BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018730
         (351 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
           From Pseudomonas Aeruginosa
 pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
           From Pseudomonas Aeruginosa
          Length = 632

 Score = 35.0 bits (79), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 121/339 (35%), Gaps = 68/339 (20%)

Query: 28  VIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSN--------------GKI 73
           ++VFGDS  DAG     P  A     P G       +T RF+N              G  
Sbjct: 18  LVVFGDSLSDAGQ---FPDPA----GPAG-------STSRFTNRVGPTYQNGSGEIFGPT 63

Query: 74  ATDFISEALGVKP-TIPAYLDPAYNISDFATGVTFASAATGYDNATSNAVIPMWKELEYY 132
           A   +   LG+ P  + A   P       A G  +A      D    +        +E  
Sbjct: 64  APMLLGNQLGIAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLIERD 123

Query: 133 KDYQKLLRAYLGETKANEIISE--ALHVISAGTNDFLENYYAMPAGPGSRRTQFTITGYQ 190
               +    YL +     + ++  AL+ I+ G NDFL+            R    +   Q
Sbjct: 124 NTLLRSRDGYLVDRARQGLGADPNALYYITGGGNDFLQG-----------RILNDVQAQQ 172

Query: 191 DFLADIAQNFVKSLYNLGARKISLGGLPPMGCMPLERTTNLMGQHECVERYNNVASQFNG 250
              A    + V++L   GAR I +  LP +G  P      L             ASQ +G
Sbjct: 173 --AAGRLVDSVQALQQAGARYIVVWLLPDLGLTPATFGGPLQ----------PFASQLSG 220

Query: 251 KLSG-LVLKLNKELPGIKLVFSNPYFAFVQIIRRPALYGF--DVTEVACCATGMFEMGYA 307
             +  L  +L++   G  ++  N      + +  PA +G   D   +  C +G       
Sbjct: 221 TFNAELTAQLSQA--GANVIPLNIPLLLKEGMANPASFGLAADQNLIGTCFSGN-----G 273

Query: 308 CARDSMF----SCTNADKYVFWDAFHPTQKTNRIIADHV 342
           C  +  +    S  +  K +F D+ HPT    R+IAD+ 
Sbjct: 274 CTMNPTYGINGSTPDPSKLLFNDSVHPTITGQRLIADYT 312


>pdb|1UF2|A Chain A, The Atomic Structure Of Rice Dwarf Virus (Rdv)
 pdb|1UF2|B Chain B, The Atomic Structure Of Rice Dwarf Virus (Rdv)
          Length = 1019

 Score = 28.5 bits (62), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 106 TFASAATGYDNATSNAVIPMWKELEYYKDYQKLLRAYLGETKANEIISEALHVISAGTND 165
           T+A+A   Y ++   A IP+  +L    D Q LL    G     +I++EA+    AG  D
Sbjct: 609 TYANAVNVYCDSVYRADIPIEWKLHQSVDPQDLLFGVFGIVPQYQILNEAVPDFFAGGED 668

Query: 166 FL 167
            L
Sbjct: 669 IL 670


>pdb|3IPV|A Chain A, Crystal Structure Of Spatholobus Parviflorus Seed Lectin
 pdb|3IPV|C Chain C, Crystal Structure Of Spatholobus Parviflorus Seed Lectin
          Length = 251

 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 269 VFSNPYFAFVQIIRRPALYGFDVTEVACCATGMFEMGYACARDSMFSCTNADKYVFWDAF 328
           VF++P +  +         GFDV  ++   T  + +    A   + +  +A K +     
Sbjct: 134 VFTDPPYTHI---------GFDVNSISSIKTVKWSLANGEAAKVLITYNSAVKLLVASLV 184

Query: 329 HPTQKTNRIIADHV 342
           +P+ KT+ I+AD V
Sbjct: 185 YPSSKTSFILADIV 198


>pdb|3IPV|B Chain B, Crystal Structure Of Spatholobus Parviflorus Seed Lectin
 pdb|3IPV|D Chain D, Crystal Structure Of Spatholobus Parviflorus Seed Lectin
          Length = 239

 Score = 28.1 bits (61), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 269 VFSNPYFAFVQIIRRPALYGFDVTEVACCATGMFEMGYACARDSMFSCTNADKYVFWDAF 328
           VF++P +  +         GFDV  ++   T  + +    A   + +  +A K +     
Sbjct: 134 VFTDPPYTHI---------GFDVNSISSIKTVKWSLANGEAAKVLITYNSAVKLLVASLV 184

Query: 329 HPTQKTNRIIADHV 342
           +P+ KT+ I+AD V
Sbjct: 185 YPSSKTSFILADIV 198


>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I
           Complexed With Ggpp
          Length = 306

 Score = 27.7 bits (60), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 131 YYKDYQKLLRAYLGETKANEIISEALHVISAGTNDFLENY 170
           Y +DY++++   L   KA E    ALH+   G N+   +Y
Sbjct: 28  YDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHY 67


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,473,437
Number of Sequences: 62578
Number of extensions: 438300
Number of successful extensions: 898
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 6
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)