No 212
>PHA02975 hypothetical protein; Provisional
Probab=43.39 E-value=47 Score=24.04 Aligned_cols=10 Identities=10% Similarity=0.338 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 018729 22 IALVCFAGLM 31 (351)
Q Consensus 22 ~~li~~sa~f 31 (351)
++.+++.++|
T Consensus 51 i~~v~~~~~~ 60 (69)
T PHA02975 51 IIFITCIAVF 60 (69)
T ss_pred HHHHHHHHHH
Confidence 3333333443
No 213
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=42.54 E-value=25 Score=33.77 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=37.7
Q ss_pred ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 267 (351)
Q Consensus 217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~ 267 (351)
++.+++.++++. +.+..+.+.+. -+||++++ ++++|++....++.+..
T Consensus 336 ~~~~v~~d~~~~-~~~~~~~~~~~-p~aVvde~-~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 336 DVLTVDADTPLS-EILARIRQAPC-PVAVVDED-GRYVGIISRGELLEALA 383 (386)
T ss_pred cccccCccchHH-HHHHHHhcCCC-ceeEEcCC-CcEEEEecHHHHHHHHh
Confidence 557788888887 77777766554 47899886 89999999999887543
No 214
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=31.43 E-value=57 Score=22.96 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=25.0
Q ss_pred ccCceeCCCCCHHHHHHHHhhCCceEEEEEe
Q 018729 279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309 (351)
Q Consensus 279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvD 309 (351)
.++..+++.+++.++|+.+.-...++++.+|
T Consensus 6 g~~~~~~~~~tv~~ll~~l~~~~~~i~V~vN 36 (65)
T cd00565 6 GEPREVEEGATLAELLEELGLDPRGVAVALN 36 (65)
T ss_pred CeEEEcCCCCCHHHHHHHcCCCCCcEEEEEC
Confidence 3456688889999999999877778887776
No 215
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=30.83 E-value=37 Score=20.48 Aligned_cols=6 Identities=50% Similarity=0.711 Sum_probs=2.9
Q ss_pred CCCCCC
Q 018729 1 MATDSD 6 (351)
Q Consensus 1 ~~~~~~ 6 (351)
|++|+|
T Consensus 1 misd~Q 6 (30)
T CHL00190 1 MISDSQ 6 (30)
T ss_pred CchHHH
Confidence 445544
No 216
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=30.24 E-value=28 Score=25.84 Aligned_cols=25 Identities=4% Similarity=-0.036 Sum_probs=18.5
Q ss_pred ceEEEEEecCCCcccccchhhhhcc
Q 018729 302 SHIAVVYKDLNEKKEGELFKDNCKK 326 (351)
Q Consensus 302 ~~~aiVvDe~g~~~GiVT~~Dil~~ 326 (351)
....-|+|++|..+|+++..+.++.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHH
Confidence 3556688999999999999998863
No 217
>PHA02819 hypothetical protein; Provisional
Probab=29.54 E-value=1.1e+02 Score=22.35 Aligned_cols=10 Identities=10% Similarity=0.391 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 018729 22 IALVCFAGLM 31 (351)
Q Consensus 22 ~~li~~sa~f 31 (351)
++.+++.++|
T Consensus 53 l~~~~~~~~~ 62 (71)
T PHA02819 53 LVTIVFVIIF 62 (71)
T ss_pred HHHHHHHHHH
Confidence 4344444443
No 218
>PRK07440 hypothetical protein; Provisional
Probab=28.96 E-value=64 Score=23.33 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=25.7
Q ss_pred cCceeCCCCCHHHHHHHHhhCCceEEEEEec
Q 018729 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (351)
Q Consensus 280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe 310 (351)
++..+++.+++.++|+.+.-...++|+.+|.
T Consensus 12 ~~~~~~~~~tl~~lL~~l~~~~~~vav~~N~ 42 (70)
T PRK07440 12 ETRTCSSGTSLPDLLQQLGFNPRLVAVEYNG 42 (70)
T ss_pred EEEEcCCCCCHHHHHHHcCCCCCeEEEEECC
Confidence 3456788899999999998888888888863
No 219
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=28.43 E-value=1.1e+02 Score=28.03 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=61.9
Q ss_pred ccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---------ccccccccc
Q 018729 207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVPLRKMI 277 (351)
Q Consensus 207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---------~~~~l~~i~ 277 (351)
.++++..| .+.++.+-.++ ..++.++.+++..-.|+|+- |-+-|.|+..|++...-. ++..++.+
T Consensus 134 ~i~~lLRP---av~VPESKrvd-~lLkeFR~~RnHMAIViDEf-GgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~l- 207 (293)
T COG4535 134 DIKELLRP---AVVVPESKRVD-RLLKEFRSQRNHMAIVIDEF-GGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQL- 207 (293)
T ss_pred cHHHhccc---ceecccchhHH-HHHHHHHhhcCceEEEEecc-CCeeeeEEHHHHHHHHhcccccccchhhhhhhHhh-
Confidence 35666644 45689999998 88999998888888888764 889999999999875321 12334444
Q ss_pred cccCceeCCCCCHHHHHHHHh
Q 018729 278 IRRIPRVSEDMPLYDILNEFQ 298 (351)
Q Consensus 278 ~~~~~~V~~~~~l~~lL~~~~ 298 (351)
.+..+.|..=+++++.=+.|.
T Consensus 208 s~~~~~VrALT~IedFNe~F~ 228 (293)
T COG4535 208 SRHTWRVRALTEIEDFNEAFG 228 (293)
T ss_pred cCCceEEEecccHHHHHHHhc
Confidence 566677888888877766664
No 220
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=27.71 E-value=71 Score=22.62 Aligned_cols=30 Identities=7% Similarity=0.153 Sum_probs=24.0
Q ss_pred cCceeCCCCCHHHHHHHHhhCCceEEEEEe
Q 018729 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309 (351)
Q Consensus 280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvD 309 (351)
++..+++..++.++|+.+......+|+.+|
T Consensus 8 ~~~~~~~~~tl~~ll~~l~~~~~~vaVavN 37 (66)
T PRK08053 8 QPMQCAAGQTVHELLEQLNQLQPGAALAIN 37 (66)
T ss_pred eEEEcCCCCCHHHHHHHcCCCCCcEEEEEC
Confidence 345678889999999998777777887776
No 221
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=27.15 E-value=33 Score=36.43 Aligned_cols=62 Identities=5% Similarity=0.004 Sum_probs=51.6
Q ss_pred cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEe--cCCCcccccchhhhhccccCCC
Q 018729 270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK--DLNEKKEGELFKDNCKKPRGQP 331 (351)
Q Consensus 270 ~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvD--e~g~~~GiVT~~Dil~~l~~~~ 331 (351)
+..+.++|.+++.++..+++..|+-+.++.......++|| |.--++|.|.+..+...+.+.+
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHI 650 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhc
Confidence 3567889999999999999999999999888677777777 4556789999999988776644
No 222
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=26.78 E-value=85 Score=32.74 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=41.1
Q ss_pred cccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729 208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (351)
Q Consensus 208 v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~ 265 (351)
.+++|-+ ..+++....+.+ -+++++++-|.+..-|-+ .+++.|+++.||++..
T Consensus 641 lk~il~~--tp~tv~d~tp~~-~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 641 LKDILDM--TPFTVTDLTPME-TVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRH 693 (696)
T ss_pred ceeeccC--CcccccccCcHH-HHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHh
Confidence 4666644 236777777876 788899999999888864 3899999999998864
No 223
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=26.31 E-value=3.9e+02 Score=22.41 Aligned_cols=7 Identities=0% Similarity=-0.064 Sum_probs=2.8
Q ss_pred hhHHHHH
Q 018729 125 YGLTVGA 131 (351)
Q Consensus 125 ~~~~~a~ 131 (351)
-|..++.
T Consensus 106 lPk~l~~ 112 (183)
T PF01595_consen 106 LPKALAR 112 (183)
T ss_pred HHHHHHH
Confidence 3444433
No 224
>PF15284 PAGK: Phage-encoded virulence factor
Probab=25.88 E-value=97 Score=21.92 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018729 18 VLGIIALVCFAGLMAGLTLGL 38 (351)
Q Consensus 18 l~~~~~li~~sa~fs~~E~Al 38 (351)
+++.+++++.++.||++-+|-
T Consensus 7 ifL~l~~~LsA~~FSasamAa 27 (61)
T PF15284_consen 7 IFLALVFILSAAGFSASAMAA 27 (61)
T ss_pred HHHHHHHHHHHhhhhHHHHHH
Confidence 455666777888999988774
No 225
>CHL00038 psbL photosystem II protein L
Probab=25.49 E-value=1.1e+02 Score=19.32 Aligned_cols=23 Identities=13% Similarity=0.314 Sum_probs=13.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q 018729 9 CCGTMFFVFVLGIIALVCFAGLM 31 (351)
Q Consensus 9 ~~~~~~~~~l~~~~~li~~sa~f 31 (351)
+-+.-.|-.+++.++.+++|..|
T Consensus 14 NRTSLy~GLLlifvl~vlfssyf 36 (38)
T CHL00038 14 NRTSLYWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Confidence 44455665555555556666554
No 226
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=24.65 E-value=83 Score=22.22 Aligned_cols=39 Identities=18% Similarity=0.025 Sum_probs=29.6
Q ss_pred cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhh
Q 018729 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDN 323 (351)
Q Consensus 280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Di 323 (351)
.+..+++++++.++|+.+.-.....|+.+|. ++|.+.+-
T Consensus 8 ~~~~~~~~~tl~~ll~~l~~~~~~vav~~N~-----~iv~r~~~ 46 (65)
T PRK05863 8 EQVEVDEQTTVAALLDSLGFPEKGIAVAVDW-----SVLPRSDW 46 (65)
T ss_pred EEEEcCCCCcHHHHHHHcCCCCCcEEEEECC-----cCcChhHh
Confidence 3456778899999999998888888888864 45555554
No 227
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=24.58 E-value=88 Score=21.88 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=24.3
Q ss_pred cCceeCCCCCHHHHHHHHhhCCceEEEEEe
Q 018729 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309 (351)
Q Consensus 280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvD 309 (351)
++..+++..++.++|..+.-...+.++.+|
T Consensus 8 ~~~~~~~~~tl~~lL~~l~~~~~~vav~vN 37 (66)
T PRK05659 8 EPRELPDGESVAALLAREGLAGRRVAVEVN 37 (66)
T ss_pred eEEEcCCCCCHHHHHHhcCCCCCeEEEEEC
Confidence 345678889999999998877778887775
No 228
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=24.03 E-value=1.4e+02 Score=18.76 Aligned_cols=23 Identities=13% Similarity=0.314 Sum_probs=12.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q 018729 9 CCGTMFFVFVLGIIALVCFAGLM 31 (351)
Q Consensus 9 ~~~~~~~~~l~~~~~li~~sa~f 31 (351)
|-+.-.|-.+++.++-+++|..|
T Consensus 13 NRTSLY~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 13 NRTSLYWGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHHhhhhh
Confidence 44555565555555556666554
No 229
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=22.95 E-value=99 Score=21.64 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=23.0
Q ss_pred CceeCCCCCHHHHHHHHhhCCceEEEEEe
Q 018729 281 IPRVSEDMPLYDILNEFQKGHSHIAVVYK 309 (351)
Q Consensus 281 ~~~V~~~~~l~~lL~~~~~~~~~~aiVvD 309 (351)
...+++++++.++|+.+.-.....++.+|
T Consensus 7 ~~~~~~~~tv~~ll~~l~~~~~~v~v~vN 35 (64)
T TIGR01683 7 PVEVEDGLTLAALLESLGLDPRRVAVAVN 35 (64)
T ss_pred EEEcCCCCcHHHHHHHcCCCCCeEEEEEC
Confidence 45578889999999999877777777665
No 230
>PRK06286 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.52 E-value=2e+02 Score=22.15 Aligned_cols=31 Identities=19% Similarity=0.081 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Q 018729 13 MFFVFVLGIIALVCFAGLMAGLTLGLMSLGL 43 (351)
Q Consensus 13 ~~~~~l~~~~~li~~sa~fs~~E~Al~s~~~ 43 (351)
++|..++..+++++.+.|+-..-.+++.++.
T Consensus 2 ~~~~~ii~~illiiG~~f~l~gaiGllRlPD 32 (91)
T PRK06286 2 MQFVGIIQDILLIIASIGILIASIRLWRVEK 32 (91)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhheeCCC
Confidence 4566666666666666666666778887776
No 231
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.16 E-value=5.8e+02 Score=22.56 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 018729 15 FVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVL 49 (351)
Q Consensus 15 ~~~l~~~~~li~~sa~fs~~E~Al~s~~~~~l~~l 49 (351)
|+.+++.+++++.+.|+..+-++++.++-...+..
T Consensus 4 i~eiI~~vLLliG~~f~ligaIGLlRfPD~YtRLH 38 (197)
T PRK12585 4 IIEIIISIMILIGGLLSILAAIGVIRLPDVYTRTH 38 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHhh
Confidence 55555555566666666777788888887655443
Done!