Query 018731
Match_columns 351
No_of_seqs 284 out of 2720
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2672 Lipoate synthase [Coen 100.0 2.9E-61 6.2E-66 423.8 24.4 300 49-348 57-356 (360)
2 COG0320 LipA Lipoate synthase 100.0 5.5E-61 1.2E-65 423.2 23.8 285 47-338 19-303 (306)
3 PLN02428 lipoic acid synthase 100.0 1E-59 2.2E-64 441.6 30.3 303 47-349 46-348 (349)
4 PTZ00413 lipoate synthase; Pro 100.0 3.8E-59 8.1E-64 434.7 29.1 314 32-347 75-394 (398)
5 TIGR00510 lipA lipoate synthas 100.0 1.8E-58 3.9E-63 428.9 28.4 295 43-343 8-302 (302)
6 PRK12928 lipoyl synthase; Prov 100.0 5.1E-54 1.1E-58 398.4 29.9 281 46-333 8-289 (290)
7 PRK05481 lipoyl synthase; Prov 100.0 3.1E-46 6.8E-51 347.3 31.0 280 49-335 4-283 (289)
8 TIGR03700 mena_SCO4494 putativ 100.0 5.7E-30 1.2E-34 245.2 22.6 248 58-314 3-274 (351)
9 PRK06256 biotin synthase; Vali 100.0 1.3E-29 2.8E-34 241.9 24.1 274 56-344 10-307 (336)
10 PRK08444 hypothetical protein; 100.0 1.6E-29 3.6E-34 240.6 21.5 245 57-314 4-273 (353)
11 PRK07094 biotin synthase; Prov 100.0 1.3E-28 2.7E-33 233.9 27.0 232 67-313 4-245 (323)
12 COG0502 BioB Biotin synthase a 100.0 1.3E-29 2.8E-34 235.2 19.2 231 67-313 17-259 (335)
13 PRK08508 biotin synthase; Prov 100.0 6.7E-29 1.5E-33 230.5 23.2 235 99-344 2-257 (279)
14 PRK09240 thiH thiamine biosynt 100.0 3.6E-29 7.7E-34 241.0 21.3 272 58-342 28-330 (371)
15 PRK05926 hypothetical protein; 100.0 1.2E-28 2.7E-33 235.9 23.3 248 56-313 18-294 (370)
16 COG0621 MiaB 2-methylthioadeni 100.0 3E-29 6.4E-34 241.8 18.2 264 31-311 86-365 (437)
17 PLN02389 biotin synthase 100.0 1.8E-28 3.9E-33 235.3 23.5 265 66-344 49-337 (379)
18 PRK08445 hypothetical protein; 100.0 3.1E-28 6.8E-33 232.1 23.1 240 66-314 6-270 (348)
19 TIGR03551 F420_cofH 7,8-dideme 100.0 4.4E-28 9.6E-33 231.6 23.6 237 67-314 4-267 (343)
20 PRK05927 hypothetical protein; 100.0 1.4E-28 3E-33 234.2 19.5 241 65-314 8-271 (350)
21 TIGR02351 thiH thiazole biosyn 100.0 5.3E-28 1.1E-32 232.6 20.6 272 58-342 27-329 (366)
22 PRK15108 biotin synthase; Prov 100.0 1E-26 2.2E-31 221.7 26.7 233 66-313 9-252 (345)
23 TIGR03699 mena_SCO4550 menaqui 100.0 2.3E-27 5E-32 226.7 20.8 238 66-314 5-265 (340)
24 PRK07360 FO synthase subunit 2 100.0 4.4E-27 9.6E-32 226.6 22.9 250 56-313 10-288 (371)
25 PRK09234 fbiC FO synthase; Rev 99.9 3.9E-26 8.4E-31 237.5 24.8 249 56-314 477-754 (843)
26 PRK09613 thiH thiamine biosynt 99.9 8.4E-26 1.8E-30 221.3 25.4 242 56-311 36-304 (469)
27 TIGR00433 bioB biotin syntheta 99.9 9.8E-26 2.1E-30 211.5 21.6 256 77-346 5-282 (296)
28 TIGR00423 radical SAM domain p 99.9 2.6E-25 5.7E-30 209.7 22.8 207 103-314 5-232 (309)
29 PRK14327 (dimethylallyl)adenos 99.9 8.3E-26 1.8E-30 224.4 19.7 271 23-311 146-432 (509)
30 COG1060 ThiH Thiamine biosynth 99.9 2.6E-25 5.7E-30 211.8 19.3 253 54-313 9-284 (370)
31 PRK14340 (dimethylallyl)adenos 99.9 5.2E-25 1.1E-29 216.8 21.6 197 103-301 149-355 (445)
32 PRK14332 (dimethylallyl)adenos 99.9 7.5E-25 1.6E-29 215.8 21.3 187 103-292 154-349 (449)
33 PRK05904 coproporphyrinogen II 99.9 8.3E-25 1.8E-29 209.3 18.7 220 103-331 6-244 (353)
34 PRK05660 HemN family oxidoredu 99.9 2.8E-23 6.2E-28 200.9 25.1 221 105-331 8-248 (378)
35 PRK14329 (dimethylallyl)adenos 99.9 1.3E-23 2.9E-28 208.1 22.9 198 103-302 168-381 (467)
36 PRK14326 (dimethylallyl)adenos 99.9 5.1E-24 1.1E-28 212.5 19.9 187 103-292 157-355 (502)
37 PRK08446 coproporphyrinogen II 99.9 3.6E-23 7.8E-28 198.3 23.2 217 106-331 3-235 (350)
38 TIGR01579 MiaB-like-C MiaB-lik 99.9 5.1E-23 1.1E-27 201.8 22.0 196 103-302 138-345 (414)
39 PRK06267 hypothetical protein; 99.9 8E-23 1.7E-27 195.5 22.6 218 75-313 3-232 (350)
40 PRK14336 (dimethylallyl)adenos 99.9 8.4E-23 1.8E-27 199.9 23.0 196 103-301 124-331 (418)
41 PRK14862 rimO ribosomal protei 99.9 6.7E-23 1.5E-27 201.8 22.2 198 103-304 139-355 (440)
42 PRK14328 (dimethylallyl)adenos 99.9 5.8E-23 1.2E-27 202.5 21.1 195 103-301 147-353 (439)
43 PRK08207 coproporphyrinogen II 99.9 1.4E-22 3E-27 200.9 23.7 210 103-319 163-400 (488)
44 PRK14339 (dimethylallyl)adenos 99.9 1E-22 2.2E-27 199.4 22.6 195 103-301 127-336 (420)
45 PRK14331 (dimethylallyl)adenos 99.9 8.4E-23 1.8E-27 201.3 21.9 188 103-293 146-344 (437)
46 TIGR03550 F420_cofG 7,8-dideme 99.9 8.2E-23 1.8E-27 193.6 20.7 202 103-313 4-233 (322)
47 TIGR00539 hemN_rel putative ox 99.9 1.6E-22 3.5E-27 194.6 22.6 219 106-330 3-240 (360)
48 PRK09234 fbiC FO synthase; Rev 99.9 1.7E-22 3.7E-27 210.4 24.3 247 56-313 17-302 (843)
49 PRK14335 (dimethylallyl)adenos 99.9 1.5E-22 3.2E-27 200.2 22.7 197 103-302 152-365 (455)
50 PRK07379 coproporphyrinogen II 99.9 1.5E-22 3.1E-27 197.3 21.6 221 103-331 10-260 (400)
51 PRK14325 (dimethylallyl)adenos 99.9 2.2E-22 4.8E-27 198.8 23.1 196 103-302 147-356 (444)
52 TIGR01125 MiaB-like tRNA modif 99.9 2.6E-22 5.6E-27 197.6 23.0 198 103-304 135-344 (430)
53 PRK05628 coproporphyrinogen II 99.9 1.7E-22 3.6E-27 195.6 21.3 219 105-330 4-252 (375)
54 PRK08599 coproporphyrinogen II 99.9 1.1E-22 2.4E-27 197.1 19.8 216 108-330 6-244 (377)
55 PRK05799 coproporphyrinogen II 99.9 3.1E-22 6.8E-27 193.8 22.7 221 105-331 5-244 (374)
56 PRK14337 (dimethylallyl)adenos 99.9 2E-22 4.4E-27 198.8 21.5 196 103-302 148-356 (446)
57 PRK14330 (dimethylallyl)adenos 99.9 3.1E-22 6.7E-27 197.2 22.6 196 103-301 140-347 (434)
58 PRK09058 coproporphyrinogen II 99.9 1.7E-22 3.7E-27 199.4 20.8 217 104-328 62-306 (449)
59 TIGR01574 miaB-methiolase tRNA 99.9 2.8E-22 6.1E-27 197.6 21.9 196 103-302 145-354 (438)
60 PRK14338 (dimethylallyl)adenos 99.9 5.9E-22 1.3E-26 196.1 23.9 188 103-293 155-354 (459)
61 PRK14334 (dimethylallyl)adenos 99.9 3.9E-22 8.6E-27 196.6 22.6 199 103-304 138-346 (440)
62 TIGR00089 RNA modification enz 99.9 5.3E-22 1.2E-26 195.4 21.3 187 103-292 139-337 (429)
63 PRK06294 coproporphyrinogen II 99.9 5.1E-22 1.1E-26 191.6 20.4 220 104-331 7-248 (370)
64 PRK08898 coproporphyrinogen II 99.9 1.3E-21 2.8E-26 190.4 23.3 219 104-330 20-261 (394)
65 TIGR01578 MiaB-like-B MiaB-lik 99.9 1.8E-21 3.9E-26 190.8 23.6 189 103-293 133-332 (420)
66 PRK06582 coproporphyrinogen II 99.9 9.5E-22 2.1E-26 190.6 21.2 220 103-330 11-254 (390)
67 PRK09057 coproporphyrinogen II 99.9 2E-21 4.2E-26 188.3 22.5 219 104-330 5-247 (380)
68 PRK14333 (dimethylallyl)adenos 99.9 1.1E-21 2.3E-26 194.0 20.6 187 103-292 148-353 (448)
69 PRK06245 cofG FO synthase subu 99.9 2.1E-21 4.6E-26 185.3 20.7 203 103-313 12-237 (336)
70 PRK08208 coproporphyrinogen II 99.9 3.2E-21 6.9E-26 189.6 22.4 215 105-327 41-276 (430)
71 TIGR00538 hemN oxygen-independ 99.9 1E-20 2.2E-25 187.4 24.0 220 104-329 50-293 (455)
72 PRK09249 coproporphyrinogen II 99.9 1.3E-20 2.9E-25 186.5 24.0 218 104-328 50-292 (453)
73 PRK13347 coproporphyrinogen II 99.9 1.6E-20 3.4E-25 185.9 23.4 219 104-329 51-294 (453)
74 KOG2900 Biotin synthase [Coenz 99.9 1.3E-21 2.8E-26 171.3 12.5 227 68-306 52-290 (380)
75 TIGR02026 BchE magnesium-proto 99.9 1E-20 2.2E-25 189.3 20.5 180 105-292 195-384 (497)
76 TIGR03471 HpnJ hopanoid biosyn 99.9 1.3E-20 2.9E-25 187.7 20.4 177 105-292 198-384 (472)
77 smart00729 Elp3 Elongator prot 99.9 3.3E-20 7.2E-25 164.0 20.3 182 105-292 3-198 (216)
78 COG0635 HemN Coproporphyrinoge 99.9 2.5E-20 5.4E-25 181.5 20.7 220 103-330 34-280 (416)
79 PRK08629 coproporphyrinogen II 99.8 5.8E-18 1.3E-22 166.1 23.5 214 103-327 52-283 (433)
80 cd01335 Radical_SAM Radical SA 99.8 2.5E-18 5.4E-23 150.0 17.7 178 108-292 2-187 (204)
81 TIGR01212 radical SAM protein, 99.8 1.1E-17 2.5E-22 157.0 22.5 205 103-315 18-252 (302)
82 PRK13361 molybdenum cofactor b 99.8 7.5E-18 1.6E-22 160.4 21.2 191 104-306 15-213 (329)
83 PRK05301 pyrroloquinoline quin 99.8 5.3E-17 1.2E-21 157.5 25.1 171 103-283 16-189 (378)
84 PF04055 Radical_SAM: Radical 99.8 3.6E-18 7.9E-23 144.7 14.5 158 107-272 1-166 (166)
85 TIGR02666 moaA molybdenum cofa 99.8 8.8E-17 1.9E-21 153.4 22.4 174 104-288 11-192 (334)
86 TIGR02109 PQQ_syn_pqqE coenzym 99.8 1.3E-16 2.8E-21 153.7 23.4 171 103-283 7-180 (358)
87 PRK00164 moaA molybdenum cofac 99.8 1.1E-16 2.4E-21 152.6 21.0 173 104-286 18-196 (331)
88 TIGR01210 conserved hypothetic 99.7 3.2E-16 6.9E-21 147.8 22.0 180 103-292 15-219 (313)
89 PLN02951 Molybderin biosynthes 99.7 5.7E-16 1.2E-20 149.4 23.3 173 104-288 59-238 (373)
90 TIGR02668 moaA_archaeal probab 99.7 3E-16 6.4E-21 147.7 19.1 165 104-279 11-180 (302)
91 KOG2492 CDK5 activator-binding 99.7 4.9E-17 1.1E-21 151.3 13.1 241 36-292 167-441 (552)
92 COG2896 MoaA Molybdenum cofact 99.7 2.4E-16 5.3E-21 146.3 17.0 164 105-279 13-183 (322)
93 TIGR03470 HpnH hopanoid biosyn 99.7 1.1E-15 2.5E-20 144.5 21.5 168 103-283 28-198 (318)
94 TIGR01290 nifB nitrogenase cof 99.7 2.8E-15 6E-20 147.3 24.5 202 103-312 24-256 (442)
95 PRK01254 hypothetical protein; 99.7 5.4E-16 1.2E-20 154.7 19.5 186 103-290 372-599 (707)
96 TIGR01211 ELP3 histone acetylt 99.7 1.5E-14 3.3E-19 143.9 24.6 204 100-310 65-328 (522)
97 PRK00955 hypothetical protein; 99.7 4.4E-15 9.6E-20 149.0 20.0 179 103-286 292-517 (620)
98 PRK11145 pflA pyruvate formate 99.7 1.5E-14 3.2E-19 132.3 21.5 203 105-319 22-245 (246)
99 TIGR02493 PFLA pyruvate format 99.7 3.3E-14 7.2E-19 129.0 22.4 197 105-313 17-234 (235)
100 TIGR03822 AblA_like_2 lysine-2 99.6 5.3E-14 1.1E-18 133.3 21.9 192 103-312 88-291 (321)
101 COG1856 Uncharacterized homolo 99.6 4.3E-14 9.3E-19 122.3 18.2 203 103-314 11-217 (275)
102 COG1032 Fe-S oxidoreductase [E 99.6 1.1E-14 2.5E-19 145.2 15.5 184 104-292 199-402 (490)
103 COG2100 Predicted Fe-S oxidore 99.6 8.9E-14 1.9E-18 126.5 19.1 201 109-317 113-331 (414)
104 TIGR02495 NrdG2 anaerobic ribo 99.6 2.1E-13 4.5E-18 119.8 21.2 161 103-276 16-183 (191)
105 COG0535 Predicted Fe-S oxidore 99.6 7.5E-13 1.6E-17 126.4 21.9 196 103-308 19-218 (347)
106 PRK13758 anaerobic sulfatase-m 99.5 1E-12 2.2E-17 127.2 22.4 175 107-288 9-197 (370)
107 PRK14456 ribosomal RNA large s 99.5 5.5E-12 1.2E-16 120.9 24.1 200 107-319 125-346 (368)
108 PRK14459 ribosomal RNA large s 99.5 8.9E-12 1.9E-16 119.2 23.5 199 108-318 126-351 (373)
109 TIGR00238 KamA family protein. 99.5 4E-12 8.6E-17 120.9 20.9 191 103-311 113-313 (331)
110 TIGR03821 AblA_like_1 lysine-2 99.5 3.5E-12 7.7E-17 120.7 20.1 190 104-312 97-297 (321)
111 PRK14455 ribosomal RNA large s 99.5 8.7E-12 1.9E-16 119.4 22.5 199 108-319 114-330 (356)
112 COG1180 PflA Pyruvate-formate 99.5 4.1E-12 9E-17 116.6 19.1 207 103-324 35-250 (260)
113 PRK13745 anaerobic sulfatase-m 99.5 4.6E-12 9.9E-17 124.3 20.5 171 109-286 20-204 (412)
114 PRK14469 ribosomal RNA large s 99.5 1.7E-11 3.7E-16 117.2 23.8 198 108-318 106-317 (343)
115 COG1243 ELP3 Histone acetyltra 99.5 1.8E-11 3.9E-16 116.7 22.1 206 101-311 65-321 (515)
116 PRK14468 ribosomal RNA large s 99.5 1.8E-11 3.9E-16 116.7 22.2 200 107-318 97-313 (343)
117 PRK13762 tRNA-modifying enzyme 99.4 1.4E-11 3E-16 116.6 21.1 197 109-318 64-295 (322)
118 PRK14460 ribosomal RNA large s 99.4 2.3E-11 4.9E-16 116.4 22.7 197 108-318 107-324 (354)
119 PRK14463 ribosomal RNA large s 99.4 4.1E-11 8.8E-16 114.4 22.9 199 107-318 107-317 (349)
120 PRK14457 ribosomal RNA large s 99.4 5.1E-11 1.1E-15 113.5 23.2 198 107-318 105-322 (345)
121 TIGR00048 radical SAM enzyme, 99.4 4.3E-11 9.2E-16 114.6 22.6 199 108-319 110-326 (355)
122 TIGR03278 methan_mark_10 putat 99.4 7.9E-11 1.7E-15 114.2 23.8 200 116-328 38-256 (404)
123 PRK14470 ribosomal RNA large s 99.4 6.7E-11 1.4E-15 112.3 22.9 197 107-317 101-313 (336)
124 KOG4355 Predicted Fe-S oxidore 99.4 4.1E-12 8.8E-17 118.0 13.2 185 103-293 187-387 (547)
125 PRK14466 ribosomal RNA large s 99.4 1.4E-10 3.1E-15 109.7 23.7 197 108-317 108-316 (345)
126 TIGR03820 lys_2_3_AblA lysine- 99.4 1.2E-10 2.7E-15 112.5 22.4 164 103-282 108-282 (417)
127 PRK14467 ribosomal RNA large s 99.4 2.1E-10 4.5E-15 109.3 23.0 199 106-318 102-321 (348)
128 COG1242 Predicted Fe-S oxidore 99.3 2.3E-10 5E-15 102.7 20.2 198 106-312 27-254 (312)
129 COG0641 AslB Arylsulfatase reg 99.3 2.1E-10 4.5E-15 110.4 20.9 190 110-307 14-215 (378)
130 COG2108 Uncharacterized conser 99.3 3E-11 6.6E-16 110.5 14.1 171 91-283 22-199 (353)
131 PRK14453 chloramphenicol/florf 99.3 4.8E-10 1E-14 106.9 21.3 201 107-317 104-321 (347)
132 TIGR02494 PFLE_PFLC glycyl-rad 99.3 6.7E-10 1.4E-14 104.2 20.9 171 132-315 107-295 (295)
133 PRK14462 ribosomal RNA large s 99.3 9.7E-10 2.1E-14 104.8 22.0 199 107-318 114-330 (356)
134 PRK11194 ribosomal RNA large s 99.2 3.4E-09 7.4E-14 101.8 23.5 199 108-318 108-329 (372)
135 PRK14454 ribosomal RNA large s 99.2 3.6E-09 7.7E-14 100.9 23.3 198 107-318 105-318 (342)
136 PRK10076 pyruvate formate lyas 99.2 3.6E-09 7.8E-14 94.3 20.0 177 130-319 18-210 (213)
137 COG0731 Fe-S oxidoreductases [ 99.2 2.3E-09 5E-14 98.7 18.9 168 110-288 30-215 (296)
138 PRK14464 ribosomal RNA large s 99.2 4.1E-09 8.9E-14 99.9 20.9 200 107-318 100-309 (344)
139 PRK14465 ribosomal RNA large s 99.1 1.2E-08 2.7E-13 96.8 21.8 197 107-317 109-320 (342)
140 COG1031 Uncharacterized Fe-S o 99.1 3.5E-09 7.5E-14 101.0 17.2 188 104-292 184-412 (560)
141 COG1313 PflX Uncharacterized F 99.0 3.2E-08 7E-13 89.5 17.0 201 109-320 124-333 (335)
142 TIGR03365 Bsubt_queE 7-cyano-7 98.9 4E-08 8.6E-13 89.3 15.9 134 102-257 21-160 (238)
143 PRK14461 ribosomal RNA large s 98.9 3.6E-07 7.9E-12 87.0 21.3 199 108-317 112-343 (371)
144 COG2516 Biotin synthase-relate 98.9 8.5E-08 1.8E-12 88.0 15.6 197 103-308 29-246 (339)
145 COG1244 Predicted Fe-S oxidore 98.8 3.7E-07 8.1E-12 84.0 16.9 173 103-283 47-243 (358)
146 COG1533 SplB DNA repair photol 98.8 7.6E-07 1.7E-11 83.2 18.2 175 105-283 31-219 (297)
147 COG4277 Predicted DNA-binding 98.7 6.1E-07 1.3E-11 81.5 15.7 173 109-288 60-257 (404)
148 KOG2876 Molybdenum cofactor bi 98.7 3.3E-08 7.2E-13 88.2 5.9 168 107-286 15-190 (323)
149 COG1625 Fe-S oxidoreductase, r 98.6 1E-06 2.2E-11 83.9 15.0 147 167-318 94-253 (414)
150 COG1509 KamA Lysine 2,3-aminom 98.6 3.2E-06 6.9E-11 79.2 17.6 166 101-282 109-286 (369)
151 PF13353 Fer4_12: 4Fe-4S singl 98.6 1.1E-07 2.4E-12 78.8 6.6 83 107-192 9-94 (139)
152 cd03174 DRE_TIM_metallolyase D 98.5 7.4E-06 1.6E-10 75.4 18.3 147 130-282 15-165 (265)
153 PF13394 Fer4_14: 4Fe-4S singl 98.5 9E-08 2E-12 77.3 4.8 83 109-193 4-91 (119)
154 COG5014 Predicted Fe-S oxidore 98.5 1.4E-06 3.1E-11 73.2 11.6 155 110-276 48-213 (228)
155 TIGR02826 RNR_activ_nrdG3 anae 98.4 4.4E-06 9.5E-11 70.1 11.2 99 103-213 15-116 (147)
156 COG0820 Predicted Fe-S-cluster 98.4 4.8E-05 1E-09 71.8 18.8 198 108-317 106-321 (349)
157 PRK11121 nrdG anaerobic ribonu 98.2 7.1E-06 1.5E-10 69.5 9.4 84 107-193 20-108 (154)
158 TIGR02491 NrdG anaerobic ribon 98.2 8E-06 1.7E-10 69.2 9.5 69 110-180 22-94 (154)
159 COG0602 NrdG Organic radical a 97.9 5.4E-05 1.2E-09 67.5 9.3 81 103-190 22-107 (212)
160 TIGR03279 cyano_FeS_chp putati 97.8 0.00093 2E-08 65.1 16.0 78 194-275 126-206 (433)
161 COG1964 Predicted Fe-S oxidore 97.8 0.0006 1.3E-08 65.8 14.1 139 120-274 78-227 (475)
162 cd07948 DRE_TIM_HCS Saccharomy 97.7 0.017 3.7E-07 53.3 21.9 141 130-282 18-160 (262)
163 cd07939 DRE_TIM_NifV Streptomy 97.7 0.016 3.5E-07 53.3 21.6 141 130-282 16-158 (259)
164 PRK05692 hydroxymethylglutaryl 97.6 0.013 2.7E-07 54.9 20.1 144 130-282 22-174 (287)
165 PRK11858 aksA trans-homoaconit 97.5 0.021 4.5E-07 55.6 21.1 141 130-282 22-164 (378)
166 TIGR02660 nifV_homocitr homoci 97.5 0.023 4.9E-07 55.1 21.2 141 130-282 19-161 (365)
167 TIGR02090 LEU1_arch isopropylm 97.5 0.017 3.6E-07 56.0 19.5 141 130-282 18-160 (363)
168 cd07940 DRE_TIM_IPMS 2-isoprop 97.4 0.025 5.4E-07 52.3 19.5 141 130-282 16-162 (268)
169 cd07943 DRE_TIM_HOA 4-hydroxy- 97.4 0.03 6.5E-07 51.6 19.8 136 130-282 18-160 (263)
170 cd07944 DRE_TIM_HOA_like 4-hyd 97.4 0.03 6.6E-07 51.7 19.7 136 130-282 16-157 (266)
171 PLN02746 hydroxymethylglutaryl 97.4 0.012 2.6E-07 56.3 17.3 142 130-282 64-216 (347)
172 PRK08195 4-hyroxy-2-oxovalerat 97.3 0.019 4.1E-07 54.9 17.9 135 130-282 21-163 (337)
173 TIGR03217 4OH_2_O_val_ald 4-hy 97.2 0.03 6.5E-07 53.5 18.0 132 130-282 20-162 (333)
174 cd07938 DRE_TIM_HMGL 3-hydroxy 97.2 0.067 1.4E-06 49.7 19.0 144 130-282 16-168 (274)
175 PF00682 HMGL-like: HMGL-like 97.0 0.011 2.5E-07 53.4 12.3 143 131-282 11-156 (237)
176 KOG2535 RNA polymerase II elon 97.0 0.096 2.1E-06 49.2 17.5 120 189-313 230-361 (554)
177 PRK09389 (R)-citramalate synth 96.8 0.15 3.3E-06 51.2 19.5 141 130-282 20-162 (488)
178 PRK00915 2-isopropylmalate syn 96.8 0.22 4.7E-06 50.5 20.1 144 130-282 22-168 (513)
179 cd07937 DRE_TIM_PC_TC_5S Pyruv 96.7 0.22 4.8E-06 46.2 18.0 135 130-282 17-168 (275)
180 cd07941 DRE_TIM_LeuA3 Desulfob 96.6 0.43 9.4E-06 44.2 19.2 144 130-282 16-170 (273)
181 PRK09282 pyruvate carboxylase 96.5 0.17 3.8E-06 52.0 17.8 136 130-282 22-173 (592)
182 TIGR01108 oadA oxaloacetate de 96.4 0.26 5.6E-06 50.7 18.1 138 130-282 17-168 (582)
183 cd07945 DRE_TIM_CMS Leptospira 96.4 0.17 3.7E-06 47.1 15.1 139 130-282 15-166 (280)
184 PRK08091 ribulose-phosphate 3- 96.2 0.27 6E-06 44.2 15.0 129 132-288 23-151 (228)
185 PRK12331 oxaloacetate decarbox 96.2 0.32 7E-06 48.3 16.8 136 130-282 22-173 (448)
186 PRK12330 oxaloacetate decarbox 96.1 0.24 5.2E-06 49.7 15.7 136 129-282 22-174 (499)
187 PRK14041 oxaloacetate decarbox 96.1 0.29 6.3E-06 48.8 16.3 136 130-282 21-172 (467)
188 TIGR00973 leuA_bact 2-isopropy 96.1 0.68 1.5E-05 46.7 19.2 141 130-282 19-165 (494)
189 PRK14040 oxaloacetate decarbox 95.9 0.34 7.4E-06 49.9 16.2 138 130-282 23-174 (593)
190 TIGR00977 LeuA_rel 2-isopropyl 95.7 2.4 5.2E-05 43.2 21.0 144 130-282 19-173 (526)
191 PRK12581 oxaloacetate decarbox 95.6 0.51 1.1E-05 47.0 15.4 138 130-282 31-182 (468)
192 PRK12344 putative alpha-isopro 95.6 1.4 3.1E-05 44.8 18.8 145 129-282 22-177 (524)
193 PF04481 DUF561: Protein of un 95.5 1.1 2.4E-05 39.7 15.2 128 131-282 24-151 (242)
194 PRK14024 phosphoribosyl isomer 95.2 1.3 2.8E-05 40.3 15.7 131 135-283 33-166 (241)
195 PRK14042 pyruvate carboxylase 95.1 0.77 1.7E-05 47.2 15.1 138 130-282 22-173 (596)
196 PRK14057 epimerase; Provisiona 95.0 1.3 2.8E-05 40.5 14.8 129 132-288 30-165 (254)
197 cd04731 HisF The cyclase subun 94.9 1 2.2E-05 40.8 14.2 132 133-283 26-169 (243)
198 COG0119 LeuA Isopropylmalate/h 94.9 1.8 3.8E-05 42.6 16.5 141 130-282 20-165 (409)
199 PRK08883 ribulose-phosphate 3- 94.8 2.1 4.5E-05 38.4 15.6 153 132-315 10-165 (220)
200 PLN03228 methylthioalkylmalate 94.8 3 6.5E-05 42.1 18.2 140 130-282 102-258 (503)
201 PRK08745 ribulose-phosphate 3- 94.3 3.6 7.7E-05 37.0 15.8 128 132-288 14-143 (223)
202 TIGR01303 IMP_DH_rel_1 IMP deh 94.3 1.7 3.7E-05 43.6 15.1 135 134-286 224-360 (475)
203 PRK15452 putative protease; Pr 94.3 4 8.7E-05 40.6 17.5 118 138-283 14-141 (443)
204 PRK06806 fructose-bisphosphate 94.2 4.7 0.0001 37.5 17.6 170 132-322 27-207 (281)
205 TIGR01182 eda Entner-Doudoroff 94.1 2.6 5.7E-05 37.3 14.2 111 132-283 18-128 (204)
206 PRK06015 keto-hydroxyglutarate 94.0 3.7 8E-05 36.2 14.9 111 132-283 14-124 (201)
207 PF01081 Aldolase: KDPG and KH 93.9 1.8 3.8E-05 38.1 12.8 112 131-283 17-128 (196)
208 PRK07807 inosine 5-monophospha 93.7 1.7 3.6E-05 43.7 13.9 135 134-286 226-362 (479)
209 COG0159 TrpA Tryptophan syntha 93.7 2.7 5.8E-05 38.6 13.9 54 227-282 74-128 (265)
210 PRK06552 keto-hydroxyglutarate 93.5 3.8 8.3E-05 36.5 14.5 111 132-283 23-136 (213)
211 TIGR03572 WbuZ glycosyl amidat 93.2 4.8 0.0001 36.1 15.0 163 134-323 30-205 (232)
212 TIGR01496 DHPS dihydropteroate 93.2 6 0.00013 36.3 15.7 76 131-211 20-100 (257)
213 PRK11572 copper homeostasis pr 93.2 6.7 0.00014 35.8 15.7 124 135-283 74-198 (248)
214 PRK07114 keto-hydroxyglutarate 93.0 5.9 0.00013 35.5 14.8 115 132-283 25-139 (222)
215 TIGR00735 hisF imidazoleglycer 92.9 6.4 0.00014 36.0 15.5 129 134-283 30-175 (254)
216 cd00950 DHDPS Dihydrodipicolin 92.8 2.9 6.2E-05 38.8 13.2 77 197-283 25-102 (284)
217 cd00739 DHPS DHPS subgroup of 92.6 4.7 0.0001 37.1 14.1 77 130-211 20-101 (257)
218 PRK00748 1-(5-phosphoribosyl)- 92.6 2.8 6E-05 37.6 12.5 129 134-282 30-165 (233)
219 KOG2550 IMP dehydrogenase/GMP 92.6 0.88 1.9E-05 44.0 9.3 132 137-286 253-386 (503)
220 PRK13585 1-(5-phosphoribosyl)- 92.6 5.5 0.00012 35.9 14.5 131 134-283 32-169 (241)
221 PF01729 QRPTase_C: Quinolinat 92.5 0.59 1.3E-05 40.1 7.5 66 138-214 91-156 (169)
222 cd07947 DRE_TIM_Re_CS Clostrid 92.5 5 0.00011 37.3 14.2 136 131-282 18-169 (279)
223 cd04732 HisA HisA. Phosphorib 92.4 3.1 6.8E-05 37.2 12.6 132 133-283 28-166 (234)
224 cd00945 Aldolase_Class_I Class 92.4 6.6 0.00014 33.7 15.3 129 132-282 11-148 (201)
225 COG5016 Pyruvate/oxaloacetate 92.3 0.98 2.1E-05 43.7 9.3 137 130-283 24-176 (472)
226 TIGR03249 KdgD 5-dehydro-4-deo 92.3 3.8 8.3E-05 38.4 13.4 76 197-282 30-105 (296)
227 COG1856 Uncharacterized homolo 92.3 6 0.00013 35.4 13.4 137 138-282 101-251 (275)
228 PF00834 Ribul_P_3_epim: Ribul 92.2 1.6 3.4E-05 38.6 10.0 153 132-316 10-165 (201)
229 COG0826 Collagenase and relate 92.1 1.2 2.7E-05 42.7 10.0 90 186-283 8-99 (347)
230 PRK05718 keto-hydroxyglutarate 92.1 7.9 0.00017 34.5 14.4 68 131-210 24-91 (212)
231 PRK01033 imidazole glycerol ph 92.1 9.5 0.00021 35.0 16.1 132 133-283 29-172 (258)
232 PRK05265 pyridoxine 5'-phospha 92.0 9 0.0002 34.6 14.8 159 135-318 25-187 (239)
233 PLN02321 2-isopropylmalate syn 92.0 9.6 0.00021 39.7 16.8 145 130-282 104-259 (632)
234 cd00452 KDPG_aldolase KDPG and 92.0 5.5 0.00012 34.6 13.2 111 132-283 14-124 (190)
235 PRK09722 allulose-6-phosphate 91.9 9.3 0.0002 34.5 15.8 128 132-288 13-141 (229)
236 PRK08195 4-hyroxy-2-oxovalerat 91.9 4.1 8.9E-05 39.0 13.2 79 131-213 141-221 (337)
237 COG0685 MetF 5,10-methylenetet 91.8 5.1 0.00011 37.5 13.5 111 131-258 89-210 (291)
238 cd00954 NAL N-Acetylneuraminic 91.8 6.6 0.00014 36.6 14.3 76 197-282 25-102 (288)
239 PRK08005 epimerase; Validated 91.8 9.1 0.0002 34.1 16.1 128 132-288 11-139 (210)
240 PRK09195 gatY tagatose-bisphos 91.7 11 0.00025 35.1 15.6 136 133-282 28-174 (284)
241 PRK06843 inosine 5-monophospha 91.6 7.5 0.00016 38.1 14.8 134 135-286 153-288 (404)
242 cd07942 DRE_TIM_LeuA Mycobacte 91.6 8.6 0.00019 35.9 14.7 133 131-275 20-168 (284)
243 PRK15452 putative protease; Pr 91.5 1.6 3.5E-05 43.4 10.2 90 186-283 5-96 (443)
244 PRK02083 imidazole glycerol ph 91.4 11 0.00024 34.3 15.3 76 133-214 29-104 (253)
245 cd02810 DHOD_DHPD_FMN Dihydroo 91.4 2.6 5.7E-05 39.1 11.2 114 164-284 80-197 (289)
246 TIGR00674 dapA dihydrodipicoli 91.4 5.6 0.00012 37.0 13.4 76 197-282 23-99 (285)
247 PRK05096 guanosine 5'-monophos 91.1 3.4 7.5E-05 39.3 11.4 130 139-286 112-245 (346)
248 PRK12738 kbaY tagatose-bisphos 91.1 13 0.00029 34.7 16.4 137 132-282 27-174 (286)
249 PRK03170 dihydrodipicolinate s 91.0 6.5 0.00014 36.6 13.5 76 197-282 26-102 (292)
250 PF00478 IMPDH: IMP dehydrogen 90.8 5.6 0.00012 38.2 12.8 133 136-286 109-243 (352)
251 PRK05848 nicotinate-nucleotide 90.7 1.8 3.8E-05 40.2 9.1 67 137-214 192-258 (273)
252 PRK07896 nicotinate-nucleotide 90.7 1.9 4.1E-05 40.3 9.4 67 137-214 209-275 (289)
253 PRK12737 gatY tagatose-bisphos 90.7 14 0.00031 34.4 15.7 137 132-282 27-174 (284)
254 TIGR00007 phosphoribosylformim 90.7 6.7 0.00015 35.0 12.8 131 134-283 28-165 (230)
255 cd00408 DHDPS-like Dihydrodipi 90.6 7.3 0.00016 36.0 13.4 77 196-282 21-98 (281)
256 PRK07535 methyltetrahydrofolat 90.6 11 0.00023 34.8 14.1 135 131-275 22-186 (261)
257 COG0800 Eda 2-keto-3-deoxy-6-p 90.4 6.6 0.00014 34.8 11.9 112 131-283 22-133 (211)
258 PTZ00170 D-ribulose-5-phosphat 90.3 4.1 8.9E-05 36.7 11.0 101 132-252 17-119 (228)
259 TIGR02313 HpaI-NOT-DapA 2,4-di 90.3 9.9 0.00021 35.6 14.0 76 197-282 25-101 (294)
260 TIGR00676 fadh2 5,10-methylene 90.3 6.5 0.00014 36.4 12.6 127 131-277 70-210 (272)
261 PTZ00314 inosine-5'-monophosph 90.3 11 0.00024 38.1 15.1 132 135-286 241-376 (495)
262 PRK07428 nicotinate-nucleotide 90.2 2.3 5E-05 39.7 9.5 67 137-214 206-272 (288)
263 COG0107 HisF Imidazoleglycerol 90.1 2.4 5.3E-05 38.0 8.9 79 132-216 28-106 (256)
264 TIGR01334 modD putative molybd 90.0 2.4 5.2E-05 39.4 9.3 66 137-213 198-263 (277)
265 PRK06801 hypothetical protein; 89.9 17 0.00037 34.0 15.7 137 132-282 27-175 (286)
266 PLN02540 methylenetetrahydrofo 89.8 8.4 0.00018 39.4 13.7 51 131-181 70-126 (565)
267 TIGR00677 fadh2_euk methylenet 89.7 8 0.00017 36.0 12.7 110 132-258 72-196 (281)
268 TIGR01305 GMP_reduct_1 guanosi 89.5 5.9 0.00013 37.7 11.6 131 138-286 110-244 (343)
269 TIGR00640 acid_CoA_mut_C methy 89.3 5.1 0.00011 32.8 9.9 67 138-212 44-111 (132)
270 PRK13111 trpA tryptophan synth 89.3 11 0.00024 34.7 13.1 23 151-179 16-38 (258)
271 PRK11613 folP dihydropteroate 89.2 19 0.00041 33.6 16.3 137 131-275 35-207 (282)
272 cd00537 MTHFR Methylenetetrahy 89.2 6.3 0.00014 36.4 11.7 117 132-265 71-204 (274)
273 PRK06096 molybdenum transport 89.1 3 6.5E-05 38.9 9.3 66 137-213 199-264 (284)
274 PRK13586 1-(5-phosphoribosyl)- 89.1 15 0.00033 33.1 13.7 129 134-282 30-165 (232)
275 PRK04147 N-acetylneuraminate l 89.1 13 0.00029 34.6 13.8 50 230-282 55-105 (293)
276 TIGR03128 RuMP_HxlA 3-hexulose 89.0 8.9 0.00019 33.6 12.1 122 132-283 10-133 (206)
277 PRK08385 nicotinate-nucleotide 89.0 3.4 7.4E-05 38.4 9.5 67 137-214 192-260 (278)
278 PF00809 Pterin_bind: Pterin b 88.9 4.4 9.6E-05 35.9 10.0 75 133-211 18-97 (210)
279 PRK12999 pyruvate carboxylase; 88.9 35 0.00077 38.3 18.8 137 131-282 552-710 (1146)
280 TIGR01858 tag_bisphos_ald clas 88.7 20 0.00044 33.3 15.9 137 132-282 25-172 (282)
281 PF01136 Peptidase_U32: Peptid 88.7 2.3 5E-05 38.1 8.2 69 134-216 2-70 (233)
282 PF00977 His_biosynth: Histidi 88.7 4.9 0.00011 36.2 10.2 132 133-283 28-167 (229)
283 TIGR00262 trpA tryptophan synt 88.6 14 0.0003 33.9 13.3 83 132-214 22-123 (256)
284 PLN02617 imidazole glycerol ph 88.4 30 0.00064 35.4 16.6 85 131-218 264-359 (538)
285 TIGR00284 dihydropteroate synt 88.3 15 0.00033 37.1 14.2 127 134-273 165-304 (499)
286 PRK03620 5-dehydro-4-deoxygluc 88.2 9.6 0.00021 35.8 12.3 76 197-282 32-107 (303)
287 PRK12290 thiE thiamine-phospha 88.2 15 0.00033 36.3 13.8 134 138-312 221-355 (437)
288 COG0269 SgbH 3-hexulose-6-phos 88.1 16 0.00036 32.4 12.7 122 132-283 14-137 (217)
289 PF00682 HMGL-like: HMGL-like 88.0 3.9 8.4E-05 36.7 9.3 82 131-216 134-216 (237)
290 TIGR02146 LysS_fung_arch homoc 88.0 24 0.00053 33.4 18.3 140 131-282 17-158 (344)
291 TIGR01302 IMP_dehydrog inosine 88.0 14 0.0003 36.9 13.8 134 135-286 224-359 (450)
292 PRK05692 hydroxymethylglutaryl 87.9 3.6 7.8E-05 38.4 9.1 82 131-216 152-234 (287)
293 cd04724 Tryptophan_synthase_al 87.8 5.3 0.00011 36.3 10.0 80 132-212 12-110 (242)
294 TIGR03849 arch_ComA phosphosul 87.6 21 0.00046 32.3 13.4 114 148-282 25-153 (237)
295 cd00951 KDGDH 5-dehydro-4-deox 87.6 11 0.00025 35.0 12.3 50 230-282 51-100 (289)
296 cd07945 DRE_TIM_CMS Leptospira 87.5 4.9 0.00011 37.4 9.7 122 132-274 145-267 (280)
297 PLN02746 hydroxymethylglutaryl 87.4 9 0.0002 36.8 11.6 81 131-216 194-276 (347)
298 cd04723 HisA_HisF Phosphoribos 87.4 7.2 0.00016 35.2 10.5 78 133-217 34-111 (233)
299 TIGR00683 nanA N-acetylneurami 87.4 11 0.00023 35.3 12.0 14 230-243 81-94 (290)
300 PRK13587 1-(5-phosphoribosyl)- 87.3 20 0.00043 32.3 13.3 128 134-282 31-167 (234)
301 PRK05835 fructose-bisphosphate 87.3 27 0.00058 33.0 16.9 173 132-321 26-210 (307)
302 TIGR01769 GGGP geranylgeranylg 87.3 14 0.00031 32.7 12.0 96 103-213 107-205 (205)
303 cd02071 MM_CoA_mut_B12_BD meth 87.2 8.2 0.00018 30.9 9.7 67 138-212 41-108 (122)
304 TIGR00559 pdxJ pyridoxine 5'-p 87.1 23 0.00049 32.0 15.7 129 135-283 22-151 (237)
305 cd07943 DRE_TIM_HOA 4-hydroxy- 87.0 16 0.00035 33.5 12.8 79 131-213 138-217 (263)
306 COG0329 DapA Dihydrodipicolina 86.9 13 0.00027 35.0 12.2 76 197-282 29-105 (299)
307 cd00952 CHBPH_aldolase Trans-o 86.6 20 0.00043 33.8 13.5 76 197-282 33-109 (309)
308 cd07938 DRE_TIM_HMGL 3-hydroxy 86.5 5 0.00011 37.2 9.2 80 132-215 147-227 (274)
309 PRK12857 fructose-1,6-bisphosp 86.3 29 0.00062 32.4 15.8 137 132-282 27-174 (284)
310 PRK05567 inosine 5'-monophosph 86.3 20 0.00044 36.1 14.1 131 136-286 229-363 (486)
311 PRK09140 2-dehydro-3-deoxy-6-p 86.3 19 0.00041 31.9 12.3 110 132-282 20-130 (206)
312 cd07941 DRE_TIM_LeuA3 Desulfob 86.3 6 0.00013 36.6 9.6 79 132-214 149-228 (273)
313 PF00701 DHDPS: Dihydrodipicol 86.1 12 0.00027 34.7 11.7 76 197-282 26-102 (289)
314 cd04824 eu_ALAD_PBGS_cysteine_ 86.1 11 0.00024 35.4 10.9 60 126-185 43-110 (320)
315 PF03740 PdxJ: Pyridoxal phosp 86.0 26 0.00056 31.8 13.0 128 136-283 24-152 (239)
316 TIGR01235 pyruv_carbox pyruvat 85.8 15 0.00032 41.1 13.6 137 131-282 550-708 (1143)
317 PRK13111 trpA tryptophan synth 85.4 19 0.00041 33.1 12.3 122 136-284 106-229 (258)
318 PLN02591 tryptophan synthase 85.3 27 0.00059 31.9 13.1 124 135-286 94-221 (250)
319 TIGR01859 fruc_bis_ald_ fructo 85.2 32 0.0007 32.0 16.7 135 132-282 25-172 (282)
320 PRK05265 pyridoxine 5'-phospha 85.2 14 0.0003 33.4 10.8 133 134-286 76-216 (239)
321 cd00423 Pterin_binding Pterin 85.1 30 0.00066 31.6 14.7 76 131-211 21-101 (258)
322 TIGR00559 pdxJ pyridoxine 5'-p 85.0 15 0.00032 33.2 10.9 134 134-286 73-215 (237)
323 PRK07998 gatY putative fructos 84.8 34 0.00074 31.9 14.4 136 133-282 28-172 (283)
324 PRK07709 fructose-bisphosphate 84.6 35 0.00075 31.9 17.9 138 132-282 27-175 (285)
325 PRK08185 hypothetical protein; 84.6 35 0.00075 31.8 16.2 136 132-282 22-168 (283)
326 PF01116 F_bP_aldolase: Fructo 84.5 21 0.00045 33.4 12.3 173 132-322 26-212 (287)
327 CHL00200 trpA tryptophan synth 84.5 29 0.00062 32.0 13.1 124 135-286 107-234 (263)
328 cd00377 ICL_PEPM Members of th 84.4 32 0.00069 31.3 14.8 140 140-282 22-179 (243)
329 cd00331 IGPS Indole-3-glycerol 84.4 28 0.00062 30.7 15.4 120 132-283 29-148 (217)
330 PLN02417 dihydrodipicolinate s 84.4 18 0.0004 33.5 11.9 14 230-243 81-94 (280)
331 PRK10550 tRNA-dihydrouridine s 84.3 38 0.00082 32.0 14.5 137 131-284 72-225 (312)
332 cd03174 DRE_TIM_metallolyase D 84.3 7.3 0.00016 35.4 9.2 80 131-214 143-223 (265)
333 KOG2368 Hydroxymethylglutaryl- 84.3 21 0.00045 32.1 11.2 147 137-292 43-199 (316)
334 PF05853 DUF849: Prokaryotic p 84.1 7 0.00015 36.2 8.9 86 129-214 21-109 (272)
335 PRK14114 1-(5-phosphoribosyl)- 83.9 6.8 0.00015 35.6 8.6 129 133-283 29-164 (241)
336 COG3142 CutC Uncharacterized p 83.8 30 0.00066 31.1 12.2 124 136-282 75-199 (241)
337 cd07940 DRE_TIM_IPMS 2-isoprop 83.7 8.4 0.00018 35.5 9.3 80 131-214 140-222 (268)
338 TIGR03217 4OH_2_O_val_ald 4-hy 83.7 24 0.00052 33.7 12.6 80 131-214 140-221 (333)
339 PF06180 CbiK: Cobalt chelatas 83.5 10 0.00023 34.9 9.7 99 168-274 19-133 (262)
340 PRK08318 dihydropyrimidine deh 83.4 37 0.00079 33.5 14.3 140 133-283 112-282 (420)
341 PRK12330 oxaloacetate decarbox 83.3 10 0.00023 38.2 10.3 80 131-214 152-233 (499)
342 cd06556 ICL_KPHMT Members of t 83.2 12 0.00027 33.9 9.9 87 195-282 21-108 (240)
343 cd07939 DRE_TIM_NifV Streptomy 83.1 9.8 0.00021 34.8 9.4 100 131-240 136-236 (259)
344 PLN02591 tryptophan synthase 83.0 17 0.00037 33.3 10.8 22 261-282 116-137 (250)
345 cd00003 PNPsynthase Pyridoxine 82.9 18 0.0004 32.5 10.6 105 166-286 109-214 (234)
346 PRK05581 ribulose-phosphate 3- 82.7 33 0.00071 30.1 13.7 77 132-213 14-91 (220)
347 TIGR01163 rpe ribulose-phospha 82.7 32 0.00069 29.9 12.6 98 131-250 8-107 (210)
348 PF06180 CbiK: Cobalt chelatas 82.6 4 8.6E-05 37.6 6.5 172 134-318 58-236 (262)
349 TIGR00262 trpA tryptophan synt 82.5 16 0.00035 33.5 10.6 22 152-179 15-36 (256)
350 cd00959 DeoC 2-deoxyribose-5-p 82.4 34 0.00073 30.0 15.7 151 131-312 14-172 (203)
351 COG0042 tRNA-dihydrouridine sy 82.2 41 0.00089 32.0 13.5 137 131-284 76-229 (323)
352 PRK09432 metF 5,10-methylenete 82.1 16 0.00035 34.2 10.6 110 131-258 94-211 (296)
353 cd00381 IMPDH IMPDH: The catal 82.1 13 0.00029 35.3 10.2 133 136-286 95-229 (325)
354 cd02812 PcrB_like PcrB_like pr 82.1 27 0.00059 31.2 11.5 96 101-213 108-204 (219)
355 PF03932 CutC: CutC family; I 82.1 6.9 0.00015 34.5 7.6 122 135-282 73-198 (201)
356 TIGR01768 GGGP-family geranylg 82.0 30 0.00065 31.1 11.7 95 103-213 109-208 (223)
357 cd04724 Tryptophan_synthase_al 81.9 23 0.00051 32.1 11.3 45 261-321 114-160 (242)
358 PF01207 Dus: Dihydrouridine s 81.7 10 0.00023 35.7 9.3 118 197-322 70-190 (309)
359 PRK07259 dihydroorotate dehydr 81.5 30 0.00065 32.3 12.3 82 197-284 108-190 (301)
360 cd00003 PNPsynthase Pyridoxine 81.4 41 0.00088 30.4 15.6 129 135-283 22-151 (234)
361 COG5016 Pyruvate/oxaloacetate 81.4 34 0.00075 33.4 12.4 127 132-281 95-229 (472)
362 PF02219 MTHFR: Methylenetetra 81.2 13 0.00028 34.6 9.6 109 132-255 83-208 (287)
363 COG2185 Sbm Methylmalonyl-CoA 81.2 30 0.00066 28.7 11.3 71 131-211 50-120 (143)
364 PRK06106 nicotinate-nucleotide 81.1 8.3 0.00018 35.9 8.1 64 137-214 204-267 (281)
365 PRK02227 hypothetical protein; 81.1 43 0.00092 30.4 13.6 165 128-312 61-234 (238)
366 PRK13125 trpA tryptophan synth 81.0 32 0.00069 31.2 11.9 69 167-243 170-238 (244)
367 PRK13384 delta-aminolevulinic 81.0 17 0.00038 34.1 10.0 57 127-185 54-117 (322)
368 PRK14041 oxaloacetate decarbox 80.9 43 0.00093 33.6 13.6 79 132-215 151-230 (467)
369 CHL00200 trpA tryptophan synth 80.9 18 0.0004 33.3 10.3 51 259-324 127-178 (263)
370 KOG0564 5,10-methylenetetrahyd 80.6 10 0.00023 37.7 8.8 120 132-268 90-228 (590)
371 PF03740 PdxJ: Pyridoxal phosp 80.5 6.5 0.00014 35.5 6.9 134 134-286 74-217 (239)
372 TIGR02320 PEP_mutase phosphoen 80.4 17 0.00036 34.0 9.9 76 133-216 168-243 (285)
373 cd07937 DRE_TIM_PC_TC_5S Pyruv 80.3 15 0.00032 34.1 9.6 79 131-214 146-225 (275)
374 PF01244 Peptidase_M19: Membra 80.3 29 0.00062 33.0 11.7 163 138-318 121-303 (320)
375 TIGR01037 pyrD_sub1_fam dihydr 80.2 31 0.00067 32.2 11.9 81 197-283 107-189 (300)
376 TIGR03572 WbuZ glycosyl amidat 80.1 9.9 0.00022 34.0 8.2 75 133-213 152-227 (232)
377 cd01568 QPRTase_NadC Quinolina 80.0 12 0.00026 34.6 8.8 64 138-213 192-255 (269)
378 PRK12581 oxaloacetate decarbox 80.0 57 0.0012 32.7 14.0 79 132-215 161-240 (468)
379 cd01299 Met_dep_hydrolase_A Me 79.9 53 0.0011 30.9 13.6 76 132-213 118-200 (342)
380 TIGR01108 oadA oxaloacetate de 79.5 48 0.001 34.3 13.7 98 132-239 147-245 (582)
381 KOG4175 Tryptophan synthase al 79.4 44 0.00095 29.5 12.7 49 228-279 76-126 (268)
382 cd01573 modD_like ModD; Quinol 79.4 15 0.00033 34.0 9.3 65 138-213 194-258 (272)
383 PLN02446 (5-phosphoribosyl)-5- 79.4 12 0.00026 34.4 8.5 130 134-283 43-183 (262)
384 COG2513 PrpB PEP phosphonomuta 79.3 54 0.0012 30.5 17.5 141 140-282 31-185 (289)
385 cd07944 DRE_TIM_HOA_like 4-hyd 79.1 16 0.00034 33.8 9.3 79 131-213 135-215 (266)
386 KOG3111 D-ribulose-5-phosphate 78.9 21 0.00046 31.2 9.2 80 132-216 15-97 (224)
387 COG4822 CbiK Cobalamin biosynt 78.7 48 0.001 29.6 12.0 181 136-339 62-253 (265)
388 COG0157 NadC Nicotinate-nucleo 78.6 15 0.00033 33.9 8.8 66 137-214 198-263 (280)
389 PF01261 AP_endonuc_2: Xylose 78.6 17 0.00037 31.2 9.1 76 199-283 1-91 (213)
390 TIGR00970 leuA_yeast 2-isoprop 78.6 85 0.0019 32.3 18.4 137 130-278 44-199 (564)
391 cd00953 KDG_aldolase KDG (2-ke 78.5 11 0.00024 34.9 8.2 80 130-212 16-97 (279)
392 TIGR01370 cysRS possible cyste 78.4 32 0.00069 32.6 11.2 53 197-249 151-208 (315)
393 cd00947 TBP_aldolase_IIB Tagat 78.4 58 0.0012 30.3 17.3 138 132-283 22-168 (276)
394 PRK06978 nicotinate-nucleotide 78.2 13 0.00028 34.8 8.4 64 137-214 215-278 (294)
395 PRK09016 quinolinate phosphori 78.1 13 0.00028 34.9 8.4 63 137-213 218-280 (296)
396 COG3623 SgaU Putative L-xylulo 78.1 12 0.00026 33.8 7.6 83 195-282 20-115 (287)
397 PRK13399 fructose-1,6-bisphosp 78.1 67 0.0015 30.9 15.7 180 132-322 27-233 (347)
398 COG0191 Fba Fructose/tagatose 77.7 61 0.0013 30.2 17.1 134 133-282 28-175 (286)
399 PRK06559 nicotinate-nucleotide 77.7 15 0.00032 34.4 8.6 64 137-214 207-270 (290)
400 TIGR00696 wecB_tagA_cpsF bacte 77.6 24 0.00053 30.4 9.5 73 134-216 35-110 (177)
401 TIGR00735 hisF imidazoleglycer 77.5 23 0.0005 32.3 9.9 99 133-250 154-253 (254)
402 PLN02334 ribulose-phosphate 3- 77.5 19 0.00042 32.2 9.3 73 138-213 129-202 (229)
403 KOG3111 D-ribulose-5-phosphate 77.5 39 0.00084 29.6 10.3 83 148-243 135-218 (224)
404 PRK04128 1-(5-phosphoribosyl)- 77.5 39 0.00084 30.4 11.1 76 135-217 31-106 (228)
405 PRK09282 pyruvate carboxylase 77.5 69 0.0015 33.2 14.2 80 132-216 152-232 (592)
406 PRK07107 inosine 5-monophospha 77.4 16 0.00035 37.0 9.5 135 134-286 241-384 (502)
407 COG2875 CobM Precorrin-4 methy 77.3 56 0.0012 29.6 11.7 46 129-179 57-102 (254)
408 cd04823 ALAD_PBGS_aspartate_ri 76.8 23 0.00051 33.3 9.6 60 126-185 46-112 (320)
409 PF04476 DUF556: Protein of un 76.7 58 0.0013 29.4 15.7 164 128-310 61-233 (235)
410 TIGR00737 nifR3_yhdG putative 76.7 50 0.0011 31.1 12.3 138 131-284 72-223 (319)
411 PRK08610 fructose-bisphosphate 76.7 66 0.0014 30.1 16.9 140 132-283 27-176 (286)
412 PRK12331 oxaloacetate decarbox 76.5 41 0.0009 33.5 12.0 81 131-216 151-232 (448)
413 PRK13210 putative L-xylulose 5 76.5 21 0.00046 32.7 9.5 82 196-282 19-113 (284)
414 TIGR00167 cbbA ketose-bisphosp 76.1 69 0.0015 30.0 16.7 139 132-283 27-178 (288)
415 TIGR00007 phosphoribosylformim 75.9 14 0.0003 33.0 7.8 74 134-213 145-218 (230)
416 PRK07565 dihydroorotate dehydr 75.8 27 0.00058 33.3 10.2 113 164-285 84-199 (334)
417 PRK14847 hypothetical protein; 75.8 76 0.0017 30.3 19.3 135 130-279 50-204 (333)
418 PRK14040 oxaloacetate decarbox 75.7 69 0.0015 33.3 13.6 98 132-239 153-251 (593)
419 cd03412 CbiK_N Anaerobic cobal 75.4 42 0.0009 27.1 10.1 96 166-273 16-124 (127)
420 cd04740 DHOD_1B_like Dihydroor 75.3 33 0.00071 31.9 10.5 82 197-284 106-187 (296)
421 COG0106 HisA Phosphoribosylfor 75.2 17 0.00036 33.0 7.9 132 132-283 29-167 (241)
422 COG0036 Rpe Pentose-5-phosphat 75.2 61 0.0013 29.0 16.6 124 132-283 14-138 (220)
423 PF03808 Glyco_tran_WecB: Glyc 75.2 36 0.00078 29.0 9.9 71 137-216 38-111 (172)
424 TIGR02320 PEP_mutase phosphoen 75.1 73 0.0016 29.8 14.6 133 147-282 38-188 (285)
425 cd00953 KDG_aldolase KDG (2-ke 74.8 23 0.00049 32.8 9.2 44 229-274 75-120 (279)
426 PF02679 ComA: (2R)-phospho-3- 74.8 19 0.0004 32.8 8.3 114 148-282 38-166 (244)
427 PRK06543 nicotinate-nucleotide 74.7 18 0.0004 33.6 8.4 64 137-214 203-266 (281)
428 PRK05742 nicotinate-nucleotide 74.7 19 0.00041 33.5 8.5 64 137-214 199-262 (277)
429 PRK02261 methylaspartate mutas 74.6 46 0.001 27.3 11.9 73 132-212 42-118 (137)
430 PRK01130 N-acetylmannosamine-6 74.4 62 0.0013 28.6 12.5 125 138-285 79-204 (221)
431 PRK00278 trpC indole-3-glycero 74.3 71 0.0015 29.3 14.4 119 133-283 69-187 (260)
432 PRK13125 trpA tryptophan synth 74.2 68 0.0015 29.0 15.4 127 135-286 89-217 (244)
433 PLN02424 ketopantoate hydroxym 74.1 63 0.0014 30.8 11.8 85 195-282 44-133 (332)
434 PRK09196 fructose-1,6-bisphosp 74.0 87 0.0019 30.1 16.3 180 132-322 27-233 (347)
435 PLN02274 inosine-5'-monophosph 73.9 22 0.00047 36.1 9.4 134 135-286 248-383 (505)
436 COG0269 SgbH 3-hexulose-6-phos 73.8 66 0.0014 28.7 13.9 122 139-286 72-195 (217)
437 PRK07315 fructose-bisphosphate 73.7 80 0.0017 29.6 15.6 134 132-283 27-173 (293)
438 PLN02495 oxidoreductase, actin 73.7 47 0.001 32.4 11.3 117 164-286 95-217 (385)
439 PRK07565 dihydroorotate dehydr 73.7 84 0.0018 29.9 13.8 169 132-319 112-298 (334)
440 COG1105 FruK Fructose-1-phosph 73.5 83 0.0018 29.7 13.8 104 131-249 111-216 (310)
441 PRK07259 dihydroorotate dehydr 73.3 56 0.0012 30.5 11.6 168 132-320 102-293 (301)
442 COG1625 Fe-S oxidoreductase, r 73.3 21 0.00045 34.9 8.6 103 110-213 82-211 (414)
443 cd02801 DUS_like_FMN Dihydrour 73.2 40 0.00086 29.8 10.2 85 197-283 71-158 (231)
444 PF02581 TMP-TENI: Thiamine mo 73.2 58 0.0013 27.8 11.5 117 133-292 11-130 (180)
445 cd03319 L-Ala-DL-Glu_epimerase 73.2 82 0.0018 29.5 13.9 148 132-321 134-285 (316)
446 cd00408 DHDPS-like Dihydrodipi 73.2 21 0.00044 33.0 8.5 80 130-212 14-98 (281)
447 cd02931 ER_like_FMN Enoate red 73.0 7.9 0.00017 37.7 5.9 80 197-282 154-271 (382)
448 PRK10415 tRNA-dihydrouridine s 72.9 17 0.00036 34.6 7.9 74 135-213 150-224 (321)
449 PRK05437 isopentenyl pyrophosp 72.9 92 0.002 30.0 13.8 133 137-283 80-217 (352)
450 TIGR00126 deoC deoxyribose-pho 72.8 69 0.0015 28.5 20.0 154 130-312 14-173 (211)
451 cd02930 DCR_FMN 2,4-dienoyl-Co 72.6 33 0.00072 32.9 10.0 86 197-283 141-244 (353)
452 cd04731 HisF The cyclase subun 72.5 37 0.00081 30.5 9.9 75 133-213 148-223 (243)
453 PLN02334 ribulose-phosphate 3- 72.5 71 0.0015 28.5 14.9 127 134-290 20-152 (229)
454 PRK06294 coproporphyrinogen II 72.4 59 0.0013 31.5 11.8 17 227-243 165-181 (370)
455 cd02810 DHOD_DHPD_FMN Dihydroo 72.4 27 0.00059 32.3 9.2 79 133-213 175-272 (289)
456 PRK01254 hypothetical protein; 72.4 74 0.0016 33.4 12.7 106 134-249 468-588 (707)
457 cd07948 DRE_TIM_HCS Saccharomy 72.2 33 0.00071 31.6 9.5 76 133-213 140-216 (262)
458 PRK13209 L-xylulose 5-phosphat 72.2 39 0.00085 30.9 10.2 19 196-214 24-42 (283)
459 cd04739 DHOD_like Dihydroorota 72.0 92 0.002 29.6 15.6 167 132-317 110-294 (325)
460 PRK09517 multifunctional thiam 71.8 91 0.002 33.4 13.9 140 135-312 20-163 (755)
461 PRK14042 pyruvate carboxylase 71.7 90 0.002 32.4 13.3 81 131-216 151-232 (596)
462 cd00952 CHBPH_aldolase Trans-o 71.6 21 0.00047 33.6 8.3 80 130-212 25-109 (309)
463 PF01729 QRPTase_C: Quinolinat 71.6 57 0.0012 27.9 10.2 89 169-283 66-155 (169)
464 cd04735 OYE_like_4_FMN Old yel 71.4 10 0.00022 36.5 6.1 25 259-283 231-255 (353)
465 PLN02716 nicotinate-nucleotide 71.3 22 0.00047 33.6 8.0 71 137-214 213-291 (308)
466 COG0352 ThiE Thiamine monophos 71.2 75 0.0016 28.3 14.6 154 114-310 2-156 (211)
467 PRK13585 1-(5-phosphoribosyl)- 71.2 22 0.00047 32.0 8.0 73 135-213 150-222 (241)
468 cd04735 OYE_like_4_FMN Old yel 71.1 17 0.00037 35.0 7.6 81 131-213 232-313 (353)
469 cd02803 OYE_like_FMN_family Ol 71.1 22 0.00047 33.6 8.3 79 132-213 226-311 (327)
470 TIGR02313 HpaI-NOT-DapA 2,4-di 71.0 56 0.0012 30.5 10.9 79 130-212 17-101 (294)
471 cd02072 Glm_B12_BD B12 binding 70.9 56 0.0012 26.6 10.9 83 136-240 39-128 (128)
472 cd04732 HisA HisA. Phosphorib 70.9 18 0.00038 32.3 7.3 75 133-213 145-219 (234)
473 TIGR00542 hxl6Piso_put hexulos 70.9 36 0.00079 31.2 9.6 19 196-214 19-37 (279)
474 PRK05458 guanosine 5'-monophos 70.9 44 0.00095 31.9 10.2 131 136-286 98-233 (326)
475 TIGR00695 uxuA mannonate dehyd 70.8 14 0.00029 36.2 6.8 20 237-258 88-108 (394)
476 TIGR02090 LEU1_arch isopropylm 70.8 29 0.00063 33.5 9.2 79 131-214 138-217 (363)
477 cd02801 DUS_like_FMN Dihydrour 70.7 17 0.00037 32.3 7.1 74 134-213 138-213 (231)
478 TIGR01521 FruBisAldo_II_B fruc 70.5 1E+02 0.0023 29.6 16.2 183 132-322 25-231 (347)
479 cd02803 OYE_like_FMN_family Ol 70.4 35 0.00077 32.1 9.6 87 197-283 145-248 (327)
480 cd00331 IGPS Indole-3-glycerol 70.4 30 0.00066 30.5 8.7 67 140-213 134-201 (217)
481 PF00977 His_biosynth: Histidi 70.3 27 0.00058 31.3 8.3 74 134-213 147-220 (229)
482 PRK08385 nicotinate-nucleotide 70.3 93 0.002 28.9 12.1 91 168-283 168-259 (278)
483 TIGR01334 modD putative molybd 70.2 74 0.0016 29.6 11.3 90 168-283 174-263 (277)
484 PRK03170 dihydrodipicolinate s 70.2 14 0.00031 34.3 6.7 80 130-212 18-102 (292)
485 TIGR03586 PseI pseudaminic aci 69.9 1E+02 0.0023 29.3 13.4 109 132-248 15-161 (327)
486 PRK07455 keto-hydroxyglutarate 69.8 74 0.0016 27.6 14.3 110 132-282 22-131 (187)
487 PRK09283 delta-aminolevulinic 69.7 40 0.00086 31.9 9.3 57 127-185 52-115 (323)
488 PRK11858 aksA trans-homoaconit 69.7 33 0.00071 33.4 9.3 79 131-214 142-221 (378)
489 PRK13587 1-(5-phosphoribosyl)- 69.7 27 0.00059 31.5 8.2 74 134-213 148-221 (234)
490 PRK13523 NADPH dehydrogenase N 69.4 16 0.00035 34.9 7.0 80 131-213 224-305 (337)
491 PLN02858 fructose-bisphosphate 69.3 2.2E+02 0.0048 32.9 17.3 104 166-282 1155-1269(1378)
492 PLN02321 2-isopropylmalate syn 69.2 28 0.0006 36.3 9.0 79 131-214 237-320 (632)
493 cd00950 DHDPS Dihydrodipicolin 69.2 14 0.0003 34.2 6.5 81 130-213 17-102 (284)
494 COG0106 HisA Phosphoribosylfor 69.0 91 0.002 28.3 11.2 91 134-239 147-239 (241)
495 TIGR02764 spore_ybaN_pdaB poly 68.7 75 0.0016 27.2 13.0 81 189-283 103-188 (191)
496 TIGR00973 leuA_bact 2-isopropy 68.7 29 0.00062 35.1 8.9 79 131-213 143-225 (494)
497 PRK13307 bifunctional formalde 68.6 1.2E+02 0.0027 29.7 13.1 91 170-284 214-307 (391)
498 PRK09997 hydroxypyruvate isome 68.4 58 0.0013 29.5 10.3 41 169-211 17-58 (258)
499 cd06533 Glyco_transf_WecG_TagA 68.3 51 0.0011 28.0 9.3 71 137-216 36-109 (171)
500 PRK13753 dihydropteroate synth 67.8 1.1E+02 0.0023 28.6 14.1 75 131-211 22-101 (279)
No 1
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.9e-61 Score=423.83 Aligned_cols=300 Identities=66% Similarity=1.174 Sum_probs=289.5
Q ss_pred CCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCCC
Q 018731 49 DVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP 128 (351)
Q Consensus 49 ~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~~ 128 (351)
..++|.|++.+++.|+.+++++..|+...|+++|++|+||||.+||.|+.....++++|..++.|.++|+||++.+.|.+
T Consensus 57 ~~rlP~WLK~~iP~G~n~~~iK~~lr~l~L~TVCEEArCPNiGECWgG~d~~~ATATIMlmGDTCTRGCRFCsVKTsR~P 136 (360)
T KOG2672|consen 57 RLRLPPWLKTKIPLGENYNKIKKDLRELKLHTVCEEARCPNIGECWGGGDKSTATATIMLMGDTCTRGCRFCSVKTSRNP 136 (360)
T ss_pred cccCChhhcccCCCCccHHHHHHHHhhCchhhhhhhccCCchhhccCCCCCcceeEEEEeecCccccCcceeeeecCCCC
Confidence 46799999999999999999999999999999999999999999999986777899999999999999999999999988
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
.++++.|+++.+++++.+|+.+|+||++++++|+|+|..+|++.++.||++.|++-|++++|||..+.+.++.++.+|+|
T Consensus 137 pPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLD 216 (360)
T KOG2672|consen 137 PPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPEILVECLTPDFRGDLKAVEKVAKSGLD 216 (360)
T ss_pred cCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcccchhhcCccccCchHHHHHHHhcCcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
.+.||+||+.++...+||++.+|.|.+.+++.+++..|++.+++.+|+|+|||+|++.++++.+++.++|.+++++|++|
T Consensus 217 V~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~p 296 (360)
T KOG2672|consen 217 VYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQP 296 (360)
T ss_pred ceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCC
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccchHHHHHHHhhhhhhhc
Q 018731 289 TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRERAKNTV 348 (351)
Q Consensus 289 Tp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~~~~~~~~~~~~~~~~ 348 (351)
|+.++.+.++++|+.|+.|++++.++||.|+++||++||||.||++|++++|++|+.+..
T Consensus 297 tkrhl~v~eyvtpekf~~w~~~~~~lgf~y~AsgplvrSsykage~~i~~~l~~r~~~~~ 356 (360)
T KOG2672|consen 297 TKRHLKVKEYVTPEKFDYWKEYGEELGFLYVASGPLVRSSYKAGEYFIKNVLEKRKSKNS 356 (360)
T ss_pred ccccceeEEeeCHHHHHHHHHHhhhcceEEeccCceeechhhhhHHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999999999999999999999999999987644
No 2
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=100.00 E-value=5.5e-61 Score=423.25 Aligned_cols=285 Identities=56% Similarity=0.961 Sum_probs=274.8
Q ss_pred CCCCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCC
Q 018731 47 DPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSR 126 (351)
Q Consensus 47 ~~~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~ 126 (351)
.+..++|+||+.+++.|..+.+++++++...|+++|++|.||||.+||..+ +++||+.+..|+++|.||.+..++
T Consensus 19 ~~~~rkP~Wlr~k~p~~~~~~~~k~~~r~~~L~TVCEEA~CPNi~ECw~~~-----tATFmImG~~CTR~C~FC~V~~g~ 93 (306)
T COG0320 19 EELLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCRFCDVKTGR 93 (306)
T ss_pred chhccCcHhheecCCCCchHHHHHHHHHhcCCceecccCCCCChHHHhcCC-----ceEEeeccchhccCCCccccCCCC
Confidence 346789999999999999999999999999999999999999999999987 999999999999999999999987
Q ss_pred CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC
Q 018731 127 NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 127 ~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
+..++++|+.++++.+..+|.+++++|++++|||+|+|..+|.+++++|++..|++.|++++|||...++.++.+.++|
T Consensus 94 -P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~~ 172 (306)
T COG0320 94 -PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAG 172 (306)
T ss_pred -CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHhcC
Confidence 7779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 207 ~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
.|.++||+||+.+++..+| ++.+|++.++.++.+++..+.+.+++++|+|||||.+|+.++++.|++.|+|+++++|||
T Consensus 173 pdV~nHNvETVprL~~~VR-p~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYl 251 (306)
T COG0320 173 PDVFNHNVETVPRLYPRVR-PGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYL 251 (306)
T ss_pred cchhhcccccchhcccccC-CCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEEecccc
Confidence 9999999999999998898 899999999999999997777999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccchHHHHH
Q 018731 287 QPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKT 338 (351)
Q Consensus 287 ~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~~~~~~ 338 (351)
+||..+.++..+++|++|+.|++.++.+||.++.+||++||||||++.|.+.
T Consensus 252 qPS~~HlpV~ryv~PeeF~~~~~~a~~~GF~~v~sgPlvRSSYhA~~~~~~~ 303 (306)
T COG0320 252 QPSRKHLPVQRYVTPEEFDELEEVAEEMGFLHVASGPLVRSSYHADEQFAEA 303 (306)
T ss_pred CCccccCCceeccCHHHHHHHHHHHHHccchhhccCcccccccchHHHHHHh
Confidence 9999999999999999999999999999999999999999999999987654
No 3
>PLN02428 lipoic acid synthase
Probab=100.00 E-value=1e-59 Score=441.64 Aligned_cols=303 Identities=73% Similarity=1.253 Sum_probs=283.7
Q ss_pred CCCCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCC
Q 018731 47 DPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSR 126 (351)
Q Consensus 47 ~~~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~ 126 (351)
.+..++|+||+.+++.|+.+.++.++++...|+++|++|+|||+.+||.++.+...+.++|+++++|+++|.||+++..+
T Consensus 46 ~~~~~~p~wl~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~~~~~~taT~milg~gCtr~CrFCav~~~~ 125 (349)
T PLN02428 46 DKPLPKPKWLRQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIMILGDTCTRGCRFCAVKTSR 125 (349)
T ss_pred CCCCCCCcceeecCCCCchHHHHHHHHHHCCCceeecCCCCCChHHhhCCCCCCCceEEEEEecCCCCCCCCCCcCCCCC
Confidence 45568999999999999999999999999999999999999999999998755667999999999999999999999876
Q ss_pred CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC
Q 018731 127 NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 127 ~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
++.+.+++++.++++.+.++|+++++|+||+.++++|++.+++.++++.|++..|++.++++++++..+++.++.|+++|
T Consensus 126 ~p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG 205 (349)
T PLN02428 126 TPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSG 205 (349)
T ss_pred CCCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcC
Confidence 66667788999999999999999999999998888999999999999999998899999999999887999999999999
Q ss_pred CCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 207 ~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
++.+++|+|+.+++++.++++++++++++++++.+++.++|+.+++++|+|+|||+||+.+++++++++++|.+++++|+
T Consensus 206 ~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL 285 (349)
T PLN02428 206 LDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYL 285 (349)
T ss_pred CCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeecccc
Confidence 99999999998888887874578999999999999996669999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccchHHHHHHHhhhhhhhcC
Q 018731 287 QPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRERAKNTVA 349 (351)
Q Consensus 287 ~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~~~~~~~~~~~~~~~~~ 349 (351)
+||..+.++..+++|++|+.|++++.++||.++++||++||||||++.++++++.+++++.+|
T Consensus 286 ~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vrssy~a~~~~~~~~~~~~~~~~~~ 348 (349)
T PLN02428 286 RPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVRSSYKAGEFFIKSMIREDRAKAAA 348 (349)
T ss_pred CCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcccchhhhHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999977765
No 4
>PTZ00413 lipoate synthase; Provisional
Probab=100.00 E-value=3.8e-59 Score=434.72 Aligned_cols=314 Identities=53% Similarity=0.966 Sum_probs=284.0
Q ss_pred cCCCcceeccccCCCCCCCCCchhHhhhccCCc----chHHHHHHhcCCCHHHHHHHccCCCccccccCC-CCceeeEEE
Q 018731 32 MKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQ----RFQEVKESLSSLKLNTVCEEAQCPNIGECWNGG-GDGIATATI 106 (351)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~----~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~-~~~~~~~~~ 106 (351)
.+.+..+.++++.+. ..++|+||+.+++.|+ .+.++..+++...|+++|++|+|||+.+||.++ +.+..+++|
T Consensus 75 ~~~~~~~~~~~~~~~--~~~kP~Wlk~~~~~~~~~~~~~~~~~~~~~~~~L~TVCeea~CPNi~EC~~~~~~~~~~tATf 152 (398)
T PTZ00413 75 GLKPSAASIGPIKRG--EEPLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHTVCEEAKCPNIGECWGGGDEEGTATATI 152 (398)
T ss_pred ccccccccCCCccCC--CCCCCcceeecCCCCccccchHHHHHHHHHhCCCceeeCCCCCCChHHHhCCCCCCCCceeEe
Confidence 344445555555533 3589999999999998 789999999999999999999999999999875 223458999
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEE
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVE 186 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~ 186 (351)
|+.++.|+.+|.||++..+..+..++++|+.+.++.+.++|++++++|+|+.++++|++.++|.++++.|++..|++.|+
T Consensus 153 milG~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~Ie 232 (398)
T PTZ00413 153 MVMGDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLE 232 (398)
T ss_pred eecCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEE
Confidence 99999999999999998765445578999999999999999999999999988899999999999999999988899999
Q ss_pred EeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHh-CCCCeEEEeeeeeCCCCHHHH
Q 018731 187 CLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLS-KKGLITKSSIMLGLGESDDDL 265 (351)
Q Consensus 187 ~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~-~~Gi~v~~~~IvGlgEt~e~~ 265 (351)
++.+++..+++.++.|++||+++++||+||..+++..+|++.++|++.+++|+.+++. .+|+.+++++|+|+|||++|+
T Consensus 233 vligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEv 312 (398)
T PTZ00413 233 ALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEV 312 (398)
T ss_pred EcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHH
Confidence 9999988899999999999999999999999999988874468999999999999984 259999999999999999999
Q ss_pred HHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccchHHHHHHHhhhhh
Q 018731 266 KEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRERAK 345 (351)
Q Consensus 266 ~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~~~~~~~~~~~~~ 345 (351)
.++++.|+++|+|.++|+|||+||+.+.++..|++|++|+.|++++.++||.++++||++||||||++.++++.+.+|++
T Consensus 313 ie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVRSSY~A~e~~~~~~~~~r~~ 392 (398)
T PTZ00413 313 RQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVRSSYRAGEYYIKNLVKQRRK 392 (398)
T ss_pred HHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccccchhccHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888887775
Q ss_pred hh
Q 018731 346 NT 347 (351)
Q Consensus 346 ~~ 347 (351)
+.
T Consensus 393 ~~ 394 (398)
T PTZ00413 393 AK 394 (398)
T ss_pred hc
Confidence 54
No 5
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=100.00 E-value=1.8e-58 Score=428.92 Aligned_cols=295 Identities=47% Similarity=0.872 Sum_probs=275.1
Q ss_pred cCCCCCCCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCccc
Q 018731 43 HTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAV 122 (351)
Q Consensus 43 ~~~~~~~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~ 122 (351)
.....+..++|+||+.+++.|+.+.++..+++...|+++|++|+|||+.+||.++ +++|+.+++||+.+|+||++
T Consensus 8 ~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~-----tatfm~i~~gC~~~C~FC~v 82 (302)
T TIGR00510 8 IPNKEILLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG-----TATFMILGDICTRRCPFCDV 82 (302)
T ss_pred CcccCccCCCCcceEecCCCCchHHHHHHHHHHCCCceeecCCCCCCcccccCCC-----EEEEEecCcCcCCCCCcCCc
Confidence 3344556789999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CCCCCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHH
Q 018731 123 KTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETL 202 (351)
Q Consensus 123 ~~~~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L 202 (351)
+..+++...+++++.++++.+.+.|+++|+|||++.+++++.+.+++.++++.|++..|++.|+++++++..+.+.++.|
T Consensus 83 ~~~rg~~~~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l 162 (302)
T TIGR00510 83 AHGRNPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDIL 162 (302)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHH
Confidence 98776666788999999999999999999999999888887778899999999999889999999988876678999999
Q ss_pred HHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 203 VHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 203 ~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+++|++.+.+++||.+++++.++ ++++++++++.++.+++..+|+.+++++|+|||||+||+.+++++|+++|++.+++
T Consensus 163 ~~aG~dv~~hnlEt~~~l~~~vr-r~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~i 241 (302)
T TIGR00510 163 LDAPPDVYNHNLETVERLTPFVR-PGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTL 241 (302)
T ss_pred HHcCchhhcccccchHHHHHHhC-CCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 99999999999999988887777 68999999999999999777999999999999999999999999999999999999
Q ss_pred ecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccchHHHHHHHhhh
Q 018731 283 GQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRER 343 (351)
Q Consensus 283 ~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~~~~~~~~~~~ 343 (351)
++|++||+.+.++..+++|++|+.+++++.++||.++++||++||||||++.++++++.++
T Consensus 242 gqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p~vrssy~a~~~~~~~~~~~~ 302 (302)
T TIGR00510 242 GQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGPFVRSSYHADSLFAAGRLVKT 302 (302)
T ss_pred ecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChheEecccchhhhhHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999988753
No 6
>PRK12928 lipoyl synthase; Provisional
Probab=100.00 E-value=5.1e-54 Score=398.44 Aligned_cols=281 Identities=48% Similarity=0.847 Sum_probs=261.2
Q ss_pred CCCCCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCC
Q 018731 46 RDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTS 125 (351)
Q Consensus 46 ~~~~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~ 125 (351)
+.+..++|+||+.+++.|+.+.++.++++..+|++||+.|+||++.+||.++ +++|+.+|+||+++|+||+++.+
T Consensus 8 ~~~~~~~p~w~~~~~~~~~~~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~-----~~tfv~is~gC~~~C~FCa~~~g 82 (290)
T PRK12928 8 RIPVERLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG-----TATFLIMGSICTRRCAFCQVDKG 82 (290)
T ss_pred cCCCCCCCcceeecCCCChhHHHHHHHHHcCCHHHHHHHhCCCcccccCCCC-----EEEEEEecccccCcCCCCCccCC
Confidence 4466789999999999999999999999999999999999999999999887 99999999999999999999985
Q ss_pred CCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCC-CHHHHHHHHH
Q 018731 126 RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG-DLRAVETLVH 204 (351)
Q Consensus 126 ~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~-~~e~l~~L~~ 204 (351)
+ +..+++++++++++++.+.|+++|+|||++.+++++.+.+++.++++.|++..|+++|+++++++.. ..+.+..|++
T Consensus 83 ~-~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~ 161 (290)
T PRK12928 83 R-PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLA 161 (290)
T ss_pred C-CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHH
Confidence 5 4457889999999999999999999999988788877788999999999998889999998887654 6789999999
Q ss_pred cCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeec
Q 018731 205 SGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 205 aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
+|.+.+.+++||.+++++.++ ++++++++++.++.+++..+++.+++++|+|+|||+||+.+++++++++++|.+++++
T Consensus 162 Ag~~i~~hnlEt~~~vl~~m~-r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~ 240 (290)
T PRK12928 162 AKPDVFNHNLETVPRLQKAVR-RGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQ 240 (290)
T ss_pred cCchhhcccCcCcHHHHHHhC-CCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEc
Confidence 999999999999988887777 6899999999999999944459999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccch
Q 018731 285 YLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGE 333 (351)
Q Consensus 285 ~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~ 333 (351)
|++||+.+.++..+++|++|+.+++++.++||.++++||++||||||++
T Consensus 241 Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~~rssy~a~~ 289 (290)
T PRK12928 241 YLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPLVRSSYHAGE 289 (290)
T ss_pred CCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCcccccccCCC
Confidence 9999999999999999999999999999999999999999999999986
No 7
>PRK05481 lipoyl synthase; Provisional
Probab=100.00 E-value=3.1e-46 Score=347.32 Aligned_cols=280 Identities=56% Similarity=0.951 Sum_probs=252.0
Q ss_pred CCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCCC
Q 018731 49 DVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP 128 (351)
Q Consensus 49 ~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~~ 128 (351)
..++|+||+.+++.|+.+.+...+++..+|++||+.|+||+...+|.++ +++|+.+|+||+++|+||+++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~-----~~~fi~is~GC~~~C~FC~i~~~r~- 77 (289)
T PRK05481 4 VARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCPFCDVATGRP- 77 (289)
T ss_pred CCCCCcceeecCCCChhHHHHHHHHHhCChHHHHHhhCCCcchhccCCC-----eEEEEEecccccCCCCCceeCCCCC-
Confidence 4569999999999999999999999999999999999999988899876 8999999999999999999998763
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
..+++++++++++.+.+.|+++|+|+||+.+++++.+.+++.++++.|++..|++.|..+++......+.+..++++|.+
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~ 157 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPD 157 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcc
Confidence 34678999999999999999999999998655654456799999999999888889988887665556889999999999
Q ss_pred eeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
.+.++.|+.+++++.++ ++++++++++.++.+++..+|+.+++++|+|+|||+||+.+++++++++++|.+++++|+.|
T Consensus 158 i~~~~~ets~~vlk~m~-r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~p 236 (289)
T PRK05481 158 VFNHNLETVPRLYKRVR-PGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQP 236 (289)
T ss_pred eeeccccChHHHHHHhC-CCCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCCC
Confidence 99999999887877776 68999999999999999666999999999999999999999999999999999999999876
Q ss_pred CCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccchHH
Q 018731 289 TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELF 335 (351)
Q Consensus 289 Tp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~~~ 335 (351)
...++++...+.++++.++.++..++||.++.+||++||||+|++.+
T Consensus 237 a~k~~~v~~~~k~~r~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 283 (289)
T PRK05481 237 SRKHLPVERYVTPEEFDEYKEIALELGFLHVASGPLVRSSYHADEQA 283 (289)
T ss_pred ccccCCCCCcCCHHHHHHHHHHHHHcCchheEecCccccchhhHHHH
Confidence 55234678899999999999999999999999999999999999854
No 8
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.97 E-value=5.7e-30 Score=245.18 Aligned_cols=248 Identities=19% Similarity=0.208 Sum_probs=197.1
Q ss_pred hhccCCcch--HHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeE--EEEeeccCCCCCCcCcccCCCCC---CCC
Q 018731 58 QKAPQGQRF--QEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATA--TIMLLGDTCTRGCRFCAVKTSRN---PAP 130 (351)
Q Consensus 58 ~~~~~g~~~--~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~--~~i~~s~gC~~~C~FC~~~~~~~---~~~ 130 (351)
+++.+|+++ .++..+++..++..|+..|+ .+++.++|+ .+.+. .+++.|++|+.+|.||+++...+ ...
T Consensus 3 ~~~~~~~~ls~~e~~~L~~~~~~~~L~~~A~--~vr~~~~g~--~v~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~ 78 (351)
T TIGR03700 3 EKVEAGQRLSFEDGLFLYASDDLLTLGELAA--LVRERKHGD--KVYFNVNRHLNYTNICVNGCAFCAFQRERGEPGAYA 78 (351)
T ss_pred hHHhCCCCCCHHHHHHHcCCCcHHHHHHHHH--HHHHHhcCC--eEEEeccCCcccccccccCCccCceeCCCCCcccCC
Confidence 455666555 56888888788999999999 999988874 55444 66788999999999999987543 223
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec---------CCCCCHHHHHH
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDLRAVET 201 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~---------~~~~~~e~l~~ 201 (351)
++++++.+.++.+.+.|+++++++||+.++++ .+++.++++.|++.+|++.+.++++ .+..+++.++.
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~---~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~ 155 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHIVGGLHPNLP---FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDE 155 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 67899999999999999999999999875543 6899999999999999998887553 24457889999
Q ss_pred HHHcCCCeeec-chhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCE
Q 018731 202 LVHSGLDVFAH-NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDI 279 (351)
Q Consensus 202 L~~aG~~~i~~-~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~ 279 (351)
|+++|++++.+ ++|++++ +++.+++.+.+.++++++++.+++ .|+.+++++|+|+|||.+|+.+++..+++++++.
T Consensus 156 LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~--~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~ 233 (351)
T TIGR03700 156 LKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHE--LGLKTNATMLYGHIETPAHRVDHMLRLRELQDET 233 (351)
T ss_pred HHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHH--cCCCcceEEEeeCCCCHHHHHHHHHHHHHhhHhh
Confidence 99999999985 8999754 666665223578899999999999 9999999999999999999999999999999876
Q ss_pred Eeee-----cccCC-CCCcccccCCCCHHHHHHHHHHHHhc
Q 018731 280 LTLG-----QYLQP-TPLHLTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 280 i~i~-----~~l~P-Tp~~~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
.++. +|+.+ ||+........++.+..+..++++.+
T Consensus 234 ~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~ 274 (351)
T TIGR03700 234 GGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLY 274 (351)
T ss_pred CCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHh
Confidence 3332 34423 78752112457888888877777653
No 9
>PRK06256 biotin synthase; Validated
Probab=99.97 E-value=1.3e-29 Score=241.89 Aligned_cols=274 Identities=23% Similarity=0.268 Sum_probs=208.4
Q ss_pred HhhhccCCcch--HHHHHHhc--CCCHHHHHHHccCCCccccccCCCCceeeEEEEee-ccCCCCCCcCcccCCCCCC--
Q 018731 56 LRQKAPQGQRF--QEVKESLS--SLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSRNP-- 128 (351)
Q Consensus 56 i~~~~~~g~~~--~~~~~ll~--~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~-s~gC~~~C~FC~~~~~~~~-- 128 (351)
+.+++.+|+.+ +++..+++ ..+++.|+..|+ .+++.++| +.+...+++++ |++|+++|.||+++...+.
T Consensus 10 ~~~~~~~g~~~~~~e~~~ll~~~~~~~~~L~~~A~--~~r~~~~g--~~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~~ 85 (336)
T PRK06256 10 LARKLLEGEGLTKEEALALLEIPDDDLLELLAAAY--EVRKHFCG--KKVKLNTIINAKSGLCPEDCGYCSQSAGSSAPV 85 (336)
T ss_pred HHHHHHcCCCCCHHHHHHHHcCChHHHHHHHHHHH--HHHHHhCC--CeEEEEEeeeccCCCCCCCCccCCCcCCCCCCC
Confidence 34566777666 56888887 346899999999 99999887 45666677765 9999999999999864321
Q ss_pred ---CCCCchhHHHHHHHHHhCCCcEEEE-eccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHH
Q 018731 129 ---APPDPMEPENTAKAIASWGVDYIVL-TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (351)
Q Consensus 129 ---~~~~~eei~~~~~~~~~~G~~~I~l-tgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~ 204 (351)
..++++++.+.++.+.+.|+.++.+ +||..+ .....+++.++++.|++. +++.+.+ +.+.++++.++.|++
T Consensus 86 ~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p--~~~~~~~~~e~i~~i~~~-~~i~~~~--~~g~l~~e~l~~Lke 160 (336)
T PRK06256 86 YRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGP--SGKEVDQVVEAVKAIKEE-TDLEICA--CLGLLTEEQAERLKE 160 (336)
T ss_pred ceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCC--CchHHHHHHHHHHHHHhc-CCCcEEe--cCCcCCHHHHHHHHH
Confidence 2357799999999999999987766 445432 222356899999999986 5666544 334469999999999
Q ss_pred cCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeec
Q 018731 205 SGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 205 aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
+|++++.+++||.++.++.++ +.+++++++++++.+++ .|+.+++++|+|+|||.+|+.+++.++++++++.++++
T Consensus 161 aG~~~v~~~lEts~~~~~~i~-~~~t~~~~i~~i~~a~~--~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~- 236 (336)
T PRK06256 161 AGVDRYNHNLETSRSYFPNVV-TTHTYEDRIDTCEMVKA--AGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPIN- 236 (336)
T ss_pred hCCCEEecCCccCHHHHhhcC-CCCCHHHHHHHHHHHHH--cCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeec-
Confidence 999999999999444677776 67899999999999999 99999999999999999999999999999999999995
Q ss_pred ccCC---CCCcccccCCCCHHHHHHHHHHHHhc---------CcceeccCccccccc-ccchHHHHHHHhhhh
Q 018731 285 YLQP---TPLHLTVKEYVTPEKFDFWKAYGESI---------GFRYVASGPLVRSSY-RAGELFVKTMVRERA 344 (351)
Q Consensus 285 ~l~P---Tp~~~~~~~~v~~~e~~~~~~~~~~~---------G~~~~~~~~~~r~~~-~a~~~~~~~~~~~~~ 344 (351)
++.| ||++ ....+++.++.++.+.++.+ |.+....+..+...+ .|+..++|+||+..-
T Consensus 237 ~l~P~pGT~l~--~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~~g~~~~~~g~~lt~~g 307 (336)
T PRK06256 237 FLNPIPGTPLE--NHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGLGGANSVIVGNYLTTVG 307 (336)
T ss_pred ccccCCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHhccCceeeECCcccCCC
Confidence 5656 7775 24567888888877666643 223222333333333 233388899996544
No 10
>PRK08444 hypothetical protein; Provisional
Probab=99.97 E-value=1.6e-29 Score=240.57 Aligned_cols=245 Identities=17% Similarity=0.250 Sum_probs=198.6
Q ss_pred hhhccCCcch--HHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeE--EEEeeccCCCCCCcCcccCCCCCC---C
Q 018731 57 RQKAPQGQRF--QEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATA--TIMLLGDTCTRGCRFCAVKTSRNP---A 129 (351)
Q Consensus 57 ~~~~~~g~~~--~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~--~~i~~s~gC~~~C~FC~~~~~~~~---~ 129 (351)
.+++.+|+++ .|+..|++. ++..|+..|+ .+++.++|+ .+... .++++|+.|..+|.||+|...++. .
T Consensus 4 ~~kv~~g~~ls~eeal~Ll~~-dl~~L~~~A~--~vR~~~~G~--~Vt~~~n~~In~TN~C~~~C~FCaf~~~~~~~~~y 78 (353)
T PRK08444 4 IEKLENNERLNQEEAVKLYDL-DLFTLGKYAD--KKRTKLHGK--KVYFNVNRHINPTNICADVCKFCAFSAHRKNPNPY 78 (353)
T ss_pred HHHHhcCCCCCHHHHHHHhhc-CHHHHHHHHH--HHHHHhcCC--EEEEEecCCcccccccccCCccCCCccCCCCCccc
Confidence 3566777665 568888854 8999999999 999999874 44333 567889999999999999874422 3
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecC---------CCCCHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD---------FRGDLRAVE 200 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~---------~~~~~e~l~ 200 (351)
.++++|+.+.++++.+.|++++.|+||..+++ +.+++.++++.||+.+|++++.++++. +...+|.+.
T Consensus 79 ~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~---~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~ 155 (353)
T PRK08444 79 TMSHEEILEIVKNSVKRGIKEVHIVSAHNPNY---GYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLE 155 (353)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeccCCCCC---CHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHH
Confidence 46779999999999999999999998876554 378999999999999999999876543 344679999
Q ss_pred HHHHcCCCeeec-chhchHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCC
Q 018731 201 TLVHSGLDVFAH-NIETVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDV 277 (351)
Q Consensus 201 ~L~~aG~~~i~~-~ies~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~ 277 (351)
.|++||++++.+ +.|.+++ +++.+. |. .+.++|++.++.+++ .|+.+++++|+|+|||.+|+.+++..|++++.
T Consensus 156 ~LkeAGl~~~~g~~aEi~~~~vr~~I~-p~k~~~~~~~~i~~~a~~--~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~ 232 (353)
T PRK08444 156 DMLEYGVDSMPGGGAEIFDEEVRKKIC-KGKVSSERWLEIHKYWHK--KGKMSNATMLFGHIENREHRIDHMLRLRDLQD 232 (353)
T ss_pred HHHHhCcccCCCCCchhcCHHHHhhhC-CCCCCHHHHHHHHHHHHH--cCCCccceeEEecCCCHHHHHHHHHHHHHhcc
Confidence 999999999998 6899765 677776 54 466899999999999 99999999999999999999999999999999
Q ss_pred CEEeeeccc----CC--CCCcccccCCCCHHHHHHHHHHHHhc
Q 018731 278 DILTLGQYL----QP--TPLHLTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 278 d~i~i~~~l----~P--Tp~~~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
+.++|..|+ +| ||+. .....++.++.+..++++.+
T Consensus 233 ~t~gf~~fIp~~f~~~~t~l~--~~~~~~~~e~Lr~iAi~Rl~ 273 (353)
T PRK08444 233 KTGGFNAFIPLVYQRENNYLK--VEKFPSSQEILKTIAISRIL 273 (353)
T ss_pred ccCCceEEEecccCCCCCcCC--CCCCCCHHHHHHHHHHHHHh
Confidence 988875343 22 6664 24568888888877777653
No 11
>PRK07094 biotin synthase; Provisional
Probab=99.97 E-value=1.3e-28 Score=233.90 Aligned_cols=232 Identities=23% Similarity=0.339 Sum_probs=188.8
Q ss_pred HHHHHHhcCCC---HHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHH
Q 018731 67 QEVKESLSSLK---LNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTA 140 (351)
Q Consensus 67 ~~~~~ll~~~~---l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~ 140 (351)
.|++.||+..+ ++.|++.|+ .+++.+.| +.+...+++.+|++|+++|.||+++...+. ..++++++.+++
T Consensus 4 ~e~~~ll~~~~~~~~~~L~~~A~--~~r~~~~g--~~v~~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~ 79 (323)
T PRK07094 4 DEILELLSNDDEEELKYLFKAAD--EVRKKYVG--DEVHLRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECA 79 (323)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH--HHHHHhCC--CEEEEEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHH
Confidence 46777877644 345899999 99999887 467778888999999999999999875432 235788999999
Q ss_pred HHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-
Q 018731 141 KAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR- 219 (351)
Q Consensus 141 ~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~- 219 (351)
+.+.+.|++.|+|+||+++.+. .+++.++++.|++. +++.+.+ +. +..+++.++.|+++|++++.+++||.++
T Consensus 80 ~~~~~~g~~~i~l~gG~~~~~~---~~~l~~l~~~i~~~-~~l~i~~-~~-g~~~~e~l~~Lk~aG~~~v~~glEs~~~~ 153 (323)
T PRK07094 80 KKAYELGYRTIVLQSGEDPYYT---DEKIADIIKEIKKE-LDVAITL-SL-GERSYEEYKAWKEAGADRYLLRHETADKE 153 (323)
T ss_pred HHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHcc-CCceEEE-ec-CCCCHHHHHHHHHcCCCEEEeccccCCHH
Confidence 9988899999999999754343 58999999999986 5666654 23 3358999999999999999999999865
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc
Q 018731 220 LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK 296 (351)
Q Consensus 220 ~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~ 296 (351)
.++.++ +++++++++++++.+++ .|+.+++++|+|+ |||.+++.++++++++++++.+.++.|. .| ||++. .
T Consensus 154 ~~~~i~-~~~s~~~~~~~i~~l~~--~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~--~ 228 (323)
T PRK07094 154 LYAKLH-PGMSFENRIACLKDLKE--LGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKD--E 228 (323)
T ss_pred HHHHhC-CCCCHHHHHHHHHHHHH--cCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCccc--C
Confidence 677776 57899999999999999 9999999999999 9999999999999999999999996554 33 88863 3
Q ss_pred CCCCHHHHHHHHHHHHh
Q 018731 297 EYVTPEKFDFWKAYGES 313 (351)
Q Consensus 297 ~~v~~~e~~~~~~~~~~ 313 (351)
...+.++..++.+.++.
T Consensus 229 ~~~~~~~~~~~~a~~R~ 245 (323)
T PRK07094 229 KGGSLELTLKVLALLRL 245 (323)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 34667777776666654
No 12
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.97 E-value=1.3e-29 Score=235.21 Aligned_cols=231 Identities=22% Similarity=0.306 Sum_probs=190.0
Q ss_pred HHHHHHhcCCCHH-HHHHHccCCCccccccCCCCceeeEEEEee-ccCCCCCCcCcccCCCCC-----CCCCCchhHHHH
Q 018731 67 QEVKESLSSLKLN-TVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSRN-----PAPPDPMEPENT 139 (351)
Q Consensus 67 ~~~~~ll~~~~l~-~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~-s~gC~~~C~FC~~~~~~~-----~~~~~~eei~~~ 139 (351)
.++..+++....+ .|+++|. .+|++|.| +.|...+++++ |.+|+.+|.||+++...+ ...++.++|++.
T Consensus 17 ~e~~~l~~~~~~~~~L~~aA~--~~R~~~~g--~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~ 92 (335)
T COG0502 17 DEALALLDLPDEDELLFEAAQ--KHRLHFDG--NEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEA 92 (335)
T ss_pred HHHHHHHcCCcchHHHHHHHH--HHHHhcCC--CeEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHH
Confidence 4577777766555 7899999 99999998 57889999988 445599999999987431 123567889999
Q ss_pred HHHHHhCC-CcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchH
Q 018731 140 AKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK 218 (351)
Q Consensus 140 ~~~~~~~G-~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~ 218 (351)
++.+.+.| .+.+.+++|.. .+...+++.++++.+++.. ++.+.+ +.+.++++.++.|+++|+++++||+||..
T Consensus 93 Ak~ak~~Ga~r~c~~aagr~---~~~~~~~i~~~v~~Vk~~~-~le~c~--slG~l~~eq~~~L~~aGvd~ynhNLeTs~ 166 (335)
T COG0502 93 AKKAKAAGATRFCMGAAGRG---PGRDMEEVVEAIKAVKEEL-GLEVCA--SLGMLTEEQAEKLADAGVDRYNHNLETSP 166 (335)
T ss_pred HHHHHHcCCceEEEEEeccC---CCccHHHHHHHHHHHHHhc-CcHHhh--ccCCCCHHHHHHHHHcChhheecccccCH
Confidence 99999999 55566677763 2234789999999999653 444433 33467999999999999999999999977
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC-CCEEeeecccCC---CCCccc
Q 018731 219 RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID-VDILTLGQYLQP---TPLHLT 294 (351)
Q Consensus 219 ~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg-~d~i~i~~~l~P---Tp~~~~ 294 (351)
++|+.+. ++++|++++++++.+++ +|+.++++.|+|+|||.+|..+++..++++. +|.|+++ +|.| ||++
T Consensus 167 ~~y~~I~-tt~t~edR~~tl~~vk~--~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn-~l~P~~GTPle-- 240 (335)
T COG0502 167 EFYENII-TTRTYEDRLNTLENVRE--AGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPIN-FLNPIPGTPLE-- 240 (335)
T ss_pred HHHcccC-CCCCHHHHHHHHHHHHH--cCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeee-eecCCCCCccc--
Confidence 7887776 78999999999999999 9999999999999999999999999999999 9999995 7656 9987
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 018731 295 VKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 295 ~~~~v~~~e~~~~~~~~~~ 313 (351)
..+.+++.++.++.+.++.
T Consensus 241 ~~~~~~~~e~lk~IA~~Ri 259 (335)
T COG0502 241 NAKPLDPFEFLKTIAVARI 259 (335)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 3677899888888777664
No 13
>PRK08508 biotin synthase; Provisional
Probab=99.97 E-value=6.7e-29 Score=230.49 Aligned_cols=235 Identities=20% Similarity=0.273 Sum_probs=185.7
Q ss_pred CceeeEEEEee-ccCCCCCCcCcccCCCC-C---CCC-CCchhHHHHHHHHHhCCCcEEEEe-ccCCCCCCCCcHHHHHH
Q 018731 99 DGIATATIMLL-GDTCTRGCRFCAVKTSR-N---PAP-PDPMEPENTAKAIASWGVDYIVLT-SVDRDDIPDGGSGHFAR 171 (351)
Q Consensus 99 ~~~~~~~~i~~-s~gC~~~C~FC~~~~~~-~---~~~-~~~eei~~~~~~~~~~G~~~I~lt-gg~~~~l~~~~~~~~~~ 171 (351)
|.+...+++++ |.+|+.+|.||+++... . ... ++++++.+.++++.+.|+.++.++ +|.. +++...+++.+
T Consensus 2 ~~~~~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~--~~~~~~e~~~e 79 (279)
T PRK08508 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRG--LDDKKLEYVAE 79 (279)
T ss_pred CeEEEEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCC--CCcccHHHHHH
Confidence 45668888886 99999999999998632 1 122 577999999999888999999874 5553 33445789999
Q ss_pred HHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 018731 172 TVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 172 li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (351)
+++.|++..|++.+.+ ..+..+++.++.|+++|++++++++||.+++++.++ ++++|++++++++.+++ .|+.++
T Consensus 80 i~~~ik~~~p~l~i~~--s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~-~~~~~~~~l~~i~~a~~--~Gi~v~ 154 (279)
T PRK08508 80 AAKAVKKEVPGLHLIA--CNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKIC-TTHTWEERFQTCENAKE--AGLGLC 154 (279)
T ss_pred HHHHHHhhCCCcEEEe--cCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCC-CCCCHHHHHHHHHHHHH--cCCeec
Confidence 9999999888877654 335569999999999999999999999877776555 57899999999999999 999999
Q ss_pred EeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCcccccCCCCHHHHHHHHHHHHhc---------Cccee
Q 018731 252 SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWKAYGESI---------GFRYV 319 (351)
Q Consensus 252 ~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~~~~~~~~~~---------G~~~~ 319 (351)
+++|+|+|||.||+.+++.++++++++.+++ +|+.| ||+. ....++++..++.++++.+ |.+..
T Consensus 155 sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl-~~~~p~~~t~~~---~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~ 230 (279)
T PRK08508 155 SGGIFGLGESWEDRISFLKSLASLSPHSTPI-NFFIPNPALPLK---APTLSADEALEIVRLAKEALPNARLMVAGGREV 230 (279)
T ss_pred ceeEEecCCCHHHHHHHHHHHHcCCCCEEee-CCcCCCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCceeeecCChhh
Confidence 9999999999999999999999999999999 57766 7764 2457888888887777653 22222
Q ss_pred ccCcccccccccc--hHHHHHHHhhhh
Q 018731 320 ASGPLVRSSYRAG--ELFVKTMVRERA 344 (351)
Q Consensus 320 ~~~~~~r~~~~a~--~~~~~~~~~~~~ 344 (351)
..+......+.|| ..++++||+..-
T Consensus 231 ~~~~~~~~~~~~g~n~~~~g~~lt~~g 257 (279)
T PRK08508 231 VFGERQYEIFEAGANAIVIGDYLTTKG 257 (279)
T ss_pred hchhhHHHHHhcCCcceeecCcccCCC
Confidence 2233444455664 389999997654
No 14
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.97 E-value=3.6e-29 Score=241.02 Aligned_cols=272 Identities=19% Similarity=0.218 Sum_probs=209.2
Q ss_pred hhccCCcch--HHHHHHhcC---CCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCC--CCC
Q 018731 58 QKAPQGQRF--QEVKESLSS---LKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRN--PAP 130 (351)
Q Consensus 58 ~~~~~g~~~--~~~~~ll~~---~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~--~~~ 130 (351)
+++.+|+.+ .|+..|++. .+++.|+..|+ .+++.++| +.+.....+++|++|+.+|.||+++...+ ...
T Consensus 28 ~~il~g~~ls~ee~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G--~~v~l~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ 103 (371)
T PRK09240 28 ERALNKDRLSLEDLMALLSPAAEPYLEEMAQKAQ--RLTRQRFG--NTISLYTPLYLSNYCANDCTYCGFSMSNKIKRKT 103 (371)
T ss_pred HHHHhcCCCCHHHHHHHhCCCChhHHHHHHHHHH--HHHHHHcC--CEEEEEeceEEcccccCcCCcCCCCCCCCCcccc
Confidence 345566555 468888874 35888999999 99999888 46766778888999999999999976432 234
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
++++|+.+.++.+.+.|+++|.|+||+++. ..+.+++.++++.|++.+|++++++ +.++.+.++.|+++|++++
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~--~~~~e~l~~~i~~Ik~~~p~i~i~~----g~lt~e~l~~Lk~aGv~r~ 177 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEA--KVGVDYIRRALPIAREYFSSVSIEV----QPLSEEEYAELVELGLDGV 177 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCC--CCCHHHHHHHHHHHHHhCCCceecc----CCCCHHHHHHHHHcCCCEE
Confidence 678999999999999999999999888643 2347999999999999888877754 2258899999999999999
Q ss_pred ecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeCCCCHHHHHHHHHHHHhCCCC------EE
Q 018731 211 AHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLGESDDDLKEAMADLRSIDVD------IL 280 (351)
Q Consensus 211 ~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGlgEt~e~~~~~l~~l~~lg~d------~i 280 (351)
++++||.++ .++.++ ++++++++++++++.+++ +|+. +++++|+|+||+.+|+.+++..+++++++ .|
T Consensus 178 ~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~--aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv 255 (371)
T PRK09240 178 TVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGR--AGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSI 255 (371)
T ss_pred EEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHH--cCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceee
Confidence 999999855 666654 347899999999999999 9996 99999999999999999999999998864 67
Q ss_pred eeecccCCCCCcccccCCCCHHHHHHHHHHHHhc----Cc-----ceeccCc----ccccccccch-HHHHHHHhh
Q 018731 281 TLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESI----GF-----RYVASGP----LVRSSYRAGE-LFVKTMVRE 342 (351)
Q Consensus 281 ~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~----G~-----~~~~~~~----~~r~~~~a~~-~~~~~~~~~ 342 (351)
++ ++++|.+..+.....+++.++.++....+.+ +. +....+. +....+.||+ .++|+|++.
T Consensus 256 ~~-~~l~P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lrd~~~~~~~~~~~ag~~~~~G~y~~~ 330 (371)
T PRK09240 256 SF-PRLRPCTGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRESPEFRDNLIPLGITKMSAGSSTQPGGYADD 330 (371)
T ss_pred ec-CccccCCCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCCHHHHHHHHhhcceeeccCccCCCCCcCCC
Confidence 77 6778854333345678998988876655432 22 1111111 2223445555 778899876
No 15
>PRK05926 hypothetical protein; Provisional
Probab=99.97 E-value=1.2e-28 Score=235.94 Aligned_cols=248 Identities=15% Similarity=0.152 Sum_probs=196.8
Q ss_pred HhhhccCCcch--HHHHHHhc---CCCHHHHHHHccCCCccccccCCCCceeeEEEEe--eccCCCCCCcCcccCCCCCC
Q 018731 56 LRQKAPQGQRF--QEVKESLS---SLKLNTVCEEAQCPNIGECWNGGGDGIATATIML--LGDTCTRGCRFCAVKTSRNP 128 (351)
Q Consensus 56 i~~~~~~g~~~--~~~~~ll~---~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~--~s~gC~~~C~FC~~~~~~~~ 128 (351)
+.+++.+|+++ .|...+++ ..++..|+..|+ .+++.++| |.+.....++ .|+.|+.+|.||++....+.
T Consensus 18 ~~~kv~~g~~ls~eeal~Ll~~~~~~~l~~L~~~A~--~iR~~~~G--~~V~~~~~~nin~Tn~C~~dC~FCaf~~~~~~ 93 (370)
T PRK05926 18 LFDDYLSGARLSEEDALQLLLLTDAEDQRALWSFAD--LIRANRVG--DTVYYSSTLYLYPTNFCQFNCTFCSFYAKPGD 93 (370)
T ss_pred HHHHHHcCCCCCHHHHHHHHhCCCchHHHHHHHHHH--HHHHHhcC--CeEEEEEeeeeecCCCCCCCCCccccccCCCC
Confidence 44677788776 46888883 357899999999 99999987 4666666654 59999999999998764432
Q ss_pred ---CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecC---------CCCCH
Q 018731 129 ---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD---------FRGDL 196 (351)
Q Consensus 129 ---~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~---------~~~~~ 196 (351)
..++++|+.+.+++. ..|+++|.|+||..+.+ +.+++.++++.|++.+|++.+.++++. ...++
T Consensus 94 ~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~---~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~ 169 (370)
T PRK05926 94 PKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSC---NLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVK 169 (370)
T ss_pred cccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCC---CHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHH
Confidence 235678999999887 68999999999887554 378999999999999999988876532 23468
Q ss_pred HHHHHHHHcCCCeeecc-hhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 197 RAVETLVHSGLDVFAHN-IETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~-ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
+.++.|++||++++.++ .|++++ .++.+...+.+.++|+++++.+++ .|+.+++++|+|+|||.+|+.+++..|++
T Consensus 170 e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~--~Gi~~~sgmi~G~gEt~edrv~~l~~Lr~ 247 (370)
T PRK05926 170 EVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHS--LGIPSNATMLCYHRETPEDIVTHMSKLRA 247 (370)
T ss_pred HHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCcccCceEEeCCCCHHHHHHHHHHHHh
Confidence 89999999999999984 999766 565565235688999999999999 99999999999999999999999999999
Q ss_pred CCCCEEeeeccc----CC--CCCccc--ccCCCCHHHHHHHHHHHHh
Q 018731 275 IDVDILTLGQYL----QP--TPLHLT--VKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 275 lg~d~i~i~~~l----~P--Tp~~~~--~~~~v~~~e~~~~~~~~~~ 313 (351)
++++.++|..|+ +| ||+... .....+..+..++.++++.
T Consensus 248 Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl 294 (370)
T PRK05926 248 LQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARL 294 (370)
T ss_pred cCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHH
Confidence 999998887665 24 665421 1224566677777667665
No 16
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3e-29 Score=241.76 Aligned_cols=264 Identities=18% Similarity=0.293 Sum_probs=196.0
Q ss_pred ccCCCcceeccccCCCCCCCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeec
Q 018731 31 KMKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLG 110 (351)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s 110 (351)
+....+.+.|+.++|+++.+++|+.|.+.....+....+.+....... . .+...+.++ ..+++.++
T Consensus 86 ~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~-----~~A~v~I~ 151 (437)
T COG0621 86 EEILERAPEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKF------D---KLPPRREGG-----VRAFVKIQ 151 (437)
T ss_pred HHHHhhCCCceEEECCccHHHHHHHHHHHhhccccccccccccccccc------c---cCCCCcCCC-----eEEEEEhh
Confidence 444557899999999999999999997654433332111111111111 1 222224454 89999999
Q ss_pred cCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC-Cc--HHHHHHHHHHHHHhCCC---c
Q 018731 111 DTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD-GG--SGHFARTVKAMKKQKPD---I 183 (351)
Q Consensus 111 ~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~-~~--~~~~~~li~~ik~~~p~---i 183 (351)
.||+++|+||.+|+.||... +.+++|+++++.+++.|+++|+|+|++...+.. .+ ...|.+|++.|.+ .+| +
T Consensus 152 eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~-I~G~~ri 230 (437)
T COG0621 152 EGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK-IPGIERI 230 (437)
T ss_pred cCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc-CCCceEE
Confidence 99999999999999987655 456899999999999999999999988654421 11 3569999999988 455 3
Q ss_pred EEEEeecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-C
Q 018731 184 MVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G 259 (351)
Q Consensus 184 ~i~~~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-g 259 (351)
++....|.- .+++.++.+++.. +..+.+-+||.++ +.+.++ ++++.++.++.++++++.+|++.++++||||| |
T Consensus 231 R~~~~~P~~-~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~-R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPg 308 (437)
T COG0621 231 RFGSSHPLE-FTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMK-RGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPG 308 (437)
T ss_pred EEecCCchh-cCHHHHHHHhcCCcccccccCccccCCHHHHHHhC-CCcCHHHHHHHHHHHHHhCCCceEeccEEEECCC
Confidence 444444533 4889999998852 4455678899765 566665 68999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcc---cccCCCCHHHHHHHHHHH
Q 018731 260 ESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHL---TVKEYVTPEKFDFWKAYG 311 (351)
Q Consensus 260 Et~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~---~~~~~v~~~e~~~~~~~~ 311 (351)
||+|||++|++++++.+++.++++.|+ +| ||.+. ++...+..+.+.++.++.
T Consensus 309 ETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~ 365 (437)
T COG0621 309 ETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQ 365 (437)
T ss_pred CCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887 66 88872 122334445555555443
No 17
>PLN02389 biotin synthase
Probab=99.96 E-value=1.8e-28 Score=235.30 Aligned_cols=265 Identities=17% Similarity=0.239 Sum_probs=200.7
Q ss_pred hHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEee-ccCCCCCCcCcccCCCC--CC---CCCCchhHHHH
Q 018731 66 FQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSR--NP---APPDPMEPENT 139 (351)
Q Consensus 66 ~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~-s~gC~~~C~FC~~~~~~--~~---~~~~~eei~~~ 139 (351)
..|++.++.. ++..|+..|+ .+++.++++ +.+...+++++ |++|+.+|.||++.... +. ..++++++.+.
T Consensus 49 ~~e~l~L~~~-~l~~l~~~A~--~vr~~~~~~-~~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~ 124 (379)
T PLN02389 49 RDEIKEVYDS-PLLDLLFHGA--QVHRHAHDP-REVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEA 124 (379)
T ss_pred HHHHHHHHcC-cHHHHHHHHH--HHHHHhcCC-CEEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHH
Confidence 4677888854 8889999999 898877764 67888899988 99999999999997632 11 23678999999
Q ss_pred HHHHHhCCCcEEEEeccCCCCC-CCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchH
Q 018731 140 AKAIASWGVDYIVLTSVDRDDI-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK 218 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltgg~~~~l-~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~ 218 (351)
++.+.+.|++++.++....... .+..++++.++++.+++. ++.+.+ +.+.++++.++.|++||++++++++||.+
T Consensus 125 a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~--~l~i~~--s~G~l~~E~l~~LkeAGld~~~~~LeTs~ 200 (379)
T PLN02389 125 AKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGM--GMEVCC--TLGMLEKEQAAQLKEAGLTAYNHNLDTSR 200 (379)
T ss_pred HHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcC--CcEEEE--CCCCCCHHHHHHHHHcCCCEEEeeecCCh
Confidence 9999999999998742111001 111267899999999864 445432 34457999999999999999999999976
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhC--CCCEEeeecccCC---CCCcc
Q 018731 219 RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI--DVDILTLGQYLQP---TPLHL 293 (351)
Q Consensus 219 ~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~l--g~d~i~i~~~l~P---Tp~~~ 293 (351)
+.++.++ +++++++++++++.+++ .|+.+++++|+|+|||.+|+.+++.+++++ +++.+.++ ++.| ||++
T Consensus 201 ~~y~~i~-~~~s~e~rl~ti~~a~~--~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~-~l~P~~GTpL~- 275 (379)
T PLN02389 201 EYYPNVI-TTRSYDDRLETLEAVRE--AGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPIN-ALVAVKGTPLE- 275 (379)
T ss_pred HHhCCcC-CCCCHHHHHHHHHHHHH--cCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecc-cceecCCCcCC-
Confidence 6776665 46899999999999999 999999999999999999999999999999 58899994 6667 7775
Q ss_pred cccCCCCHHHHHHHHHHHHhcC---cceecc-----Ccc-cccccccc--hHHHHHH-Hhhhh
Q 018731 294 TVKEYVTPEKFDFWKAYGESIG---FRYVAS-----GPL-VRSSYRAG--ELFVKTM-VRERA 344 (351)
Q Consensus 294 ~~~~~v~~~e~~~~~~~~~~~G---~~~~~~-----~~~-~r~~~~a~--~~~~~~~-~~~~~ 344 (351)
....+++.++.+..++++.+- +..... ++. ....+.+| ..|+|+| |+.+-
T Consensus 276 -~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g 337 (379)
T PLN02389 276 -DQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPN 337 (379)
T ss_pred -CCCCCCHHHHHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCCEEEECCcccCCCC
Confidence 235688888888777766531 222211 221 23344554 4999998 86654
No 18
>PRK08445 hypothetical protein; Provisional
Probab=99.96 E-value=3.1e-28 Score=232.13 Aligned_cols=240 Identities=17% Similarity=0.227 Sum_probs=192.6
Q ss_pred hHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeE---EEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHH
Q 018731 66 FQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATA---TIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENT 139 (351)
Q Consensus 66 ~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~---~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~ 139 (351)
..|++.|++..++..|+..|+ .+++.+.|+ .+.++ .++++|++|+.+|.||+++...+. ..++++++.+.
T Consensus 6 ~~e~l~Ll~~~~l~~L~~~A~--~vr~~~~g~--~v~~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~ 81 (348)
T PRK08445 6 KEEALDLIKNAPLKELGEMAL--ERKQELHPE--KITTFIVDRNINYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKK 81 (348)
T ss_pred HHHHHHHhcCCCHHHHHHHHH--HHHHHHcCC--cEEEEecccccccccccccCCccCCCccCCCCCCCeeCCHHHHHHH
Confidence 456788888789999999999 999998874 34443 347789999999999999874322 23577999999
Q ss_pred HHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecC---------CCCCHHHHHHHHHcCCCee
Q 018731 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD---------FRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~---------~~~~~e~l~~L~~aG~~~i 210 (351)
++++.+.|.++|+++||+++.++ .+++.++++.|++.+|++.+.++++. +...+|.++.|+++|++++
T Consensus 82 ~~~a~~~g~~~i~~~gg~~~~~~---~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~ 158 (348)
T PRK08445 82 IEELLAIGGTQILFQGGVHPKLK---IEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSI 158 (348)
T ss_pred HHHHHHcCCCEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCC
Confidence 99999999999999998876554 68999999999999999988765432 2223899999999999999
Q ss_pred e-cchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeec----
Q 018731 211 A-HNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ---- 284 (351)
Q Consensus 211 ~-~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~---- 284 (351)
. .|+|++++ ..+.+..++.+.++|+++++.+++ .||++++++|+|+|||.+|+.+++..+++++.++.++..
T Consensus 159 ~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~--~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq~~~~g~~~fi~~ 236 (348)
T PRK08445 159 PGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHL--IGMKSTATMMFGTVENDEEIIEHWERIRDLQDETGGFRAFILW 236 (348)
T ss_pred CCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCeeeeEEEecCCCCHHHHHHHHHHHHHHHHHhCCeeEEecc
Confidence 7 58999876 556664357899999999999999 999999999999999999999999999999987644432
Q ss_pred ccCC--CCCccc--ccCCCCHHHHHHHHHHHHhc
Q 018731 285 YLQP--TPLHLT--VKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 285 ~l~P--Tp~~~~--~~~~v~~~e~~~~~~~~~~~ 314 (351)
.+.| ||+... .....++++..+..++++.+
T Consensus 237 ~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~ 270 (348)
T PRK08445 237 SFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLF 270 (348)
T ss_pred ccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHh
Confidence 2244 787532 22457888888877777663
No 19
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.96 E-value=4.4e-28 Score=231.64 Aligned_cols=237 Identities=18% Similarity=0.264 Sum_probs=189.4
Q ss_pred HHHHHHhcC-CCHHHHHHHccCCCccccccCCCCceee--EEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHH
Q 018731 67 QEVKESLSS-LKLNTVCEEAQCPNIGECWNGGGDGIAT--ATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTA 140 (351)
Q Consensus 67 ~~~~~ll~~-~~l~~l~~~A~~p~i~~~~~~~~~~~~~--~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~ 140 (351)
+|++.+++. .++..|++.|+ .++++++|+ .+.. ...+++|++|+.+|.||+++...+. ..++++++.+.+
T Consensus 4 ~e~~~ll~~~~~~~~L~~~A~--~ir~~~~g~--~v~~~~~~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~ 79 (343)
T TIGR03551 4 EEALELFEARGNLFELFRLAD--ELRRDIVGD--TVTYVVNRNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERA 79 (343)
T ss_pred HHHHHHHhCCChHHHHHHHHH--HHHHHhcCC--eEEEEeeeccccccccccCCccCCCccCCCCCCcccCCHHHHHHHH
Confidence 567777765 68899999999 999998874 3432 2345679999999999999764321 346889999999
Q ss_pred HHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec---------CCCCCHHHHHHHHHcCCCeee
Q 018731 141 KAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 141 ~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~---------~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+.|+++|.|+||+.+.+. .+++.++++.|++..|++.+.++++ .+..+++.++.|++||++++.
T Consensus 80 ~~~~~~G~~~i~l~gG~~p~~~---~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 80 AEAWKAGATEVCIQGGIHPDLD---GDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMP 156 (343)
T ss_pred HHHHHCCCCEEEEEeCCCCCCC---HHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCccccc
Confidence 9999999999999988654443 6889999999999888888877542 344589999999999999998
Q ss_pred c-chhchHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCE------Eee
Q 018731 212 H-NIETVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDI------LTL 282 (351)
Q Consensus 212 ~-~ies~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~------i~i 282 (351)
. +.|++++ +++.++ ++ .++++++++++.+++ .|+.+++++|+|+|||.+|+.+++.++++++++. +++
T Consensus 157 ~~~~E~~~~~v~~~i~-~~~~~~~~~~~~i~~a~~--~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~iP~ 233 (343)
T TIGR03551 157 GTAAEILDDEVRKVIC-PDKLSTAEWIEIIKTAHK--LGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPL 233 (343)
T ss_pred CcchhhcCHHHHHhcC-CCCCCHHHHHHHHHHHHH--cCCcccceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeEEEec
Confidence 4 6788754 666665 44 499999999999999 9999999999999999999999999999999875 445
Q ss_pred ecccCC-CCCccc--ccCCCCHHHHHHHHHHHHhc
Q 018731 283 GQYLQP-TPLHLT--VKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 283 ~~~l~P-Tp~~~~--~~~~v~~~e~~~~~~~~~~~ 314 (351)
+|+.| ||++.. ....+++++..++.++++.+
T Consensus 234 -~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~ 267 (343)
T TIGR03551 234 -PFVHYNAPLYLKGMARPGPTGREDLKVHAIARIL 267 (343)
T ss_pred -cccCCCCccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 46555 887632 12456888888887777763
No 20
>PRK05927 hypothetical protein; Provisional
Probab=99.96 E-value=1.4e-28 Score=234.18 Aligned_cols=241 Identities=19% Similarity=0.238 Sum_probs=190.1
Q ss_pred chHHHHHHhcCCCHHHHHHHccCCCccccccCCCCcee--eEEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHH
Q 018731 65 RFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIA--TATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENT 139 (351)
Q Consensus 65 ~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~--~~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~ 139 (351)
...|+..+++..+++.|+..|+ .+++.++++ +.+. ....+++|+.|+.+|.||++....+. ..++++|+.+.
T Consensus 8 s~ee~l~L~~~~~l~~L~~~A~--~iR~~~~~G-~~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~ 84 (350)
T PRK05927 8 SFQEGLELFLYSPLEELQEHAD--SLRKQRYPQ-NTVTYVLDANPNYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSL 84 (350)
T ss_pred CHHHHHHHhcCCCHHHHHHHHH--HHHHHHcCC-CeEEEEcccCCccchhhhcCCccCCccCCCCCccccccCHHHHHHH
Confidence 3467888888789999999999 999988743 3333 22234579999999999999874322 24678999999
Q ss_pred HHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec---------CCCCCHHHHHHHHHcCCCee
Q 018731 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~---------~~~~~~e~l~~L~~aG~~~i 210 (351)
++++.+.|++++.|+||..++. +.+++.++++.||+.+|++.+.++++ .+..+++.++.|+++|++++
T Consensus 85 a~~~~~~G~~~i~i~gG~~p~~---~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l 161 (350)
T PRK05927 85 MQRYVSAGVKTVLLQGGVHPQL---GIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRTI 161 (350)
T ss_pred HHHHHHCCCCEEEEeCCCCCCC---CHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccC
Confidence 9999999999999999987554 47999999999999888887644432 35568999999999999999
Q ss_pred ec-chhchHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc-
Q 018731 211 AH-NIETVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL- 286 (351)
Q Consensus 211 ~~-~ies~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l- 286 (351)
.+ ++|++++ +++++. |. .+.++|+++++.+++ .|+++++++|+|+|||.+|+.+++..|++++-++-+|..|+
T Consensus 162 ~g~~~Et~~~~~~~~~~-p~k~~~~~rl~~i~~A~~--lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp 238 (350)
T PRK05927 162 PGGGAEILSERVRKIIS-PKKMGPDGWIQFHKLAHR--LGFRSTATMMFGHVESPEDILLHLQTLRDAQDENPGFYSFIP 238 (350)
T ss_pred CCCCchhCCHHHhhccC-CCCCCHHHHHHHHHHHHH--cCCCcCceeEEeeCCCHHHHHHHHHHHHHhhHhhCCeeeeee
Confidence 98 8999887 456666 43 367999999999999 99999999999999999999999999999995544443333
Q ss_pred ---CC--CCCcccccCCCCHHHHHHHHHHHHhc
Q 018731 287 ---QP--TPLHLTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 287 ---~P--Tp~~~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
+| ||+........+++++.+..++++.+
T Consensus 239 ~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~ 271 (350)
T PRK05927 239 WSYKPGNTALGRRVPHQASPELYYRILAVARIF 271 (350)
T ss_pred cCcCCCCCccccCCCCCCCHHHHHHHHHHHHHh
Confidence 23 67652222258888888877777653
No 21
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.96 E-value=5.3e-28 Score=232.63 Aligned_cols=272 Identities=19% Similarity=0.208 Sum_probs=207.1
Q ss_pred hhccCCcch--HHHHHHhcCC---CHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCCC--CC
Q 018731 58 QKAPQGQRF--QEVKESLSSL---KLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP--AP 130 (351)
Q Consensus 58 ~~~~~g~~~--~~~~~ll~~~---~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~~--~~ 130 (351)
+++.+|+.+ .|+..|++.. .++.|++.|+ .+++.++| +.+...++++.|++|+++|.||+++...+. ..
T Consensus 27 ~~~l~g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G--~~v~l~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~ 102 (366)
T TIGR02351 27 ERALNKRHLSLEDFLALLSPAAEPYLEEMAQKAK--KLTRKRFG--NTISLFTPLYLSNYCSNKCVYCGFSMSNKIKRKK 102 (366)
T ss_pred HHHHhCCCCCHHHHHHHhCCCchHHHHHHHHHHH--HHHHHHcC--CEEEEEeeeeECccccCCCCcCCCCCCCCCccCc
Confidence 456667655 5688888754 5889999999 99998887 467677788899999999999999764321 23
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
++++|+.+.++.+.+.|+++|.++||+++... +.+++.++++.|++.+|++++++. .++.+.++.|+++|++++
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~--~~e~l~eii~~Ik~~~p~i~Iei~----~lt~e~~~~Lk~aGv~r~ 176 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAA--GVEYIAEAIKLAREYFSSLAIEVQ----PLNEEEYKKLVEAGLDGV 176 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCC--CHHHHHHHHHHHHHhCCccccccc----cCCHHHHHHHHHcCCCEE
Confidence 57899999999999999999999888754332 378999999999998887777652 258999999999999999
Q ss_pred ecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeCCCCHHHHHHHHHHHHhCCC------CEE
Q 018731 211 AHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLGESDDDLKEAMADLRSIDV------DIL 280 (351)
Q Consensus 211 ~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGlgEt~e~~~~~l~~l~~lg~------d~i 280 (351)
++++||+++ .++.+. ++++++++++++++.+++ +|+. +++++|+|+||+.++..+++..++.++. ..|
T Consensus 177 ~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~--aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv 254 (366)
T TIGR02351 177 TVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAK--AGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISI 254 (366)
T ss_pred EEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHH--cCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 999999865 565543 357899999999999999 9997 9999999999999999999999888876 567
Q ss_pred eeecccCCCCCcccccCCCCHHHHHHHHHHHHhc----Ccce-----eccC----cccccccccch-HHHHHHHhh
Q 018731 281 TLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESI----GFRY-----VASG----PLVRSSYRAGE-LFVKTMVRE 342 (351)
Q Consensus 281 ~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~----G~~~-----~~~~----~~~r~~~~a~~-~~~~~~~~~ 342 (351)
++ ++++|.+..+.....+++.++.+.-...+.+ +... ...+ ++....+.|++ .++|+|++.
T Consensus 255 ~~-~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lrd~~~~~~~~~~~a~~~~~~G~y~~~ 329 (366)
T TIGR02351 255 SV-PRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFRDNVIPLGITKMSAGSSTEPGGYSSE 329 (366)
T ss_pred cc-cccccCCCCCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHHHHHHhhcceeeccCcccCCCCcCCC
Confidence 77 5788833233334678888887765544432 2221 1112 22223344454 677888864
No 22
>PRK15108 biotin synthase; Provisional
Probab=99.96 E-value=1e-26 Score=221.66 Aligned_cols=233 Identities=17% Similarity=0.250 Sum_probs=184.4
Q ss_pred hHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEee-ccCCCCCCcCcccCCCCC-----CCCCCchhHHHH
Q 018731 66 FQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSRN-----PAPPDPMEPENT 139 (351)
Q Consensus 66 ~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~-s~gC~~~C~FC~~~~~~~-----~~~~~~eei~~~ 139 (351)
..|...++.. ++..++..|+ .+++.++++ +.+...+++++ |++|+.+|.||+++.... ...++++|+.+.
T Consensus 9 ~~e~~~l~~~-~l~~l~~~A~--~ir~~~fg~-~~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~ 84 (345)
T PRK15108 9 LSQVTELFEK-PLLELLFEAQ--QVHRQHFDP-RQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLES 84 (345)
T ss_pred HHHHHHHHcc-cHHHHHHHHH--HHHHHhcCC-CEEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHH
Confidence 3567777755 8888888999 997776664 46777888876 999999999999985321 122678999999
Q ss_pred HHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH
Q 018731 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR 219 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~ 219 (351)
++.+.+.|+++|.++++... .+....+++.++++.+|+. ++.+. .+.+ .++++.++.|+++|+|++++++||...
T Consensus 85 a~~~~~~G~~~i~i~~~g~~-p~~~~~e~i~~~i~~ik~~--~i~v~-~s~G-~ls~e~l~~LkeAGld~~n~~leT~p~ 159 (345)
T PRK15108 85 ARKAKAAGSTRFCMGAAWKN-PHERDMPYLEQMVQGVKAM--GLETC-MTLG-TLSESQAQRLANAGLDYYNHNLDTSPE 159 (345)
T ss_pred HHHHHHcCCCEEEEEecCCC-CCcchHHHHHHHHHHHHhC--CCEEE-EeCC-cCCHHHHHHHHHcCCCEEeeccccChH
Confidence 99988999999988544211 1223468999999999975 45543 3444 458999999999999999999999555
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhC--CCCEEeeecccCC---CCCccc
Q 018731 220 LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI--DVDILTLGQYLQP---TPLHLT 294 (351)
Q Consensus 220 ~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~l--g~d~i~i~~~l~P---Tp~~~~ 294 (351)
.+..++ +.+++++++++++.+++ .|+.+++++|+|+|||.+|+.+++..++++ +++.+++ +++.| ||+.
T Consensus 160 ~f~~I~-~~~~~~~rl~~i~~a~~--~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~-~~~~P~~gTpl~-- 233 (345)
T PRK15108 160 FYGNII-TTRTYQERLDTLEKVRD--AGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPI-NMLVKVKGTPLA-- 233 (345)
T ss_pred hcCCCC-CCCCHHHHHHHHHHHHH--cCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEe-CCccCCCCCCCC--
Confidence 676665 47899999999999999 999999999999999999999999999999 6788999 46666 7775
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 018731 295 VKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 295 ~~~~v~~~e~~~~~~~~~~ 313 (351)
....+++.++.+.-++++.
T Consensus 234 ~~~~~~~~e~lr~iAi~Rl 252 (345)
T PRK15108 234 DNDDVDAFDFIRTIAVARI 252 (345)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 2345788888887776665
No 23
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.95 E-value=2.3e-27 Score=226.73 Aligned_cols=238 Identities=19% Similarity=0.247 Sum_probs=185.6
Q ss_pred hHHHHHHhcCCCHHHHHHHccCCCcccccc-CCCCceee--EEEEeeccCCCCCCcCcccCCCCC---CCCCCchhHHHH
Q 018731 66 FQEVKESLSSLKLNTVCEEAQCPNIGECWN-GGGDGIAT--ATIMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENT 139 (351)
Q Consensus 66 ~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~-~~~~~~~~--~~~i~~s~gC~~~C~FC~~~~~~~---~~~~~~eei~~~ 139 (351)
..++..+++..+++.|+..|+ .+++.++ | +.+.+ ...+++|++|+.+|.||+++...+ ...++++++.+.
T Consensus 5 ~~~~~~ll~~~~~~~l~~~A~--~vr~~~~~g--~~v~~~~~~~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~ 80 (340)
T TIGR03699 5 REEALELYKEADLLALGALAD--EVRRRRHPG--NIVTFVVDRNINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQK 80 (340)
T ss_pred HHHHHHHccCCcHHHHHHHHH--HHHHHhcCC--CeEEEEeecccccchhhccCCccCCcccCCCCccccCCCHHHHHHH
Confidence 356777888778999999999 9999988 6 45543 334557999999999999765432 224678999999
Q ss_pred HHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec---------CCCCCHHHHHHHHHcCCCee
Q 018731 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~---------~~~~~~e~l~~L~~aG~~~i 210 (351)
++.+.+.|+++|+|+||..+.+. .+++.++++.|++..|++.+.++++ .+..+++.++.|+++|++++
T Consensus 81 ~~~~~~~G~~~i~l~gG~~p~~~---~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~ 157 (340)
T TIGR03699 81 IEELVAYGGTQILLQGGVNPDLG---LDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSI 157 (340)
T ss_pred HHHHHHcCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcC
Confidence 99998999999999998755443 6788999999999877776543322 23335899999999999999
Q ss_pred ec-chhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee-----
Q 018731 211 AH-NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG----- 283 (351)
Q Consensus 211 ~~-~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~----- 283 (351)
.+ +.|++++ +++.+..++.++++++++++.+++ .|+.+++++|+|+|||.+++.+++.++++++++...+.
T Consensus 158 ~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~--~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~ 235 (340)
T TIGR03699 158 PGGGAEILSDRVRKIISPKKISSEEWLEVMETAHK--LGLPTTATMMFGHVETLEDRIEHLERIRELQDKTGGFTAFIPW 235 (340)
T ss_pred CCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCCccceeEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEee
Confidence 86 7899855 566554235699999999999999 99999999999999999999999999999998763332
Q ss_pred cccCC-CCCcccccCCCCHHHHHHHHHHHHhc
Q 018731 284 QYLQP-TPLHLTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 284 ~~l~P-Tp~~~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
+|+.+ ||++ .....++++..+..++++.+
T Consensus 236 ~f~p~~tpl~--~~~~~~~~e~l~~iA~~Rl~ 265 (340)
T TIGR03699 236 TFQPGNTELG--KKRPATSTEYLKVLAISRIF 265 (340)
T ss_pred cccCCCCccc--CCCCCCHHHHHHHHHHHHHc
Confidence 34422 7775 23457888888877777653
No 24
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.95 E-value=4.4e-27 Score=226.62 Aligned_cols=250 Identities=18% Similarity=0.238 Sum_probs=190.9
Q ss_pred HhhhccCCcch--HHHHHHhcCCC---HHHHHHHccCCCccccccCCCCceee--EEEEeeccCCCCCCcCcccCCCCCC
Q 018731 56 LRQKAPQGQRF--QEVKESLSSLK---LNTVCEEAQCPNIGECWNGGGDGIAT--ATIMLLGDTCTRGCRFCAVKTSRNP 128 (351)
Q Consensus 56 i~~~~~~g~~~--~~~~~ll~~~~---l~~l~~~A~~p~i~~~~~~~~~~~~~--~~~i~~s~gC~~~C~FC~~~~~~~~ 128 (351)
+.+++.+|+++ .++..+++..+ ++.|+..|+ .+++.++|+ .+.. ...+++|+.|+.+|.||++....+.
T Consensus 10 ~~~~~~~g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G~--~v~~~~~~~i~~Tn~C~~~C~fC~~~~~~~~ 85 (371)
T PRK07360 10 ILERARKGKDLSKEDALELLETTEPRRIFEILELAD--RLRKEQVGD--TVTYVVNRNINFTNICEGHCGFCAFRRDEGD 85 (371)
T ss_pred HHHHHhcCCCCCHHHHHHHhcCCChHHHHHHHHHHH--HHHHHhcCC--eEEEEeccCcccchhhhcCCccCCcccCCCC
Confidence 34677778766 46888887654 899999999 999998874 4433 2345679999999999999875322
Q ss_pred ---CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec---------CCCCCH
Q 018731 129 ---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDL 196 (351)
Q Consensus 129 ---~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~---------~~~~~~ 196 (351)
..++.+++.+.++.+.+.|++++.|+||..+.+. ..+++.++++.||+.+|++.+.++++ .+..++
T Consensus 86 ~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~--~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~ 163 (371)
T PRK07360 86 HGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAAD--SLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYE 163 (371)
T ss_pred CCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCC--cHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHH
Confidence 2367899999999999999999999999765443 26899999999999888888876543 345578
Q ss_pred HHHHHHHHcCCCeeec-chhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 197 RAVETLVHSGLDVFAH-NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~-~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
+.++.|++||++++.- +.|.+++ +++.+...+.+.++++++++.+++ .|+.+++++|+|+|||.+|+.+++.++++
T Consensus 164 e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~--~Gl~~~sg~i~G~gEt~edrv~~l~~lr~ 241 (371)
T PRK07360 164 EVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHK--LGLPTTSTMMYGHVETPEHRIDHLLILRE 241 (371)
T ss_pred HHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCCceeeEEeeCCCCHHHHHHHHHHHHH
Confidence 9999999999999963 3455544 455555224599999999999999 99999999999999999999999999999
Q ss_pred CCCCEEeee-----cccCC-CCCccc--ccCCCCHHHHHHHHHHHHh
Q 018731 275 IDVDILTLG-----QYLQP-TPLHLT--VKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 275 lg~d~i~i~-----~~l~P-Tp~~~~--~~~~v~~~e~~~~~~~~~~ 313 (351)
+++++.+|. +|+.| ||+... .....++.+..++-++++.
T Consensus 242 l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl 288 (371)
T PRK07360 242 IQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRI 288 (371)
T ss_pred hchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHH
Confidence 999874432 45534 887521 1123466666666666665
No 25
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.95 E-value=3.9e-26 Score=237.46 Aligned_cols=249 Identities=19% Similarity=0.270 Sum_probs=198.0
Q ss_pred HhhhccCCcch--HHHHHHhc--CCCHHHHHHHccCCCccccccCCCCcee--eEEEEeeccCCCCCCcCcccCCCCC--
Q 018731 56 LRQKAPQGQRF--QEVKESLS--SLKLNTVCEEAQCPNIGECWNGGGDGIA--TATIMLLGDTCTRGCRFCAVKTSRN-- 127 (351)
Q Consensus 56 i~~~~~~g~~~--~~~~~ll~--~~~l~~l~~~A~~p~i~~~~~~~~~~~~--~~~~i~~s~gC~~~C~FC~~~~~~~-- 127 (351)
|.+++.+|+++ .+++.|++ ..+++.|+..|+ .+++.++|+ .+. ....+++|+.|+.+|.||+|...+.
T Consensus 477 l~~~~~~g~~ls~~eal~Ll~~~~~~l~~L~~~Ad--~iR~~~~G~--~Vt~vvn~~In~TN~C~~~C~FCafs~~~~~~ 552 (843)
T PRK09234 477 LRAAERDPAGLTDDEALALFTADGPALEAVCRLAD--DLRRDVVGD--DVTYVVNRNINFTNICYTGCRFCAFAQRKTDA 552 (843)
T ss_pred HHHHHhcCCCCCHHHHHHHHcCCchhHHHHHHHHH--HHHHHhcCC--eEEEEEeeceecCCCCCCCCcccccccCCCCC
Confidence 44566667665 56888886 458999999999 999998874 342 2344567999999999999987532
Q ss_pred -CCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec---------CCCCCHH
Q 018731 128 -PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDLR 197 (351)
Q Consensus 128 -~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~---------~~~~~~e 197 (351)
...++++|+.+.++++.+.|+++|.++||..+++. .+++.++++.||+.+|++.|++++| .+...+|
T Consensus 553 ~~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~~---~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e 629 (843)
T PRK09234 553 DAYTLSLDEVADRAWEAWVAGATEVCMQGGIHPELP---GTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIRE 629 (843)
T ss_pred CcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcC---HHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHH
Confidence 23467899999999999999999999998865554 6899999999999999999988765 2345789
Q ss_pred HHHHHHHcCCCeeec-chhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhC
Q 018731 198 AVETLVHSGLDVFAH-NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI 275 (351)
Q Consensus 198 ~l~~L~~aG~~~i~~-~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~l 275 (351)
.+..|++||++++.+ +.|.+++ +++.++..+.+.++|+++++.+++ .||.+++++|+|+|||.+|+.+++.+|+++
T Consensus 630 ~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~--lGi~~~stmm~G~~Et~edrv~hl~~LreL 707 (843)
T PRK09234 630 WLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHE--VGLRSSSTMMYGHVDTPRHWVAHLRVLRDI 707 (843)
T ss_pred HHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHH--cCCCcccceEEcCCCCHHHHHHHHHHHHhc
Confidence 999999999999987 4455654 566666235689999999999999 999999999999999999999999999999
Q ss_pred CCC------EEeeecccCC-CCCccc--ccCCCCHHHHHHHHHHHHhc
Q 018731 276 DVD------ILTLGQYLQP-TPLHLT--VKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 276 g~d------~i~i~~~l~P-Tp~~~~--~~~~v~~~e~~~~~~~~~~~ 314 (351)
+.+ +|++ +|+.| ||++.. .....++.+..++.++++.+
T Consensus 708 q~~tgGf~~fIPl-~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~ 754 (843)
T PRK09234 708 QDRTGGFTEFVPL-PFVHQNAPLYLAGAARPGPTHRENRAVHALARIM 754 (843)
T ss_pred CcccCCeeeeeec-cccCCCCCcccccCCCCCCCHHHHHHHHHHHHHh
Confidence 985 5556 56645 776421 23457888888877777663
No 26
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.95 E-value=8.4e-26 Score=221.33 Aligned_cols=242 Identities=17% Similarity=0.271 Sum_probs=191.7
Q ss_pred HhhhccCCcch--HHHHHHhcCC---CHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCCC--
Q 018731 56 LRQKAPQGQRF--QEVKESLSSL---KLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP-- 128 (351)
Q Consensus 56 i~~~~~~g~~~--~~~~~ll~~~---~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~~-- 128 (351)
+.+++.+|+.+ .++..||+.. .++.|++.|+ .+++.+.| |.+...+++++|+.|+++|.||+|...++.
T Consensus 36 il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~--~ir~~~~G--n~I~lfapLyiSN~C~n~C~YCgfs~~n~~i~ 111 (469)
T PRK09613 36 ILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAR--EIKEKIYG--NRIVLFAPLYISNYCVNNCVYCGFRRSNKEIK 111 (469)
T ss_pred HHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHH--HHHHHHcC--CEEEEEEeccccCCCCCCCccCCCccCCCCCC
Confidence 33566666555 5688888764 4788999999 99999887 467788888999999999999999875432
Q ss_pred -CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC------CcEEEEeecCCCCCHHHHHH
Q 018731 129 -APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP------DIMVECLTSDFRGDLRAVET 201 (351)
Q Consensus 129 -~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p------~i~i~~~~~~~~~~~e~l~~ 201 (351)
..++++|+.+.++.+.+.|++++.|.||+.+ ++...+++.++++.|++..+ .++|++ +.++.+.++.
T Consensus 112 r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p--~~~~~eyi~e~i~~I~~~~~~~g~i~~v~ini----g~lt~eey~~ 185 (469)
T PRK09613 112 RKKLTQEEIREEVKALEDMGHKRLALVAGEDP--PNCDIEYILESIKTIYSTKHGNGEIRRVNVNI----APTTVENYKK 185 (469)
T ss_pred ceECCHHHHHHHHHHHHHCCCCEEEEEeCCCC--CCCCHHHHHHHHHHHHHhccccCcceeeEEEe----ecCCHHHHHH
Confidence 2367899999999999999999998777752 33347999999999998532 233332 3469999999
Q ss_pred HHHcCCCeeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeCCCCHHHHHHHHHHHHhC--
Q 018731 202 LVHSGLDVFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLGESDDDLKEAMADLRSI-- 275 (351)
Q Consensus 202 L~~aG~~~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGlgEt~e~~~~~l~~l~~l-- 275 (351)
|+++|++++.+..||.++ .++.+. +++++|++++++++.+++ +|+. |++++|+|+|++.+|...++..++.+
T Consensus 186 LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~--aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~~ 263 (469)
T PRK09613 186 LKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAME--AGIDDVGIGVLFGLYDYKFEVLGLLMHAEHLEE 263 (469)
T ss_pred HHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHH--cCCCeeCeEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999866 455543 357899999999999999 9997 99999999999999999998888877
Q ss_pred ----CCCEEeeecccCC---CCCcccccCCCCHHHHHHHHHHH
Q 018731 276 ----DVDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWKAYG 311 (351)
Q Consensus 276 ----g~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~~~~~~~ 311 (351)
|++.|++ ++++| ||+.. ....++++++.++....
T Consensus 264 ~~gvgp~tIsv-prl~P~~Gtpl~~-~~~~vsd~e~lriiA~~ 304 (469)
T PRK09613 264 RFGVGPHTISV-PRLRPADGSDLEN-FPYLVSDEDFKKIVAIL 304 (469)
T ss_pred hhCCCCccccc-cceecCCCCCccc-CCCCCCHHHHHHHHHHH
Confidence 6888999 68888 77641 12347888887654433
No 27
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.94 E-value=9.8e-26 Score=211.53 Aligned_cols=256 Identities=20% Similarity=0.230 Sum_probs=177.7
Q ss_pred CHHHHHHHccCCCccccccCCCCceeeEEEEee-ccCCCCCCcCcccCCCCC-----CCCCCchhHHHHHHHHHhCCCcE
Q 018731 77 KLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSRN-----PAPPDPMEPENTAKAIASWGVDY 150 (351)
Q Consensus 77 ~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~-s~gC~~~C~FC~~~~~~~-----~~~~~~eei~~~~~~~~~~G~~~ 150 (351)
++..+...|. .+++....+ |.+...+++.+ |++|+++|.||+++.... ...+++++++++++.+.+.|++.
T Consensus 5 ~~~~l~~~a~--~~~~~~~~~-~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~ 81 (296)
T TIGR00433 5 PLLDLLYEAF--QIHRKHFDP-RKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATR 81 (296)
T ss_pred cHHHHHHHHH--HHHHHhcCC-CEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCE
Confidence 6666776676 665553332 57778888886 999999999999976431 12256788999998888899998
Q ss_pred EEE-eccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCC
Q 018731 151 IVL-TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRA 229 (351)
Q Consensus 151 I~l-tgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~ 229 (351)
+++ ++|..+ ....-.+.+.++.+.+++. ++.+.+ +. +.+++|.++.|+++|++.+.+++|+.++.++.++ +++
T Consensus 82 ~~l~~~g~~~-~~~~~~~~~~~i~~~~~~~--~i~~~~-~~-g~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~-~~~ 155 (296)
T TIGR00433 82 FCLVASGRGP-KDREFMEYVEAMVQIVEEM--GLKTCA-TL-GLLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNII-STH 155 (296)
T ss_pred EEEEEecCCC-ChHHHHHHHHHHHHHHHhC--CCeEEe-cC-CCCCHHHHHHHHHcCCCEEEEcccCCHHHHhhcc-CCC
Confidence 755 444432 2210022344444433332 555533 33 3569999999999999999999995445676666 578
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCcccccCCCCHHHHHH
Q 018731 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPEKFDF 306 (351)
Q Consensus 230 ~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~~ 306 (351)
++++++++++.+++ .|+.+++++|+|+|||.+++.++++++++++++.+.++ .+.| |+++. ...++.+++.+
T Consensus 156 s~~~~~~ai~~l~~--~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~-~l~p~~gT~l~~--~~~~s~~~~~~ 230 (296)
T TIGR00433 156 TYDDRVDTLENAKK--AGLKVCSGGIFGLGETVEDRIGLALALANLPPESVPIN-FLVKIKGTPLAD--NKELSADDALK 230 (296)
T ss_pred CHHHHHHHHHHHHH--cCCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEEee-eeEEcCCCccCC--CCCCCHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999885 5556 77652 34567777777
Q ss_pred HHHHHHhc-C---cc-----eeccCccccc-ccc--cchHHHHHHHhhhhhh
Q 018731 307 WKAYGESI-G---FR-----YVASGPLVRS-SYR--AGELFVKTMVRERAKN 346 (351)
Q Consensus 307 ~~~~~~~~-G---~~-----~~~~~~~~r~-~~~--a~~~~~~~~~~~~~~~ 346 (351)
+.+.++.+ . .+ +...+..... ... |+..++|+||+..-++
T Consensus 231 ~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~~~~g~~ 282 (296)
T TIGR00433 231 TIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTTTGNP 282 (296)
T ss_pred HHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcccCCCCC
Confidence 66665542 1 11 1111222111 222 4457788898765543
No 28
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.94 E-value=2.6e-25 Score=209.69 Aligned_cols=207 Identities=17% Similarity=0.239 Sum_probs=163.5
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCC---CCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~---~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
...++++|++|+++|.||+++...+ ...++++++.+.++.+.+.|+++|.|+||+.+.+. .+++.++++.|++.
T Consensus 5 ~n~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~i~~~Ik~~ 81 (309)
T TIGR00423 5 VNRNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLD---IEYYEELFRAIKQE 81 (309)
T ss_pred ceeeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHHH
Confidence 4456788999999999999986432 23467899999999988899999999988754333 68899999999998
Q ss_pred CCCcEEEEeec---------CCCCCHHHHHHHHHcCCCeee-cchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 018731 180 KPDIMVECLTS---------DFRGDLRAVETLVHSGLDVFA-HNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL 248 (351)
Q Consensus 180 ~p~i~i~~~~~---------~~~~~~e~l~~L~~aG~~~i~-~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi 248 (351)
.|++.+.++++ .+..+++.++.|++||++++. .+.|++++ +++.+..++.++++++++++.+++ .|+
T Consensus 82 ~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~--~Gi 159 (309)
T TIGR00423 82 FPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR--LGI 159 (309)
T ss_pred CCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH--cCC
Confidence 88888876543 344468999999999999997 59999865 565564235699999999999999 999
Q ss_pred eEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee-----cccCC-CC-CcccccCCCCHHHHHHHHHHHHhc
Q 018731 249 ITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG-----QYLQP-TP-LHLTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 249 ~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~-----~~l~P-Tp-~~~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
.+++++|+|+|||.||+.+++.++++++.+...|. +|+.+ || +........++.+..+..++++.+
T Consensus 160 ~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~ 232 (309)
T TIGR00423 160 PTTATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRIL 232 (309)
T ss_pred CceeeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998754432 34322 77 432122557788888877777653
No 29
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=8.3e-26 Score=224.38 Aligned_cols=271 Identities=18% Similarity=0.256 Sum_probs=191.3
Q ss_pred ecCCCCC-cccCCCcceeccccCCCCCCCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCce
Q 018731 23 CESRTDT-VKMKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGI 101 (351)
Q Consensus 23 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~ 101 (351)
|-+.-.. ++......+.||+++|++...++|+.+......+....++ ... -..+ ....|..+ .++
T Consensus 146 Cmaq~~~~~~~~~~~~p~vd~v~g~~~~~~l~~~l~~~~~~~~~~~~~---~~~--~~~~--~~~~p~~~---~~~---- 211 (509)
T PRK14327 146 CMSQEESVVNKILKKYQHVDMIFGTHNIHRLPEILKEAYFSKEMVVEV---WSK--EGDV--IENLPKVR---EGN---- 211 (509)
T ss_pred chhcCcCchHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCCceeec---ccc--cccc--cccccccc---CCC----
Confidence 4443333 2344456789999999999999999886543322211111 000 0000 01112111 233
Q ss_pred eeEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC--Cc-HHHHHHHHHHHH
Q 018731 102 ATATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD--GG-SGHFARTVKAMK 177 (351)
Q Consensus 102 ~~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~--~~-~~~~~~li~~ik 177 (351)
+.+++.+++|||++|+||.++..++.. ..++++++++++.+.+.|+++|+|+|.+-..+.. .+ ...+.++++.|.
T Consensus 212 -~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~ 290 (509)
T PRK14327 212 -IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIR 290 (509)
T ss_pred -eEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHH
Confidence 789999999999999999998866543 3567999999999999999999999987433321 01 135788888887
Q ss_pred HhC-CCcEEEEeecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 178 KQK-PDIMVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 178 ~~~-p~i~i~~~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+.. +.+++.+..|.. ++++.++.++++| +.++.+++||+++ +.+.++ ++++.++++++++.+++..+|+.++++
T Consensus 291 ~~~i~~ir~~s~~P~~-i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~p~i~i~td 368 (509)
T PRK14327 291 KIDIPRVRFTTSHPRD-FDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMA-RKYTRESYLELVRKIKEAIPNVALTTD 368 (509)
T ss_pred hCCCceEEEeecCccc-CCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCcEEeee
Confidence 642 234444444544 4899999999999 7799999999865 556665 579999999999999997779999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH----HHHHHHHHHH
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP----EKFDFWKAYG 311 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~----~e~~~~~~~~ 311 (351)
+|+|| |||++++.++++++++++++.++++.|. +| ||++.. ...+++ +.+.++.++.
T Consensus 369 iIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~-~~~vp~~vk~~R~~~l~~l~ 432 (509)
T PRK14327 369 IIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKM-KDNVPMEVKKERLQRLNALV 432 (509)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhC-cCCCCHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999986555 55 888632 234544 3444444433
No 30
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=211.80 Aligned_cols=253 Identities=18% Similarity=0.282 Sum_probs=193.9
Q ss_pred hhHhhhccCCcch--HHHHHHhcCCCHHHHHHHccCCCcc-ccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCCC--
Q 018731 54 EWLRQKAPQGQRF--QEVKESLSSLKLNTVCEEAQCPNIG-ECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP-- 128 (351)
Q Consensus 54 ~~i~~~~~~g~~~--~~~~~ll~~~~l~~l~~~A~~p~i~-~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~~-- 128 (351)
+-+.+++.+++++ .+...|+...++.+|...|+ .++ ....+..+.+....++++||.|.++|.||+|...++.
T Consensus 9 ~~~~e~a~~~~~l~~~d~~~Ll~~~~~~~l~~~A~--~~r~~~~~~~~vtyv~n~~in~TN~C~~~C~fCaF~~~~~~~~ 86 (370)
T COG1060 9 DEIVEKALNGERLTREDALALLSPADLEELEELAD--KARRRKRVGDGVTYVVNRNINYTNICVNDCTFCAFYRKPGDPK 86 (370)
T ss_pred HHHHHHHhccCCCCHHHHHHHhccCcHHHHHHHHH--HHHHhhccCCcEEEEEeecCCcchhhcCCCCccccccCCCCcc
Confidence 3444677788766 46888999888888888888 777 4444543444556667889999999999999986532
Q ss_pred -CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecC---------CCCCHHH
Q 018731 129 -APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD---------FRGDLRA 198 (351)
Q Consensus 129 -~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~---------~~~~~e~ 198 (351)
..++++|+.++++++.+.|+++|.|+||+.+++. .+++.++++.|++.+|++.+.++++. ....+|.
T Consensus 87 ~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~---~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~ 163 (370)
T COG1060 87 AYTLSPEEILEEVREAVKRGITEVLIVGGEHPELS---LEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEV 163 (370)
T ss_pred ccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcc---hHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHH
Confidence 3478899999999999999999999999986665 67999999999999999888877753 2234688
Q ss_pred HHHHHHcCCCeeecchhc-hHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC
Q 018731 199 VETLVHSGLDVFAHNIET-VKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID 276 (351)
Q Consensus 199 l~~L~~aG~~~i~~~ies-~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg 276 (351)
++.|++||+|.+..+.+. +++ .++.+.+++.++++|+++++.|++ .||..++++++|.+||.+|+.+++..+++++
T Consensus 164 l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~--lGI~~tatml~Gh~E~~ed~~~hl~~ir~lQ 241 (370)
T COG1060 164 LKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHR--LGIPTTATMLLGHVETREDRIDHLEHIRDLQ 241 (370)
T ss_pred HHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCCccceeEEEecCCHHHHHHHHHHHHHHH
Confidence 999999999999986554 444 445565567899999999999999 9999999999999999999999999999886
Q ss_pred CCEEeeecc----cCC--CCCcccccCCCCHHHHHHHHHHHHh
Q 018731 277 VDILTLGQY----LQP--TPLHLTVKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 277 ~d~i~i~~~----l~P--Tp~~~~~~~~v~~~e~~~~~~~~~~ 313 (351)
-..-++..| ++| ++.........+..++.+.-++++.
T Consensus 242 ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi 284 (370)
T COG1060 242 DETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARI 284 (370)
T ss_pred HHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHH
Confidence 333222222 255 4411123345666777766666654
No 31
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=5.2e-25 Score=216.81 Aligned_cols=197 Identities=17% Similarity=0.250 Sum_probs=156.8
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC-cHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-GSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~-~~~~~~~li~~ik~~~ 180 (351)
+.+++.+++|||++|+||.++..++..+ .++++++++++.+.+.|+++|+|+|++...+.+. ....+.++++.+.+..
T Consensus 149 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~ 228 (445)
T PRK14340 149 ISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAA 228 (445)
T ss_pred cEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcC
Confidence 5788999999999999999998665443 5568999999999999999999999885444321 1235788888887654
Q ss_pred CCcEEE--EeecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee
Q 018731 181 PDIMVE--CLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM 255 (351)
Q Consensus 181 p~i~i~--~~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I 255 (351)
++.++. +..|.. ++++.++.|+++ |+..+.+++||+++ +.+.++ ++++.++..++++.+++..+|+.+.+++|
T Consensus 229 ~~~rir~~~~~p~~-l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~pgi~i~td~I 306 (445)
T PRK14340 229 PEMRIRFTTSHPKD-ISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMN-RGHTIEEYLEKIALIRSAIPGVTLSTDLI 306 (445)
T ss_pred CCcEEEEccCChhh-cCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCEEeccEE
Confidence 444444 344544 489999999997 79999999999865 555565 57899999999999999666999999999
Q ss_pred eeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH
Q 018731 256 LGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP 301 (351)
Q Consensus 256 vGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~ 301 (351)
+|+ |||++++.++++++++++++.++++.|. +| |+++......+++
T Consensus 307 vGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~ 355 (445)
T PRK14340 307 AGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPE 355 (445)
T ss_pred EECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCH
Confidence 999 9999999999999999999999987565 55 8876312344554
No 32
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=7.5e-25 Score=215.75 Aligned_cols=187 Identities=14% Similarity=0.235 Sum_probs=151.9
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p 181 (351)
..+++.+++|||++|+||.++..++..+ ++++++.++++.+.+.|+++|+|+|.+...+.. ....|.++++.+.+...
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~-~~~~l~~Ll~~l~~~~~ 232 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKE-QSTDFAGLIQMLLDETT 232 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccC-CcccHHHHHHHHhcCCC
Confidence 5788999999999999999998765533 567999999999999999999999987654432 12457888887765421
Q ss_pred --CcEEEEeecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeee
Q 018731 182 --DIMVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML 256 (351)
Q Consensus 182 --~i~i~~~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv 256 (351)
.+++....|.. ++++.++.++++| +..+.+++||+++ +.+.++ ++++.+++.++++.+++..+|+.+.+++|+
T Consensus 233 ~~~ir~~~~~p~~-~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~-R~~t~~~~~~~i~~lr~~~p~i~i~td~Iv 310 (449)
T PRK14332 233 IERIRFTSPHPKD-FPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMK-RSYSKEEFLDVVKEIRNIVPDVGITTDIIV 310 (449)
T ss_pred cceEEEECCCccc-CCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhC-CCCCHHHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 13333333443 4889999999998 8999999999865 555565 578999999999999997779999999999
Q ss_pred eC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCc
Q 018731 257 GL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 257 Gl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~ 292 (351)
|+ |||++++.++++++++++++.++++.|. +| ||.+
T Consensus 311 GfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~a~ 349 (449)
T PRK14332 311 GFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAK 349 (449)
T ss_pred eCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCChhH
Confidence 99 9999999999999999999999997776 55 8876
No 33
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.93 E-value=8.3e-25 Score=209.29 Aligned_cols=220 Identities=11% Similarity=0.148 Sum_probs=167.8
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC--CCC----CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP--APP----DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~--~~~----~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~i 176 (351)
+.++.+.-++|+.+|.||.+.+.... ... +.+++..+++.+....++.|+|.||+|..++ .+.+.++++.+
T Consensus 6 ~~~lYiHiPFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~---~~~l~~ll~~i 82 (353)
T PRK05904 6 TKHLYIHIPFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLN---DQLLDILLSTI 82 (353)
T ss_pred eeEEEEEeCCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCC---HHHHHHHHHHH
Confidence 67777789999999999999763211 111 1234444443332345789999999998776 47888899999
Q ss_pred HHhCC---CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EE
Q 018731 177 KKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TK 251 (351)
Q Consensus 177 k~~~p---~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~ 251 (351)
++.++ ++++++ .|+. ++++.++.|+++|+++|++|+||+++ +.+.++ +.++.++.+++++.+++ .|+. ++
T Consensus 83 ~~~~~~~~eitiE~-nP~~-lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~-R~~~~~~~~~ai~~lr~--~G~~~v~ 157 (353)
T PRK05904 83 KPYVDNNCEFTIEC-NPEL-ITQSQINLLKKNKVNRISLGVQSMNNNILKQLN-RTHTIQDSKEAINLLHK--NGIYNIS 157 (353)
T ss_pred HHhcCCCCeEEEEe-ccCc-CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCcEE
Confidence 88754 245554 3444 48999999999999999999999865 566665 57999999999999999 9997 99
Q ss_pred EeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH----HHHHHHHHHHHhcCcceeccCcc
Q 018731 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP----EKFDFWKAYGESIGFRYVASGPL 324 (351)
Q Consensus 252 ~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~----~e~~~~~~~~~~~G~~~~~~~~~ 324 (351)
.++|+|+ |||.+++.++++++.+++++++.++.+. .| |+++.... .+++ +.+..+.+.++..||.+|+.++|
T Consensus 158 ~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~-~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnf 236 (353)
T PRK05904 158 CDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHY-TIDEDKEAEQLNYIKAKFNKLNYKRYEVSNW 236 (353)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCC-CCChHHHHHHHHHHHHHHHHcCCcEEechhh
Confidence 9999999 9999999999999999999999997543 55 87763221 2233 34455677788899999999999
Q ss_pred cc-ccccc
Q 018731 325 VR-SSYRA 331 (351)
Q Consensus 325 ~r-~~~~a 331 (351)
++ .++.+
T Consensus 237 a~~~~~~~ 244 (353)
T PRK05904 237 TNNFKYIS 244 (353)
T ss_pred cCCCCccc
Confidence 98 44443
No 34
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.92 E-value=2.8e-23 Score=200.88 Aligned_cols=221 Identities=12% Similarity=0.144 Sum_probs=165.8
Q ss_pred EEEeeccCCCCCCcCcccCCCCCCCCC----CchhHHHHHHHH----HhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRNPAPP----DPMEPENTAKAI----ASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~~~~~----~~eei~~~~~~~----~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~i 176 (351)
++.+.-++|+.+|.||.+.+....... +.+.+.++++.. ...+++.|+|+||+|..++ .+.+.++++.+
T Consensus 8 ~lYiHiPFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~---~~~l~~ll~~l 84 (378)
T PRK05660 8 SLYIHIPWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFS---AEAIQRLLDGV 84 (378)
T ss_pred EEEEEeCCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCC---HHHHHHHHHHH
Confidence 556668999999999999764321112 223333333321 1246889999999997776 48899999999
Q ss_pred HHhCC---CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EE
Q 018731 177 KKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TK 251 (351)
Q Consensus 177 k~~~p---~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~ 251 (351)
++.++ +..+++.++...++.+.++.|+++|+++|++|+||+++ ..+.++ +.++.++.+++++.+++ .|+. ++
T Consensus 85 ~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~~~~--~G~~~v~ 161 (378)
T PRK05660 85 RARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLG-RIHGPDEAKRAAKLAQG--LGLRSFN 161 (378)
T ss_pred HHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCCeEE
Confidence 98653 23343333333358999999999999999999999876 566665 57999999999999999 9996 79
Q ss_pred EeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH----HHHHHHHHHHhcCcceeccCcc
Q 018731 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE----KFDFWKAYGESIGFRYVASGPL 324 (351)
Q Consensus 252 ~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~----e~~~~~~~~~~~G~~~~~~~~~ 324 (351)
.++|+|+ |+|.+++.++++++.++++++++++++. .| |+++.......+++ .+....+.++..||.+++..+|
T Consensus 162 ~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~f 241 (378)
T PRK05660 162 LDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAY 241 (378)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccc
Confidence 9999999 9999999999999999999999997554 45 87763222223332 3444566778889999999999
Q ss_pred ccccccc
Q 018731 325 VRSSYRA 331 (351)
Q Consensus 325 ~r~~~~a 331 (351)
++.++.+
T Consensus 242 a~~~~~~ 248 (378)
T PRK05660 242 AKPGYQC 248 (378)
T ss_pred cCCChhH
Confidence 9876543
No 35
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=1.3e-23 Score=208.12 Aligned_cols=198 Identities=15% Similarity=0.247 Sum_probs=156.3
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C-Cc-----HHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D-GG-----SGHFARTVK 174 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~-~~-----~~~~~~li~ 174 (351)
+.+++.+++|||++|+||.++..++.. ..+++++.++++.+.+.|+++|+|+|.+.+.+. + .+ ...+.++++
T Consensus 168 ~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~ 247 (467)
T PRK14329 168 VSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLE 247 (467)
T ss_pred cEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHH
Confidence 678999999999999999998866543 356799999999999999999999987643331 1 11 236888888
Q ss_pred HHHHhCCCcEEE--EeecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe
Q 018731 175 AMKKQKPDIMVE--CLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI 249 (351)
Q Consensus 175 ~ik~~~p~i~i~--~~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~ 249 (351)
.+.+..++.++. +..|+. ++++.++.|+++ |+..+.+++||+++ +.+.++ ++++.++.+++++.+++..+|+.
T Consensus 248 ~l~~~~~~~~ir~~~~~p~~-l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~-R~~t~~~~~~~i~~ir~~~~~~~ 325 (467)
T PRK14329 248 MVAEAVPDMRIRFSTSHPKD-MTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMN-RKYTREWYLDRIDAIRRIIPDCG 325 (467)
T ss_pred HHHhcCCCcEEEEecCCccc-CCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCE
Confidence 888754444444 334444 488999999998 89999999999876 555665 57899999999999998667889
Q ss_pred EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH
Q 018731 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE 302 (351)
Q Consensus 250 v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~ 302 (351)
+.+++|+|+ |||.+++.++++++++++++.++++.|. .| |+++......++++
T Consensus 326 i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~ 381 (467)
T PRK14329 326 ISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEE 381 (467)
T ss_pred EEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHH
Confidence 999999999 9999999999999999999999887665 55 88873223345553
No 36
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=5.1e-24 Score=212.45 Aligned_cols=187 Identities=18% Similarity=0.280 Sum_probs=149.8
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C-CcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D-GGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~-~~~~~~~~li~~ik~~ 179 (351)
+.+++.+++|||++|+||.++..++.. .+++++++++++.+.+.|+++|+|+|.+-..+. + .+...+.++++.+.+.
T Consensus 157 ~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i 236 (502)
T PRK14326 157 YAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEI 236 (502)
T ss_pred ceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhc
Confidence 467899999999999999999876543 356799999999999999999999987643321 0 1234678888887754
Q ss_pred CCC---cEEEEeecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPD---IMVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~---i~i~~~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
++ +++....|.. ++++.++.|+++| +..+.+++||.++ +.+.++ ++++.+++.++++.+++..+|+.+.++
T Consensus 237 -~~l~~ir~~~~~p~~-~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~-R~~t~~~~~~~v~~lr~~~~~i~i~~~ 313 (502)
T PRK14326 237 -DGLERVRFTSPHPAE-FTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMR-RSYRSERFLGILEKVRAAMPDAAITTD 313 (502)
T ss_pred -CCccEEEEeccChhh-CCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 23 3443333443 4899999999998 8999999999865 555565 579999999999999996679999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCc
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~ 292 (351)
+|+|+ |||.+++.++++++++++++.+.++.|. .| |+++
T Consensus 314 ~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~ 355 (502)
T PRK14326 314 IIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAA 355 (502)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHH
Confidence 99999 9999999999999999999988876554 45 8887
No 37
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=3.6e-23 Score=198.27 Aligned_cols=217 Identities=12% Similarity=0.181 Sum_probs=163.8
Q ss_pred EEeeccCCCCCCcCcccCCCCCCCC---CCchhHHHHHHHHHh----CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 106 IMLLGDTCTRGCRFCAVKTSRNPAP---PDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 106 ~i~~s~gC~~~C~FC~~~~~~~~~~---~~~eei~~~~~~~~~----~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
+.+.-++|+.+|.||.+........ .+.+.+.++++...+ .+++.|+|+||+|..++ .+++.++++.|++
T Consensus 3 lYiHiPFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~---~~~l~~ll~~i~~ 79 (350)
T PRK08446 3 LYIHIPFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVS---AKFYEPIFEIISP 79 (350)
T ss_pred EEEEeCCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHHHHHHHHHH
Confidence 3445789999999999976421111 234455555553322 36889999999987666 4788888888877
Q ss_pred hC-CC--cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEe
Q 018731 179 QK-PD--IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSS 253 (351)
Q Consensus 179 ~~-p~--i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~ 253 (351)
.. ++ +++++ .|+. ++++.++.|+++|+++|++|+||+++ ..+.+. +.++.+++.++++.+++ .|+. ++.+
T Consensus 80 ~~~~~~eitiE~-nP~~-~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lg-R~~~~~~~~~ai~~lr~--~g~~~v~iD 154 (350)
T PRK08446 80 YLSKDCEITTEA-NPNS-ATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLG-RIHSQKQIIKAIENAKK--AGFENISID 154 (350)
T ss_pred hcCCCceEEEEe-CCCC-CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCEEEEE
Confidence 52 23 44544 3443 58999999999999999999999976 455554 58999999999999999 9995 8999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH-HHHHHHHHHHHhcCcceeccCccccccc
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP-EKFDFWKAYGESIGFRYVASGPLVRSSY 329 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~-~e~~~~~~~~~~~G~~~~~~~~~~r~~~ 329 (351)
+|+|+ |||.+++.++++++.++++++++++.+. .| |++........+. +.+....+.+...||.+|+..+|++ ++
T Consensus 155 li~GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~yeis~fa~-~~ 233 (350)
T PRK08446 155 LIYDTPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQYEISNFGK-NY 233 (350)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCcEEEeehhhC-cc
Confidence 99999 9999999999999999999999997543 34 8876433222333 3455567788889999999999998 44
Q ss_pred cc
Q 018731 330 RA 331 (351)
Q Consensus 330 ~a 331 (351)
.+
T Consensus 234 ~~ 235 (350)
T PRK08446 234 QC 235 (350)
T ss_pred hh
Confidence 43
No 38
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.91 E-value=5.1e-23 Score=201.77 Aligned_cols=196 Identities=18% Similarity=0.315 Sum_probs=154.0
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC--cHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--GSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~--~~~~~~~li~~ik~~ 179 (351)
..+++.+++|||++|+||..+..++.. .++++++.++++.+.+.|+++|+|+|.+...+.+. +..++.++++.+++.
T Consensus 138 ~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~ 217 (414)
T TIGR01579 138 TRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQI 217 (414)
T ss_pred eEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcC
Confidence 567888999999999999998765543 35679999999999999999999998764333210 124688899988864
Q ss_pred CCCc-EEEE--eecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPDI-MVEC--LTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~i-~i~~--~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+++ ++.. ..|+. ++++.++.|+++| +..+.+++||+++ +.+.++ ++++.+++.++++.+++..+|+.+.++
T Consensus 218 -~~~~~ir~~~~~p~~-~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~-R~~~~~~~~~~v~~l~~~~~gi~i~~~ 294 (414)
T TIGR01579 218 -PGIKRIRLSSIDPED-IDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMR-RKYTRDDFLKLVNKLRSVRPDYAFGTD 294 (414)
T ss_pred -CCCcEEEEeCCChhh-CCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeeeee
Confidence 343 3333 23433 4899999999987 8899999999876 556665 578999999999999987789999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE 302 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~ 302 (351)
+|+|+ |||.|++.++++++.+++++.++++.|. .| ||++.. ...++++
T Consensus 295 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~-~~~v~~~ 345 (414)
T TIGR01579 295 IIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTM-KDKVPET 345 (414)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhhC-CCCCCHH
Confidence 99999 9999999999999999999999997554 44 888732 2344443
No 39
>PRK06267 hypothetical protein; Provisional
Probab=99.91 E-value=8e-23 Score=195.53 Aligned_cols=218 Identities=22% Similarity=0.260 Sum_probs=173.5
Q ss_pred CCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCC--CCCcCcccCCCCCC------CCCCchhHHHHHHHHHhC
Q 018731 75 SLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCT--RGCRFCAVKTSRNP------APPDPMEPENTAKAIASW 146 (351)
Q Consensus 75 ~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~--~~C~FC~~~~~~~~------~~~~~eei~~~~~~~~~~ 146 (351)
..++..|++.|+ .+++.++| |.+...++++.|++|+ .+|.||+++..++. ..+++++++++++.+.+.
T Consensus 3 ~~~~~~L~~~A~--~ir~~~fG--~~v~l~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~ 78 (350)
T PRK06267 3 SEEILENSIKAF--KLTEKHHG--NIVSLERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRI 78 (350)
T ss_pred chHHHHHHHHHH--HHHHHHcC--CeEEEEEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHc
Confidence 346788899999 99999997 5788889999999999 99999999874321 235779999999999999
Q ss_pred CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhc
Q 018731 147 GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVR 225 (351)
Q Consensus 147 G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r 225 (351)
|++.++++||.+ +. .+.+.++++.+++.. +..+.+ +. +..+.+.+..+..+|+ .+++||.++ .+..++
T Consensus 79 Gv~~~~lsgG~~--~~---~~el~~i~e~I~~~~-~~~~~~-s~-G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~ 147 (350)
T PRK06267 79 GWKLEFISGGYG--YT---TEEINDIAEMIAYIQ-GCKQYL-NV-GIIDFLNINLNEIEGV---VGAVETVNPKLHREIC 147 (350)
T ss_pred CCCEEEEecCCC--CC---HHHHHHHHHHHHHhh-CCceEe-ec-ccCCHHHHhhccccCc---eeeeecCCHHHHHhhC
Confidence 999899999985 44 367788888887652 322322 22 3347777766666665 468999865 577776
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCcccccCCCCHH
Q 018731 226 DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPE 302 (351)
Q Consensus 226 ~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~~~~~~~v~~~ 302 (351)
+++++++++++++.+++ .|+.+++++|+|+|||.+|+.++++++++++++.+.++ .+.| ||+. ....++++
T Consensus 148 -~~~s~ed~~~~l~~ak~--aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~-~L~P~pGTp~~--~~~~~s~~ 221 (350)
T PRK06267 148 -PGKPLDKIKEMLLKAKD--LGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFY-SLNPQKGTIFE--NKPSVTTL 221 (350)
T ss_pred -CCCCHHHHHHHHHHHHH--cCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEE-eeeECCCCcCC--CCCCCCHH
Confidence 67899999999999999 99999999999999999999999999999999998885 5556 7765 24568888
Q ss_pred HHHHHHHHHHh
Q 018731 303 KFDFWKAYGES 313 (351)
Q Consensus 303 e~~~~~~~~~~ 313 (351)
++.++-..++.
T Consensus 222 e~lr~ia~~Rl 232 (350)
T PRK06267 222 EYMNWVSSVRL 232 (350)
T ss_pred HHHHHHHHHHH
Confidence 99888777765
No 40
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=8.4e-23 Score=199.88 Aligned_cols=196 Identities=14% Similarity=0.233 Sum_probs=154.9
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C-CcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D-GGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~-~~~~~~~~li~~ik~~ 179 (351)
+.+++.+++|||++|+||.++..++.. ..+++++.++++.+.+.|+++|+|+|.+...+. + .+...+.++++.+++.
T Consensus 124 ~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 203 (418)
T PRK14336 124 VSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDI 203 (418)
T ss_pred eEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhc
Confidence 678999999999999999999866543 356799999999999999999999998743331 1 1124688899988874
Q ss_pred CCCc-EEEE--eecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPDI-MVEC--LTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~i-~i~~--~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+++ ++.. ..|+. ++++.++.|+++ |+..+.+++||+++ +.+.++ ++++.+++.++++.+++..+|+.+.++
T Consensus 204 -~~~~~ir~~~~~p~~-i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~pgi~i~~d 280 (418)
T PRK14336 204 -PGLLRIRFLTSHPKD-ISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMR-RGYTNQQYRELVERLKTAMPDISLQTD 280 (418)
T ss_pred -CCccEEEEeccChhh-cCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 442 4443 34544 378999999995 49999999999865 556665 578999999999999996669999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP 301 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~ 301 (351)
+|+|+ |||.+++.++++++++++++.++++.|. +| ||++......+++
T Consensus 281 ~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~ 331 (418)
T PRK14336 281 LIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPV 331 (418)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCH
Confidence 99999 9999999999999999999999987665 45 8876322344554
No 41
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.91 E-value=6.7e-23 Score=201.82 Aligned_cols=198 Identities=15% Similarity=0.222 Sum_probs=151.8
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C---------Cc--HHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D---------GG--SGHF 169 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~---------~~--~~~~ 169 (351)
.++++.+++|||++|+||.++..++.. .+++++++++++.+.+.|+++|+|+|.+...+. | +. ..++
T Consensus 139 ~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~ 218 (440)
T PRK14862 139 HYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRM 218 (440)
T ss_pred cEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHH
Confidence 678899999999999999998866543 356789999999999999999999986632121 0 00 2579
Q ss_pred HHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC--eeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCC
Q 018731 170 ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD--VFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKK 246 (351)
Q Consensus 170 ~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~--~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~ 246 (351)
.++++.+.+....+++....|.. .+++.++.|++ |+- .+.+++||.++ ..+.++ +.+++++.+++++.+++..+
T Consensus 219 ~~Ll~~l~~~~~~~r~~~~~p~~-~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~-r~~~~~~~~~~i~~lr~~~~ 295 (440)
T PRK14862 219 TDLCEALGELGAWVRLHYVYPYP-HVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMK-RPASVEKTLERIKKWREICP 295 (440)
T ss_pred HHHHHHHHhcCCEEEEecCCCCc-CCHHHHHHHhc-CCCccccccccccCCHHHHHhcC-CCCCHHHHHHHHHHHHHHCC
Confidence 99999998862212333334444 47899999999 654 67789999855 566666 57899999999999999777
Q ss_pred CCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHHHH
Q 018731 247 GLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPEKF 304 (351)
Q Consensus 247 Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~e~ 304 (351)
|+.+.+++|+|+ |||.+++.++++++++++++.++++.|. +| |+.+. ....+++++.
T Consensus 296 ~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~-~~~~v~~~~~ 355 (440)
T PRK14862 296 DLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATAND-LPDQVPEEVK 355 (440)
T ss_pred CceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhh-CCCCCCHHHH
Confidence 999999999999 9999999999999999999999986554 34 77641 1245666543
No 42
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=5.8e-23 Score=202.55 Aligned_cols=195 Identities=15% Similarity=0.220 Sum_probs=152.2
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-CC-cHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-DG-GSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~~-~~~~~~~li~~ik~~ 179 (351)
+.+++.+++|||++|+||.++..++..+ .+++++.++++.+.+.|+++|+|+|.+...+. +. ....+.++++.+.+.
T Consensus 147 ~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 226 (439)
T PRK14328 147 VKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEI 226 (439)
T ss_pred cEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhc
Confidence 6788999999999999999998665433 55689999999998999999999998743331 10 013577888888763
Q ss_pred CCCc-EEEE--eecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPDI-MVEC--LTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~i-~i~~--~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+++ ++.. ..|+. ++++.++.|+++| +.++.+++||+++ +.+.++ ++++.++++++++.+++..+|+.+.++
T Consensus 227 -~~~~~ir~~~~~P~~-i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~i~i~~d 303 (439)
T PRK14328 227 -DGLERIRFMTSHPKD-LSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMN-RHYTREYYLELVEKIKSNIPDVAITTD 303 (439)
T ss_pred -CCCcEEEEecCChhh-cCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 343 3443 33544 4899999999996 9999999999866 555565 578999999999999996679999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP 301 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~ 301 (351)
+|+|+ |||.+++.++++++++++++.++++.|. +| |+++.. ...+++
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~-~~~v~~ 353 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAKM-EDQVPE 353 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCChhhhC-CCCCCH
Confidence 99999 9999999999999999999998886554 55 887632 234444
No 43
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=1.4e-22 Score=200.88 Aligned_cols=210 Identities=16% Similarity=0.258 Sum_probs=156.7
Q ss_pred eEEEEeeccCCCCCCcCcccCCCC--CCCC---CCchhHHHHHHHHHh------CCCcEEEEeccCCCCCCCCcHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSR--NPAP---PDPMEPENTAKAIAS------WGVDYIVLTSVDRDDIPDGGSGHFAR 171 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~--~~~~---~~~eei~~~~~~~~~------~G~~~I~ltgg~~~~l~~~~~~~~~~ 171 (351)
..++.+..++|+.+|.||+++... +... .+.+.+.++++.+.. .++..|+|+||+|..++ .+++.+
T Consensus 163 ~~sLYihIPFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~---~~~L~~ 239 (488)
T PRK08207 163 EVSIYIGIPFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLT---AEELER 239 (488)
T ss_pred ceEEEEecCCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCC---HHHHHH
Confidence 456667789999999999998742 1111 123444444443321 25678999999987665 588999
Q ss_pred HHHHHHHhCCC------cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHh
Q 018731 172 TVKAMKKQKPD------IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLS 244 (351)
Q Consensus 172 li~~ik~~~p~------i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~ 244 (351)
+++.+++.+|+ +++++..|+. ++++.++.|+++|+++|++|+||+++ ..+.+. +.+++++++++++.+++
T Consensus 240 Ll~~i~~~f~~~~~~~EiTvE~grPd~-it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~ig-R~ht~e~v~~ai~~ar~- 316 (488)
T PRK08207 240 LLEEIYENFPDVKNVKEFTVEAGRPDT-ITEEKLEVLKKYGVDRISINPQTMNDETLKAIG-RHHTVEDIIEKFHLARE- 316 (488)
T ss_pred HHHHHHHhccccCCceEEEEEcCCCCC-CCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHh-
Confidence 99999887642 2344435655 49999999999999999999999876 555664 57999999999999999
Q ss_pred CCCC-eEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc--CCCCHHHH----HHHHHHHHhc
Q 018731 245 KKGL-ITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK--EYVTPEKF----DFWKAYGESI 314 (351)
Q Consensus 245 ~~Gi-~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~--~~v~~~e~----~~~~~~~~~~ 314 (351)
.|+ .+++++|+|+ |||.+++.++++++.++++++++++.+. .| |+++.... ...+.++. +...+.++.+
T Consensus 317 -~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~ 395 (488)
T PRK08207 317 -MGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKEL 395 (488)
T ss_pred -CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHc
Confidence 999 7999999999 9999999999999999999999996443 34 77763221 22334333 3345566778
Q ss_pred Cccee
Q 018731 315 GFRYV 319 (351)
Q Consensus 315 G~~~~ 319 (351)
||..|
T Consensus 396 Gy~~Y 400 (488)
T PRK08207 396 GYVPY 400 (488)
T ss_pred CCHhh
Confidence 99887
No 44
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=1e-22 Score=199.40 Aligned_cols=195 Identities=14% Similarity=0.191 Sum_probs=152.8
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC-CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC-----CcHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD-----GGSGHFARTVKAM 176 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~-----~~~~~~~~li~~i 176 (351)
+.+++.+++|||++|+||.++..++. ...++++++++++.+.+.|+++|+|+|.+...+.. .....+.++++.+
T Consensus 127 ~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l 206 (420)
T PRK14339 127 YKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKL 206 (420)
T ss_pred eEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHH
Confidence 68999999999999999999987654 33567899999999999999999999977433311 0113578888888
Q ss_pred HHhCCCc-EEEE--eecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 018731 177 KKQKPDI-MVEC--LTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (351)
Q Consensus 177 k~~~p~i-~i~~--~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (351)
.+. +++ ++.. ..|.. .+++.++.|+++ |+..+.+++||+++ +.+.++ ++++.++.+++++.+++..+|+.+
T Consensus 207 ~~~-~g~~~ir~~s~~p~~-~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~~~~~~~v~~lr~~~p~i~i 283 (420)
T PRK14339 207 SEI-EGLERIRFTSPHPLH-MDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMK-RGYTKEWFLNRAEKLRALVPEVSI 283 (420)
T ss_pred hcC-CCccEEEECCCChhh-cCHHHHHHHHcCCCccCceEeCCccCCHHHHHhcc-CCCCHHHHHHHHHHHHHHCCCCEE
Confidence 763 343 3433 23333 589999999998 58999999999865 555565 578999999999999996679999
Q ss_pred EEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH
Q 018731 251 KSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP 301 (351)
Q Consensus 251 ~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~ 301 (351)
.+++|+|+ |||++++.++++++.+++++.++++.|. +| ||.+.. ...+++
T Consensus 284 ~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~a~~~-~~~v~~ 336 (420)
T PRK14339 284 STDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAW-KNQVDE 336 (420)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCchhhC-CCCCCH
Confidence 99999999 9999999999999999999988887665 45 887621 234544
No 45
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=8.4e-23 Score=201.26 Aligned_cols=188 Identities=15% Similarity=0.217 Sum_probs=150.3
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC-cHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-GSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~-~~~~~~~li~~ik~~~ 180 (351)
..+++.+++|||++|+||.++..++.. ..+++++.++++.+.+.|+++|+|+|.+...+... ....+.++++.+.+.
T Consensus 146 ~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~- 224 (437)
T PRK14331 146 YCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEI- 224 (437)
T ss_pred cEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcC-
Confidence 578889999999999999998766543 35678999999999999999999998775433210 013577888888764
Q ss_pred CC---cEEEEeecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee
Q 018731 181 PD---IMVECLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (351)
Q Consensus 181 p~---i~i~~~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (351)
++ +.+....|.. ++++.++.|+++ |+..+.+++||+++ +.+.++ ++++.+++.++++.+++..+|+.+.+++
T Consensus 225 ~g~~~i~~~~~~p~~-l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~~gi~i~~d~ 302 (437)
T PRK14331 225 DGVERIRFTTGHPRD-LDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMD-RGYTKEEYLEKIELLKEYIPDITFSTDI 302 (437)
T ss_pred CCccEEEEeccCccc-CCHHHHHHHHcCCccCCceecccccCChHHHHHcC-CCCCHHHHHHHHHHHHHhCCCCEEecCE
Confidence 33 3343333443 589999999998 59999999999866 556665 5789999999999999955699999999
Q ss_pred eeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcc
Q 018731 255 MLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHL 293 (351)
Q Consensus 255 IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~ 293 (351)
|+|+ |||++++.++++++++++++.++++.|. .| |+++.
T Consensus 303 IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~ 344 (437)
T PRK14331 303 IVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAY 344 (437)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhh
Confidence 9999 9999999999999999999998886554 45 88863
No 46
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.91 E-value=8.2e-23 Score=193.59 Aligned_cols=202 Identities=14% Similarity=0.201 Sum_probs=155.7
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC---CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-------------CCcH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA---PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-------------DGGS 166 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~---~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-------------~~~~ 166 (351)
...++++||+|+.+|.||+++..++.. .++++++.+.++.+.+.|+++++++||..++.. +...
T Consensus 4 ~n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~ 83 (322)
T TIGR03550 4 RNVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTL 83 (322)
T ss_pred ceEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHH
Confidence 467788999999999999998865432 467899999999999999999999988865442 0013
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhc---CCCCCHHHHHHHHHHHH
Q 018731 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVR---DPRAGYEQSLEVLKHAK 242 (351)
Q Consensus 167 ~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r---~~~~~~~~~l~~i~~~~ 242 (351)
+++.++++.+++.. ++... .+++. ++++.++.|+++|++ +.+++||.++ +.+.++ .|+.++++++++++.++
T Consensus 84 ~~~~~~~~~i~~e~-~~~~~-~~~g~-lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~ 159 (322)
T TIGR03550 84 EYLRELCELALEET-GLLPH-TNPGV-MSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG 159 (322)
T ss_pred HHHHHHHHHHHHhc-CCccc-cCCCC-CCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 67888888888652 33222 23443 599999999999987 5889999865 332222 24557889999999999
Q ss_pred HhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC-----CCEEeeecccCC---CCCcccccCCCCHHHHHHHHHHHHh
Q 018731 243 LSKKGLITKSSIMLGLGESDDDLKEAMADLRSID-----VDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 243 ~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg-----~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~~~~~~~~~ 313 (351)
+ .|+.+++++|+|+|||.+|+.+++.++++++ ++.+.+.+| +| ||++ ....+++.++.++.+.++.
T Consensus 160 ~--~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f-~P~~gTpl~--~~~~~s~~e~lr~iAv~Rl 233 (322)
T TIGR03550 160 R--LKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNF-RAKPGTPME--NHPEPSLEEMLRTVAVARL 233 (322)
T ss_pred H--cCCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCcc-ccCCCCCcc--CCCCCCHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999998 555554445 45 8875 2456788888887777765
No 47
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.91 E-value=1.6e-22 Score=194.64 Aligned_cols=219 Identities=12% Similarity=0.201 Sum_probs=160.7
Q ss_pred EEeeccCCCCCCcCcccCCCCCCCC---CCchhHHHHHHH-HHhCC---CcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 106 IMLLGDTCTRGCRFCAVKTSRNPAP---PDPMEPENTAKA-IASWG---VDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 106 ~i~~s~gC~~~C~FC~~~~~~~~~~---~~~eei~~~~~~-~~~~G---~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
+.+.-++|+.+|.||.+.+...... .+.+.+.++++. +...| ++.|+|+||+|..++ .+++.++++.|++
T Consensus 3 lYiHiPFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~---~~~l~~ll~~i~~ 79 (360)
T TIGR00539 3 LYIHIPFCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLS---VEAFERLFESIYQ 79 (360)
T ss_pred EEEEeCCCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCC---HHHHHHHHHHHHH
Confidence 3445789999999999976521111 123333333332 23334 789999999987665 4788888888876
Q ss_pred hC---CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEe
Q 018731 179 QK---PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSS 253 (351)
Q Consensus 179 ~~---p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~ 253 (351)
.+ ++..+.+.++...++++.++.|+++|+++|++|+||+++ ..+.+. +.+++++++++++.+++ .|+. ++.+
T Consensus 80 ~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lg-R~~~~~~~~~ai~~l~~--~G~~~v~~d 156 (360)
T TIGR00539 80 HASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLG-RQHSAKNIAPAIETALK--SGIENISLD 156 (360)
T ss_pred hCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhC-CCCCHHHHHHHHHHHHH--cCCCeEEEe
Confidence 54 233444333333359999999999999999999999875 566664 67999999999999999 9995 8999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHHHHH----HHHHHHHhcCcceeccCcccc
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPEKFD----FWKAYGESIGFRYVASGPLVR 326 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~e~~----~~~~~~~~~G~~~~~~~~~~r 326 (351)
+|+|+ |||.+++.++++++.++++++++++.+. .| |+++.......+.++.. ...+.+...||.+++..++++
T Consensus 157 li~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~ 236 (360)
T TIGR00539 157 LMYGLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQYEVSNYAK 236 (360)
T ss_pred ccCCCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCceeehhhhcC
Confidence 99999 9999999999999999999999996443 34 77763322333433322 344567778999999999988
Q ss_pred cccc
Q 018731 327 SSYR 330 (351)
Q Consensus 327 ~~~~ 330 (351)
.++.
T Consensus 237 ~~~~ 240 (360)
T TIGR00539 237 AGYQ 240 (360)
T ss_pred CCHH
Confidence 7654
No 48
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.91 E-value=1.7e-22 Score=210.38 Aligned_cols=247 Identities=18% Similarity=0.205 Sum_probs=189.3
Q ss_pred HhhhccCCcch--HHHHHHh--cCCCHHHHHHHccCCCccccccCC---CCceee--EEEEeeccCCCCCCcCcccCCCC
Q 018731 56 LRQKAPQGQRF--QEVKESL--SSLKLNTVCEEAQCPNIGECWNGG---GDGIAT--ATIMLLGDTCTRGCRFCAVKTSR 126 (351)
Q Consensus 56 i~~~~~~g~~~--~~~~~ll--~~~~l~~l~~~A~~p~i~~~~~~~---~~~~~~--~~~i~~s~gC~~~C~FC~~~~~~ 126 (351)
+.+++.+|+.+ .|+..|+ +..++..|+..|+ .+++.++|+ .+.+.+ ..++++|+.|..+|.||+|....
T Consensus 17 ~l~k~~~g~~ls~eEa~~Ll~~~~~dl~~L~~~A~--~vR~~~~G~~~~~~~Vty~~n~~In~Tn~C~~~C~YCaF~~~~ 94 (843)
T PRK09234 17 ALRRARDGVTLDVDEAAVLLTARGDDLADLCASAA--RVRDAGLGAAGRPGVVTYSRKVFIPLTRLCRDRCHYCTFATVP 94 (843)
T ss_pred HHHHHHcCCCCCHHHHHHHhcCCCccHHHHHHHHH--HHHHHHcCCcccCceEEEEeEEEecCCCCCCCCCCcCCCccCC
Confidence 34566777666 4577777 3568999999999 999988763 002322 35677899999999999998744
Q ss_pred CC---CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-------------CCcHHHHHHHHHHHHHhCCCcEEEEeec
Q 018731 127 NP---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-------------DGGSGHFARTVKAMKKQKPDIMVECLTS 190 (351)
Q Consensus 127 ~~---~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-------------~~~~~~~~~li~~ik~~~p~i~i~~~~~ 190 (351)
+. ..++++|+.+.+++..+.|++++.|+||+.++.. +...+++.++++.|++.. ++..++ +.
T Consensus 95 ~~~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~-gl~p~i-~~ 172 (843)
T PRK09234 95 GKLEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEET-GLLPHL-NP 172 (843)
T ss_pred CCCccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhc-CCCcee-ee
Confidence 32 2367899999999999999999999999876542 112589999999999753 332222 22
Q ss_pred CCCCCHHHHHHHHHcCCCeeecchhchH-HHHh------hhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHH
Q 018731 191 DFRGDLRAVETLVHSGLDVFAHNIETVK-RLQR------IVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDD 263 (351)
Q Consensus 191 ~~~~~~e~l~~L~~aG~~~i~~~ies~~-~~~~------~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e 263 (351)
+.++.+.++.|+++|++ +.+++||.. +++. ... |++.+++++++++.+++ .||.+++++|+|+|||.+
T Consensus 173 -G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~-P~K~~~~RL~ti~~A~~--lGi~~tsG~L~GiGEt~e 247 (843)
T PRK09234 173 -GVMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGS-PDKDPAVRLRVLEDAGR--LSVPFTTGILIGIGETLA 247 (843)
T ss_pred -CCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCC-CCCCHHHHHHHHHHHHH--cCCCccceEEEECCCCHH
Confidence 34689999999999997 679999954 4542 222 56789999999999999 999999999999999999
Q ss_pred HHHHHHHHHHhC-----CCCEEeeeccc-CC-CCCcccccCCCCHHHHHHHHHHHHh
Q 018731 264 DLKEAMADLRSI-----DVDILTLGQYL-QP-TPLHLTVKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 264 ~~~~~l~~l~~l-----g~d~i~i~~~l-~P-Tp~~~~~~~~v~~~e~~~~~~~~~~ 313 (351)
|+.+++..|+++ +++.+.+.+|. .| ||+. .....+++++.+..++++.
T Consensus 248 dRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~--~~~~~s~~e~Lr~iAvaRl 302 (843)
T PRK09234 248 ERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMA--GVPDAGLEELLATIAVARL 302 (843)
T ss_pred HHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCC--CCCCCCHHHHHHHHHHHHH
Confidence 999999999999 46667775555 22 8875 3456888999888888776
No 49
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=1.5e-22 Score=200.20 Aligned_cols=197 Identities=15% Similarity=0.239 Sum_probs=153.0
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC----CcHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD----GGSGHFARTVKAMK 177 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~----~~~~~~~~li~~ik 177 (351)
+.+++.+++|||++|+||.++..++.. .++++++.++++.+.+.|+++|+|+|.+...+.. +....+.++++.+.
T Consensus 152 ~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~ 231 (455)
T PRK14335 152 FQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIV 231 (455)
T ss_pred ceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHH
Confidence 678899999999999999999866543 3567899999999999999999999987543321 11125788888875
Q ss_pred Hh---CCCc-EEEE--eecCCCCCHHHHHHHHH--cCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 018731 178 KQ---KPDI-MVEC--LTSDFRGDLRAVETLVH--SGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL 248 (351)
Q Consensus 178 ~~---~p~i-~i~~--~~~~~~~~~e~l~~L~~--aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi 248 (351)
+. .+++ ++.. ..|+. ++++.++.|++ +|+..+.+++||+++ +.+.++ ++++.+++.++++.+++..+|+
T Consensus 232 ~~~~~~~~i~~ir~~s~~p~~-i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~-R~~t~e~~~~~v~~ir~~~pgi 309 (455)
T PRK14335 232 RRAEVTDQIRWIRFMSSHPKD-LSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMN-RSYTREHYLSLVGKLKASIPNV 309 (455)
T ss_pred HhhcccCCceEEEEeecCccc-CCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcC-CCCCHHHHHHHHHHHHHhCCCC
Confidence 32 1233 3332 23443 48999999998 489999999999765 555665 5789999999999999966699
Q ss_pred eEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH
Q 018731 249 ITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE 302 (351)
Q Consensus 249 ~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~ 302 (351)
.+.+++|+|+ |||.+++.++++++++++++.++++.|. +| ||++. ....++++
T Consensus 310 ~i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~-~~~~v~~~ 365 (455)
T PRK14335 310 ALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYD-FPDRIPDE 365 (455)
T ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhh-CCCCCCHH
Confidence 9999999999 9999999999999999999999997555 45 88873 22345553
No 50
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=1.5e-22 Score=197.25 Aligned_cols=221 Identities=10% Similarity=0.168 Sum_probs=166.2
Q ss_pred eEEEEeeccCCCCCCcCcccCCCC-CC-C--------CCCchhHHHHHHHHHh--CCCcEEEEeccCCCCCCCCcHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSR-NP-A--------PPDPMEPENTAKAIAS--WGVDYIVLTSVDRDDIPDGGSGHFA 170 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~-~~-~--------~~~~eei~~~~~~~~~--~G~~~I~ltgg~~~~l~~~~~~~~~ 170 (351)
..++.+.-++|+.+|.||.++... +. . ..+.+.+.++++.... .+++.|+|.||+|..++ .+++.
T Consensus 10 ~~~lYiHiPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~---~~~l~ 86 (400)
T PRK07379 10 PTSAYIHIPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLS---VEQLE 86 (400)
T ss_pred ccEEEEEeccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHH
Confidence 345666789999999999997531 11 0 1123445555544322 35789999999987665 58899
Q ss_pred HHHHHHHHhCC-----CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHh
Q 018731 171 RTVKAMKKQKP-----DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLS 244 (351)
Q Consensus 171 ~li~~ik~~~p-----~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~ 244 (351)
++++.|++.++ ++++++ .|+. ++++.++.|+++|+++|++|+||+++ ..+.+. +.++.++.+++++.+++
T Consensus 87 ~ll~~i~~~~~~~~~~eit~E~-~P~~-lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~-R~~~~~~~~~ai~~l~~- 162 (400)
T PRK07379 87 RILTTLDQRFGIAPDAEISLEI-DPGT-FDLEQLQGYRSLGVNRVSLGVQAFQDELLALCG-RSHRVKDIFAAVDLIHQ- 162 (400)
T ss_pred HHHHHHHHhCCCCCCCEEEEEe-CCCc-CCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhC-CCCCHHHHHHHHHHHHH-
Confidence 99999988642 234444 3444 48999999999999999999999876 455554 58999999999999999
Q ss_pred CCCCe-EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc----CCCCHHH----HHHHHHHHH
Q 018731 245 KKGLI-TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK----EYVTPEK----FDFWKAYGE 312 (351)
Q Consensus 245 ~~Gi~-v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~----~~v~~~e----~~~~~~~~~ 312 (351)
.|+. ++.++|+|+ |||.+++.++++++.++++++++++.+. .| |+++.... ...+.++ +....+.+.
T Consensus 163 -~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~ 241 (400)
T PRK07379 163 -AGIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILT 241 (400)
T ss_pred -cCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9998 999999999 9999999999999999999999997443 45 87763221 1233333 334566778
Q ss_pred hcCcceeccCccccccccc
Q 018731 313 SIGFRYVASGPLVRSSYRA 331 (351)
Q Consensus 313 ~~G~~~~~~~~~~r~~~~a 331 (351)
+.||.+|+..+|++.++.+
T Consensus 242 ~~Gy~~yeisnfa~~g~~~ 260 (400)
T PRK07379 242 QAGYEHYEISNYAKPGYQC 260 (400)
T ss_pred HcCCceeeeeheECCChHH
Confidence 8899999999999876554
No 51
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=2.2e-22 Score=198.82 Aligned_cols=196 Identities=15% Similarity=0.230 Sum_probs=153.8
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC-CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC----CcHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD----GGSGHFARTVKAMK 177 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~----~~~~~~~~li~~ik 177 (351)
..+++.+++|||++|+||.++..++. ...+++++.++++.+.+.|+++|+|+|.+...+.. ....++.++++.+.
T Consensus 147 ~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~ 226 (444)
T PRK14325 147 PSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVA 226 (444)
T ss_pred ceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHH
Confidence 56778889999999999999876543 34567999999999999999999999876433311 11247888998887
Q ss_pred HhCCC---cEEEEeecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 018731 178 KQKPD---IMVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 178 ~~~p~---i~i~~~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (351)
+. ++ +++.+..|.. ++++.++.|+++| +..+.+++||+++ +.+.++ ++++.+++.++++.+++..+|+.+.
T Consensus 227 ~~-~~~~~ir~~~~~p~~-~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~-R~~~~~~~~~~i~~lr~~~~gi~v~ 303 (444)
T PRK14325 227 AI-DGIERIRYTTSHPRD-FTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMN-RGHTALEYKSIIRKLRAARPDIAIS 303 (444)
T ss_pred hc-CCccEEEEccCCccc-CCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 64 34 3333333443 4899999999986 8999999999876 555565 5789999999999999855699999
Q ss_pred EeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH
Q 018731 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE 302 (351)
Q Consensus 252 ~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~ 302 (351)
+++|+|+ |||.+++.++++++++++++.++++.|. .| |+++.. ...++++
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~-~~~v~~~ 356 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTPAADL-PDDVPEE 356 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCCCCCchhhC-CCCCCHH
Confidence 9999999 9999999999999999999999886554 45 888732 2345553
No 52
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.90 E-value=2.6e-22 Score=197.60 Aligned_cols=198 Identities=17% Similarity=0.257 Sum_probs=153.2
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC--CcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD--GGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~--~~~~~~~~li~~ik~~ 179 (351)
.++++.+++|||++|+||.++..++..+ ++++++.++++.+.+.|+++|+|+|.+...+.. .+.+++.++++.+.+.
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~ 214 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKV 214 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhc
Confidence 5678999999999999999987654433 567899999999999999999998765332210 0125789999999875
Q ss_pred CCCc-E--EEEeecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPDI-M--VECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~i-~--i~~~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+++ + +....|+. ++++.++.|+++| +..+.+++||+++ ..+.++ ++++.++.+++++.+++..+|+.+.++
T Consensus 215 -~~i~~~r~~~~~p~~-~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~-k~~~~~~~~~~i~~l~~~~~~i~i~~~ 291 (430)
T TIGR01125 215 -GGIYWIRMHYLYPDE-LTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMR-RPGSGEQQLDFIERLREKCPDAVLRTT 291 (430)
T ss_pred -CCccEEEEccCCccc-CCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCC-CCCCHHHHHHHHHHHHHhCCCCeEeEE
Confidence 222 2 22223443 4899999999996 8899999999865 566665 578999999999999995558889999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHHHH
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPEKF 304 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~e~ 304 (351)
+|+|+ |||.+++.++++++++++++.++++.|. .| |+++.. ...+++++.
T Consensus 292 ~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~~~~~-~~~i~~~~~ 344 (430)
T TIGR01125 292 FIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFAL-PDQVPEEVK 344 (430)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCccccC-CCCCCHHHH
Confidence 99999 9999999999999999999999997555 44 877632 234555443
No 53
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.90 E-value=1.7e-22 Score=195.64 Aligned_cols=219 Identities=14% Similarity=0.204 Sum_probs=164.3
Q ss_pred EEEeeccCCCCCCcCcccCCCC-CC------CCCCchhHHHHHHHHHh------CCCcEEEEeccCCCCCCCCcHHHHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSR-NP------APPDPMEPENTAKAIAS------WGVDYIVLTSVDRDDIPDGGSGHFAR 171 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~-~~------~~~~~eei~~~~~~~~~------~G~~~I~ltgg~~~~l~~~~~~~~~~ 171 (351)
++.+.-++|+.+|.||.++... .. ...+.+.+.++++...+ ..++.|+|.||+|..++ .+.+.+
T Consensus 4 ~lYiHiPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~ 80 (375)
T PRK05628 4 GVYVHVPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLG---AEGLAR 80 (375)
T ss_pred EEEEEeCCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCC---HHHHHH
Confidence 4455678999999999997632 11 11234566666665432 23778999999987666 478889
Q ss_pred HHHHHHHhC---CCcEEEEe-ecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCC
Q 018731 172 TVKAMKKQK---PDIMVECL-TSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKK 246 (351)
Q Consensus 172 li~~ik~~~---p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~ 246 (351)
+++.+++.+ ++..+.+. .|+. ++++.++.|+++|+++|++|+||+++ ..+.++ +.++.++.+++++.+++ .
T Consensus 81 ll~~i~~~~~~~~~~e~t~e~~p~~-i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~s~~~~~~a~~~l~~--~ 156 (375)
T PRK05628 81 VLDAVRDTFGLAPGAEVTTEANPES-TSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLD-RTHTPGRAVAAAREARA--A 156 (375)
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCCC-CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--c
Confidence 999888754 33344332 3444 59999999999999999999999876 556665 57999999999999999 9
Q ss_pred CCe-EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc----CCCCHH----HHHHHHHHHHhc
Q 018731 247 GLI-TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK----EYVTPE----KFDFWKAYGESI 314 (351)
Q Consensus 247 Gi~-v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~----~~v~~~----e~~~~~~~~~~~ 314 (351)
|+. ++.++|+|+ |||.+++.++++++.+++++++.++.+. .| |+++.... ..++.+ .+....+.++..
T Consensus 157 g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~ 236 (375)
T PRK05628 157 GFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAA 236 (375)
T ss_pred CCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHc
Confidence 998 999999999 9999999999999999999999987544 44 87763211 112222 333456677788
Q ss_pred CcceeccCcccccccc
Q 018731 315 GFRYVASGPLVRSSYR 330 (351)
Q Consensus 315 G~~~~~~~~~~r~~~~ 330 (351)
||.+++..+|++.++.
T Consensus 237 G~~~ye~s~fa~~~~~ 252 (375)
T PRK05628 237 GFDWYEVSNWARPGGE 252 (375)
T ss_pred CCCeeeeccccCCCcc
Confidence 9999999999886544
No 54
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=1.1e-22 Score=197.11 Aligned_cols=216 Identities=15% Similarity=0.224 Sum_probs=162.5
Q ss_pred eeccCCCCCCcCcccCCC--CCC-CCCCchhHHHHHHHHHhC---CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC
Q 018731 108 LLGDTCTRGCRFCAVKTS--RNP-APPDPMEPENTAKAIASW---GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~--~~~-~~~~~eei~~~~~~~~~~---G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p 181 (351)
+.-++|+.+|.||.++.. .+. ...+++.+.++++.+... +++.|+|+||+|..++ .+++.++++.+++.++
T Consensus 6 ihiPfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~---~~~l~~ll~~i~~~~~ 82 (377)
T PRK08599 6 IHIPFCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALS---AEQLERLLTAIHRNLP 82 (377)
T ss_pred EEeCCcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCC---HHHHHHHHHHHHHhCC
Confidence 345679999999998753 211 223556677777655444 5778999999986555 4789999999988642
Q ss_pred ---CcEEEEe-ecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeee
Q 018731 182 ---DIMVECL-TSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIM 255 (351)
Q Consensus 182 ---~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~I 255 (351)
...+.+. .|+. ++++.++.|+++|++++++|+||+++ ..+.++ +.++.+++.++++.+++ .|+. ++.++|
T Consensus 83 ~~~~~eit~e~~p~~-l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~-r~~~~~~~~~~i~~l~~--~g~~~v~~dli 158 (377)
T PRK08599 83 LSGLEEFTFEANPGD-LTKEKLQVLKDSGVNRISLGVQTFNDELLKKIG-RTHNEEDVYEAIANAKK--AGFDNISIDLI 158 (377)
T ss_pred CCCCCEEEEEeCCCC-CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCcEEEeee
Confidence 2234433 3443 58999999999999999999999875 566665 58999999999999999 9997 899999
Q ss_pred eeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc-C---CCCH----HHHHHHHHHHHhcCcceeccCcc
Q 018731 256 LGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK-E---YVTP----EKFDFWKAYGESIGFRYVASGPL 324 (351)
Q Consensus 256 vGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~-~---~v~~----~e~~~~~~~~~~~G~~~~~~~~~ 324 (351)
+|+ |||.+++.++++++.++++++++++.+. .| |++..... . ..+. +.+....+.+...||.+++..+|
T Consensus 159 ~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~~~~~~f 238 (377)
T PRK08599 159 YALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQYEISNF 238 (377)
T ss_pred cCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcEeeeeee
Confidence 999 9999999999999999999999986443 45 77753211 1 1122 23444566777789999999999
Q ss_pred cccccc
Q 018731 325 VRSSYR 330 (351)
Q Consensus 325 ~r~~~~ 330 (351)
++.++.
T Consensus 239 a~~~~~ 244 (377)
T PRK08599 239 AKPGFE 244 (377)
T ss_pred eCCChH
Confidence 887654
No 55
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=3.1e-22 Score=193.75 Aligned_cols=221 Identities=12% Similarity=0.188 Sum_probs=161.5
Q ss_pred EEEeeccCCCCCCcCcccCCCCCCCC---CCchhHHHHHHHHH-hCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRNPAP---PDPMEPENTAKAIA-SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~~~~---~~~eei~~~~~~~~-~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
++.+.-++|+.+|.||.++...+... .+.+.+.++++.+. ..+++.|+|+||+|..++ .+.+..+++.+++..
T Consensus 5 ~lYiHiPfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~---~~~l~~L~~~i~~~~ 81 (374)
T PRK05799 5 SLYIHIPFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLS---LEALEILKETIKKLN 81 (374)
T ss_pred EEEEEeCCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCC---HHHHHHHHHHHHhCC
Confidence 45566889999999999987533221 12344555554332 235788999999986555 366667777776531
Q ss_pred --CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeeee
Q 018731 181 --PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIML 256 (351)
Q Consensus 181 --p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~Iv 256 (351)
+++.+.+.++...++++.++.|+++|+++|++|+||+++ ..+.+. +.++.++.+++++.+++ .|+. +++++|+
T Consensus 82 ~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~-R~~~~~~~~~ai~~l~~--~g~~~v~~dli~ 158 (374)
T PRK05799 82 KKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLG-RIHTFEEFLENYKLARK--LGFNNINVDLMF 158 (374)
T ss_pred CCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCcEEEEeec
Confidence 234444433323359999999999999999999999876 455554 57899999999999999 9996 9999999
Q ss_pred eC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc----CCCCHHH----HHHHHHHHHhcCcceeccCccc
Q 018731 257 GL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK----EYVTPEK----FDFWKAYGESIGFRYVASGPLV 325 (351)
Q Consensus 257 Gl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~----~~v~~~e----~~~~~~~~~~~G~~~~~~~~~~ 325 (351)
|+ |||.+++.++++++.++++++++++.+. .| |+++.... ...+.++ +....+.+.+.||.+++.++|+
T Consensus 159 GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~fa 238 (374)
T PRK05799 159 GLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNFA 238 (374)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeeeE
Confidence 99 9999999999999999999999997543 45 87753211 1223332 3345567778899999999999
Q ss_pred cccccc
Q 018731 326 RSSYRA 331 (351)
Q Consensus 326 r~~~~a 331 (351)
+.++.+
T Consensus 239 ~~~~~~ 244 (374)
T PRK05799 239 KPGKEC 244 (374)
T ss_pred CCCcch
Confidence 876543
No 56
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=2e-22 Score=198.84 Aligned_cols=196 Identities=13% Similarity=0.262 Sum_probs=153.7
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C--CcHHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D--GGSGHFARTVKAMKK 178 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~--~~~~~~~~li~~ik~ 178 (351)
..+++.+++|||++|+||.++..++..+ .++++++++++.+.+.|+++|+|+|.+...+. + .+...+.++++.|.+
T Consensus 148 ~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~ 227 (446)
T PRK14337 148 ASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAA 227 (446)
T ss_pred cEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHh
Confidence 6789999999999999999988665433 56789999999999999999999987643331 1 011367888888876
Q ss_pred hCCCc-EEE--EeecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q 018731 179 QKPDI-MVE--CLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS 252 (351)
Q Consensus 179 ~~p~i-~i~--~~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~ 252 (351)
. +++ ++. ...|.. ++++.++.|+++ |+.++.+++||+++ +.+.++ ++++.+++.++++.+++..+|+.+.+
T Consensus 228 ~-~g~~~ir~~~~~p~~-i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~~~i~i~~ 304 (446)
T PRK14337 228 L-PGLERLRFTTPHPKD-IAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMG-RKYDMARYLDIVTDLRAARPDIALTT 304 (446)
T ss_pred c-CCCcEEEEccCCccc-CCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 4 343 344 334544 479999999984 69999999999865 556665 57899999999999999667899999
Q ss_pred eeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH
Q 018731 253 SIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE 302 (351)
Q Consensus 253 ~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~ 302 (351)
++|+|+ |||.+++.++++++.+++++.++++.|. +| |+.+.. ...++++
T Consensus 305 d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~-~~~v~~~ 356 (446)
T PRK14337 305 DLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEML-PGKVPEE 356 (446)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCccccC-CCCCCHH
Confidence 999999 9999999999999999999999986565 56 887632 2345543
No 57
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=3.1e-22 Score=197.20 Aligned_cols=196 Identities=16% Similarity=0.198 Sum_probs=151.5
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C-CcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D-GGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~-~~~~~~~~li~~ik~~ 179 (351)
..+++.+++|||++|+||.++..++..+ +++++++++++.+.+.|+++|+|+|.+-+.+. + .+...+.++++.+.+.
T Consensus 140 ~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~ 219 (434)
T PRK14330 140 HHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKI 219 (434)
T ss_pred cEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhc
Confidence 6788899999999999999988665433 55689999999999999999999987643321 0 0124577888777654
Q ss_pred CCCc-EEEE--eecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPDI-MVEC--LTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~i-~i~~--~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+++ .+.. ..|.. ++++.++.|+++| +.++.+++||+++ +.+.++ ++++.+++.++++.+++..+|+.+.++
T Consensus 220 -~~~~~~~~~~~~p~~-~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~i~i~~d 296 (434)
T PRK14330 220 -EGIERIWFLTSYPTD-FSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMN-RRYTREEYLELIEKIRSKVPDASISSD 296 (434)
T ss_pred -CCceEEEEecCChhh-cCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 333 2222 22333 4889999999998 7899999999865 555665 578999999999999996679999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP 301 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~ 301 (351)
+|+|+ |||.+++.++++++.+++++.++++.|. +| |+++....+.++.
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~ 347 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPY 347 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCChhhhhCccCCCH
Confidence 99999 9999999999999999999999987554 45 8886322334544
No 58
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=1.7e-22 Score=199.43 Aligned_cols=217 Identities=16% Similarity=0.260 Sum_probs=165.2
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHHHHHHh------CCCcEEEEeccCCCCCCCCcHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIAS------WGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~~~~~~------~G~~~I~ltgg~~~~l~~~~~~~~~~li~ 174 (351)
.++.+.-++|+.+|.||.+...... ...+.+.+.++++...+ ..++.|+|.||+|+.++ .+.+.++++
T Consensus 62 ~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~---~~~l~~ll~ 138 (449)
T PRK09058 62 RLLYIHIPFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALS---AEDLARLIT 138 (449)
T ss_pred eEEEEEeCCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCC---HHHHHHHHH
Confidence 4556668999999999998753211 12345666666665443 24778999999998776 588999999
Q ss_pred HHHHhCC-----CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCC-
Q 018731 175 AMKKQKP-----DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKG- 247 (351)
Q Consensus 175 ~ik~~~p-----~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~G- 247 (351)
.+++.+| ++++++ .|+. .+++.++.|+++|+++|++|+||+++ ..+.++ +.++.++++++++.+++ .|
T Consensus 139 ~i~~~~~l~~~~eitiE~-~p~~-~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lg-R~~~~~~~~~~i~~l~~--~g~ 213 (449)
T PRK09058 139 ALREYLPLAPDCEITLEG-RING-FDDEKADAALDAGANRFSIGVQSFNTQVRRRAG-RKDDREEVLARLEELVA--RDR 213 (449)
T ss_pred HHHHhCCCCCCCEEEEEe-CcCc-CCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHh--CCC
Confidence 9988754 244554 3443 48999999999999999999999876 455554 58999999999999999 89
Q ss_pred CeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc-C---CC-CHHH----HHHHHHHHHhcC
Q 018731 248 LITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK-E---YV-TPEK----FDFWKAYGESIG 315 (351)
Q Consensus 248 i~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~-~---~v-~~~e----~~~~~~~~~~~G 315 (351)
..+++++|+|+ |||.+++.++++++.+++++++.++.+. .| |+++.... . .. +.++ +....+.+.+.|
T Consensus 214 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~G 293 (449)
T PRK09058 214 AAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAG 293 (449)
T ss_pred CcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 56999999999 9999999999999999999999997543 45 77753221 1 11 3332 334556677789
Q ss_pred cceeccCcccccc
Q 018731 316 FRYVASGPLVRSS 328 (351)
Q Consensus 316 ~~~~~~~~~~r~~ 328 (351)
|.+++..+|++..
T Consensus 294 y~~yeis~far~~ 306 (449)
T PRK09058 294 WRQLSNSHWARTT 306 (449)
T ss_pred CeEEeeeeeecCC
Confidence 9999999998865
No 59
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.90 E-value=2.8e-22 Score=197.62 Aligned_cols=196 Identities=16% Similarity=0.244 Sum_probs=154.1
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC----CcHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD----GGSGHFARTVKAMK 177 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~----~~~~~~~~li~~ik 177 (351)
..+++.+++||+++|+||.++..++..+ ++++++.++++.+.+.|+++|+|+|.+...+.. .+...+.++++.+.
T Consensus 145 ~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~ 224 (438)
T TIGR01574 145 YKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELS 224 (438)
T ss_pred eeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHH
Confidence 6788999999999999999988665433 566899999999999999999999876543311 11236888888887
Q ss_pred HhCCCc-EEEE--eecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 018731 178 KQKPDI-MVEC--LTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 178 ~~~p~i-~i~~--~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (351)
+. +++ ++.. ..|.. ++++.++.|+++| +..+.+++||+++ +.+.++ ++++.++++++++.+++..+|+.+.
T Consensus 225 ~~-~~~~~ir~~~~~p~~-l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~ir~~~~~i~i~ 301 (438)
T TIGR01574 225 TI-DGIERIRFTSSHPLD-FDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMK-RGYTREWYLNLVRKLRAACPNVSIS 301 (438)
T ss_pred hc-CCceEEEEecCCccc-CCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeEe
Confidence 63 343 3332 23433 5899999999999 9999999999865 555565 5789999999999999866699999
Q ss_pred EeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH
Q 018731 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE 302 (351)
Q Consensus 252 ~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~ 302 (351)
+++|+|+ |||++++.++++++++++++.++++.|. +| |+++.. ...++++
T Consensus 302 ~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~-~~~v~~~ 354 (438)
T TIGR01574 302 TDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAADM-PDQIPEE 354 (438)
T ss_pred eCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCchhhC-CCCCCHH
Confidence 9999999 9999999999999999999999987665 55 888732 2334443
No 60
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=5.9e-22 Score=196.14 Aligned_cols=188 Identities=15% Similarity=0.230 Sum_probs=150.7
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC--CcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD--GGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~--~~~~~~~~li~~ik~~ 179 (351)
...++.+++|||++|+||.++..++.. .++++++.++++.+.+.|+++|+|+|.+...+.. .+...+.++++.+.+.
T Consensus 155 ~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~ 234 (459)
T PRK14338 155 VTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEI 234 (459)
T ss_pred eEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhc
Confidence 678889999999999999998866543 3567999999999999999999999865322210 0125688999999875
Q ss_pred CCCc-EEE--EeecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPDI-MVE--CLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~i-~i~--~~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+++ ++. ...|.. ++++.++.|+++ |+..+.+++||+++ ..+.++ ++++.++++++++.+++..+|+.+.++
T Consensus 235 -~gi~~ir~~~~~p~~-i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~pgi~i~~d 311 (459)
T PRK14338 235 -PGLERLRFLTSHPAW-MTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMR-RGYTVARYRELIARIREAIPDVSLTTD 311 (459)
T ss_pred -CCcceEEEEecChhh-cCHHHHHHHhcccccccceecCcccCCHHHHHhcc-CCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 343 343 333443 589999999995 58999999999865 566665 578999999999999996669999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcc
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHL 293 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~ 293 (351)
+|+|+ |||.+++.++++++.+++++.++++.|. .| |+++.
T Consensus 312 ~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~ 354 (459)
T PRK14338 312 IIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAE 354 (459)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhh
Confidence 99999 9999999999999999999999886665 45 88763
No 61
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=3.9e-22 Score=196.58 Aligned_cols=199 Identities=16% Similarity=0.248 Sum_probs=151.3
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC-CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C-CcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D-GGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~-~~~~~~~~li~~ik~~ 179 (351)
..+++.+++||+++|+||.++..++. ...+++++.++++.+.+.|+++|+|+|.+...+. + .....+.++++.+.+.
T Consensus 138 ~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~ 217 (440)
T PRK14334 138 LSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGAS 217 (440)
T ss_pred eEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhc
Confidence 67889999999999999999886543 3456799999999999999999999985532121 0 0113577788777654
Q ss_pred C-CCcEEEEeecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee
Q 018731 180 K-PDIMVECLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM 255 (351)
Q Consensus 180 ~-p~i~i~~~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I 255 (351)
. +.+++....|.. ++++.++.|+++ |+.++.+++||+++ ..+.++ ++++.++++++++.+++..+++.+++++|
T Consensus 218 ~i~~ir~~~~~p~~-i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~-R~~~~~~~~~~v~~lr~~~~~i~i~~d~I 295 (440)
T PRK14334 218 GIPRVKFTTSHPMN-FTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMA-REYRREKYLERIAEIREALPDVVLSTDII 295 (440)
T ss_pred CCcEEEEccCCccc-CCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhC-CCCCHHHHHHHHHHHHHhCCCcEEEEeEE
Confidence 2 123443333433 489999999995 59999999999866 555554 57899999999999999555667899999
Q ss_pred eeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHHHH
Q 018731 256 LGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPEKF 304 (351)
Q Consensus 256 vGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~e~ 304 (351)
+|+ |||.+++.++++++.+++++.++++.|. +| |+.+.. ...+++++.
T Consensus 296 vG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~~~~~-~~~v~~~~~ 346 (440)
T PRK14334 296 VGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKH-FQDLPREVK 346 (440)
T ss_pred EECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCChhHhc-cCCCCHHHH
Confidence 999 9999999999999999999999987665 45 877632 234555443
No 62
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.89 E-value=5.3e-22 Score=195.43 Aligned_cols=187 Identities=19% Similarity=0.318 Sum_probs=148.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C-CcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D-GGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~-~~~~~~~~li~~ik~~ 179 (351)
..+++.+++|||++|+||.++..++..+ .++++++++++.+.+.|+++|+|+|.+...+. + .+...+.++++.+++.
T Consensus 139 ~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 218 (429)
T TIGR00089 139 TRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKI 218 (429)
T ss_pred eEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcC
Confidence 5788889999999999999988665433 55789999999999999999999987643221 1 0113588899888774
Q ss_pred CCCc-EEEE--eecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPDI-MVEC--LTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~i-~i~~--~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+++ ++.. ..+.. ++++.++.|+++| +.++.+++||+++ +.+.++ ++++.+++.++++.+++..+++.+.++
T Consensus 219 -~g~~~i~~~~~~p~~-i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~-R~~~~~~~~~~i~~lr~~~~~i~i~~~ 295 (429)
T TIGR00089 219 -DGIERIRFGSSHPDD-VTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMN-RKYTREEYLDIVEKIRAKIPDAAITTD 295 (429)
T ss_pred -CCCCEEEECCCChhh-cCHHHHHHHHhCCCccCceeeccccCChHHHHhCC-CCCCHHHHHHHHHHHHHHCCCCEEEee
Confidence 332 3433 23433 4899999999995 9999999999876 555565 578999999999999994445999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCc
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~ 292 (351)
+|+|+ |||.+++.++++++.+++++.++++.|. .| |+++
T Consensus 296 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pgT~~~ 337 (429)
T TIGR00089 296 IIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAA 337 (429)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCCCCchh
Confidence 99999 9999999999999999999999996554 44 8876
No 63
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=5.1e-22 Score=191.62 Aligned_cols=220 Identities=13% Similarity=0.195 Sum_probs=162.4
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCC-C--CCCchhHHHH-HHHHHh----CCCcEEEEeccCCCCCCCCcHHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNP-A--PPDPMEPENT-AKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVKA 175 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~-~--~~~~eei~~~-~~~~~~----~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ 175 (351)
.++.+.-++|..+|.||.+...... . ..+.+.+.++ ++.... ..++.|+|+||+|..++ .+.+.++++.
T Consensus 7 ~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~---~~~l~~ll~~ 83 (370)
T PRK06294 7 LALYIHIPFCTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVP---PALIQDILKT 83 (370)
T ss_pred eEEEEEeCCccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCC---HHHHHHHHHH
Confidence 4566678999999999998764211 1 1122333332 322221 34678999999987776 5788899999
Q ss_pred HHHh-CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEE
Q 018731 176 MKKQ-KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKS 252 (351)
Q Consensus 176 ik~~-~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~ 252 (351)
|++. ..++++++ .|+. ++++.++.|+++|++++++|+||+++ ..+.+. +.++.++.+++++.+++ .|+. ++.
T Consensus 84 i~~~~~~eit~E~-~P~~-~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~-R~~~~~~~~~ai~~~~~--~g~~~v~~ 158 (370)
T PRK06294 84 LEAPHATEITLEA-NPEN-LSESYIRALALTGINRISIGVQTFDDPLLKLLG-RTHSSSKAIDAVQECSE--HGFSNLSI 158 (370)
T ss_pred HHhCCCCeEEEEe-CCCC-CCHHHHHHHHHCCCCEEEEccccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCeEEE
Confidence 8764 22456655 3444 48999999999999999999999876 455554 58999999999999999 9995 999
Q ss_pred eeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc----CCCCHH----HHHHHHHHHHhcCcceecc
Q 018731 253 SIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK----EYVTPE----KFDFWKAYGESIGFRYVAS 321 (351)
Q Consensus 253 ~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~----~~v~~~----e~~~~~~~~~~~G~~~~~~ 321 (351)
++|+|+ |||.+++.++++.+.++++++++++.+. .| |+++.... ...+++ .+....+.+...||.+++.
T Consensus 159 Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei 238 (370)
T PRK06294 159 DLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTRYEL 238 (370)
T ss_pred EeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCeeee
Confidence 999999 9999999999999999999999997443 44 77753211 112332 3334556777889999999
Q ss_pred Cccccccccc
Q 018731 322 GPLVRSSYRA 331 (351)
Q Consensus 322 ~~~~r~~~~a 331 (351)
++|++.++.+
T Consensus 239 s~fa~~~~~~ 248 (370)
T PRK06294 239 ASYAKPQAQS 248 (370)
T ss_pred eeeeCCCchh
Confidence 9999876553
No 64
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=1.3e-21 Score=190.37 Aligned_cols=219 Identities=11% Similarity=0.113 Sum_probs=165.0
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCC----C--CCCchhHHHHHHHHHh----CCCcEEEEeccCCCCCCCCcHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNP----A--PPDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTV 173 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~----~--~~~~eei~~~~~~~~~----~G~~~I~ltgg~~~~l~~~~~~~~~~li 173 (351)
.++.+..++|..+|.||.++..... . ..+.+.+.++++.... ..++.|+|.||+|..++ .+.+.+++
T Consensus 20 ~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~---~~~L~~ll 96 (394)
T PRK08898 20 LSLYVHFPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLS---AAGLDRLL 96 (394)
T ss_pred eEEEEEeCCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCC---HHHHHHHH
Confidence 3566678999999999999764211 1 1244566666654322 24779999999998776 58899999
Q ss_pred HHHHHhCCC-----cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCC
Q 018731 174 KAMKKQKPD-----IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKG 247 (351)
Q Consensus 174 ~~ik~~~p~-----i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~G 247 (351)
+.|++.+|- +++++ .|+. ++.+.++.|+++|+++|++|+||+++ ..+.+. +.++.++..++++.+++ .+
T Consensus 97 ~~i~~~~~~~~~~eit~E~-~p~~-~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~-R~~~~~~~~~~i~~~~~--~~ 171 (394)
T PRK08898 97 SDVRALLPLDPDAEITLEA-NPGT-FEAEKFAQFRASGVNRLSIGIQSFNDAHLKALG-RIHDGAEARAAIEIAAK--HF 171 (394)
T ss_pred HHHHHhCCCCCCCeEEEEE-CCCC-CCHHHHHHHHHcCCCeEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHH--hC
Confidence 999987642 44444 3444 48899999999999999999999876 555554 57899999999999998 67
Q ss_pred CeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH----HHHHHHHHHHhcCcceec
Q 018731 248 LITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE----KFDFWKAYGESIGFRYVA 320 (351)
Q Consensus 248 i~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~----e~~~~~~~~~~~G~~~~~ 320 (351)
..++.++|+|+ |+|.+++.++++.+.++++++++++.+. .| |+++.......+.+ .+....+.+...||.+++
T Consensus 172 ~~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye 251 (394)
T PRK08898 172 DNFNLDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAHYE 251 (394)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCchhc
Confidence 77999999999 9999999999999999999999997554 45 87763222222222 233345667778999999
Q ss_pred cCcccccccc
Q 018731 321 SGPLVRSSYR 330 (351)
Q Consensus 321 ~~~~~r~~~~ 330 (351)
..+|++.+++
T Consensus 252 ~~~fa~~~~~ 261 (394)
T PRK08898 252 VSAYAKPGRQ 261 (394)
T ss_pred cccccCCCcc
Confidence 9888876543
No 65
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.89 E-value=1.8e-21 Score=190.81 Aligned_cols=189 Identities=16% Similarity=0.275 Sum_probs=146.9
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-CCcHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-DGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~~~~~~~~~li~~ik~~~ 180 (351)
..+++.+++|||++|+||.++..++..+ +++++++++++.+.+.|+++|+|+|.+...+. +.+ .++.++++.+.+..
T Consensus 133 ~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~-~~l~~Ll~~l~~i~ 211 (420)
T TIGR01578 133 LIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIG-SRLPELLRLITEIP 211 (420)
T ss_pred cEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCC-cCHHHHHHHHHhCC
Confidence 6788999999999999999998765543 45689999999999999999999987754331 111 24777777776542
Q ss_pred CC--cEEEEeecCC--CCCHHHHHHHHHcC-CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee
Q 018731 181 PD--IMVECLTSDF--RGDLRAVETLVHSG-LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (351)
Q Consensus 181 p~--i~i~~~~~~~--~~~~e~l~~L~~aG-~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (351)
.. +++....|.. ..+++.++.++..| +..+.+++||.++ ..+.++ ++++.+++.++++.+++..+|+.+.+++
T Consensus 212 ~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~-R~~~~~~~~~~i~~i~~~~~~i~i~~~~ 290 (420)
T TIGR01578 212 GEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMK-REYTVSDFEDIVDKFRERFPDLTLSTDI 290 (420)
T ss_pred CCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCEEEeeE
Confidence 12 3333333432 24678888887655 6889999999866 555565 5789999999999999855699999999
Q ss_pred eeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcc
Q 018731 255 MLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHL 293 (351)
Q Consensus 255 IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~ 293 (351)
|+|+ |||.+++.++++++++++++.++++.|. .| |+++.
T Consensus 291 IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~~~~ 332 (420)
T TIGR01578 291 IVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAK 332 (420)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCcccC
Confidence 9999 9999999999999999999999997564 45 88874
No 66
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=9.5e-22 Score=190.60 Aligned_cols=220 Identities=10% Similarity=0.122 Sum_probs=165.0
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC---CCCchhHHHHHHHHHh----CCCcEEEEeccCCCCCCCCcHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA---PPDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVKA 175 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~---~~~~eei~~~~~~~~~----~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ 175 (351)
..++.+.-++|..+|.||.+.+..... ..+.+.+.++++.... ..++.|+|+||+|..++ .+.+.++++.
T Consensus 11 ~~~lYiHiPFC~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~l~~ll~~ 87 (390)
T PRK06582 11 DLSIYIHWPFCLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMN---PVIVEGIINK 87 (390)
T ss_pred CeEEEEEeCCCcCcCCCCCCeeccCCCCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCC---HHHHHHHHHH
Confidence 346667799999999999997642111 1233334444443322 34789999999987776 4788889999
Q ss_pred HHHhC--C---CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe
Q 018731 176 MKKQK--P---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI 249 (351)
Q Consensus 176 ik~~~--p---~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~ 249 (351)
+++.+ + ++++++ .|+. ++++.++.|+++|+++|++|+||+++ ..+.+. +.++.++.+++++.+++ .+..
T Consensus 88 i~~~~~~~~~~eitiE~-nP~~-~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lg-R~h~~~~~~~ai~~~~~--~~~~ 162 (390)
T PRK06582 88 ISNLAIIDNQTEITLET-NPTS-FETEKFKAFKLAGINRVSIGVQSLKEDDLKKLG-RTHDCMQAIKTIEAANT--IFPR 162 (390)
T ss_pred HHHhCCCCCCCEEEEEe-CCCc-CCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcC-CCCCHHHHHHHHHHHHH--hCCc
Confidence 98753 2 355655 3443 58999999999999999999999876 445554 58999999999999998 7778
Q ss_pred EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc----CCCCHH----HHHHHHHHHHhcCcce
Q 018731 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK----EYVTPE----KFDFWKAYGESIGFRY 318 (351)
Q Consensus 250 v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~----~~v~~~----e~~~~~~~~~~~G~~~ 318 (351)
++.++|+|+ |+|.+++.++++.+.++++++++++.+. .| |+++.... ...+.+ .+....+.++..||.+
T Consensus 163 v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 242 (390)
T PRK06582 163 VSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR 242 (390)
T ss_pred EEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce
Confidence 999999999 9999999999999999999999997554 55 88763221 122322 3334566778889999
Q ss_pred eccCcccccccc
Q 018731 319 VASGPLVRSSYR 330 (351)
Q Consensus 319 ~~~~~~~r~~~~ 330 (351)
++..+|++.++.
T Consensus 243 yeis~fa~~g~~ 254 (390)
T PRK06582 243 YEISNYAKIGQE 254 (390)
T ss_pred eeceeeeCCChh
Confidence 999999887654
No 67
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=2e-21 Score=188.28 Aligned_cols=219 Identities=11% Similarity=0.101 Sum_probs=165.3
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCCCC---CCchhHHHHHHHHHh----CCCcEEEEeccCCCCCCCCcHHHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNPAP---PDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~~~---~~~eei~~~~~~~~~----~G~~~I~ltgg~~~~l~~~~~~~~~~li~~i 176 (351)
.++.+..++|..+|.||.+.+...... .+.+.+.++++.... ..++.|+|.||+|..++ .+.+.++++.|
T Consensus 5 ~~lYiHIPFC~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~L~~ll~~i 81 (380)
T PRK09057 5 FGLYVHWPFCLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQ---PETVAALLDAI 81 (380)
T ss_pred eEEEEEeCCcCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCC---HHHHHHHHHHH
Confidence 356667899999999999986432111 244555556554332 35789999999998776 57899999999
Q ss_pred HHhCC-----CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 018731 177 KKQKP-----DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (351)
Q Consensus 177 k~~~p-----~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (351)
++.++ ++++++ .|+. ++.+.++.|+++|+++|++|+||+++ ..+.+. +.++.++..++++.+++ .+..+
T Consensus 82 ~~~f~~~~~~eit~E~-~P~~-i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~-R~~~~~~~~~ai~~~~~--~~~~v 156 (380)
T PRK09057 82 ARLWPVADDIEITLEA-NPTS-VEAGRFRGYRAAGVNRVSLGVQALNDADLRFLG-RLHSVAEALAAIDLARE--IFPRV 156 (380)
T ss_pred HHhCCCCCCccEEEEE-CcCc-CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--hCccE
Confidence 98753 245655 3444 48899999999999999999999876 455554 58999999999999999 78889
Q ss_pred EEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc----CCCCHH----HHHHHHHHHHhcCccee
Q 018731 251 KSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK----EYVTPE----KFDFWKAYGESIGFRYV 319 (351)
Q Consensus 251 ~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~----~~v~~~----e~~~~~~~~~~~G~~~~ 319 (351)
+.++|+|+ |+|.+++.++++.+.+++++++.++.+. .| |+++.... ...+.+ .+....+.++..||.++
T Consensus 157 ~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~y 236 (380)
T PRK09057 157 SFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPAY 236 (380)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCchh
Confidence 99999999 9999999999999999999999997554 45 77753211 123333 34445667778899888
Q ss_pred ccCcccccccc
Q 018731 320 ASGPLVRSSYR 330 (351)
Q Consensus 320 ~~~~~~r~~~~ 330 (351)
+.+++++.++.
T Consensus 237 e~s~~a~~g~~ 247 (380)
T PRK09057 237 EISNHARPGAE 247 (380)
T ss_pred hhHHHcCCCch
Confidence 77777765543
No 68
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=1.1e-21 Score=193.99 Aligned_cols=187 Identities=14% Similarity=0.235 Sum_probs=148.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCC----CCC-----cHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDI----PDG-----GSGHFART 172 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l----~~~-----~~~~~~~l 172 (351)
..+++.+++||+++|+||.++..++.. ..++++++++++.+.+.|+++|+|+|.+-..+ ... ....|.++
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~L 227 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDL 227 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHH
Confidence 467889999999999999999866543 35678999999999889999999998653322 100 01368888
Q ss_pred HHHHHHhCCCc-EEEE--eecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCC
Q 018731 173 VKAMKKQKPDI-MVEC--LTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKK 246 (351)
Q Consensus 173 i~~ik~~~p~i-~i~~--~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~ 246 (351)
++.+.+. +++ ++.. ..|+. ++++.++.++++ |+..+.+++||+++ +.+.++ ++++.++++++++.+++..+
T Consensus 228 l~~i~~~-~~~~rir~~~~~p~~-~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~p 304 (448)
T PRK14333 228 LYYIHDV-EGIERIRFATSHPRY-FTERLIKACAELPKVCEHFHIPFQSGDNEILKAMA-RGYTHEKYRRIIDKIREYMP 304 (448)
T ss_pred HHHHHhc-CCCeEEEECCCChhh-hhHHHHHHHhcCCcccccccCCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCC
Confidence 8888774 443 3433 23433 478999999986 58999999999866 555565 57899999999999999666
Q ss_pred CCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCc
Q 018731 247 GLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 247 Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~ 292 (351)
|+.+.+++|+|+ |||.+++.++++++++++++.++++.|. +| ||++
T Consensus 305 ~i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~ 353 (448)
T PRK14333 305 DASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAA 353 (448)
T ss_pred CcEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchh
Confidence 999999999999 9999999999999999999999987665 55 8876
No 69
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.88 E-value=2.1e-21 Score=185.34 Aligned_cols=203 Identities=15% Similarity=0.202 Sum_probs=146.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC-CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC---------CcHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD---------GGSGHFART 172 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~---------~~~~~~~~l 172 (351)
...++++|++|+.+|.||+++..++. ..++++++.+.++++.+.|++++.|+||+++++.- .+...+.+.
T Consensus 12 ~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~ 91 (336)
T PRK06245 12 RNVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEY 91 (336)
T ss_pred cceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHH
Confidence 34667899999999999999876543 34778999999999999999999999998754431 011334455
Q ss_pred HHHHHHhCC--CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCC
Q 018731 173 VKAMKKQKP--DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKG 247 (351)
Q Consensus 173 i~~ik~~~p--~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~G 247 (351)
++.+.+... ++.. ..++ ..++++.++.|+++|+. +.+++||.++ +.+.++ .+++++++++++++.+++ .|
T Consensus 92 i~~i~~~~~~~g~~~-~~~~-~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~--~G 166 (336)
T PRK06245 92 LYDLCELALEEGLLP-HTNA-GILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGK--LK 166 (336)
T ss_pred HHHHHHHHhhcCCCc-cccC-CCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHH--cC
Confidence 544443211 1211 1223 34689999999999865 5677898765 433221 146689999999999999 99
Q ss_pred CeEEEeeeeeCCCCHHHHHHHHHHHHhCC-----CCEEeeecccCC---CCCcccccCCCCHHHHHHHHHHHHh
Q 018731 248 LITKSSIMLGLGESDDDLKEAMADLRSID-----VDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 248 i~v~~~~IvGlgEt~e~~~~~l~~l~~lg-----~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~~~~~~~~~ 313 (351)
+.+++++|+|+|||.+++.+++.++++++ ++.+.++.| .| ||+. ....++++++.++.+.++.
T Consensus 167 i~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f-~P~~~T~~~--~~~~~s~~e~l~~ia~~Rl 237 (336)
T PRK06245 167 IPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNF-SPKPGIPME--NHPEPSLEEMLRVVALARL 237 (336)
T ss_pred CceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCC-cCCCCCCcc--cCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999886 456666444 46 5653 2345677787776666554
No 70
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.88 E-value=3.2e-21 Score=189.62 Aligned_cols=215 Identities=11% Similarity=0.145 Sum_probs=158.4
Q ss_pred EEEeeccCCCCCCcCcccCCCCCCC-C---CCchhHHHHHHHHHh----CCCcEEEEeccCCCCCCCCcHHHHHHHHHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRNPA-P---PDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~~~-~---~~~eei~~~~~~~~~----~G~~~I~ltgg~~~~l~~~~~~~~~~li~~i 176 (351)
++.+..+.|+.+|.||.+....+.. . .+.+.+.++++.+.+ ..+..|+|.||+|..++ .+++.++++.+
T Consensus 41 ~lYvHIPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~Ll~~i 117 (430)
T PRK08208 41 SLYIHIPFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLN---AAELEKLFDSV 117 (430)
T ss_pred EEEEEeCCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCC---HHHHHHHHHHH
Confidence 4444459999999999987643211 1 233455555554432 23668999999987665 47888888888
Q ss_pred HHhCC----C--cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe
Q 018731 177 KKQKP----D--IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI 249 (351)
Q Consensus 177 k~~~p----~--i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~ 249 (351)
++.++ + +++++ .|+. ++++.++.|+++|+++|++|+||+++ ..+.+. ++++.++.+++++.+++ .|+.
T Consensus 118 ~~~~~~~~~~~eitiE~-~P~~-lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~~~~~~~~ai~~l~~--~g~~ 192 (430)
T PRK08208 118 ERVLGVDLGNIPKSVET-SPAT-TTAEKLALLAARGVNRLSIGVQSFHDSELHALH-RPQKRADVHQALEWIRA--AGFP 192 (430)
T ss_pred HHhCCCCCCCceEEEEe-CcCc-CCHHHHHHHHHcCCCEEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCC
Confidence 87642 2 33444 3444 49999999999999999999999855 554443 57899999999999999 9997
Q ss_pred -EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccC--CCCHHHHHHHHHHHHhcCcceeccCc
Q 018731 250 -TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKE--YVTPEKFDFWKAYGESIGFRYVASGP 323 (351)
Q Consensus 250 -v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~--~v~~~e~~~~~~~~~~~G~~~~~~~~ 323 (351)
++.++|+|+ |+|.+++.++++++.+++++++.++.+. .| |+++..... ....+.+....+.+...||.+++.++
T Consensus 193 ~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~yei~~ 272 (430)
T PRK08208 193 ILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQTSMRM 272 (430)
T ss_pred eEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeEEeecc
Confidence 789999999 9999999999999999999999997543 34 877632211 11122344456677788999999988
Q ss_pred cccc
Q 018731 324 LVRS 327 (351)
Q Consensus 324 ~~r~ 327 (351)
|++.
T Consensus 273 far~ 276 (430)
T PRK08208 273 FRRN 276 (430)
T ss_pred eecC
Confidence 8873
No 71
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.88 E-value=1e-20 Score=187.44 Aligned_cols=220 Identities=14% Similarity=0.256 Sum_probs=162.2
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCC-CC---CCchhHHHHHHHHHh-----CCCcEEEEeccCCCCCCCCcHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNP-AP---PDPMEPENTAKAIAS-----WGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~-~~---~~~eei~~~~~~~~~-----~G~~~I~ltgg~~~~l~~~~~~~~~~li~ 174 (351)
.++.+..++|+.+|.||.+....+. .+ .+.+.+.++++.+.. .+++.|+|+||+|..++ .+++.++++
T Consensus 50 ~~lYiHiPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~---~~~l~~ll~ 126 (455)
T TIGR00538 50 LSLYVHIPFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLS---PEQISRLMK 126 (455)
T ss_pred eEEEEEeCCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCC---HHHHHHHHH
Confidence 4566678999999999999864321 11 133455555554422 37889999999986555 589999999
Q ss_pred HHHHhCC---CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-
Q 018731 175 AMKKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI- 249 (351)
Q Consensus 175 ~ik~~~p---~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~- 249 (351)
.+++.++ +..+.+.++...++++.++.|+++|+++|++|+||+++ ..+.++ +.++.++.+++++.+++ .|+.
T Consensus 127 ~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~-r~~~~~~~~~ai~~l~~--~G~~~ 203 (455)
T TIGR00538 127 LIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVN-RIQPEEMIFELMNHARE--AGFTS 203 (455)
T ss_pred HHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh--cCCCc
Confidence 9998643 33344333323358999999999999999999999876 566665 56899999999999999 9996
Q ss_pred EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CCC--CCcccc--cCCCCHHHHH----HHHHHHHhcCccee
Q 018731 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QPT--PLHLTV--KEYVTPEKFD----FWKAYGESIGFRYV 319 (351)
Q Consensus 250 v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~PT--p~~~~~--~~~v~~~e~~----~~~~~~~~~G~~~~ 319 (351)
++.++|+|+ |+|.+++.++++++.+++++++.++.+. .|. +..... ....++++.. .+.+.+...||.++
T Consensus 204 v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~~~ 283 (455)
T TIGR00538 204 INIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQFI 283 (455)
T ss_pred EEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 899999999 9999999999999999999999996442 331 111111 1123444433 34556677899999
Q ss_pred ccCccccccc
Q 018731 320 ASGPLVRSSY 329 (351)
Q Consensus 320 ~~~~~~r~~~ 329 (351)
+.++|++..+
T Consensus 284 ~~~~fa~~~~ 293 (455)
T TIGR00538 284 GMDHFAKPDD 293 (455)
T ss_pred eccceeCCCh
Confidence 9999988643
No 72
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.87 E-value=1.3e-20 Score=186.48 Aligned_cols=218 Identities=13% Similarity=0.218 Sum_probs=160.7
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCC-CC---CCchhHHHHHHHHHh-----CCCcEEEEeccCCCCCCCCcHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNP-AP---PDPMEPENTAKAIAS-----WGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~-~~---~~~eei~~~~~~~~~-----~G~~~I~ltgg~~~~l~~~~~~~~~~li~ 174 (351)
.++...-++|+.+|.||.+...... .. .+.+.+.++++.+.+ .++..|+|+||+|..++ .+++.++++
T Consensus 50 ~~LYvHIPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~---~~~l~~ll~ 126 (453)
T PRK09249 50 LSLYVHIPFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLS---PEQLRRLMA 126 (453)
T ss_pred eEEEEEeCCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCC---HHHHHHHHH
Confidence 3444557999999999998764321 11 233445555543332 35789999999987665 478999999
Q ss_pred HHHHhCC---CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC-e
Q 018731 175 AMKKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL-I 249 (351)
Q Consensus 175 ~ik~~~p---~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi-~ 249 (351)
.+++.++ +..+.+.++...++++.++.|+++|+++|++|+||+++ ..+.++ +.++.++.+++++.+++ .|+ .
T Consensus 127 ~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~l~~--~G~~~ 203 (453)
T PRK09249 127 LLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVN-RIQPFEFTFALVEAARE--LGFTS 203 (453)
T ss_pred HHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCCc
Confidence 9988742 33344333333359999999999999999999999876 556665 57899999999999999 999 6
Q ss_pred EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCc----ccc--cCCCCHHHH----HHHHHHHHhcCcce
Q 018731 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH----LTV--KEYVTPEKF----DFWKAYGESIGFRY 318 (351)
Q Consensus 250 v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~----~~~--~~~v~~~e~----~~~~~~~~~~G~~~ 318 (351)
+++++|+|+ |+|.+++.++++++.+++++++.++.+ .++|.. ... ....+.++. ....+.+...||.+
T Consensus 204 v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 282 (453)
T PRK09249 204 INIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNY-AHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY 282 (453)
T ss_pred EEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccC-ccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 999999999 999999999999999999999999644 343432 111 122344443 33455677789999
Q ss_pred eccCcccccc
Q 018731 319 VASGPLVRSS 328 (351)
Q Consensus 319 ~~~~~~~r~~ 328 (351)
++.++|++..
T Consensus 283 ye~s~far~~ 292 (453)
T PRK09249 283 IGMDHFALPD 292 (453)
T ss_pred EeccceeCCC
Confidence 9999988764
No 73
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.87 E-value=1.6e-20 Score=185.88 Aligned_cols=219 Identities=11% Similarity=0.138 Sum_probs=160.9
Q ss_pred EEEEeeccCCCCCCcCcccCCCCC-CCC---CCchhHHHHHHHHHh-----CCCcEEEEeccCCCCCCCCcHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRN-PAP---PDPMEPENTAKAIAS-----WGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~-~~~---~~~eei~~~~~~~~~-----~G~~~I~ltgg~~~~l~~~~~~~~~~li~ 174 (351)
.++.+..+.|+.+|.||.+..... ... .+.+.+.++++.... .++..|+|+||+|..++ .+++.++++
T Consensus 51 ~~LYvHIPfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~---~~~l~~ll~ 127 (453)
T PRK13347 51 VSLYLHVPFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILN---PDQFERLMA 127 (453)
T ss_pred eEEEEEeCCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCC---HHHHHHHHH
Confidence 456666888999999999876421 111 123444555543332 35778999999987665 489999999
Q ss_pred HHHHhCC---CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-
Q 018731 175 AMKKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI- 249 (351)
Q Consensus 175 ~ik~~~p---~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~- 249 (351)
.+++.++ +..+.+.++...++++.++.|+++|++++++|+||+++ ..+.++ +.++.++..++++.+++ .|+.
T Consensus 128 ~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~-R~~~~~~~~~ai~~lr~--~G~~~ 204 (453)
T PRK13347 128 ALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAIN-RIQPEEMVARAVELLRA--AGFES 204 (453)
T ss_pred HHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh--cCCCc
Confidence 9998642 23333322322359999999999999999999999876 566665 57899999999999999 9996
Q ss_pred EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcc----c--ccCCCCHHH----HHHHHHHHHhcCcce
Q 018731 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHL----T--VKEYVTPEK----FDFWKAYGESIGFRY 318 (351)
Q Consensus 250 v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~----~--~~~~v~~~e----~~~~~~~~~~~G~~~ 318 (351)
++.++|+|+ |+|.+++.++++++.+++++++.++.+. .||... . .....++++ +....+.+...||.+
T Consensus 205 v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~-~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~ 283 (453)
T PRK13347 205 INFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYA-HVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP 283 (453)
T ss_pred EEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc-cccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE
Confidence 999999999 9999999999999999999999996443 333321 1 111223332 333556677889999
Q ss_pred eccCccccccc
Q 018731 319 VASGPLVRSSY 329 (351)
Q Consensus 319 ~~~~~~~r~~~ 329 (351)
++..+|++...
T Consensus 284 ~~~~~far~~~ 294 (453)
T PRK13347 284 IGLDHFALPDD 294 (453)
T ss_pred EeccceeCCCc
Confidence 99999988643
No 74
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=99.87 E-value=1.3e-21 Score=171.32 Aligned_cols=227 Identities=20% Similarity=0.325 Sum_probs=167.9
Q ss_pred HHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEee-ccCCCCCCcCcccCCCC--CC---CCCCchhHHHHHH
Q 018731 68 EVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSR--NP---APPDPMEPENTAK 141 (351)
Q Consensus 68 ~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~-s~gC~~~C~FC~~~~~~--~~---~~~~~eei~~~~~ 141 (351)
++.++++..-++.++..| .+.++|+.. ..+...+.+.+ +.||..+|.||.+.+.. +. .-+..+++++.++
T Consensus 52 eik~iYdtPLldL~f~aa---~~HRk~Hdp-~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak 127 (380)
T KOG2900|consen 52 EIKEIYDTPLLDLTFAAA---LQHRKWHDP-TKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAK 127 (380)
T ss_pred HHHHHhcchHHHHHHHHH---HHHhhhCCc-cceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHH
Confidence 456666654444444444 466678775 56788999987 99999999999987633 11 1145688999999
Q ss_pred HHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHH
Q 018731 142 AIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQ 221 (351)
Q Consensus 142 ~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~ 221 (351)
.+.+.|-.++++....++ +..+ ...|..+++.|++.. ++.+++....+.++.+.+..|++||+..++||++|..+.|
T Consensus 128 ~AK~~GSTRFCmGaAWRD-~~GR-k~~fk~IlE~ikevr-~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSREyY 204 (380)
T KOG2900|consen 128 EAKRNGSTRFCMGAAWRD-MKGR-KSAFKRILEMIKEVR-DMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYY 204 (380)
T ss_pred HHHhcCCceeecchhhhh-hccc-hhHHHHHHHHHHHHH-cCCceeeeeeccccHHHHHHHHhccceecccCccchhhhh
Confidence 999999999999877764 3321 234555555555532 4445544455567999999999999999999999998887
Q ss_pred -hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC--CCEEeeecccCC---CCCcccc
Q 018731 222 -RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID--VDILTLGQYLQP---TPLHLTV 295 (351)
Q Consensus 222 -~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg--~d~i~i~~~l~P---Tp~~~~~ 295 (351)
+.+. ..+|++++++|+.+++ +||+++++-|+|+||.++|..-.+..|..+. ++.+++ +.|.| ||+....
T Consensus 205 skvIt--TRtYDdRL~Ti~nvr~--aGikvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPi-N~LvaikGTP~~d~~ 279 (380)
T KOG2900|consen 205 SKVIT--TRTYDDRLQTIKNVRE--AGIKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPI-NRLVAIKGTPMADEK 279 (380)
T ss_pred cccce--ecchHHHHHHHHHHHH--hcceecccccccccccccceeeeeeeeccCCCCCccccc-ceEEecCCcccchhh
Confidence 6665 6799999999999999 9999999999999999999998888888876 457888 45534 8887444
Q ss_pred cCCCCHHHHHH
Q 018731 296 KEYVTPEKFDF 306 (351)
Q Consensus 296 ~~~v~~~e~~~ 306 (351)
...+.-.++.+
T Consensus 280 ~k~l~i~e~lR 290 (380)
T KOG2900|consen 280 SKKLQIDEILR 290 (380)
T ss_pred cccccHHHHHH
Confidence 45555555544
No 75
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.87 E-value=1e-20 Score=189.33 Aligned_cols=180 Identities=16% Similarity=0.256 Sum_probs=144.6
Q ss_pred EEEeeccCCCCCCcCcccCCCCC-CCCCCchhHHHHHHHHH-hCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-C
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRN-PAPPDPMEPENTAKAIA-SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-P 181 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~-~~~~~~eei~~~~~~~~-~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p 181 (351)
..+..|+|||++|+||+.+...+ ....+++.+.++++.+. +.|++.+.|.+.++. +. .+++.++++++.+.. .
T Consensus 195 ~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~-~~---~~~~~~l~~~l~~~~~l 270 (497)
T TIGR02026 195 AVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPT-IN---RKKFQEFCEEIIARNPI 270 (497)
T ss_pred eeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecccc-cC---HHHHHHHHHHHHhcCCC
Confidence 34678999999999999876432 23457788888888775 479999999876642 22 478999999998764 3
Q ss_pred CcEEEEeec--CCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 182 DIMVECLTS--DFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 182 ~i~i~~~~~--~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
++...+.+. +...+++.++.|+++|++++.+|+||+++ ..+.++ ++++.++..++++.+++ .||.+.+++|+|+
T Consensus 271 ~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~-K~~t~~~~~~ai~~l~~--~Gi~~~~~~I~G~ 347 (497)
T TIGR02026 271 SVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFR-KGTTTSTNKEAIRLLRQ--HNILSEAQFITGF 347 (497)
T ss_pred CeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhc-CCCCHHHHHHHHHHHHH--CCCcEEEEEEEEC
Confidence 455444432 23347899999999999999999999876 556665 57899999999999999 9999999999999
Q ss_pred -CCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCc
Q 018731 259 -GESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLH 292 (351)
Q Consensus 259 -gEt~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~ 292 (351)
|||.+++.++++++.+++++++.++ .+.| |+++
T Consensus 348 P~et~e~~~~t~~~~~~l~~~~~~~~-~~tP~PGT~l~ 384 (497)
T TIGR02026 348 ENETDETFEETYRQLLDWDPDQANWL-MYTPWPFTSLF 384 (497)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEE-EecCCCCcHHH
Confidence 9999999999999999999999885 5555 7664
No 76
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.86 E-value=1.3e-20 Score=187.71 Aligned_cols=177 Identities=12% Similarity=0.227 Sum_probs=141.8
Q ss_pred EEEeeccCCCCCCcCcccCCC---CCCCCCCchhHHHHHHHHHhC--CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 105 TIMLLGDTCTRGCRFCAVKTS---RNPAPPDPMEPENTAKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~---~~~~~~~~eei~~~~~~~~~~--G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
..+..++|||++|.||.++.. +.....+++.+.++++.+.+. |++.|+|.+.+. .. +.+++.++++.+++.
T Consensus 198 ~~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f--~~--~~~~~~~l~~~l~~~ 273 (472)
T TIGR03471 198 ISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFDDDTF--TD--DKPRAEEIARKLGPL 273 (472)
T ss_pred EEEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCC--CC--CHHHHHHHHHHHhhc
Confidence 456679999999999997642 222346778898888887764 789999965442 12 247888999999875
Q ss_pred CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
++.+.+.+... .+++.++.|+++|++++.+|+||+++ ..+.++ ++.+.++..++++.+++ .|+.+.+++|+|+
T Consensus 274 --~i~~~~~~~~~-~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~-K~~~~~~~~~~i~~~~~--~Gi~v~~~~IiGl 347 (472)
T TIGR03471 274 --GVTWSCNARAN-VDYETLKVMKENGLRLLLVGYESGDQQILKNIK-KGLTVEIARRFTRDCHK--LGIKVHGTFILGL 347 (472)
T ss_pred --CceEEEEecCC-CCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHH--CCCeEEEEEEEeC
Confidence 55555544332 58999999999999999999999876 455565 57899999999999999 9999999999999
Q ss_pred -CCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCc
Q 018731 259 -GESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLH 292 (351)
Q Consensus 259 -gEt~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~ 292 (351)
|||.+++.++++++.+++++.+.++ .+.| |+++
T Consensus 348 Pget~e~~~~ti~~~~~l~~~~~~~~-~l~P~PGT~l~ 384 (472)
T TIGR03471 348 PGETRETIRKTIDFAKELNPHTIQVS-LAAPYPGTELY 384 (472)
T ss_pred CCCCHHHHHHHHHHHHhcCCCceeee-ecccCCCcHHH
Confidence 9999999999999999999998885 5545 6654
No 77
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.86 E-value=3.3e-20 Score=163.96 Aligned_cols=182 Identities=17% Similarity=0.328 Sum_probs=144.6
Q ss_pred EEEeeccCCCCCCcCcccCCCCCC-CCCCchhHHHHHHHHHhCC-----CcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWG-----VDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei~~~~~~~~~~G-----~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
.++.+|++|+++|.||......+. ...+++++.+.++.+.+.| ++.+.++||++...+ .+++.++++.+++
T Consensus 3 ~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~~~~~~ 79 (216)
T smart00729 3 ALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLS---PEQLEELLEAIRE 79 (216)
T ss_pred cEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCC---HHHHHHHHHHHHH
Confidence 467889999999999999875422 2234577888887775544 467899999975433 2368888888888
Q ss_pred hCC---CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCC-CeEEEe
Q 018731 179 QKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKG-LITKSS 253 (351)
Q Consensus 179 ~~p---~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~G-i~v~~~ 253 (351)
..+ ...+...++....+++.++.|+++|++.+.+++|+.++ .++.++ ++.++++++++++.+++ .| +.+.+.
T Consensus 80 ~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~--~g~~~v~~~ 156 (216)
T smart00729 80 ILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN-RGHTVEDVLEAVEKLRE--AGPIKVSTD 156 (216)
T ss_pred hCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc-CCCCHHHHHHHHHHHHH--hCCcceEEe
Confidence 754 34566656656679999999999999999999999866 555565 57899999999999999 89 889999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCc
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~ 292 (351)
+++|+ +++.+++.++++++.+++++.+.++.+. .| |+++
T Consensus 157 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~ 198 (216)
T smart00729 157 LIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLA 198 (216)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHH
Confidence 99999 7999999999999999999998886554 34 6665
No 78
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.86 E-value=2.5e-20 Score=181.54 Aligned_cols=220 Identities=14% Similarity=0.242 Sum_probs=166.3
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC----CCCCchhHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCcHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP----APPDPMEPENTAKAIASW-----GVDYIVLTSVDRDDIPDGGSGHFARTV 173 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~----~~~~~eei~~~~~~~~~~-----G~~~I~ltgg~~~~l~~~~~~~~~~li 173 (351)
..+..+-.++|...|.||.+.+.... ...+.+.+.++++..... -++.|+|.||+|..|. .+.+..++
T Consensus 34 ~~slYiHiPFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~---~~~l~~ll 110 (416)
T COG0635 34 PLSLYIHIPFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLS---PEQLERLL 110 (416)
T ss_pred ceEEEEEcccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCC---HHHHHHHH
Confidence 35666679999999999999874211 112334444444443322 2678999999998776 57888888
Q ss_pred HHHHHhCC------CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCC
Q 018731 174 KAMKKQKP------DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKK 246 (351)
Q Consensus 174 ~~ik~~~p------~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~ 246 (351)
..|++.++ ++++++ .|+. .+.+.++.++++|++||++|++|+++ +.+.+. +.++.++..++++.+++ .
T Consensus 111 ~~l~~~~~~~~~~~EitiE~-nP~~-~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lg-R~h~~~~~~~a~~~~~~--~ 185 (416)
T COG0635 111 KALRELFNDLDPDAEITIEA-NPGT-VEAEKFKALKEAGVNRISLGVQSFNDEVLKALG-RIHDEEEAKEAVELARK--A 185 (416)
T ss_pred HHHHHhcccCCCCceEEEEe-CCCC-CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhc-CCCCHHHHHHHHHHHHH--c
Confidence 88887762 356666 3433 48999999999999999999999976 555554 58999999999999999 9
Q ss_pred CCe-EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc--C-CCCH----HHHHHHHHHHHhcC
Q 018731 247 GLI-TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK--E-YVTP----EKFDFWKAYGESIG 315 (351)
Q Consensus 247 Gi~-v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~--~-~v~~----~e~~~~~~~~~~~G 315 (351)
|+. ++.|+|+|+ ++|.+++.++++.+.++++|+++++++. .| |+.+.... . ..++ +.+....+.+++.|
T Consensus 186 g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~G 265 (416)
T COG0635 186 GFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAG 265 (416)
T ss_pred CCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCC
Confidence 996 999999999 9999999999999999999999998765 66 77653211 1 2222 23344566778899
Q ss_pred cceeccCcccccccc
Q 018731 316 FRYVASGPLVRSSYR 330 (351)
Q Consensus 316 ~~~~~~~~~~r~~~~ 330 (351)
|.+++..++++.++.
T Consensus 266 y~~yeisnfa~~~~e 280 (416)
T COG0635 266 YRQYEISNFAKPGGE 280 (416)
T ss_pred CcEEeechhcCcchH
Confidence 999999999885433
No 79
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.81 E-value=5.8e-18 Score=166.14 Aligned_cols=214 Identities=11% Similarity=0.160 Sum_probs=147.0
Q ss_pred eEEEEeeccCCCCCCcCcccCCCC-CC--CCCCchhHHHHHHHHHhCC--CcEEEEeccCCCCCCCCcHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSR-NP--APPDPMEPENTAKAIASWG--VDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~-~~--~~~~~eei~~~~~~~~~~G--~~~I~ltgg~~~~l~~~~~~~~~~li~~ik 177 (351)
...+...-++|+.+|.||.++... .. ...+.+.+.++++.+.+.| +..|+|.||+|..+ .+.+.++++.++
T Consensus 52 ~~~LYvHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l----~~~L~~ll~~i~ 127 (433)
T PRK08629 52 KYMLYAHVPFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTTTIL----EDELAKTLELAK 127 (433)
T ss_pred cEEEEEEeCCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCccccC----HHHHHHHHHHHH
Confidence 445566789999999999998632 11 1124566677776655544 66899999998644 268889999998
Q ss_pred HhCC--CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCH---HHHHHHHHHHHHhCCCCeEE
Q 018731 178 KQKP--DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGY---EQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 178 ~~~p--~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~---~~~l~~i~~~~~~~~Gi~v~ 251 (351)
+.++ ++++++ .|+. ++++.++.|+++ ++++++|+||+++ ..+.+. +.++. ++.++.++.+++ .+..++
T Consensus 128 ~~f~i~eis~E~-~P~~-lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~g-R~h~~~~~~~~~~~l~~~~~--~~~~v~ 201 (433)
T PRK08629 128 KLFSIKEVSCES-DPNH-LDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVD-RYEKFGSGQETFEKIMKAKG--LFPIIN 201 (433)
T ss_pred HhCCCceEEEEe-Cccc-CCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcC-CCCChhHHHHHHHHHHHHhc--cCCeEE
Confidence 8753 345554 4554 489999999999 9999999999876 455553 46665 455666655554 444689
Q ss_pred EeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccc-cCCCCHHHHHHHHHH---HHhcCcceeccCcc
Q 018731 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTV-KEYVTPEKFDFWKAY---GESIGFRYVASGPL 324 (351)
Q Consensus 252 ~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~-~~~v~~~e~~~~~~~---~~~~G~~~~~~~~~ 324 (351)
+++|+|+ |||.+++.++++++.++++++++++++. .| |+..... ....+.++...+.+. ... ||.++....+
T Consensus 202 ~DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~-Gy~~~s~~~f 280 (433)
T PRK08629 202 VDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFG-QYNQLSAWAF 280 (433)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHC-CCeEeccccc
Confidence 9999999 9999999999999999999999997554 44 6532111 112233332222222 222 9988766555
Q ss_pred ccc
Q 018731 325 VRS 327 (351)
Q Consensus 325 ~r~ 327 (351)
.+.
T Consensus 281 ~~~ 283 (433)
T PRK08629 281 SKK 283 (433)
T ss_pred CCC
Confidence 544
No 80
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.80 E-value=2.5e-18 Score=150.02 Aligned_cols=178 Identities=23% Similarity=0.355 Sum_probs=140.9
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCc---hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcE
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDP---MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM 184 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~---eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~ 184 (351)
.++++|+++|.||..+.......... +++.+.+......+...+.++||++. .. .++.++++.+++..+++.
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~--~~---~~~~~~i~~~~~~~~~~~ 76 (204)
T cd01335 2 ELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPL--LY---PELAELLRRLKKELPGFE 76 (204)
T ss_pred ccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCC--cc---HhHHHHHHHHHhhCCCce
Confidence 46899999999999987543322222 35566666667788999999999973 22 378899999998766778
Q ss_pred EEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCH
Q 018731 185 VECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESD 262 (351)
Q Consensus 185 i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~ 262 (351)
+.+.|+...++++.++.|+++|++.+.+++|+.++ .++.+..+..++++++++++.+++ .|+.+.+.+++|+ +++.
T Consensus 77 ~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~i~g~~~~~~ 154 (204)
T cd01335 77 ISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELRE--AGLGLSTTLLVGLGDEDE 154 (204)
T ss_pred EEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHH--cCCCceEEEEEecCCChh
Confidence 87777766558999999999999999999999876 343332136799999999999999 8999999999999 6667
Q ss_pred HHHHHHHHHHHhCC-CCEEeeeccc-CC-CCCc
Q 018731 263 DDLKEAMADLRSID-VDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 263 e~~~~~l~~l~~lg-~d~i~i~~~l-~P-Tp~~ 292 (351)
+++.++++++.+.+ ++.+.++++. .| |+++
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 155 EDDLEELELLAEFRSPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred HHHHHHHHHHHhhcCcchhhhhhhcccCCCeee
Confidence 99999999999988 8888886554 22 6654
No 81
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.80 E-value=1.1e-17 Score=157.00 Aligned_cols=205 Identities=15% Similarity=0.190 Sum_probs=143.4
Q ss_pred eEEEEeeccCCCC--------CCcCcccCCCCCCC---CCCchhH----HHHHHHHHhCCCcEEEEeccCCCCCCCCcHH
Q 018731 103 TATIMLLGDTCTR--------GCRFCAVKTSRNPA---PPDPMEP----ENTAKAIASWGVDYIVLTSVDRDDIPDGGSG 167 (351)
Q Consensus 103 ~~~~i~~s~gC~~--------~C~FC~~~~~~~~~---~~~~eei----~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~ 167 (351)
..-.+..+-.||+ .|+||+........ ....+++ .+..+.....+...++|+||+++.++ .+
T Consensus 18 ~k~~~~~g~~cpnrdg~~~~~gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt~t~l~---~~ 94 (302)
T TIGR01212 18 FKITLHGGFSCPNRDGTKGRGGCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYTNTYAP---VE 94 (302)
T ss_pred EEeecCCCCCCCCCCCCCCCCCcccCCCCCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCCcCCCC---HH
Confidence 4455667889997 79999986543211 1222334 33333333333345899999987666 58
Q ss_pred HHHHHHHHHHHhCCC-cEEEEe-ecCCCCCHHHHHHHH---HcCC-CeeecchhchHH-HHhhhcCCCCCHHHHHHHHHH
Q 018731 168 HFARTVKAMKKQKPD-IMVECL-TSDFRGDLRAVETLV---HSGL-DVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKH 240 (351)
Q Consensus 168 ~~~~li~~ik~~~p~-i~i~~~-~~~~~~~~e~l~~L~---~aG~-~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~ 240 (351)
++.++++.+++. |+ +.+.+. .|+.+ +++.++.|+ ++|+ .++.+|+||+++ ..+.++ +++++++++++++.
T Consensus 95 ~L~~l~~~i~~~-~~~~~isi~trpd~l-~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~-Rg~t~~~~~~ai~~ 171 (302)
T TIGR01212 95 VLKEMYEQALSY-DDVVGLSVGTRPDCV-PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKIN-RGHDFACYVDAVKR 171 (302)
T ss_pred HHHHHHHHHhCC-CCEEEEEEEecCCcC-CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHc-CcChHHHHHHHHHH
Confidence 999999999874 54 344443 35543 776665555 5699 579999999876 455554 58999999999999
Q ss_pred HHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccc--c--CCCCHHHH-HHHHHHHH
Q 018731 241 AKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTV--K--EYVTPEKF-DFWKAYGE 312 (351)
Q Consensus 241 ~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~--~--~~v~~~e~-~~~~~~~~ 312 (351)
+++ .|+.+++++|+|+ |||.+++.++++++.+++++.+.++.+. .| |+++... . ...+.+++ ..+....+
T Consensus 172 l~~--~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~ 249 (302)
T TIGR01212 172 ARK--RGIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLE 249 (302)
T ss_pred HHH--cCCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 999 9999999999999 9999999999999999999999996443 34 7776321 1 23445553 34455555
Q ss_pred hcC
Q 018731 313 SIG 315 (351)
Q Consensus 313 ~~G 315 (351)
.+.
T Consensus 250 ~l~ 252 (302)
T TIGR01212 250 HLP 252 (302)
T ss_pred hCC
Confidence 443
No 82
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.80 E-value=7.5e-18 Score=160.35 Aligned_cols=191 Identities=18% Similarity=0.217 Sum_probs=143.8
Q ss_pred EEEEeeccCCCCCCcCcccCCCC---CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSR---NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~---~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
+-.+.+|++||.+|.||...... ....++.+|+.+.++.+.+.|++.|.||||+|. +. +++.++++.+++.
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPl-lr----~dl~~li~~i~~~- 88 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPL-VR----RGCDQLVARLGKL- 88 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCC-cc----ccHHHHHHHHHhC-
Confidence 34456899999999999854321 123467889999999998999999999999973 33 4688899998875
Q ss_pred CCc-EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEeeeee
Q 018731 181 PDI-MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL-ITKSSIMLG 257 (351)
Q Consensus 181 p~i-~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi-~v~~~~IvG 257 (351)
+++ .+.+.|++.. ..+.++.|+++|+++|++++++.++ .++.++ +..+++++++.++.+++ .|+ .+..++++-
T Consensus 89 ~~l~~i~itTNG~l-l~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~-~~g~~~~vl~~i~~~~~--~Gi~~v~in~v~~ 164 (329)
T PRK13361 89 PGLEELSLTTNGSR-LARFAAELADAGLKRLNISLDTLRPELFAALT-RNGRLERVIAGIDAAKA--AGFERIKLNAVIL 164 (329)
T ss_pred CCCceEEEEeChhH-HHHHHHHHHHcCCCeEEEEeccCCHHHhhhhc-CCCCHHHHHHHHHHHHH--cCCCceEEEEEEE
Confidence 344 4555566554 3468999999999999999999876 566666 46799999999999999 899 677776653
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCc--ccccCCCCHHHHHH
Q 018731 258 LGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH--LTVKEYVTPEKFDF 306 (351)
Q Consensus 258 lgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~--~~~~~~v~~~e~~~ 306 (351)
-|++.+++.+++++++++|++...+ .++ |.... +.....++.+++..
T Consensus 165 ~g~N~~ei~~~~~~~~~~gi~~~~i-e~m-P~g~~~~~~~~~~~~~~e~~~ 213 (329)
T PRK13361 165 RGQNDDEVLDLVEFCRERGLDIAFI-EEM-PLGEIDERRRARHCSSDEVRA 213 (329)
T ss_pred CCCCHHHHHHHHHHHHhcCCeEEEE-ecc-cCCCccchhhccCcCHHHHHH
Confidence 3899999999999999999986544 443 63221 11234567766644
No 83
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.78 E-value=5.3e-17 Score=157.49 Aligned_cols=171 Identities=13% Similarity=0.169 Sum_probs=141.2
Q ss_pred eEEEEeeccCCCCCCcCcccCCCC--CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSR--NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~--~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
....+.+|+.||.+|.||+..... ....++.+++.+.++.+.+.|+..|.|+||+|. +. .++.++++.+++.
T Consensus 16 ~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPl-l~----~~~~~il~~~~~~- 89 (378)
T PRK05301 16 LWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPL-LR----KDLEELVAHAREL- 89 (378)
T ss_pred eEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccC-Cc----hhHHHHHHHHHHc-
Confidence 556678899999999999876432 233567788889999888899999999999973 43 4688999999876
Q ss_pred CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC
Q 018731 181 PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG 259 (351)
Q Consensus 181 p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg 259 (351)
++.+.+.|++.+++++.++.|+++|++.|.+++++.++ .++.+++...++++.+++++.+++ .|+.+...+++ ..
T Consensus 90 -g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~--~g~~v~i~~vv-~~ 165 (378)
T PRK05301 90 -GLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKA--HGYPLTLNAVI-HR 165 (378)
T ss_pred -CCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHH--CCCceEEEEEe-ec
Confidence 56666777877789999999999999999999999754 677777434589999999999999 99987766654 37
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeee
Q 018731 260 ESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 260 Et~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
++.+++.++++++.++|++.+.+.
T Consensus 166 ~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 166 HNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 899999999999999999998884
No 84
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.78 E-value=3.6e-18 Score=144.74 Aligned_cols=158 Identities=23% Similarity=0.363 Sum_probs=124.8
Q ss_pred EeeccCCCCCCcCcccCCC--C-CCCCCCchhHHHHHHHH-HhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh-CC
Q 018731 107 MLLGDTCTRGCRFCAVKTS--R-NPAPPDPMEPENTAKAI-ASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ-KP 181 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~--~-~~~~~~~eei~~~~~~~-~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~-~p 181 (351)
+.++++|+++|.||..+.. . .....+++++.+.++.+ ...|+..+.++||+|... ..+.+++..+.+. ..
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~-----~~~~~~~~~~~~~~~~ 75 (166)
T PF04055_consen 1 IETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLH-----PDFIELLELLRKIKKR 75 (166)
T ss_dssp EEEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGS-----CHHHHHHHHHHHCTCT
T ss_pred CEECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcc-----hhHHHHHHHHHHhhcc
Confidence 4679999999999999874 2 12335678899999988 588888899999987433 3566666666654 24
Q ss_pred CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH--HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-
Q 018731 182 DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR--LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL- 258 (351)
Q Consensus 182 ~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~--~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl- 258 (351)
++.+...+++...+++.++.++++|++.+.++++|.++ ..+.++ ++.++++++++++.+++ .|+.....+|+|+
T Consensus 76 ~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~-~~~~~~~~~~~l~~l~~--~g~~~~~~~i~~~~ 152 (166)
T PF04055_consen 76 GIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIIN-RGKSFERVLEALERLKE--AGIPRVIIFIVGLP 152 (166)
T ss_dssp TEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS-STSHHHHHHHHHHHHHH--TTSETEEEEEEEBT
T ss_pred ccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhc-CCCCHHHHHHHHHHHHH--cCCCcEEEEEEEeC
Confidence 67777777777666999999999999999999999876 457775 57899999999999999 9998556667777
Q ss_pred CCCHHHHHHHHHHH
Q 018731 259 GESDDDLKEAMADL 272 (351)
Q Consensus 259 gEt~e~~~~~l~~l 272 (351)
|+|++++.++++++
T Consensus 153 ~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 153 GENDEEIEETIRFI 166 (166)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcC
Confidence 99999999999885
No 85
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.76 E-value=8.8e-17 Score=153.45 Aligned_cols=174 Identities=18% Similarity=0.221 Sum_probs=136.9
Q ss_pred EEEEeeccCCCCCCcCcccCC-CC----CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKT-SR----NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~-~~----~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
+-.+.+|++||.+|.||.... .. ....++.+++.+.++.+.+.|++.|.|+||+|. +. .++.++++.+++
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPl-l~----~~l~~li~~i~~ 85 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPL-LR----KDLVELVARLAA 85 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcccc-cc----CCHHHHHHHHHh
Confidence 444578999999999998764 21 123467889999999998999999999999973 32 357788888876
Q ss_pred hCCCc-EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeee
Q 018731 179 QKPDI-MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIM 255 (351)
Q Consensus 179 ~~p~i-~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~I 255 (351)
. +++ .+.+.|++.. ..+.++.|+++|+++|++++++.++ .++.+++++.+++++++.++.+++ .|+. +..+++
T Consensus 86 ~-~gi~~v~itTNG~l-l~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~--~G~~~v~in~v 161 (334)
T TIGR02666 86 L-PGIEDIALTTNGLL-LARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALA--AGLEPVKLNTV 161 (334)
T ss_pred c-CCCCeEEEEeCchh-HHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHH--cCCCcEEEEEE
Confidence 4 456 6666666544 5678999999999999999999876 456565235699999999999999 9997 888877
Q ss_pred eeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 256 LGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 256 vGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
+.-|.+.+++.+.+++++++|++. .+..++ |
T Consensus 162 v~~g~n~~ei~~l~~~~~~~gv~~-~~ie~m-p 192 (334)
T TIGR02666 162 VMRGVNDDEIVDLAEFAKERGVTL-RFIELM-P 192 (334)
T ss_pred EeCCCCHHHHHHHHHHHHhcCCeE-EEEecc-C
Confidence 655899999999999999999973 442343 6
No 86
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.76 E-value=1.3e-16 Score=153.72 Aligned_cols=171 Identities=17% Similarity=0.223 Sum_probs=140.3
Q ss_pred eEEEEeeccCCCCCCcCcccCCC--CCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTS--RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~--~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
....+.+|+.||.+|.||..+.. +....++.+++.+.++++.+.|+..|.|+||+|. +. +++.++++.+++.
T Consensus 7 ~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPl-l~----~~~~~ii~~~~~~- 80 (358)
T TIGR02109 7 LWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPL-AR----PDLVELVAHARRL- 80 (358)
T ss_pred cEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCcccc-cc----ccHHHHHHHHHHc-
Confidence 45567889999999999987542 1224577888889999988899999999999974 43 4688999999886
Q ss_pred CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC
Q 018731 181 PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG 259 (351)
Q Consensus 181 p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg 259 (351)
++.+.+.|++.+++++.++.|+++|++.|.+++++.++ .++.+++...++++.+++++.+++ .|+.+...+++ ..
T Consensus 81 -g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~--~g~~v~v~~vv-~~ 156 (358)
T TIGR02109 81 -GLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKA--AGLPLTLNFVI-HR 156 (358)
T ss_pred -CCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHh--CCCceEEEEEe-cc
Confidence 56666777887789999999999999999999999865 576676334579999999999999 89987666554 27
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeee
Q 018731 260 ESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 260 Et~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
++.+++.++++++.++|++.+.+.
T Consensus 157 ~N~~~l~~~~~~~~~lg~~~i~~~ 180 (358)
T TIGR02109 157 HNIDQIPEIIELAIELGADRVELA 180 (358)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 899999999999999999988873
No 87
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.75 E-value=1.1e-16 Score=152.58 Aligned_cols=173 Identities=17% Similarity=0.223 Sum_probs=134.4
Q ss_pred EEEEeeccCCCCCCcCcccCCC----CCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTS----RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~----~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
+-.+.+|.+||.+|.||..... .....++++++.+.++.+.+.|++.|.|+||+|. +. .++.++++.+++.
T Consensus 18 ~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPl-l~----~~l~~li~~i~~~ 92 (331)
T PRK00164 18 YLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPL-LR----KDLEDIIAALAAL 92 (331)
T ss_pred eEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCc-Cc----cCHHHHHHHHHhc
Confidence 4446789999999999987642 1223467889999998888899999999999973 32 3578888888875
Q ss_pred CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEeeeee
Q 018731 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL-ITKSSIMLG 257 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi-~v~~~~IvG 257 (351)
.....+.+.|++.. ..+.++.|+++|++++++++++.++ .++.++ +..++++++++++.+++ .|+ .+..++++-
T Consensus 93 ~~~~~i~itTNG~l-l~~~~~~L~~agl~~i~ISlds~~~e~~~~i~-~~~~~~~vl~~i~~~~~--~g~~~v~i~~vv~ 168 (331)
T PRK00164 93 PGIRDLALTTNGYL-LARRAAALKDAGLDRVNVSLDSLDPERFKAIT-GRDRLDQVLAGIDAALA--AGLTPVKVNAVLM 168 (331)
T ss_pred CCCceEEEEcCchh-HHHHHHHHHHcCCCEEEEEeccCCHHHhccCC-CCCCHHHHHHHHHHHHH--CCCCcEEEEEEEE
Confidence 32345666566543 4578899999999999999999876 465555 35799999999999999 898 777777653
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 258 LGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 258 lgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
-|.+.+++.+.+++++++|++.-.+ .|+
T Consensus 169 ~g~n~~ei~~l~~~~~~~gv~v~~i-e~~ 196 (331)
T PRK00164 169 KGVNDDEIPDLLEWAKDRGIQLRFI-ELM 196 (331)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEE-Eee
Confidence 3889999999999999999864333 454
No 88
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.74 E-value=3.2e-16 Score=147.78 Aligned_cols=180 Identities=18% Similarity=0.281 Sum_probs=131.7
Q ss_pred eEEEEeeccCCCC----CCcCcccCCCCCCCCCCchhHHHHHHHHHh-CCCcE----E-EEecc---CCCCCCCCcHHHH
Q 018731 103 TATIMLLGDTCTR----GCRFCAVKTSRNPAPPDPMEPENTAKAIAS-WGVDY----I-VLTSV---DRDDIPDGGSGHF 169 (351)
Q Consensus 103 ~~~~i~~s~gC~~----~C~FC~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~----I-~ltgg---~~~~l~~~~~~~~ 169 (351)
..+++..|+||++ +|.||++.... ....+++.+.+.++.+.+ .+.+. + .+++| ++..++ .+.+
T Consensus 15 ~~~~i~~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~---~~~~ 90 (313)
T TIGR01210 15 SLTIILRTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVP---KETR 90 (313)
T ss_pred eEEEEEeCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCC---HHHH
Confidence 5566788999999 59999866533 223467777777766543 33321 2 35665 333334 4677
Q ss_pred HHHHHHHHHhCC--CcEEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HH-hhhcCCCCCHHHHHHHHHHHHHh
Q 018731 170 ARTVKAMKKQKP--DIMVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQ-RIVRDPRAGYEQSLEVLKHAKLS 244 (351)
Q Consensus 170 ~~li~~ik~~~p--~i~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~-~~~r~~~~~~~~~l~~i~~~~~~ 244 (351)
.++++.+++... .+.+++ .++.+ +++.++.|+++|++ +|++|+||+++ .. +.++ ++++.++..++++.+++
T Consensus 91 ~~i~~~l~~~~~~~~i~~es-rpd~i-~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~in-Kg~t~~~~~~ai~~~~~- 166 (313)
T TIGR01210 91 NYIFEKIAQRDNLKEVVVES-RPEFI-DEEKLEELRKIGVNVEVAVGLETANDRIREKSIN-KGSTFEDFIRAAELARK- 166 (313)
T ss_pred HHHHHHHHhcCCcceEEEEe-CCCcC-CHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhC-CCCCHHHHHHHHHHHHH-
Confidence 889988887421 233443 45554 89999999999998 89999999876 45 3555 68999999999999999
Q ss_pred CCCCeEEEeeeeeC-C----CCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCc
Q 018731 245 KKGLITKSSIMLGL-G----ESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 245 ~~Gi~v~~~~IvGl-g----Et~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~ 292 (351)
.|+.+.+++|+|+ + |+.+++.++++++.+++ +++.+++.. .| |+++
T Consensus 167 -~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~ 219 (313)
T TIGR01210 167 -YGAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVE 219 (313)
T ss_pred -cCCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHH
Confidence 9999999999998 5 55677888999999999 999986432 34 7654
No 89
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.74 E-value=5.7e-16 Score=149.39 Aligned_cols=173 Identities=17% Similarity=0.249 Sum_probs=132.8
Q ss_pred EEEEeeccCCCCCCcCcccCCCC----CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSR----NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~----~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
+--+.+|++||.+|.||...... ....++.+++.+.++.+.+.|++.|.||||+|. +. .++.++++.+++.
T Consensus 59 ~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPl-lr----~dl~eli~~l~~~ 133 (373)
T PLN02951 59 YLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPT-LR----KDIEDICLQLSSL 133 (373)
T ss_pred EEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCc-ch----hhHHHHHHHHHhc
Confidence 33467899999999999875321 112367789999998888999999999999973 33 4688899988875
Q ss_pred CCCc-EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEeeee
Q 018731 180 KPDI-MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL-ITKSSIML 256 (351)
Q Consensus 180 ~p~i-~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi-~v~~~~Iv 256 (351)
+++ .+.+.|++.. ..+.++.|+++|+++|++++++.++ .++.++ +...++++++.|+.+++ .|+ .+..++++
T Consensus 134 -~gi~~i~itTNG~l-L~~~~~~L~~aGld~VnISLDsl~~e~~~~it-r~~~~~~vl~~I~~a~~--~G~~~vkin~vv 208 (373)
T PLN02951 134 -KGLKTLAMTTNGIT-LSRKLPRLKEAGLTSLNISLDTLVPAKFEFLT-RRKGHDRVLESIDTAIE--LGYNPVKVNCVV 208 (373)
T ss_pred -CCCceEEEeeCcch-HHHHHHHHHhCCCCeEEEeeccCCHHHHHHHh-cCCCHHHHHHHHHHHHH--cCCCcEEEEEEe
Confidence 455 3555566554 4567899999999999999999865 565554 24578999999999999 887 47777665
Q ss_pred eCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 257 GLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 257 GlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
--|.|.+++.+.++++++.+++.-.+ .++ |
T Consensus 209 ~~g~N~~Ei~~li~~a~~~gi~vr~i-e~m-P 238 (373)
T PLN02951 209 MRGFNDDEICDFVELTRDKPINVRFI-EFM-P 238 (373)
T ss_pred cCCCCHHHHHHHHHHHHhCCCeEEEE-Ecc-c
Confidence 44899999999999999999764333 454 5
No 90
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.72 E-value=3e-16 Score=147.74 Aligned_cols=165 Identities=16% Similarity=0.263 Sum_probs=132.0
Q ss_pred EEEEeeccCCCCCCcCcccCCCCC--CCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRN--PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~--~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p 181 (351)
.-.+.+|++||.+|.||....... ...++.+++.+.++.+...|++.|.|+||+|. +. ..+.++++.+++.
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPl-l~----~~l~~iv~~l~~~-- 83 (302)
T TIGR02668 11 SLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPL-LR----KDLIEIIRRIKDY-- 83 (302)
T ss_pred eEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccc-cc----cCHHHHHHHHHhC--
Confidence 445678999999999998764322 13467788988888888899999999999973 33 3577888888875
Q ss_pred Cc-EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeC
Q 018731 182 DI-MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGL 258 (351)
Q Consensus 182 ~i-~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGl 258 (351)
++ .+.+.|++.. ..+.++.|+++|+++|++++++.++ .++.++ ++.++++++++++.+++ .|+. +...+++--
T Consensus 84 g~~~v~i~TNG~l-l~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~-~~~~~~~vl~~i~~~~~--~G~~~v~i~~v~~~ 159 (302)
T TIGR02668 84 GIKDVSMTTNGIL-LEKLAKKLKEAGLDRVNVSLDTLDPEKYKKIT-GRGALDRVIEGIESAVD--AGLTPVKLNMVVLK 159 (302)
T ss_pred CCceEEEEcCchH-HHHHHHHHHHCCCCEEEEEecCCCHHHhhhcc-CCCcHHHHHHHHHHHHH--cCCCcEEEEEEEeC
Confidence 44 5655555543 4688899999999999999999865 566665 35799999999999999 8986 777776634
Q ss_pred CCCHHHHHHHHHHHHhCCCCE
Q 018731 259 GESDDDLKEAMADLRSIDVDI 279 (351)
Q Consensus 259 gEt~e~~~~~l~~l~~lg~d~ 279 (351)
|++.+++.+.+++++++|++.
T Consensus 160 g~n~~ei~~~~~~~~~~g~~~ 180 (302)
T TIGR02668 160 GINDNEIPDMVEFAAEGGAIL 180 (302)
T ss_pred CCCHHHHHHHHHHHHhcCCEE
Confidence 899999999999999999873
No 91
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=99.72 E-value=4.9e-17 Score=151.27 Aligned_cols=241 Identities=20% Similarity=0.287 Sum_probs=172.0
Q ss_pred cceeccccCCCCCCCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCC
Q 018731 36 QRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTR 115 (351)
Q Consensus 36 ~~~~~~~~~~~~~~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~ 115 (351)
+-..||.+-|+...-.+|.|+.... .|..--.+ +| .+++.+..-. -++ .+ ...+.+|+.+.+||++
T Consensus 167 ~~kmVdivaGPDaYrDLPrll~~~~-~g~~~in~--~L---sldetyadv~--pvr---~~---~~s~tAFvSiMRGCdN 232 (552)
T KOG2492|consen 167 REKMVDIVAGPDAYRDLPRLLAVAR-GGQNGINV--LL---SLDETYADVQ--PVR---VS---SSSTTAFVSIMRGCDN 232 (552)
T ss_pred hhhceeeeeCchhhhhhHHHHHHHh-ccCCceeE--EE---eccchhcccc--eee---cc---CccchhHHHHHhcccc
Confidence 4557788888888778888876332 23321110 01 2222222111 111 11 1126788999999999
Q ss_pred CCcCcccCCCCCCCCCCc-hhHHHHHHHHHhCCCcEEEEeccCCCCCCC--------------------------CcHHH
Q 018731 116 GCRFCAVKTSRNPAPPDP-MEPENTAKAIASWGVDYIVLTSVDRDDIPD--------------------------GGSGH 168 (351)
Q Consensus 116 ~C~FC~~~~~~~~~~~~~-eei~~~~~~~~~~G~~~I~ltgg~~~~l~~--------------------------~~~~~ 168 (351)
-|+||.+|..++..+..| +.|+++++.+.+.|+++|.|.|.+...+.| +| -.
T Consensus 233 MCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K~gG-l~ 311 (552)
T KOG2492|consen 233 MCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPKQGG-LR 311 (552)
T ss_pred ccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCCCceeeecccCCC-cc
Confidence 999999999887655555 789999999999999999999976322211 12 37
Q ss_pred HHHHHHHHHHhCCCcEEEEeecCC-CCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHh
Q 018731 169 FARTVKAMKKQKPDIMVECLTSDF-RGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLS 244 (351)
Q Consensus 169 ~~~li~~ik~~~p~i~i~~~~~~~-~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~ 244 (351)
|..+++.+....|++++...+|.- ...+|.++.+++.- +..+.+-.+|.+. ..++++ ++++.+..++.+..+++.
T Consensus 312 Fa~LLd~vs~~~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mr-Rgysreayl~lv~~Irs~ 390 (552)
T KOG2492|consen 312 FAHLLDQVSRADPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMR-RGYSREAYLELVAHIRSM 390 (552)
T ss_pred HHHHHHHHhhhCcceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHH-ccCChHhhhhHHHHHHhh
Confidence 899999999999999887655421 12578888888763 2333444677654 445555 588999999999999998
Q ss_pred CCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCc
Q 018731 245 KKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 245 ~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~ 292 (351)
-||...+++||.|+ |||++|.+.|+-++++.|-|++.++.|. +- |..|
T Consensus 391 iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay 441 (552)
T KOG2492|consen 391 IPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAY 441 (552)
T ss_pred CCCCcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhh
Confidence 89999999999999 9999999999999999999998887666 33 6555
No 92
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.72 E-value=2.4e-16 Score=146.26 Aligned_cols=164 Identities=19% Similarity=0.249 Sum_probs=132.6
Q ss_pred EEEeeccCCCCCCcCcccCC-C-CCC--CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 105 TIMLLGDTCTRGCRFCAVKT-S-RNP--APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~-~-~~~--~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
--+.+|+.||++|.||-..- . ..+ ..++++|+...++.+.+.|++.|-||||+| .+. .++.++++.+++.
T Consensus 13 LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEP-llR----~dl~eIi~~l~~~- 86 (322)
T COG2896 13 LRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEP-LLR----KDLDEIIARLARL- 86 (322)
T ss_pred EEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCc-hhh----cCHHHHHHHHhhc-
Confidence 33568999999999998754 1 122 246789999999999999999999999997 343 5788889888876
Q ss_pred CCc-EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeee
Q 018731 181 PDI-MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLG 257 (351)
Q Consensus 181 p~i-~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvG 257 (351)
++ .+.+ |+++.+.+..++.|++||+++|+++++|+++ .++.+. ....++++++.|+.|.+ .|+. |+.++++=
T Consensus 87 -~~~~isl-TTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT-~~~~~~~Vl~GI~~A~~--~Gl~pVKlN~Vv~ 161 (322)
T COG2896 87 -GIRDLSL-TTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKIT-GRDRLDRVLEGIDAAVE--AGLTPVKLNTVLM 161 (322)
T ss_pred -ccceEEE-ecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHh-CCCcHHHHHHHHHHHHH--cCCCceEEEEEEe
Confidence 32 4444 4444457889999999999999999999987 466665 34569999999999999 9996 99988873
Q ss_pred CCCCHHHHHHHHHHHHhCCCCE
Q 018731 258 LGESDDDLKEAMADLRSIDVDI 279 (351)
Q Consensus 258 lgEt~e~~~~~l~~l~~lg~d~ 279 (351)
=|-+.+++.+.++++++.|+..
T Consensus 162 kgvNd~ei~~l~e~~~~~~~~l 183 (322)
T COG2896 162 KGVNDDEIEDLLEFAKERGAQL 183 (322)
T ss_pred cCCCHHHHHHHHHHHhhcCCce
Confidence 3889999999999999999853
No 93
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.71 E-value=1.1e-15 Score=144.53 Aligned_cols=168 Identities=12% Similarity=0.148 Sum_probs=129.7
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
....+.+|..||.+|.||........ ..++++++.+.+ .+.|+..|.|+||+|. +. +++.++++.+++.
T Consensus 28 l~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i---~e~g~~~V~i~GGEPL-L~----pdl~eiv~~~~~~ 99 (318)
T TIGR03470 28 LVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAV---DECGAPVVSIPGGEPL-LH----PEIDEIVRGLVAR 99 (318)
T ss_pred CEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHH---HHcCCCEEEEeCcccc-cc----ccHHHHHHHHHHc
Confidence 55567789999999999987543211 235666665544 4568999999999973 43 4688899998876
Q ss_pred CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC
Q 018731 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG 259 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg 259 (351)
+..+.+.|++.++ .+.++.++++|...|++++++.++.++..++...++++++++|+.+++ .|+.+...+.+=-+
T Consensus 100 --g~~v~l~TNG~ll-~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~--~G~~v~v~~tv~~~ 174 (318)
T TIGR03470 100 --KKFVYLCTNALLL-EKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKA--RGFRVTTNTTLFND 174 (318)
T ss_pred --CCeEEEecCceeh-HHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHH--CCCcEEEEEEEeCC
Confidence 4566666776655 456888999999999999999877665444345799999999999999 89987776655227
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeee
Q 018731 260 ESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 260 Et~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
++.+++.+.++++.++|++.+.+.
T Consensus 175 ~n~~ei~~~~~~~~~lGv~~i~i~ 198 (318)
T TIGR03470 175 TDPEEVAEFFDYLTDLGVDGMTIS 198 (318)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 899999999999999999988874
No 94
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.71 E-value=2.8e-15 Score=147.31 Aligned_cols=202 Identities=17% Similarity=0.250 Sum_probs=146.0
Q ss_pred eEEEEeeccCCCCCCcCcccCCC-----C-C--CCCCCchhHHHHHHHHHhC--CCcEEEEec-cCCCCCCCCcHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTS-----R-N--PAPPDPMEPENTAKAIASW--GVDYIVLTS-VDRDDIPDGGSGHFAR 171 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~-----~-~--~~~~~~eei~~~~~~~~~~--G~~~I~ltg-g~~~~l~~~~~~~~~~ 171 (351)
-+..+.++++||.+|.||...+. + + ...++++|+.+.++.+... ++..|.|+| |+|. +. .+...+
T Consensus 24 ~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPL-l~---~e~~~~ 99 (442)
T TIGR01290 24 ARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPL-AN---IGKTFQ 99 (442)
T ss_pred CEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcc-cC---ccccHH
Confidence 45667889999999999986432 1 1 1346788998888877653 577899999 8873 32 246778
Q ss_pred HHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhh------cCC---CC-----CHHHHHH
Q 018731 172 TVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIV------RDP---RA-----GYEQSLE 236 (351)
Q Consensus 172 li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~------r~~---~~-----~~~~~l~ 236 (351)
+++.+++..|++.+.+.|++.. .++.++.|+++|+|.|.+++.+.++ .++.+ +++ +. .+++.++
T Consensus 100 ~l~~~~~~~~~i~i~lsTNG~~-l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~ 178 (442)
T TIGR01290 100 TLELVARQLPDVKLCLSTNGLM-LPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLE 178 (442)
T ss_pred HHHHHHHhcCCCeEEEECCCCC-CHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHH
Confidence 8888988878888877676654 5899999999999999999998765 44322 111 11 1566789
Q ss_pred HHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCC-----cccccCCCCHHHHHHHHHHH
Q 018731 237 VLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPL-----HLTVKEYVTPEKFDFWKAYG 311 (351)
Q Consensus 237 ~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~-----~~~~~~~v~~~e~~~~~~~~ 311 (351)
.++.+.+ .|+.+...+++--|.|++++.+++++++++|++.+.+.+|. |.|. .+.....++++++..+++.+
T Consensus 179 ~l~~l~~--~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg~~~~nl~p~~-~~p~~G~~~~~~~~~~ps~e~l~~~~~~~ 255 (442)
T TIGR01290 179 GLEKLTE--RGILVKVNSVLIPGINDEHLVEVSKQVKELGAFLHNVMPLI-SAPEHGTVYGLNGQREPDPDELAALRDRL 255 (442)
T ss_pred HHHHHHh--CCCeEEEEEEeeCCcCHHHHHHHHHHHHhCCCcEEEeecCC-CccccCCccCcCCCCCcCHHHHHHHHHHH
Confidence 9999998 89887666555336777999999999999999888776553 4332 22223557788888777654
Q ss_pred H
Q 018731 312 E 312 (351)
Q Consensus 312 ~ 312 (351)
+
T Consensus 256 ~ 256 (442)
T TIGR01290 256 E 256 (442)
T ss_pred H
Confidence 4
No 95
>PRK01254 hypothetical protein; Provisional
Probab=99.71 E-value=5.4e-16 Score=154.65 Aligned_cols=186 Identities=15% Similarity=0.191 Sum_probs=138.0
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC--CCCCchhHHHHHHHHHhC--CCcEEE--EeccCCCCCC----C---------
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP--APPDPMEPENTAKAIASW--GVDYIV--LTSVDRDDIP----D--------- 163 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~--~~~~~eei~~~~~~~~~~--G~~~I~--ltgg~~~~l~----~--------- 163 (351)
....+.+++||+.+|+||+++..++. ..++.++|+++++.+.+. |+++++ |+|.+...+. +
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 45677899999999999999987765 235678999999999863 999998 7776643321 0
Q ss_pred -------------CcHHHHHHHHHHHHHhCCCc-EEEEee--c-CCC-CCHHHHHHHHHcCCC-eeecchhchHH-HHhh
Q 018731 164 -------------GGSGHFARTVKAMKKQKPDI-MVECLT--S-DFR-GDLRAVETLVHSGLD-VFAHNIETVKR-LQRI 223 (351)
Q Consensus 164 -------------~~~~~~~~li~~ik~~~p~i-~i~~~~--~-~~~-~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~ 223 (351)
.+-..+.+|++.|++. |++ .+.+.+ + ++. .+++.++.|++.++. .+.+.+|+.++ +.+.
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr~I-pGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~ 530 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRARDL-KGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSK 530 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHHhC-CCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHH
Confidence 1125789999999874 565 333322 2 221 258899999997766 55678999765 5555
Q ss_pred hcCCC-CCHHHHHHHHHHHHHhCC-CCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCC
Q 018731 224 VRDPR-AGYEQSLEVLKHAKLSKK-GLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTP 290 (351)
Q Consensus 224 ~r~~~-~~~~~~l~~i~~~~~~~~-Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp 290 (351)
++.++ .++++..+.++.+++..+ ++.+.++||+|+ |||++|+.++++++++++++.-.+ +.+.|||
T Consensus 531 M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQV-Q~FTPtP 599 (707)
T PRK01254 531 MMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQV-QNFYPSP 599 (707)
T ss_pred hCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCccee-eeeecCC
Confidence 65232 688999999999876432 456778999999 999999999999999999887777 4556877
No 96
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.67 E-value=1.5e-14 Score=143.93 Aligned_cols=204 Identities=17% Similarity=0.181 Sum_probs=145.0
Q ss_pred ceeeEEEEeeccCCCC-CCcCccc-------CCCC---CC-------CCCCc-hhHHHHHHHHHhCC--Cc--EEEEecc
Q 018731 100 GIATATIMLLGDTCTR-GCRFCAV-------KTSR---NP-------APPDP-MEPENTAKAIASWG--VD--YIVLTSV 156 (351)
Q Consensus 100 ~~~~~~~i~~s~gC~~-~C~FC~~-------~~~~---~~-------~~~~~-eei~~~~~~~~~~G--~~--~I~ltgg 156 (351)
+|...++|--=-.||+ +|.||-- +.+. .| ...+| +++...++++...| ++ +++|.||
T Consensus 65 gv~~v~vm~~p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GG 144 (522)
T TIGR01211 65 GVAVVAVMTSPHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGG 144 (522)
T ss_pred CeEEEEEecCCccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECC
Confidence 3556666655567994 7999964 2111 11 01223 46667777777766 43 4488999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhCCC-------------------------cEEEEe-ecCCCCCHHHHHHHHHcCCCee
Q 018731 157 DRDDIPDGGSGHFARTVKAMKKQKPD-------------------------IMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 157 ~~~~l~~~~~~~~~~li~~ik~~~p~-------------------------i~i~~~-~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+...++ .++...+++.+.+.+++ +.+.+- .|+.. +++.++.|+++|+++|
T Consensus 145 Tft~l~---~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i-~~e~L~~L~~~G~~rV 220 (522)
T TIGR01211 145 TFPARD---LDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYC-REEHIDRMLKLGATRV 220 (522)
T ss_pred CcccCC---HHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcC-CHHHHHHHHHcCCCEE
Confidence 987777 46666666666654322 222222 46654 8999999999999999
Q ss_pred ecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHh---CCCCEEeeecc
Q 018731 211 AHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS---IDVDILTLGQY 285 (351)
Q Consensus 211 ~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~---lg~d~i~i~~~ 285 (351)
++|+||+++ ..+.++ ++++.++++++++.+++ .|+.+++++|+|+ |+|.+++.++++.+.+ +++|.+.+++.
T Consensus 221 slGVQS~~d~VL~~in-Rght~~~v~~Ai~~lr~--~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl 297 (522)
T TIGR01211 221 ELGVQTIYNDILERTK-RGHTVRDVVEATRLLRD--AGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPT 297 (522)
T ss_pred EEECccCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecc
Confidence 999999876 455554 58999999999999999 9999999999999 9999999999999974 99999999754
Q ss_pred c-CC-CCCccc--c--cCCCCHHHHHHHHHH
Q 018731 286 L-QP-TPLHLT--V--KEYVTPEKFDFWKAY 310 (351)
Q Consensus 286 l-~P-Tp~~~~--~--~~~v~~~e~~~~~~~ 310 (351)
. .| |+++.. . ....+.+++..+...
T Consensus 298 ~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~ 328 (522)
T TIGR01211 298 LVTRGTELYELWKRGEYKPYTTEEAVELIVE 328 (522)
T ss_pred eeeCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 4 44 777521 1 123455555554433
No 97
>PRK00955 hypothetical protein; Provisional
Probab=99.67 E-value=4.4e-15 Score=149.02 Aligned_cols=179 Identities=13% Similarity=0.159 Sum_probs=121.9
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC--CCCchhHHHHHHHHHhC-CCcEEE--EeccCCCCCC---------------
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA--PPDPMEPENTAKAIASW-GVDYIV--LTSVDRDDIP--------------- 162 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~--~~~~eei~~~~~~~~~~-G~~~I~--ltgg~~~~l~--------------- 162 (351)
....+.+++||+.+|+||+++..++.. .++.++|+++++.+.+. |++.++ ++|.+...+.
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 445667899999999999999877653 45678999999998876 788764 3332211110
Q ss_pred -----------CCcHHHHHHHHHHHHHhCCCc-EEEEee---cCCC---CCHHHHHHHHHcCCC-eeecchhchHH-HHh
Q 018731 163 -----------DGGSGHFARTVKAMKKQKPDI-MVECLT---SDFR---GDLRAVETLVHSGLD-VFAHNIETVKR-LQR 222 (351)
Q Consensus 163 -----------~~~~~~~~~li~~ik~~~p~i-~i~~~~---~~~~---~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~ 222 (351)
+.+...+.+|+++|++. |++ ++.+.+ .+.+ .+++.++.|.+.++. .+.+++|+.++ +.+
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~~l-~gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk 450 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVRKL-PGVKKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLK 450 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHhcc-CCceEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHH
Confidence 01124789999999874 554 332211 1222 134588888886444 57889999765 556
Q ss_pred hhcCCCCCHH---HHHHHHH-HHHHhCCCCe--EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 223 IVRDPRAGYE---QSLEVLK-HAKLSKKGLI--TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 223 ~~r~~~~~~~---~~l~~i~-~~~~~~~Gi~--v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
.++ +. +.+ +.++.++ .+++ .|+. +.++||+|+ |||.+|+.++++++++++++.++++.|.
T Consensus 451 ~M~-K~-~~~~~~~f~~~~~~i~~~--~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fT 517 (620)
T PRK00955 451 LMG-KP-SREVYDKFVKKFDRINKK--LGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFY 517 (620)
T ss_pred HhC-CC-CHHHHHHHHHHHHHhhhh--cCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeee
Confidence 665 22 433 3333333 3344 6665 899999999 9999999999999999999998886454
No 98
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.66 E-value=1.5e-14 Score=132.26 Aligned_cols=203 Identities=12% Similarity=0.128 Sum_probs=141.4
Q ss_pred EEEeeccCCCCCCcCcccCCCC---CCCCCCchhHHHHHHHHHh---CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSR---NPAPPDPMEPENTAKAIAS---WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~---~~~~~~~eei~~~~~~~~~---~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
..+..+.|||.+|.||..+... ....++++++.+.+..... .....|+|+||+|. +. .+.+.++++.+++
T Consensus 22 ~~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPl-l~---~~~~~~l~~~~k~ 97 (246)
T PRK11145 22 RFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAI-LQ---AEFVRDWFRACKK 97 (246)
T ss_pred EEEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHh-cC---HHHHHHHHHHHHH
Confidence 4457799999999999976532 1223667888777665432 23457999999973 33 3456799999998
Q ss_pred hCCCcEEEEeecCCCC-CHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--ee
Q 018731 179 QKPDIMVECLTSDFRG-DLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SI 254 (351)
Q Consensus 179 ~~p~i~i~~~~~~~~~-~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~ 254 (351)
. ++.+.+.|++... ..+.++.+.+. +|.+.+++++.++ .++.++ +.+.+..++.++.+.+ .|+.+.. .+
T Consensus 98 ~--g~~i~l~TNG~~~~~~~~~~~ll~~-~d~v~islk~~~~e~~~~~~--g~~~~~~l~~i~~l~~--~g~~v~i~~~l 170 (246)
T PRK11145 98 E--GIHTCLDTNGFVRRYDPVIDELLDV-TDLVMLDLKQMNDEIHQNLV--GVSNHRTLEFARYLAK--RNQKTWIRYVV 170 (246)
T ss_pred c--CCCEEEECCCCCCcchHHHHHHHHh-CCEEEECCCcCChhhccccc--CCChHHHHHHHHHHHh--CCCcEEEEEEE
Confidence 6 5666665666542 35777877764 8999999999866 566666 3456788999999988 7776544 44
Q ss_pred eeeCCCCHHHHHHHHHHHHhCC-CCEEeeecccCCCCC------c----ccccCCCCHHHHHHHHHHHHhcCccee
Q 018731 255 MLGLGESDDDLKEAMADLRSID-VDILTLGQYLQPTPL------H----LTVKEYVTPEKFDFWKAYGESIGFRYV 319 (351)
Q Consensus 255 IvGlgEt~e~~~~~l~~l~~lg-~d~i~i~~~l~PTp~------~----~~~~~~v~~~e~~~~~~~~~~~G~~~~ 319 (351)
+-|+.++++++.++++++++++ +..+.+.+| +|.+. . +......++++++++++++++.|+...
T Consensus 171 i~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 171 VPGWTDDDDSAHRLGEFIKDMGNIEKIELLPY-HELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCcceEEEecC-CccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 5566788889999999999886 456666433 23211 0 112356788899999998888887643
No 99
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.65 E-value=3.3e-14 Score=128.98 Aligned_cols=197 Identities=14% Similarity=0.165 Sum_probs=136.4
Q ss_pred EEEeeccCCCCCCcCcccCCCCC---CCCCCchhHHHHHHHHHhCC---CcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWG---VDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~---~~~~~~eei~~~~~~~~~~G---~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
.++..+.|||++|.||..+.... ...++++++.+.++.+...+ ...|.|+||+|. +. .+.+.++++.+++
T Consensus 17 ~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPl-l~---~~~~~~li~~~~~ 92 (235)
T TIGR02493 17 RFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPL-LQ---PEFLSELFKACKE 92 (235)
T ss_pred eEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccc-cC---HHHHHHHHHHHHH
Confidence 45577899999999998764321 12367788877777655432 257999999973 33 3456799999988
Q ss_pred hCCCcEEEEeecCCCC-CHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeee
Q 018731 179 QKPDIMVECLTSDFRG-DLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML 256 (351)
Q Consensus 179 ~~p~i~i~~~~~~~~~-~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv 256 (351)
. ++.+.+.|++... ..+.++.+.+ .++.+.+++++.++ .++.++ +.++++.+++++.+++ .|+.+...+++
T Consensus 93 ~--g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~--g~~~~~v~~~i~~l~~--~g~~~~v~~vv 165 (235)
T TIGR02493 93 L--GIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLT--GVSLQPTLDFAKYLAK--RNKPIWIRYVL 165 (235)
T ss_pred C--CCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHH--CCCcHHHHHHHHHHHh--CCCcEEEEEee
Confidence 6 5556665666432 2456666666 47889999999865 566665 3488999999999999 88876655554
Q ss_pred --eCCCCHHHHHHHHHHHHhCC-CCEEeeecccCCCCCc----------ccccCCCCHHHHHHHHHHHHh
Q 018731 257 --GLGESDDDLKEAMADLRSID-VDILTLGQYLQPTPLH----------LTVKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 257 --GlgEt~e~~~~~l~~l~~lg-~d~i~i~~~l~PTp~~----------~~~~~~v~~~e~~~~~~~~~~ 313 (351)
|..++.+++.++++++.+++ +..+.+.+| .|.... ......++.++++++++++++
T Consensus 166 ~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T TIGR02493 166 VPGYTDSEEDIEALAEFVKTLPNVERVEVLPY-HQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFKE 234 (235)
T ss_pred eCCcCCCHHHHHHHHHHHHhCCCCceEEecCC-CcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHhh
Confidence 44578999999999999999 566666433 342110 112245677888888777653
No 100
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.63 E-value=5.3e-14 Score=133.27 Aligned_cols=192 Identities=16% Similarity=0.121 Sum_probs=137.6
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHHHHHHh-CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~~~~~~-~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
....+.+|++|+.+|+||......+. ..++.+++.+.++.+.+ .|+.+|+||||+|..++ .+++.++++.+++
T Consensus 88 ~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~---~~~L~~ll~~l~~ 164 (321)
T TIGR03822 88 DRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLS---PRRLGDIMARLAA 164 (321)
T ss_pred CEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCC---HHHHHHHHHHHHh
Confidence 45667789999999999997653221 23455788888888775 48999999999985444 3689999999987
Q ss_pred hCCCc---EEEEee---cCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q 018731 179 QKPDI---MVECLT---SDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS 252 (351)
Q Consensus 179 ~~p~i---~i~~~~---~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~ 252 (351)
. +.+ ++.... +....+++.++.|+++|+. +.+++++... ..-.++.+++++.+++ .|+.+..
T Consensus 165 i-~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~--------~el~~~~~~ai~~L~~--~Gi~v~~ 232 (321)
T TIGR03822 165 I-DHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHA--------RELTAEARAACARLID--AGIPMVS 232 (321)
T ss_pred C-CCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCCh--------hhcCHHHHHHHHHHHH--cCCEEEE
Confidence 4 333 333211 2234589999999999954 6777777422 1124788999999999 9998766
Q ss_pred eeee--eCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHH
Q 018731 253 SIML--GLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGE 312 (351)
Q Consensus 253 ~~Iv--GlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~ 312 (351)
..++ |.+++.+++.++++++.++|+....++ .+.|++.. ..-.++.++..++.+.++
T Consensus 233 q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~-~~~p~~g~--~~f~~~~~~~~~i~~~l~ 291 (321)
T TIGR03822 233 QSVLLRGVNDDPETLAALMRAFVECRIKPYYLH-HLDLAPGT--AHFRVTIEEGQALVRALR 291 (321)
T ss_pred EeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEE-ecCCCCCc--ccccCcHHHHHHHHHHHH
Confidence 5444 779999999999999999999888884 44675443 122467777666544443
No 101
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.62 E-value=4.3e-14 Score=122.34 Aligned_cols=203 Identities=19% Similarity=0.203 Sum_probs=155.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD 182 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~ 182 (351)
+..+..+++.|..+|.+|.-.+.+.....+.+++++...++.+.|...+.++||-.+.. .-.++.|.+.+++++++. +
T Consensus 11 ~~sISVTG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg-~VPl~kf~d~lK~lke~~-~ 88 (275)
T COG1856 11 FISISVTGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRG-KVPLWKFKDELKALKERT-G 88 (275)
T ss_pred CceEEEeccceEecChHHHHHHHHHhcccchHHHHHHHHHHHhcCceeEEEeCCcCCCC-CccHHHHHHHHHHHHHhh-C
Confidence 66777889999999999998775544455567888888888999999999999975333 234789999999999874 6
Q ss_pred cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHH-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--C
Q 018731 183 IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--G 259 (351)
Q Consensus 183 i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~-~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--g 259 (351)
+.+.+ +.++ .+++.++.++++++|.+++.+=+-++. .+.+. -..+.++.++.++.+++ .|+++.-.+++|+ |
T Consensus 89 l~ina-HvGf-vdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~-l~ksv~dyl~~l~~L~e--~~irvvpHitiGL~~g 163 (275)
T COG1856 89 LLINA-HVGF-VDESDLEKLKEELVDVVSLDFVGDNDVIKRVYK-LPKSVEDYLRSLLLLKE--NGIRVVPHITIGLDFG 163 (275)
T ss_pred eEEEE-Eeee-ccHHHHHHHHHhcCcEEEEeecCChHHHHHHHc-CCccHHHHHHHHHHHHH--cCceeceeEEEEeccC
Confidence 66655 2344 489999999999999998765444442 33333 24689999999999999 9999999999999 4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeeecccCCCCCc-ccccCCCCHHHHHHHHHHHHhc
Q 018731 260 ESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH-LTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 260 Et~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~-~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
--.-| .+.++.|.+..+|.+.+ .-+.|||.. +.....++++|..++.+++++.
T Consensus 164 ki~~e-~kaIdiL~~~~~DalVl-~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~ 217 (275)
T COG1856 164 KIHGE-FKAIDILVNYEPDALVL-VVLIPTPGTKMGNSPPPPVEEAIKVVKYARKK 217 (275)
T ss_pred cccch-HHHHHHHhcCCCCeEEE-EEEecCCchhccCCCCcCHHHHHHHHHHHHHh
Confidence 44444 46779999999998877 355687664 2345677888888888888764
No 102
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.61 E-value=1.1e-14 Score=145.19 Aligned_cols=184 Identities=22% Similarity=0.290 Sum_probs=124.4
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC---cHHHHHHHHHHHHHhC
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG---GSGHFARTVKAMKKQK 180 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~---~~~~~~~li~~ik~~~ 180 (351)
...+.+++||+++|.||..+...+....+++.++++++.+.+.|.+.+.+..++...+... ....+..+...+.+..
T Consensus 199 ~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
T COG1032 199 AFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLELIERG 278 (490)
T ss_pred EEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHHHHHHh
Confidence 4667789999999999999864212334566777777766666655543221111111000 0123333332333332
Q ss_pred C-C---cEEEEe--ecCCCCC-HHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHH-HHHHHHHhCCCCeEE
Q 018731 181 P-D---IMVECL--TSDFRGD-LRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLE-VLKHAKLSKKGLITK 251 (351)
Q Consensus 181 p-~---i~i~~~--~~~~~~~-~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~-~i~~~~~~~~Gi~v~ 251 (351)
. + +.+.+. .++. .+ ++.++.++++|..++.+|+||.++ +.+.++ ++.+.++.++ +++.+.+ .|+.+.
T Consensus 279 ~~~~~~~~~~~~~~r~d~-~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~-k~~~~~~~~~~a~~~~~~--~~~~~~ 354 (490)
T COG1032 279 LRKGCRVHISAPSLRADT-VTDEELLKLLREAGLRRVYIGIESGSEELLKKIN-KGITTEEVLEEAVKIAKE--HGLRVK 354 (490)
T ss_pred cccCceeeeeccccCchh-cCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHh-CCCChHHHHHHHHHHHHh--CCceee
Confidence 1 1 233321 2333 35 899999999999999999999876 455565 5889999995 9999999 999999
Q ss_pred EeeeeeC-CCCHHHHHHH---HHHHHhCCCC-EEeeecccCC---CCCc
Q 018731 252 SSIMLGL-GESDDDLKEA---MADLRSIDVD-ILTLGQYLQP---TPLH 292 (351)
Q Consensus 252 ~~~IvGl-gEt~e~~~~~---l~~l~~lg~d-~i~i~~~l~P---Tp~~ 292 (351)
.++|+|+ |||.+++.++ ++++++++.. .+.++ ++.| |+++
T Consensus 355 ~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~~-~~~p~p~t~~~ 402 (490)
T COG1032 355 LYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSPS-PFVPLPGTPLQ 402 (490)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEEe-eeeCCCCCchh
Confidence 9999999 9999999998 7888999986 67664 4445 7665
No 103
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.60 E-value=8.9e-14 Score=126.55 Aligned_cols=201 Identities=18% Similarity=0.235 Sum_probs=140.0
Q ss_pred eccCCCCCCcCcccCCCCCC--CC----CCchhHHHHHHHHHhC--CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 109 LGDTCTRGCRFCAVKTSRNP--AP----PDPMEPENTAKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 109 ~s~gC~~~C~FC~~~~~~~~--~~----~~~eei~~~~~~~~~~--G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
.+.||+.+|.||++..+.-. +. .+++.+++..+..++. +.-+..|-|+..+.+. .++.++++++++.
T Consensus 113 p~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lY----P~l~~lVqalk~~- 187 (414)
T COG2100 113 PSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLY----PHLVDLVQALKEH- 187 (414)
T ss_pred CCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccc----hhHHHHHHHHhcC-
Confidence 48899999999999764311 11 2345556666655543 2335677664433332 6899999999986
Q ss_pred CCcE-EEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeee
Q 018731 181 PDIM-VECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLG 257 (351)
Q Consensus 181 p~i~-i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG 257 (351)
+++. +.+.|++..++++.++.|.+||+|+|+++++++|+ +-+++.+. .++.+.+++..+.+.+ .||.+-..=+.=
T Consensus 188 ~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~--a~idvlIaPv~l 265 (414)
T COG2100 188 KGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIAN--AGIDVLIAPVWL 265 (414)
T ss_pred CCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHh--CCCCEEEeeeec
Confidence 6765 45667888889999999999999999999999988 44555432 4689999999999999 899743332222
Q ss_pred CCCCHHHHHHHHHHHHhCCCC----EEeeecccCCCCCcc-c-ccCCCCHHHHHHHHHHH-HhcCcc
Q 018731 258 LGESDDDLKEAMADLRSIDVD----ILTLGQYLQPTPLHL-T-VKEYVTPEKFDFWKAYG-ESIGFR 317 (351)
Q Consensus 258 lgEt~e~~~~~l~~l~~lg~d----~i~i~~~l~PTp~~~-~-~~~~v~~~e~~~~~~~~-~~~G~~ 317 (351)
.|-+++|+.+.+.|++++|+- .+.+..|. |-.+.. + .....+-.+|.+|.+.. .+.|.+
T Consensus 266 PG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyi-pyk~GRkp~~~k~~~fkeFYrwLrelEketg~k 331 (414)
T COG2100 266 PGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYI-PYKFGRKPVIAKVWPFKEFYRWLRELEKETGVK 331 (414)
T ss_pred CCcChHHHHHHHHHHHHhCCCCCCCCcceEEee-eecccCCccccccCcHHHHHHHHHHHHHHhCCC
Confidence 378899999999999999853 24453343 522221 1 23456778888866555 447776
No 104
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.60 E-value=2.1e-13 Score=119.80 Aligned_cols=161 Identities=13% Similarity=0.170 Sum_probs=116.9
Q ss_pred eEEEEeeccCCCCCCcCcccCCCC---CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSR---NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~---~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
..+++..|++||.+|.||..+... ....++++++.+.++.. ...++.|.|+||+|. +. .++.++++.+++.
T Consensus 16 ~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~~i~~sGGEPl-l~----~~l~~li~~~~~~ 89 (191)
T TIGR02495 16 KLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSR-QGLIDGVVITGGEPT-LQ----AGLPDFLRKVREL 89 (191)
T ss_pred CeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHh-cCCCCeEEEECCccc-Cc----HhHHHHHHHHHHC
Confidence 457778899999999999987431 11235667777776654 224788999999973 33 3488999999885
Q ss_pred CCCcEEEEeecCCCCCHHHHHHHHHcC-CCeeecchhchHHHHhhhcCCCCCHH-HHHHHHHHHHHhCCCCeEEEeeee-
Q 018731 180 KPDIMVECLTSDFRGDLRAVETLVHSG-LDVFAHNIETVKRLQRIVRDPRAGYE-QSLEVLKHAKLSKKGLITKSSIML- 256 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~~~e~l~~L~~aG-~~~i~~~ies~~~~~~~~r~~~~~~~-~~l~~i~~~~~~~~Gi~v~~~~Iv- 256 (351)
++.+.+.|++. +++.++.++++| ++.+.+++++.++.+..+++....+. +.+++++.+++ .|+.+...+++
T Consensus 90 --g~~v~i~TNg~--~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~--~gi~~~i~~~v~ 163 (191)
T TIGR02495 90 --GFEVKLDTNGS--NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLR--SGIPFELRTTVH 163 (191)
T ss_pred --CCeEEEEeCCC--CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHH--cCCCEEEEEEEe
Confidence 66666656553 678899999999 69999999876664433332334565 89999999999 88875555443
Q ss_pred -eCCCCHHHHHHHHHHHHhCC
Q 018731 257 -GLGESDDDLKEAMADLRSID 276 (351)
Q Consensus 257 -GlgEt~e~~~~~l~~l~~lg 276 (351)
|... .+++.+.++++.+.+
T Consensus 164 ~~~~~-~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 164 RGFLD-EEDLAEIATRIKENG 183 (191)
T ss_pred CCCCC-HHHHHHHHHHhccCC
Confidence 5433 678999999999888
No 105
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.55 E-value=7.5e-13 Score=126.41 Aligned_cols=196 Identities=18% Similarity=0.252 Sum_probs=149.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCC-CCCCCchhHHHHHHHHHhCC-CcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRN-PAPPDPMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~-~~~~~~eei~~~~~~~~~~G-~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
....+.+|+.||.+|.||....... ..+.+.++..+....+.+.| ...+.++||+|. +. .++.++++.+++.
T Consensus 19 ~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPl-l~----~d~~ei~~~~~~~- 92 (347)
T COG0535 19 LVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPL-LR----PDLLEIVEYARKK- 92 (347)
T ss_pred cEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcc-cc----ccHHHHHHHHhhc-
Confidence 4455568999999999999887653 34567777777888888898 888999999973 33 5788999888876
Q ss_pred CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC
Q 018731 181 PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG 259 (351)
Q Consensus 181 p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg 259 (351)
+++.+...|++..++++.++.++++|++.+.+++++.+. .++.+++....++..+++++.+++ .|+.+...+.+. +
T Consensus 93 ~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~--~g~~~~~~~~v~-~ 169 (347)
T COG0535 93 GGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKE--AGILVVINTTVT-K 169 (347)
T ss_pred CCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHH--cCCeeeEEEEEe-c
Confidence 567776666664568899999999999999999999775 456676556799999999999998 898744444442 7
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeeecccCCCCCccc-ccCCCCHHHHHHHH
Q 018731 260 ESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLT-VKEYVTPEKFDFWK 308 (351)
Q Consensus 260 Et~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~-~~~~v~~~e~~~~~ 308 (351)
.+.+++.+.++.+.++|++.+.+. .+.|+..... .....++++.+...
T Consensus 170 ~n~~~l~~~~~~~~~~g~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~ 218 (347)
T COG0535 170 INYDELPEIADLAAELGVDELNVF-PLIPVGRGEENLELDLTPEEEELLL 218 (347)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEE-EEeecccccccccccCCHHHHHHHH
Confidence 889999999999999999877775 3446444321 23456666555433
No 106
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.55 E-value=1e-12 Score=127.21 Aligned_cols=175 Identities=10% Similarity=0.103 Sum_probs=126.6
Q ss_pred EeeccCCCCCCcCcccCCCCC------CCCCCchhHHHHHHHHHhC--CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 107 MLLGDTCTRGCRFCAVKTSRN------PAPPDPMEPENTAKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~------~~~~~~eei~~~~~~~~~~--G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
...|..||.+|.||....... ...++.+.+.+.++.+.+. +...|.|+||+|...+ .+.+.++++.+++
T Consensus 9 ~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~---~~~~~~~~~~~~~ 85 (370)
T PRK13758 9 KPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAG---LEFFEELMELQRK 85 (370)
T ss_pred ecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCC---hHHHHHHHHHHHH
Confidence 344689999999999865221 1124555566666655443 4457899999974222 2456788888887
Q ss_pred hC-CCc--EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcC---CCCCHHHHHHHHHHHHHhCCCCeEEE
Q 018731 179 QK-PDI--MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRD---PRAGYEQSLEVLKHAKLSKKGLITKS 252 (351)
Q Consensus 179 ~~-p~i--~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~---~~~~~~~~l~~i~~~~~~~~Gi~v~~ 252 (351)
.. .++ .+.+.|++.+++++.++.|++.|+ .|.+++++.++.++..|. ...+++.++++++.+++ .|+.+..
T Consensus 86 ~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~--~~~~~~i 162 (370)
T PRK13758 86 HNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKK--YKVEFNI 162 (370)
T ss_pred hccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHH--hCCCceE
Confidence 53 233 346677887789999999999987 899999998776655541 24689999999999999 8887777
Q ss_pred eeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 253 SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 253 ~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
.+++. ..+.+++.+.++++.++|++.+.+...+.|
T Consensus 163 ~~~v~-~~n~~~l~~i~~~~~~~g~~~~~~~~~~~p 197 (370)
T PRK13758 163 LCVVT-SNTARHVNKIYKYFKEKDFKFLQFINCLDP 197 (370)
T ss_pred EEEec-cccccCHHHHHHHHHHcCCCeEeeeeccCc
Confidence 66665 567788999999999999998776433445
No 107
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.51 E-value=5.5e-12 Score=120.93 Aligned_cols=200 Identities=16% Similarity=0.173 Sum_probs=137.2
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHH--------HhCCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHH
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAI--------ASWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMK 177 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~--------~~~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik 177 (351)
+..+.||+.+|.||.-........++..|+.+.+..+ ...+++.|+|+| |+| |.+ .+.+.++++.++
T Consensus 125 iSsq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEP--Lln--~d~v~~~i~~l~ 200 (368)
T PRK14456 125 ISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEP--LLN--TDNVFEAVLTLS 200 (368)
T ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCcc--ccC--HHHHHHHHHHHh
Confidence 3569999999999987653223346777877665332 235789999999 997 432 356889999888
Q ss_pred HhCC--Cc---EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhhhc---CCCCCHHHHHHHHHH-HHHhCC
Q 018731 178 KQKP--DI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVR---DPRAGYEQSLEVLKH-AKLSKK 246 (351)
Q Consensus 178 ~~~p--~i---~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~~r---~~~~~~~~~l~~i~~-~~~~~~ 246 (351)
+... ++ +|++.|++ + . +.++.|.++|++ .+++++++.++ .++.+. .++.++++++++++. +.+ .
T Consensus 201 ~~~~~~~is~r~ItisT~G-l-~-~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~--~ 275 (368)
T PRK14456 201 TRKYRFSISQRKITISTVG-I-T-PEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASK--T 275 (368)
T ss_pred ccccccCcCcCeeEEECCC-C-h-HHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHh--c
Confidence 6411 12 45565554 2 3 457999999997 89999999866 454442 125689999999985 555 6
Q ss_pred CCeEE--EeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCccee
Q 018731 247 GLITK--SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (351)
Q Consensus 247 Gi~v~--~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~ 319 (351)
|..+. .-+|-|+.++.+++.+++++++++.+. +.+-+| .|.+.. .....+++++..+.+.++..|+.-.
T Consensus 276 g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~-VnlIpy-n~~~~~--~~~~ps~e~i~~F~~~L~~~Gi~vt 346 (368)
T PRK14456 276 GEPVTLVYMLLEGINDSPEDARKLIRFASRFFCK-INLIDY-NSIVNI--KFEPVCSSTRERFRDRLLDAGLQVT 346 (368)
T ss_pred CCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCe-eEEeee-ccCCCC--CCCCCCHHHHHHHHHHHHHCCCcEE
Confidence 76644 455668899999999999999998542 333223 232111 1234677888899999999888643
No 108
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.49 E-value=8.9e-12 Score=119.16 Aligned_cols=199 Identities=15% Similarity=0.138 Sum_probs=138.9
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh---C------C--CcEEEEec-cCCCCCCCCcHHHHHHHHHH
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS---W------G--VDYIVLTS-VDRDDIPDGGSGHFARTVKA 175 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~---~------G--~~~I~ltg-g~~~~l~~~~~~~~~~li~~ 175 (351)
..+.||+.+|.||+.+.......++++|+.+.+..+.. . | ++.|+|.| |+| |.+ .+.+.+.++.
T Consensus 126 SsQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEP--LlN--~d~V~~~i~~ 201 (373)
T PRK14459 126 SSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEP--LAN--YKRVVAAVRR 201 (373)
T ss_pred EecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcc--hhh--HHHHHHHHHH
Confidence 46899999999999665332345788898877765432 1 2 67899999 987 432 5788898988
Q ss_pred HHHh---CCCc---EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhhhcC--CCCCHHHHHHHHHHHH-Hh
Q 018731 176 MKKQ---KPDI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAK-LS 244 (351)
Q Consensus 176 ik~~---~p~i---~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~~~-~~ 244 (351)
+++. ..++ ++++.|.+. ...++.|.+.|++ .+.+++.+.++ .++.+.+ ++++.++.+++++... +
T Consensus 202 l~~~~~~g~gis~r~ITvST~Gl---~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~- 277 (373)
T PRK14459 202 ITAPAPEGLGISARNVTVSTVGL---VPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADA- 277 (373)
T ss_pred HhCcccccCCccCCEEEEECcCc---hhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHH-
Confidence 8862 1244 666655543 3578889998887 78899999876 4555441 2478999999976664 5
Q ss_pred CCCCeEEE--eeeeeCCCCHHHHHHHHHHHHhCC--CCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 245 KKGLITKS--SIMLGLGESDDDLKEAMADLRSID--VDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 245 ~~Gi~v~~--~~IvGlgEt~e~~~~~l~~l~~lg--~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
.|..+.. -+|-|+.++.++..+..++++.++ .-.|.+-+| .|++.. .....+.+.+..+.+.++..|+.-
T Consensus 278 -~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpy-Np~~~~--~y~~~~~~~~~~F~~~L~~~gi~~ 351 (373)
T PRK14459 278 -TGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPL-NPTPGS--KWTASPPEVEREFVRRLRAAGVPC 351 (373)
T ss_pred -hCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEcc-CCCCCC--CCcCCCHHHHHHHHHHHHHCCCeE
Confidence 6777555 445588999999999999999884 334555433 353322 123456678888889998888753
No 109
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.49 E-value=4e-12 Score=120.87 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=130.7
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHh-CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~-~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
...++.+|.||+.+|+||.......... ...+++.+.++.+.. .|+++|.|+||+|..+++ ..+.++++.+++.
T Consensus 113 ~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d---~~L~~ll~~L~~i- 188 (331)
T TIGR00238 113 NRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKD---HELEWLLKRLEEI- 188 (331)
T ss_pred CcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCH---HHHHHHHHHHHhc-
Confidence 4567889999999999999754322111 125677777777764 589999999999844442 4588888888874
Q ss_pred CC---cEEEEeecCC---CCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE--E
Q 018731 181 PD---IMVECLTSDF---RGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK--S 252 (351)
Q Consensus 181 p~---i~i~~~~~~~---~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~--~ 252 (351)
+. +++...++.. .++++.++.|+++|+..+.++.....+ ...++..++++.+++ +|+.+. +
T Consensus 189 ~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~---------Ei~~~~~~ai~~L~~--aGi~v~~qt 257 (331)
T TIGR00238 189 PHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCN---------EITEEFAEAMKKLRT--VNVTLLNQS 257 (331)
T ss_pred CCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChH---------hCCHHHHHHHHHHHH--cCCEEEeec
Confidence 33 3444433332 358999999999999887665433221 123677899999999 899754 4
Q ss_pred eeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHH
Q 018731 253 SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYG 311 (351)
Q Consensus 253 ~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~ 311 (351)
.++-|..++.+++.++.+.+.++|+.-..++ .+.|+... ..-.++.++..++-+.+
T Consensus 258 vLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~-~~~~~~g~--~~f~~~~~~~~~i~~~l 313 (331)
T TIGR00238 258 VLLRGVNDRAQILAKLSIALFKVGIIPYYLH-YLDKVQGA--KHFLVPDAEAAQIVKEL 313 (331)
T ss_pred ceECCcCCCHHHHHHHHHHHhhcCeecCeec-CcCCCCCc--ccccCCHHHHHHHHHHH
Confidence 4555778899999999999999998776664 34565443 12346666666554443
No 110
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.49 E-value=3.5e-12 Score=120.66 Aligned_cols=190 Identities=15% Similarity=0.189 Sum_probs=129.8
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCC-CCCCchhHHHHHHHHHh-CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK- 180 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei~~~~~~~~~-~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~- 180 (351)
+..+.++.+|+.+|+||........ ...+.+++.+.++.+.+ .|++.|+||||+|-..++ ..+.++++.+....
T Consensus 97 r~l~~~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d---~~L~~ll~~l~~i~~ 173 (321)
T TIGR03821 97 RVLLIVTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAKD---HRLDWLLNLLEQIPH 173 (321)
T ss_pred EEEEEeCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCCc---hHHHHHHHHHHhCCC
Confidence 3556799999999999986543211 13345667776776664 489999999999743332 34777777766531
Q ss_pred -CCcEEEE----eecCCCCCHHHHHHHHHcCCCeee-cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee
Q 018731 181 -PDIMVEC----LTSDFRGDLRAVETLVHSGLDVFA-HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (351)
Q Consensus 181 -p~i~i~~----~~~~~~~~~e~l~~L~~aG~~~i~-~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (351)
..+++.. ..|+ .++++.++.|+++|+..+. ++++..++.+ ++..++++.+++ .|+.+....
T Consensus 174 ~~~iri~tr~~~~~p~-rit~el~~~L~~~~~~~~~~~h~dh~~Ei~----------d~~~~ai~~L~~--~Gi~v~~qt 240 (321)
T TIGR03821 174 LKRLRIHTRLPVVIPD-RITSGLCDLLANSRLQTVLVVHINHANEID----------AEVADALAKLRN--AGITLLNQS 240 (321)
T ss_pred CcEEEEecCcceeeHH-HhhHHHHHHHHhcCCcEEEEeeCCChHhCc----------HHHHHHHHHHHH--cCCEEEecc
Confidence 1234432 2233 4588999999999988764 4666554432 346679999999 999865544
Q ss_pred ee--eCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHH
Q 018731 255 ML--GLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGE 312 (351)
Q Consensus 255 Iv--GlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~ 312 (351)
++ |+.++.+++.++++.+.++|+.-..++ .+.|++.. ..-.+++++..++-+.++
T Consensus 241 vllkgiNDn~~~l~~L~~~l~~~gv~pyyl~-~~~p~gg~--~~f~v~~~~~~~i~~~l~ 297 (321)
T TIGR03821 241 VLLRGVNDNADTLAALSERLFDAGVLPYYLH-LLDKVQGA--AHFDVDDERARALMAELL 297 (321)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHcCCeeCccc-ccCCCCCc--ccccCCHHHHHHHHHHHH
Confidence 44 668999999999999999999877774 45676643 124577777776555443
No 111
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.48 E-value=8.7e-12 Score=119.42 Aligned_cols=199 Identities=14% Similarity=0.154 Sum_probs=134.4
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHH----h--CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA----S--WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~----~--~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
..+.||+.+|.||..+.......++++|+.+++.... . .|+..|+++| |+| +.+ .+.+.++++.+++..
T Consensus 114 SsqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEP--Lln--~~~v~~~l~~l~~~~ 189 (356)
T PRK14455 114 TTQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEP--FDN--YDNVMDFLRIINDDK 189 (356)
T ss_pred ECCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccc--cCC--HHHHHHHHHHHhccc
Confidence 4578999999999988654344578888887666432 1 3578899988 886 332 578899999988631
Q ss_pred CCc-----EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCeEE
Q 018731 181 PDI-----MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 181 p~i-----~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (351)
++ ++.+.|++.. +.+..+.+.++. .+.+++.+.++ .++.+. .++++.++++++++.+.+. .|..+.
T Consensus 190 -g~~~s~r~itvsT~G~~---~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~-~~~~v~ 264 (356)
T PRK14455 190 -GLAIGARHITVSTSGIA---PKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEK-TNRRVT 264 (356)
T ss_pred -CcccCCCceEEEecCch---HhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHh-cCCeEE
Confidence 33 5555555432 356667777654 25578888866 454322 1256889999999977541 344544
Q ss_pred E--eeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCccee
Q 018731 252 S--SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (351)
Q Consensus 252 ~--~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~ 319 (351)
. -+|-|++++.+++.++.++++.++. .|.+-+| .|++.. .....+++.+..+.+.+...|+...
T Consensus 265 iey~lI~gvNDs~ed~~~La~ll~~l~~-~VnLIPy-np~~~~--ky~~ps~e~l~~f~~~L~~~gi~v~ 330 (356)
T PRK14455 265 FEYILLGGVNDQVEHAEELADLLKGIKC-HVNLIPV-NPVPER--DYVRTPKEDIFAFEDTLKKNGVNCT 330 (356)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCC-cEEEEec-CcCCCC--CCcCCCHHHHHHHHHHHHHCCCcEE
Confidence 4 5555779999999999999999874 4555333 343322 1234567788888888988888643
No 112
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.1e-12 Score=116.64 Aligned_cols=207 Identities=15% Similarity=0.201 Sum_probs=145.9
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC-CCCCchhH-HHHHHH-HH-hCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEP-ENTAKA-IA-SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei-~~~~~~-~~-~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
...+...+.|||++|.||..+..... .....+++ .+++.. .. ..+...|.+|||+|. +. .+.+.++++..|+
T Consensus 35 ~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SGGEP~-~q---~e~~~~~~~~ake 110 (260)
T COG1180 35 SIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSGGEPT-LQ---AEFALDLLRAAKE 110 (260)
T ss_pred cEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEECCcch-hh---HHHHHHHHHHHHH
Confidence 36677789999999999998874421 12222222 122222 22 237889999999974 32 5889999999999
Q ss_pred hCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe--EEEeee
Q 018731 179 QKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI--TKSSIM 255 (351)
Q Consensus 179 ~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~--v~~~~I 255 (351)
. ++.+.+-|+++ .+++.++.|.+. +|.+.+.+...++ .++.+. +.+.+.+++.++.+.+ .|+. +.+-+|
T Consensus 111 ~--Gl~~~l~TnG~-~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~t--g~~~~~vl~~~~~l~~--~g~~ve~r~lvi 182 (260)
T COG1180 111 R--GLHVALDTNGF-LPPEALEELLPL-LDAVLLDLKAFDDELYRKLT--GADNEPVLENLELLAD--LGVHVEIRTLVI 182 (260)
T ss_pred C--CCcEEEEcCCC-CCHHHHHHHHhh-cCeEEEeeccCChHHHHHHh--CCCcHHHHHHHHHHHc--CCCeEEEEEEEE
Confidence 7 77776666666 488888899988 9999999888755 577776 5566999999999999 7886 455666
Q ss_pred eeCCCCHHHHHHHHHHHHhCCCC-EEeeecccCCCCCcc-cccCCCCHHHHHHHHHHHHhcCcceeccCcc
Q 018731 256 LGLGESDDDLKEAMADLRSIDVD-ILTLGQYLQPTPLHL-TVKEYVTPEKFDFWKAYGESIGFRYVASGPL 324 (351)
Q Consensus 256 vGlgEt~e~~~~~l~~l~~lg~d-~i~i~~~l~PTp~~~-~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~ 324 (351)
-|++++.+++.+.++++.+++.. -+.+.+| .|.+. ........++++++.+.+.+.|.++++.++.
T Consensus 183 Pg~~d~~e~i~~i~~~i~~~~~~~p~~~l~f---hp~~~~~~~p~~~~~~le~~~~~a~~~~~~~v~~~~~ 250 (260)
T COG1180 183 PGYNDDEEEIRELAEFIADLGPEIPIHLLRF---HPDYKLKDLPPTPVETLEEAKKLAKEEGLKFVYIGNV 250 (260)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCcccEEEecc---ccCccccccCCCcHHHHHHhHhhhHHHHHHhHhhhcc
Confidence 77789999999999999986543 2344222 33332 1223445567777888888777777666543
No 113
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.47 E-value=4.6e-12 Score=124.28 Aligned_cols=171 Identities=11% Similarity=0.130 Sum_probs=125.5
Q ss_pred eccCCCCCCcCcccCCCC-----CC-CCCCchhHHHHHHHHHh-CCCcE--EEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 109 LGDTCTRGCRFCAVKTSR-----NP-APPDPMEPENTAKAIAS-WGVDY--IVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 109 ~s~gC~~~C~FC~~~~~~-----~~-~~~~~eei~~~~~~~~~-~G~~~--I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
++..||.+|.||...... .+ ..++.+.+.+.++++.+ .+... +.++||||. +.. ...+.++++.+++.
T Consensus 20 ~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPl-L~~--~~~~~~~~~~~~~~ 96 (412)
T PRK13745 20 VGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETL-MRP--LSFYKKALELQKKY 96 (412)
T ss_pred cCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccC-CCc--HHHHHHHHHHHHHH
Confidence 457999999999985421 11 23677778888887765 35555 556899974 331 23455666655543
Q ss_pred C--CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcC---CCCCHHHHHHHHHHHHHhCCCCeEEEee
Q 018731 180 K--PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRD---PRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (351)
Q Consensus 180 ~--p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~---~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (351)
. .++.+.+.|++.+++++.++.|+++|+ .|.+++++.++.++..|. ...++++++++++.+++ .|+.+.+..
T Consensus 97 ~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~--~gi~~~i~~ 173 (412)
T PRK13745 97 ARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKK--HGVEWNAMA 173 (412)
T ss_pred cCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHH--cCCCEEEEE
Confidence 2 245666778888889999999999997 899999998766655541 13599999999999999 898876655
Q ss_pred eeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 255 MLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 255 IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
++. .++.+++.+.+++++++|++.+.+.+++
T Consensus 174 vv~-~~n~~~~~e~~~~~~~lg~~~~~~~p~~ 204 (412)
T PRK13745 174 VVN-DFNADYPLDFYHFFKELDCHYIQFAPIV 204 (412)
T ss_pred EEc-CCccccHHHHHHHHHHcCCCeEEEEecc
Confidence 543 7888889999999999999998885444
No 114
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.47 E-value=1.7e-11 Score=117.24 Aligned_cols=198 Identities=17% Similarity=0.171 Sum_probs=135.6
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHH---hCCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHh---C
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA---SWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ---K 180 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~---~~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~---~ 180 (351)
..+.||+.+|.||..........++.+|+.+.+..+. ..++..|+|+| |+| +.+ .+.+.++++.+++. .
T Consensus 106 ssq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEP--Lln--~d~v~~~i~~l~~~~~~~ 181 (343)
T PRK14469 106 STQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEP--LLN--YENVIKSIKILNHKKMKN 181 (343)
T ss_pred EecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhccCCcCeEEEEccChh--hhh--HHHHHHHHHHHhchhccc
Confidence 4679999999999865432223466788877664432 24688999999 997 332 46678888887642 1
Q ss_pred CCc-EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCeEE--Ee
Q 018731 181 PDI-MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLITK--SS 253 (351)
Q Consensus 181 p~i-~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~Gi~v~--~~ 253 (351)
.+. .+++.|++ ..+.++.|.+.|++ .+.+++++.++ .++.+. .++++.++++++++.+.+. .+..+. .-
T Consensus 182 ~g~~~itisTnG---~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~-~~~~v~i~yv 257 (343)
T PRK14469 182 IGIRRITISTVG---IPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKK-TGNRVTIEYI 257 (343)
T ss_pred CCCCeEEEECCC---ChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHH-hCCeEEEEEE
Confidence 122 56664544 36788999999999 69999999876 454432 1257999999999876541 344444 44
Q ss_pred eeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 254 IMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 254 ~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
+|-|+.++.+++.+..++++.+++. |.+-+| .|.+. .....+.+++.++.+.++..|+..
T Consensus 258 lI~g~NDs~ed~~~La~llk~~~~~-VnLIpy-np~~~---~~~~ps~e~l~~f~~~l~~~gi~v 317 (343)
T PRK14469 258 LIKGFNDEIEDAKKLAELLKGLKVF-VNLIPV-NPTVP---GLEKPSRERIERFKEILLKNGIEA 317 (343)
T ss_pred EECCCCCCHHHHHHHHHHHhccCcE-EEEEec-CCCCc---cCCCCCHHHHHHHHHHHHHCCCeE
Confidence 5667899999999999999988753 444333 24222 124456788888988888888753
No 115
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.45 E-value=1.8e-11 Score=116.66 Aligned_cols=206 Identities=18% Similarity=0.198 Sum_probs=138.6
Q ss_pred eeeEEEEeeccCCCC-CCcCcccC------CCCCCC----------CCCc-hhHHHHHHHHHhCCCc----EEEEeccCC
Q 018731 101 IATATIMLLGDTCTR-GCRFCAVK------TSRNPA----------PPDP-MEPENTAKAIASWGVD----YIVLTSVDR 158 (351)
Q Consensus 101 ~~~~~~i~~s~gC~~-~C~FC~~~------~~~~~~----------~~~~-eei~~~~~~~~~~G~~----~I~ltgg~~ 158 (351)
+...+.|.--.+||+ +|.||... .+.... ..+| .++..-++++...|-. ++.|.||+-
T Consensus 65 vaVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTF 144 (515)
T COG1243 65 VAVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTF 144 (515)
T ss_pred ceEEEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccc
Confidence 445666667889997 99999765 111110 1122 3555666677777743 567788886
Q ss_pred CCCCCCcHHHHHHHH-HHHH----------------Hh-CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-
Q 018731 159 DDIPDGGSGHFARTV-KAMK----------------KQ-KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR- 219 (351)
Q Consensus 159 ~~l~~~~~~~~~~li-~~ik----------------~~-~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~- 219 (351)
+.++..-.++|...+ +++- .. .-+++|+. .||.. +++.++.|++.|+++|-+|+||+.+
T Consensus 145 ta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiET-RPD~~-~ee~ld~mlkyG~TrVELGVQSiyd~ 222 (515)
T COG1243 145 TALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIET-RPDYI-DEEHLDQMLKYGVTRVELGVQSIYDD 222 (515)
T ss_pred cCCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEec-Ccccc-CHHHHHHHHhcCCcEEEEeeeeHHHH
Confidence 656532234444332 2222 00 01233433 46775 8999999999999999999999755
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCC---CCEEeeeccc-CC-CCCcc
Q 018731 220 LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSID---VDILTLGQYL-QP-TPLHL 293 (351)
Q Consensus 220 ~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg---~d~i~i~~~l-~P-Tp~~~ 293 (351)
..+... ++|+++++.++-+.+++ +|++++..+|.|+ |-+.|-=.++++.+-+.+ +|.+-+++.| .. |+++.
T Consensus 223 Vl~~~~-RGHtvedv~~a~rLlKd--~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~ 299 (515)
T COG1243 223 VLERTK-RGHTVEDVVEATRLLKD--AGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYE 299 (515)
T ss_pred HHHHhc-CCccHHHHHHHHHHHHh--cCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHH
Confidence 554443 59999999999999999 9999999999999 888776667777776666 9999998766 23 77762
Q ss_pred --c--ccCCCCHHHHHHHHHHH
Q 018731 294 --T--VKEYVTPEKFDFWKAYG 311 (351)
Q Consensus 294 --~--~~~~v~~~e~~~~~~~~ 311 (351)
. .-...+.++..++...+
T Consensus 300 mwk~G~Ykpy~~EEaVeli~~i 321 (515)
T COG1243 300 MWKRGLYKPYTTEEAVELIVEI 321 (515)
T ss_pred HHHcCCCCCCCHHHHHHHHHHH
Confidence 1 12345666666544433
No 116
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.45 E-value=1.8e-11 Score=116.68 Aligned_cols=200 Identities=14% Similarity=0.134 Sum_probs=134.1
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHhC------CCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW------GVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~~------G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
+..+.||+.+|.||..........++++|+.+.+..+... .++.|+|+| |+| +.+ .+.+.+.++.+...
T Consensus 97 vSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEP--lln--~~~v~~~i~~l~~~ 172 (343)
T PRK14468 97 VSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEP--LLN--YENVLKAARIMLHP 172 (343)
T ss_pred EEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCcc--ccC--HHHHHHHHHHhccc
Confidence 4568999999999986553223457788988777654332 256899998 887 332 56777777766422
Q ss_pred -CCCc---EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCeEE
Q 018731 180 -KPDI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 180 -~p~i---~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (351)
..++ .+++.|++ ..+.++.|.++|++ .+.+++.+.++ .++.+. +++.+.++.+++++...+. .+..+.
T Consensus 173 ~g~~l~~r~itvST~G---~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~-~~~~V~ 248 (343)
T PRK14468 173 QALAMSPRRVTLSTVG---IPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAV-TGRRVT 248 (343)
T ss_pred ccccccCceEEEECCC---ChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHh-cCCeEE
Confidence 1121 35554544 34678889998887 58889988876 454443 1245889999999755442 455544
Q ss_pred --EeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 252 --SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 252 --~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
.-+|=|+.++.|++.+..++++++.+ .+.+-+| .|.... .....+.+++..+++.++..|+.-
T Consensus 249 ieyvLI~GvNDs~e~~~~L~~ll~~~~~-~VnLIPy-np~~~~--~~~~ps~e~i~~f~~~L~~~Gi~v 313 (343)
T PRK14468 249 LEYTMLKGVNDHLWQAELLADLLRGLVS-HVNLIPF-NPWEGS--PFQSSPRAQILAFADVLERRGVPV 313 (343)
T ss_pred EEEEEeCCCcCCHHHHHHHHHHHhcCCc-EEEEEcC-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCeE
Confidence 45555889999999999999999864 3444333 242221 234567888888998888888753
No 117
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.45 E-value=1.4e-11 Score=116.61 Aligned_cols=197 Identities=16% Similarity=0.184 Sum_probs=133.4
Q ss_pred eccCCCCCCcCcccCCCCC-------CCCCCchhHHHHHHHHHh---C---C--------------CcEEEEe-ccCCCC
Q 018731 109 LGDTCTRGCRFCAVKTSRN-------PAPPDPMEPENTAKAIAS---W---G--------------VDYIVLT-SVDRDD 160 (351)
Q Consensus 109 ~s~gC~~~C~FC~~~~~~~-------~~~~~~eei~~~~~~~~~---~---G--------------~~~I~lt-gg~~~~ 160 (351)
...||+.+|.||..+.... ....+++++.+.+..... . | .+++.|+ +|+|.
T Consensus 64 ~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPl- 142 (322)
T PRK13762 64 VVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPT- 142 (322)
T ss_pred hhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCcccc-
Confidence 3567999999998875432 112456777665544311 1 3 3468887 67763
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCC--CCCHHHHHHH
Q 018731 161 IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEV 237 (351)
Q Consensus 161 l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~--~~~~~~~l~~ 237 (351)
+. +++.++++.+++. ++.+.+.|++. .++.++.| +++++.+.+++++.++ .++.++++ ..+++.+++.
T Consensus 143 L~----p~l~eli~~~k~~--Gi~~~L~TNG~--~~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~ 213 (322)
T PRK13762 143 LY----PYLPELIEEFHKR--GFTTFLVTNGT--RPDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILET 213 (322)
T ss_pred ch----hhHHHHHHHHHHc--CCCEEEECCCC--CHHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHH
Confidence 42 5799999999987 66666666654 36888888 7899999999999865 56666522 4589999999
Q ss_pred HHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCc---ccccCCCCHHHHHHHHHHHHh-
Q 018731 238 LKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH---LTVKEYVTPEKFDFWKAYGES- 313 (351)
Q Consensus 238 i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~---~~~~~~v~~~e~~~~~~~~~~- 313 (351)
++.+++ .|..+...+.+=-|.|..+..+.++++++++++.+.+..|. |.... ......++.+++..+.+.+.+
T Consensus 214 L~~l~~--~~~~~~ir~tlv~g~Nd~e~~~~a~l~~~~~~~~Iel~~y~-~~G~~k~~l~~~~~p~~eev~~~~~~l~~~ 290 (322)
T PRK13762 214 LELLPS--KKTRTVIRITLVKGYNMHDPEGFAKLIERANPDFVEVKAYM-HVGYSRNRLTRDNMPSHEEVREFAKELAEY 290 (322)
T ss_pred HHHHHh--CCCCEEEEEEEECCcCccHHHHHHHHHHHcCCCEEEEECCe-ECCCccccccccCCcCHHHHHHHHHHHHHh
Confidence 999998 77765444333224555555588999999999999885453 42111 112345788888887776655
Q ss_pred cCcce
Q 018731 314 IGFRY 318 (351)
Q Consensus 314 ~G~~~ 318 (351)
.|+..
T Consensus 291 ~~~~i 295 (322)
T PRK13762 291 TGYEI 295 (322)
T ss_pred cCCeE
Confidence 47653
No 118
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.45 E-value=2.3e-11 Score=116.39 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=135.1
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHH---HH-hC--C---CcEEEEec-cCCCCCCCCcHHHHHHHHHHHH
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKA---IA-SW--G---VDYIVLTS-VDRDDIPDGGSGHFARTVKAMK 177 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~---~~-~~--G---~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik 177 (351)
..+.||+.+|.||..........++++|+.+++.. .. .. | ++.|+|+| |+| +.+ .+.+.+.++.++
T Consensus 107 Ssq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEP--Lln--~~~v~~~l~~l~ 182 (354)
T PRK14460 107 SCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEP--LLN--LDEVMRSLRTLN 182 (354)
T ss_pred eCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcc--cCC--HHHHHHHHHHHh
Confidence 45889999999998654322345788898877742 22 22 3 67888988 886 332 567888888887
Q ss_pred HhCCCc-----EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCC--CCCHHHHHHHHHHH-HHhCCCC
Q 018731 178 KQKPDI-----MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVLKHA-KLSKKGL 248 (351)
Q Consensus 178 ~~~p~i-----~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~--~~~~~~~l~~i~~~-~~~~~Gi 248 (351)
+.. ++ ++.+.|++. .+.++.|.++|+..+.+++++.++ .++.+.+. ..+.++.+++++.. .+ .|-
T Consensus 183 ~~~-Gl~~~~r~itvsT~G~---~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~--~~~ 256 (354)
T PRK14460 183 NEK-GLNFSPRRITVSTCGI---EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLK--TRE 256 (354)
T ss_pred hhh-ccCCCCCeEEEECCCC---hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHh--cCC
Confidence 531 22 466655543 678899999999889999999876 45444311 35888899888754 33 344
Q ss_pred e--EEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 249 I--TKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 249 ~--v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
. +..-+|-|++++.+++.+++++++.++. .|.+-+| .|.+.. .....+++++..+.++++..|+.-
T Consensus 257 ~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~-~VnLIpy-n~~~g~--~y~~p~~e~v~~f~~~l~~~Gi~v 324 (354)
T PRK14460 257 RVTFEYLLLGGVNDSLEHARELVRLLSRTKC-KLNLIVY-NPAEGL--PYSAPTEERILAFEKYLWSKGITA 324 (354)
T ss_pred eEEEEEEEECCCCCCHHHHHHHHHHHhcCCC-cEEEEcC-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCeE
Confidence 4 4556666889999999999999999875 3444333 243221 124567888899999988888753
No 119
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.43 E-value=4.1e-11 Score=114.45 Aligned_cols=199 Identities=18% Similarity=0.148 Sum_probs=130.7
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHH-hCCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhCCCc-
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA-SWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPDI- 183 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~-~~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~p~i- 183 (351)
+..+.||+.+|.||.-........++++|+.+.+..+. ..+++.|+|+| |+| +.+ ++.+.+.++.+++. .++
T Consensus 107 vSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GEP--l~n--~~~vi~~l~~l~~~-~gl~ 181 (349)
T PRK14463 107 ISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGEP--LAN--LDNVIPALQILTDP-DGLQ 181 (349)
T ss_pred EEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEEEEecCCcc--hhc--HHHHHHHHHHhhcc-cccC
Confidence 45799999999999755422234467888887776654 35789999999 886 332 56777777777642 133
Q ss_pred ----EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCeEEE--ee
Q 018731 184 ----MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLITKS--SI 254 (351)
Q Consensus 184 ----~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~ 254 (351)
++.+.|++. .+ .+..+.+...-.+.+++++.++ .++.+- .++.+.++.+++++..... .+-.+.. -+
T Consensus 182 ~s~r~itVsTnGl--~~-~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~-~~~~v~ieyvL 257 (349)
T PRK14463 182 FSTRKVTVSTSGL--VP-EMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLP-GRRKITIEYVM 257 (349)
T ss_pred cCCceEEEECCCc--hH-HHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHh-cCCeEEEEEEE
Confidence 565555543 33 4444554432245578888865 554431 1357889999988776541 3344544 55
Q ss_pred eeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 255 MLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 255 IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
|-|++++.+++.++.+++++++. .+.+-+| .|.+.. .....+.+++..+++.++..|+.-
T Consensus 258 I~GvNDs~e~~~~L~~ll~~l~~-~vnlIPy-n~~~~~--~~~~ps~e~i~~f~~~L~~~gi~v 317 (349)
T PRK14463 258 IRGLNDSLEDAKRLVRLLSDIPS-KVNLIPF-NEHEGC--DFRSPTQEAIDRFHKYLLDKHVTV 317 (349)
T ss_pred eCCCCCCHHHHHHHHHHHhccCc-eEEEEec-CCCCCC--CCCCCCHHHHHHHHHHHHHCCceE
Confidence 55779999999999999999876 4555333 343221 234567788999999998888753
No 120
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.42 E-value=5.1e-11 Score=113.47 Aligned_cols=198 Identities=14% Similarity=0.203 Sum_probs=135.4
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh---CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhCCC
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS---WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPD 182 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~---~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~p~ 182 (351)
+..+.||+.+|.||..........++++|+.+++..+.. .++..|+|+| |+| +.+ .+.+.+.++.+++. .+
T Consensus 105 vSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEP--lln--~~~v~~~i~~l~~~-~~ 179 (345)
T PRK14457 105 VSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEP--LLN--IDEVLAAIRCLNQD-LG 179 (345)
T ss_pred EeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCcc--ccC--HHHHHHHHHHHhcc-cC
Confidence 345789999999998765332234778888877766543 3578999999 987 332 56777888887653 24
Q ss_pred c---EEEEeecCCCCCHHHHHHHHHcCC------C-eeecchhchHH-HHhhhcC--CCCCHHHHHHHHHH-HHHhCCCC
Q 018731 183 I---MVECLTSDFRGDLRAVETLVHSGL------D-VFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKH-AKLSKKGL 248 (351)
Q Consensus 183 i---~i~~~~~~~~~~~e~l~~L~~aG~------~-~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~-~~~~~~Gi 248 (351)
+ ++++.|.+ ..+.++.|.+.++ + .+.+++.+.++ .++.+.+ +++..++.+++++. +.+ .|-
T Consensus 180 i~~r~itvST~G---~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~--~gr 254 (345)
T PRK14457 180 IGQRRITVSTVG---VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAI--TGR 254 (345)
T ss_pred CccCceEEECCC---chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHH--hCC
Confidence 4 56665543 3456888888762 3 36778888765 4544431 24678888877755 455 564
Q ss_pred --eEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 249 --ITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 249 --~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
.+..-+|-|+.++.|++.++.++++.+++ .|.+-+| .|.+.. .....+.+++..+.+.++..|+.-
T Consensus 255 ~I~iey~LIpGvNDs~e~a~~La~~l~~l~~-~VnLIPy-np~~~~--~~~~ps~e~i~~f~~~L~~~Gi~v 322 (345)
T PRK14457 255 RVSFEYILLGGVNDLPEHAEELANLLRGFQS-HVNLIPY-NPIDEV--EFQRPSPKRIQAFQRVLEQRGVAV 322 (345)
T ss_pred EEEEEEEEECCcCCCHHHHHHHHHHHhcCCC-eEEEecC-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCeE
Confidence 45666777999999999999999999875 4555333 343322 124567888889999888888853
No 121
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.42 E-value=4.3e-11 Score=114.64 Aligned_cols=199 Identities=16% Similarity=0.207 Sum_probs=134.8
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh------CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHh-
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS------WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ- 179 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~------~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~- 179 (351)
..+.||+.+|.||+.........++.+|+.+.+..+.. .++..|+|.| |+| +.+ .+.+.++++.+++.
T Consensus 110 SsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEP--Lln--~d~v~~~l~~l~~~~ 185 (355)
T TIGR00048 110 SSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEP--LLN--LNEVVKAMEIMNDDF 185 (355)
T ss_pred ecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCch--hhC--HHHHHHHHHHhhccc
Confidence 45789999999999765432334677888776554321 2477899998 886 332 57788888888753
Q ss_pred CCCc---EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhhhcC--CCCCHHHHHHHHHHH-HHhCCCCeEE
Q 018731 180 KPDI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHA-KLSKKGLITK 251 (351)
Q Consensus 180 ~p~i---~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~~-~~~~~Gi~v~ 251 (351)
..++ ++.+.|++. .+.++.|.+.+++ .+.+++.+.++ .++.+.+ +++++++.+++++.. ++ .|.++.
T Consensus 186 g~~i~~~~itisT~G~---~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~--~g~~Vt 260 (355)
T TIGR00048 186 GLGISKRRITISTSGV---VPKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNK--TGRRVT 260 (355)
T ss_pred ccCcCCCeEEEECCCc---hHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHH--hCCEEE
Confidence 2234 566656553 2678888888887 46788888765 5544321 245789999888754 55 566644
Q ss_pred --EeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCccee
Q 018731 252 --SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (351)
Q Consensus 252 --~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~ 319 (351)
.-+|-|+.++.+++.+..++++.+++ .|.+-+| .|.+.. .....+++++.++.+.++..|+.-.
T Consensus 261 ieyvLI~GvNDs~e~a~~La~llk~l~~-~VnLIPy-np~~~~--~~~~ps~e~i~~f~~~L~~~gi~v~ 326 (355)
T TIGR00048 261 FEYVLLDGVNDQVEHAEELAELLKGTKC-KVNLIPW-NPFPEA--DYERPSNEQIDRFAKTLMSYGFTVT 326 (355)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCCC-ceEEEec-ccCCCC--CCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 45556889999999999999999875 3444233 343332 1234677889899988888888643
No 122
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.41 E-value=7.9e-11 Score=114.15 Aligned_cols=200 Identities=17% Similarity=0.147 Sum_probs=130.2
Q ss_pred CCcCcccCCCC-CCCCCCchhHHHHHHHHHh-C--CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ec
Q 018731 116 GCRFCAVKTSR-NPAPPDPMEPENTAKAIAS-W--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TS 190 (351)
Q Consensus 116 ~C~FC~~~~~~-~~~~~~~eei~~~~~~~~~-~--G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~ 190 (351)
.|.||...... .....+++++.+++..... . ....|.++||+++.+. +.+.++++.+++. ++++.+. |+
T Consensus 38 ~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~----~~l~eLl~~lk~~--gi~taI~~Tn 111 (404)
T TIGR03278 38 GCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY----PELEELTKGLSDL--GLPIHLGYTS 111 (404)
T ss_pred CCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC----HHHHHHHHHHHhC--CCCEEEeCCC
Confidence 66666433211 1122456788777776443 2 4578999988765444 7899999999986 4554442 55
Q ss_pred C-CCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE--EEeeeeeCCCCHHHHH
Q 018731 191 D-FRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT--KSSIMLGLGESDDDLK 266 (351)
Q Consensus 191 ~-~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v--~~~~IvGlgEt~e~~~ 266 (351)
+ +..+++.++.++++|+|.+++++.+.++ .++.+++ ....+++++.++.+.+ . +.+ ..-++-|+.++.+. .
T Consensus 112 G~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G-~~~a~~ILe~L~~L~e--~-~~v~~~ivlIPGiND~eel-~ 186 (404)
T TIGR03278 112 GKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMK-DPTPEASLQCLRRFCE--S-CEVHAASVIIPGVNDGDVL-W 186 (404)
T ss_pred CcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhC-CCCHHHHHHHHHHHHh--c-CCEEEEEEEeCCccCcHHH-H
Confidence 4 3458999999999999999999999876 5665552 2355899999999987 3 444 44445566555554 6
Q ss_pred HHHHHHHhCCCCEEeeecccCCCC-------Ccccc--cCCCCHHHHHHH-HHHHHhcCcceeccCcccccc
Q 018731 267 EAMADLRSIDVDILTLGQYLQPTP-------LHLTV--KEYVTPEKFDFW-KAYGESIGFRYVASGPLVRSS 328 (351)
Q Consensus 267 ~~l~~l~~lg~d~i~i~~~l~PTp-------~~~~~--~~~v~~~e~~~~-~~~~~~~G~~~~~~~~~~r~~ 328 (351)
++++++.++++..+.+.+| +++. +.... ....+.+++..+ ++..++.|++.. ..||+..+
T Consensus 187 ~ti~~L~~lg~~~V~L~~y-~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~~i~~~-g~~~~~~~ 256 (404)
T TIGR03278 187 KTCADLESWGAKALILMRF-ANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEFPIRVT-GTPLCDPE 256 (404)
T ss_pred HHHHHHHHCCCCEEEEEec-ccccccccccCCcCcccCCCCCCHHHHHHHHHHHHHHhCCccc-CCcccccC
Confidence 9999999999998888644 3321 11111 123455666665 666666665533 33555544
No 123
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.41 E-value=6.7e-11 Score=112.25 Aligned_cols=197 Identities=11% Similarity=0.062 Sum_probs=134.4
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh---CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHh---
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS---WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ--- 179 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~---~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~--- 179 (351)
+..+.||+.+|.||..........+++.|+.+.+..+.+ ..++.|+|+| |+|. +. .+.+.++++.++..
T Consensus 101 vSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEPl-lN---~d~v~~~i~~l~~~~~~ 176 (336)
T PRK14470 101 LSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQGEPF-LN---YDEVLRAAYALCDPAGA 176 (336)
T ss_pred EeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEecCccc-cC---HHHHHHHHHHHhCcccc
Confidence 456889999999999876332234566777666654433 2578999999 9973 32 46788888888753
Q ss_pred -CCCcEEEEeecCCCCCHHHHHHHHHcCC-CeeecchhchHH-HH-hhhcC-CCCCHHHHHHHHHHHHHhCCCCe--EEE
Q 018731 180 -KPDIMVECLTSDFRGDLRAVETLVHSGL-DVFAHNIETVKR-LQ-RIVRD-PRAGYEQSLEVLKHAKLSKKGLI--TKS 252 (351)
Q Consensus 180 -~p~i~i~~~~~~~~~~~e~l~~L~~aG~-~~i~~~ies~~~-~~-~~~r~-~~~~~~~~l~~i~~~~~~~~Gi~--v~~ 252 (351)
..+.+|++.|++. . +.++.+.+.|. +.+.+++.+.++ .+ ++++. ++.+.++.+++++...+ .+-. +..
T Consensus 177 ~~~~~~ItVsTnG~--~-p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~--~~rri~iey 251 (336)
T PRK14470 177 RIDGRRISISTAGV--V-PMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAA--LRGRVTLEY 251 (336)
T ss_pred ccCCCceEEEecCC--h-HHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHH--hCCCeEEEE
Confidence 1245677766653 3 45666667665 779999999766 45 44431 14689999999999987 4444 445
Q ss_pred eeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHH--hcCcc
Q 018731 253 SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGE--SIGFR 317 (351)
Q Consensus 253 ~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~--~~G~~ 317 (351)
-+|-|+.++++++.+..++++.+.+. +.+-+| .|.+. .....+.+++..+.+.++ ..|+.
T Consensus 252 vLI~GvNDseeda~~La~llk~l~~~-vnlI~~-N~~~~---~~~~p~~~~i~~f~~~l~~~~~g~~ 313 (336)
T PRK14470 252 VMISGVNVGEEDAAALGRLLAGIPVR-LNPIAV-NDATG---RYRPPDEDEWNAFRDALARELPGTP 313 (336)
T ss_pred EEEecccCCHHHHHHHHHHHhcCCCe-EEEecc-CCCCC---CccCCCHHHHHHHHHHHHHccCCeE
Confidence 56678899999999999999988663 343234 34222 124567788888888884 55664
No 124
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.40 E-value=4.1e-12 Score=117.96 Aligned_cols=185 Identities=19% Similarity=0.292 Sum_probs=122.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCCCCc-hhHHHHHHHHHhCCCcEEEEeccCCCCCCC-CcHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAPPDP-MEPENTAKAIASWGVDYIVLTSVDRDDIPD-GGSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~~~~-eei~~~~~~~~~~G~~~I~ltgg~~~~l~~-~~~~~~~~li~~ik~~~ 180 (351)
..-++.+..||-..|+||--...++....++ +++.+.++...+.|+.+|++++-+...+.. -+ ..+..++..+.+..
T Consensus 187 lieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig-~slp~ll~klv~~i 265 (547)
T KOG4355|consen 187 LIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIG-KSLPKLLWKLVEVI 265 (547)
T ss_pred ceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhh-hhhHHHHHHHHHhc
Confidence 5677888999999999998876666655555 788888988889999999998876443321 11 34566666666666
Q ss_pred CC---cEEEEeecCCCC-C-HHHHHHHHHcCCCeeec-chhchHH-----HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe
Q 018731 181 PD---IMVECLTSDFRG-D-LRAVETLVHSGLDVFAH-NIETVKR-----LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI 249 (351)
Q Consensus 181 p~---i~i~~~~~~~~~-~-~e~l~~L~~aG~~~i~~-~ies~~~-----~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~ 249 (351)
|+ +.+....|-+.+ . ++....|+--.+-.+.+ -++|.++ |.+-++ ..+++.+.+. +.+.-|||.
T Consensus 266 Pe~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc--~~dfk~Vvd~---LterVPgi~ 340 (547)
T KOG4355|consen 266 PESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYC--NFDFKIVVDF---LTERVPGIT 340 (547)
T ss_pred chhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHh--hhhHHHHHHH---HHhhCCCcE
Confidence 63 222222222211 1 12222222222222222 3566443 333232 3345555554 444449999
Q ss_pred EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcc
Q 018731 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHL 293 (351)
Q Consensus 250 v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~ 293 (351)
+.+++|.|| |||+|||.++++++++.++..+.+++|. +| ||.+.
T Consensus 341 IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAk 387 (547)
T KOG4355|consen 341 IATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAK 387 (547)
T ss_pred EeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHh
Confidence 999999999 9999999999999999999999998887 66 88763
No 125
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.39 E-value=1.4e-10 Score=109.72 Aligned_cols=197 Identities=14% Similarity=0.155 Sum_probs=131.2
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh-CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhCCCc--
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPDI-- 183 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~p~i-- 183 (351)
..+.||+.+|.||.-........++.+||.+.+..+.. .++..|+|+| |+| +. +.+.+.+.++.++... ++
T Consensus 108 SsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEP--L~--N~d~vi~al~~l~~~~-g~~~ 182 (345)
T PRK14466 108 SSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPERDKLTNLVFMGMGEP--LD--NLDEVLKALEILTAPY-GYGW 182 (345)
T ss_pred EcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcC--cc--cHHHHHHHHHHHhhcc-ccCc
Confidence 34669999999999665432344788899888876643 3689999999 997 43 2567777777776532 22
Q ss_pred ---EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcC--CCCCHHHHHHHHHHHHHhCCCCe--EEEeee
Q 018731 184 ---MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAKLSKKGLI--TKSSIM 255 (351)
Q Consensus 184 ---~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~~~~~~~Gi~--v~~~~I 255 (351)
+|.+.|++. .+. +..+.+.+--.+.+++.+.++ .++.+-. +.++.++.+++++...+. .|=. +..-+|
T Consensus 183 s~r~ItVsT~G~--~~~-i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~-~~rri~~Ey~Li 258 (345)
T PRK14466 183 SPKRITVSTVGL--KKG-LKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFS-KQRRVSFEYIVF 258 (345)
T ss_pred CCceEEEEcCCC--chH-HHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHh-hCCEEEEEEEEe
Confidence 566666552 332 344443333456778887655 4533331 246789999999886442 2333 444555
Q ss_pred eeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcc
Q 018731 256 LGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (351)
Q Consensus 256 vGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~ 317 (351)
=|++++.|++.+..++++.++. .|.+-+| .|.|.. ....++.+.++.+.+.++..|+.
T Consensus 259 ~gvND~~e~a~~L~~ll~~~~~-~VNLIp~-Np~~~~--~~~~~s~~~~~~F~~~L~~~gi~ 316 (345)
T PRK14466 259 KGLNDSLKHAKELVKLLRGIDC-RVNLIRF-HAIPGV--DLEGSDMARMEAFRDYLTSHGVF 316 (345)
T ss_pred CCCCCCHHHHHHHHHHHcCCCc-eEEEEec-CCCCCC--CCcCCCHHHHHHHHHHHHHCCCc
Confidence 6789999999999999998874 5666444 354332 23457788899999999988874
No 126
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.37 E-value=1.2e-10 Score=112.54 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=120.2
Q ss_pred eEEEEeeccCCCCCCcCcccCCCC--CCCCCCchhHHHHHHHHHh-CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSR--NPAPPDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~--~~~~~~~eei~~~~~~~~~-~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
-...+.+|++|+.+|+||...... ....++.+++.+.++.+.+ .+++.|.||||+|-.+++ +.+..+++.+++.
T Consensus 108 ~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d---~~L~~iL~~L~~I 184 (417)
T TIGR03820 108 DRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSD---DYLDWILTELRAI 184 (417)
T ss_pred CEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCCh---HHHHHHHHHHhhc
Confidence 456777899999999999876522 1233556888888888776 489999999999855553 4566667888874
Q ss_pred CCCcE-EEEee--c---CCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE-
Q 018731 180 KPDIM-VECLT--S---DFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS- 252 (351)
Q Consensus 180 ~p~i~-i~~~~--~---~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~- 252 (351)
|.+. |.+.+ + ...++++.++.|++++...|.+.++..++ ..++..++++.+++ +|+.+..
T Consensus 185 -phV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~E----------it~~a~~Al~~L~~--aGI~l~nQ 251 (417)
T TIGR03820 185 -PHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPRE----------ITASSKKALAKLAD--AGIPLGNQ 251 (417)
T ss_pred -CCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHh----------ChHHHHHHHHHHHH--cCCEEEee
Confidence 5553 33322 2 23468999999999987777665554332 35788899999999 9998544
Q ss_pred -eeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 253 -SIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 253 -~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.++=|.+++.+.+.+..+.+.++|+.--.+
T Consensus 252 sVLLkGVND~~~~l~~L~~~L~~~gV~PYYl 282 (417)
T TIGR03820 252 SVLLAGVNDCPRIMKKLVHKLVANRVRPYYL 282 (417)
T ss_pred ceEECCcCCCHHHHHHHHHHHHHCCCeecee
Confidence 455577999999999999999999754334
No 127
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.36 E-value=2.1e-10 Score=109.31 Aligned_cols=199 Identities=15% Similarity=0.171 Sum_probs=132.7
Q ss_pred EEeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh----CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 106 IMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS----WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 106 ~i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~----~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
-+..+.||+.+|.||..+.......++.+|+.+++..+.. .++..|+|.| |+| +.+ .+.+.++++.+++..
T Consensus 102 cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEP--L~N--~d~v~~~l~~l~~~~ 177 (348)
T PRK14467 102 CVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEP--LAN--YENVRKAVQIMTSPW 177 (348)
T ss_pred EEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChh--hcC--HHHHHHHHHHHcChh
Confidence 3467999999999999875432345778898877765443 3578999999 987 432 678888888887521
Q ss_pred CCc-----EEEEeecCCCCCHHHHHHHHHc----CCCeeecchhchHH-HHhhhcCC--CCCHHHHHHHHHHHH-HhCCC
Q 018731 181 PDI-----MVECLTSDFRGDLRAVETLVHS----GLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVLKHAK-LSKKG 247 (351)
Q Consensus 181 p~i-----~i~~~~~~~~~~~e~l~~L~~a----G~~~i~~~ies~~~-~~~~~r~~--~~~~~~~l~~i~~~~-~~~~G 247 (351)
++ ++++.|.+.. +.++.+... .++ +.+++.+.++ .++.+.+. ....++.+++++... + .|
T Consensus 178 -gl~~~~r~itvsT~G~~---~~i~~l~~~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~--~g 250 (348)
T PRK14467 178 -GLDLSKRRITISTSGII---HQIKRMAEDPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLP--PG 250 (348)
T ss_pred -ccCcCCCcEEEECCCCh---hHHHHHHhhccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHh--cC
Confidence 34 5666666532 334444442 343 4578888765 56544411 347777777776543 3 45
Q ss_pred Ce--EEEeeeeeCCCCHHHHHHHHHHHHhCC-CCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 248 LI--TKSSIMLGLGESDDDLKEAMADLRSID-VDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 248 i~--v~~~~IvGlgEt~e~~~~~l~~l~~lg-~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
-+ +..-+|-|+.++.+++.++.++++.++ ...|.+-+| .|++.. .....++++++++.+.++..|+.-
T Consensus 251 ~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPy-np~~~~--~~~~ps~e~i~~f~~~L~~~gi~v 321 (348)
T PRK14467 251 RRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPF-NPDPEL--PYERPELERVYKFQKILWDNGIST 321 (348)
T ss_pred CeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecC-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCcE
Confidence 55 445556688999999999999999885 344555333 354443 234567788888888888888753
No 128
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.34 E-value=2.3e-10 Score=102.74 Aligned_cols=198 Identities=16% Similarity=0.237 Sum_probs=129.8
Q ss_pred EEeeccCCCC--------CCcCcccCCCCC---CCCCCc-hhHHHHHHHHHh-CC-CcE-EEEeccCCCCCCCCcHHHHH
Q 018731 106 IMLLGDTCTR--------GCRFCAVKTSRN---PAPPDP-MEPENTAKAIAS-WG-VDY-IVLTSVDRDDIPDGGSGHFA 170 (351)
Q Consensus 106 ~i~~s~gC~~--------~C~FC~~~~~~~---~~~~~~-eei~~~~~~~~~-~G-~~~-I~ltgg~~~~l~~~~~~~~~ 170 (351)
.+-.+-.||+ +|+||+...+.. ....+. +++.+.++.+.+ ++ .++ ++|+..+.+ +.. .+.+.
T Consensus 27 ~ld~GF~CPNRDGti~rGGCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~~TNT-yAp--vevLr 103 (312)
T COG1242 27 TLDGGFSCPNRDGTIGRGGCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGKYIAYFQAYTNT-YAP--VEVLR 103 (312)
T ss_pred eccCCCCCCCCCCcccCCceeeecCCCCCccccCcccCHHHHHHHHHHHHHHhhcCCcEEEEEeccccc-cCc--HHHHH
Confidence 3445666774 699998765421 111222 455566654433 22 334 478777654 321 45666
Q ss_pred HHHHHHHHhCCC-cEEEEee-cCCCCCHHHHHHHHHcCCC---eeecchhchHHH-HhhhcCCCCCHHHHHHHHHHHHHh
Q 018731 171 RTVKAMKKQKPD-IMVECLT-SDFRGDLRAVETLVHSGLD---VFAHNIETVKRL-QRIVRDPRAGYEQSLEVLKHAKLS 244 (351)
Q Consensus 171 ~li~~ik~~~p~-i~i~~~~-~~~~~~~e~l~~L~~aG~~---~i~~~ies~~~~-~~~~r~~~~~~~~~l~~i~~~~~~ 244 (351)
+..+..-.. ++ +.+.+.| ||-+ .++.++.|.+..-. ++-+|++|..+. .+.++ ++|++..+.++++++++
T Consensus 104 e~ye~aL~~-~~VVGLsIgTRPDCl-pd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iN-RgHd~~~y~dav~r~rk- 179 (312)
T COG1242 104 EMYEQALSE-AGVVGLSIGTRPDCL-PDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRIN-RGHDFACYVDAVKRLRK- 179 (312)
T ss_pred HHHHHHhCc-CCeeEEeecCCCCCC-cHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHh-cccchHHHHHHHHHHHH-
Confidence 666655543 44 3555433 5653 78888888887433 134699998763 34443 49999999999999999
Q ss_pred CCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc---CCCCCccc----ccCCCCHHHHHHH-HHHHH
Q 018731 245 KKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL---QPTPLHLT----VKEYVTPEKFDFW-KAYGE 312 (351)
Q Consensus 245 ~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l---~PTp~~~~----~~~~v~~~e~~~~-~~~~~ 312 (351)
.||+|++.+|+|| ||+.+++.+|++.+.+++++-|-+. .| .-|++... .-...+.+++..+ .+.++
T Consensus 180 -rgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH-~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le 254 (312)
T COG1242 180 -RGIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLH-PLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLE 254 (312)
T ss_pred -cCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEE-EEEEecCChHHHHHHcCCceeccHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999998884 33 22777521 1234566666553 34444
No 129
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.33 E-value=2.1e-10 Score=110.42 Aligned_cols=190 Identities=11% Similarity=0.102 Sum_probs=131.8
Q ss_pred ccC-CCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhC-CCcE--EEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCc
Q 018731 110 GDT-CTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASW-GVDY--IVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDI 183 (351)
Q Consensus 110 s~g-C~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~-G~~~--I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i 183 (351)
+.. ||.+|.||......... .++.+..++.++.+.+. +.+. |.+.||+|.... ..|.+.+..+.+++ .+.
T Consensus 14 t~~~CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~----~~f~~~~~~l~~k~~~~~ 89 (378)
T COG0641 14 TGFECNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAG----LDFYRKAVALQQKYANGK 89 (378)
T ss_pred ccCccCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccch----HHHHHHHHHHHHHHhcCC
Confidence 444 99999999998754322 36666677777766553 4465 677899984332 45555555544432 254
Q ss_pred EEE--EeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhc---CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 184 MVE--CLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVR---DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 184 ~i~--~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r---~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
++. ..|++.+++++.++.+++.|+ .|.++++...++++..| +.+.+++.++++++.+++ .++.+.+.+++.
T Consensus 90 ~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~--~~v~~~~~~vv~- 165 (378)
T COG0641 90 TISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQA--HGVDFNTLTVVN- 165 (378)
T ss_pred eeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHH--cCCcEEEEEEEc-
Confidence 544 678888899999999999999 89999999877654444 224699999999999999 888877776643
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCc-ccccCCCCHHHHHHH
Q 018731 259 GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH-LTVKEYVTPEKFDFW 307 (351)
Q Consensus 259 gEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~-~~~~~~v~~~e~~~~ 307 (351)
.++.+...+.++++.+.|...+.+.+.+.+.+.. ......++++++.++
T Consensus 166 ~~n~~~~~ei~~~l~~~g~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~f 215 (378)
T COG0641 166 RQNVLHPEEIYHFLKSEGSKFIQFIPLVESDNRGDSLLEFSVTAEEYGQF 215 (378)
T ss_pred hhHhhCHHHHHHHHHHcccceEEEEecccCCCCCccccccccCHHHHHHH
Confidence 7899999999999999997776663332111110 001245666666553
No 130
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=99.32 E-value=3e-11 Score=110.48 Aligned_cols=171 Identities=19% Similarity=0.261 Sum_probs=124.5
Q ss_pred cccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCC-CC-----CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 018731 91 GECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRN-PA-----PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG 164 (351)
Q Consensus 91 ~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~-~~-----~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~ 164 (351)
+.|..|+ ...+.+|.-||.+|-||.++..+. .. +......++++.++..++...+-+|||+| +-
T Consensus 22 ~~C~~G~------KlVlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~GasiTGGdP--l~-- 91 (353)
T COG2108 22 RLCVLGG------KLVLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGASITGGDP--LL-- 91 (353)
T ss_pred HHHhcCC------ceEEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhccccccccCCCh--HH--
Confidence 5677774 447778999999999999986442 11 11112334455555566777888999997 32
Q ss_pred cHHHHHHHHHHHHHhC-CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 018731 165 GSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKL 243 (351)
Q Consensus 165 ~~~~~~~li~~ik~~~-p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~ 243 (351)
..++..++++.+|+.+ -+++++.+|++...+++.++.|.+||+|.|-++.... .....+.+++.++.+++
T Consensus 92 ~ieR~~~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~---------~~~~~e~~i~~l~~A~~ 162 (353)
T COG2108 92 EIERTVEYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRP---------GSKSSEKYIENLKIAKK 162 (353)
T ss_pred HHHHHHHHHHHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCc---------cccccHHHHHHHHHHHH
Confidence 1678889999999876 4588999998877899999999999999996654200 12356788999999998
Q ss_pred hCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 244 SKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 244 ~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.|+.+..-+. .+-.-++.+.+.++++.+.+.+++++.
T Consensus 163 --~g~dvG~EiP-aipg~e~~i~e~~~~~~~~~~~FlNiN 199 (353)
T COG2108 163 --YGMDVGVEIP-AIPGEEEAILEFAKALDENGLDFLNIN 199 (353)
T ss_pred --hCccceeecC-CCcchHHHHHHHHHHHHhcccceeeee
Confidence 8887655442 232235678899999999999999984
No 131
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.30 E-value=4.8e-10 Score=106.91 Aligned_cols=201 Identities=13% Similarity=0.124 Sum_probs=128.0
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHhCC--CcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHh-CCC
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWG--VDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ-KPD 182 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~~G--~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~-~p~ 182 (351)
+..+.||+.+|.||..+.......++.+|+.+++..+...| ++.|+|+| |+| +.+ ..+.+.++.+++. ..+
T Consensus 104 vssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEP--Lln---~~v~~~i~~l~~~~~~~ 178 (347)
T PRK14453 104 ISSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEA--LAN---PELFDALKILTDPNLFG 178 (347)
T ss_pred EecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCc--cCC---HHHHHHHHHHhcccccC
Confidence 34688999999999987643334578899988887665555 88999999 997 433 3577888777763 223
Q ss_pred c---EEEEeecCCCCCHHHHHHHHHcC-CCeeecchhchHH-HHhhhcC--CCCCHHHHHHHHHHHHHhCCCC--eEEEe
Q 018731 183 I---MVECLTSDFRGDLRAVETLVHSG-LDVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAKLSKKGL--ITKSS 253 (351)
Q Consensus 183 i---~i~~~~~~~~~~~e~l~~L~~aG-~~~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~~~~~~~Gi--~v~~~ 253 (351)
+ ++.+.|.+.. . .++.+.+.. --.+.+++.+.++ .++.+.+ +....++.+++++...+. .|. .+..-
T Consensus 179 ~~~r~itVsT~G~~-~--~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~-~~~~V~iry~ 254 (347)
T PRK14453 179 LSQRRITISTIGII-P--GIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRH-TGRKVYIAYI 254 (347)
T ss_pred CCCCcEEEECCCCc-h--hHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHh-cCCcEEEEEE
Confidence 2 3666565543 2 233333321 1224446666544 4433321 245677777766554331 344 45667
Q ss_pred eeeeCCCCHHHHHHHHHHHHhCC----CCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcc
Q 018731 254 IMLGLGESDDDLKEAMADLRSID----VDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (351)
Q Consensus 254 ~IvGlgEt~e~~~~~l~~l~~lg----~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~ 317 (351)
+|-|+.++.+++.+.+++++.++ +..|.+-+| .|++.........+.+++..+.++++..|+.
T Consensus 255 LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPy-n~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~ 321 (347)
T PRK14453 255 MLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPY-NSTDKTPFKFQSSSAGQIKQFCSTLKSAGIS 321 (347)
T ss_pred eECCCCCCHHHHHHHHHHHhhccccCCcceEEEecC-CCCCCCCccCCCCCHHHHHHHHHHHHHCCCc
Confidence 77799999999999999999874 344555333 3433221123457778899999999999875
No 132
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.28 E-value=6.7e-10 Score=104.25 Aligned_cols=171 Identities=18% Similarity=0.163 Sum_probs=116.5
Q ss_pred CchhHHHHHHHHH---hCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 132 DPMEPENTAKAIA---SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 132 ~~eei~~~~~~~~---~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
+.+++.+.++... ..+...|.|+||+|. +. .+.+.++++.+++. ++.+.+.|+++. ..+.++.+.+. +|
T Consensus 107 t~eel~~~i~~~~~~~~~~~~~V~~sGGEPl-l~---~~~l~~l~~~~k~~--g~~~~i~TnG~~-~~~~~~~ll~~-~d 178 (295)
T TIGR02494 107 TVEEVMRVVLRDSIFYRNSGGGVTLSGGEPL-LQ---PEFALALLQACHER--GIHTAVETSGFT-PWETIEKVLPY-VD 178 (295)
T ss_pred cHHHHHHHHHHHHHhcccCCCcEEeeCcchh-ch---HHHHHHHHHHHHHc--CCcEeeeCCCCC-CHHHHHHHHhh-CC
Confidence 3455555544322 224568999999974 33 24457999999986 566666666654 55677777764 78
Q ss_pred eeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eeeeeCCCCHHHHHHHHHHHHhCC--CCEEeee
Q 018731 209 VFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SIMLGLGESDDDLKEAMADLRSID--VDILTLG 283 (351)
Q Consensus 209 ~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~IvGlgEt~e~~~~~l~~l~~lg--~d~i~i~ 283 (351)
.+.+++++.++ .++.++ +.+++..++.++.+.+ .|+.+.. .++.|+.++.+++.+.++++.+++ ++.+.+.
T Consensus 179 ~~~isl~~~~~~~~~~~~--g~~~~~vl~~i~~l~~--~~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~ 254 (295)
T TIGR02494 179 LFLFDIKHLDDERHKEVT--GVDNEPILENLEALAA--AGKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLL 254 (295)
T ss_pred EEEEeeccCChHHHHHHh--CCChHHHHHHHHHHHh--CCCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEec
Confidence 88888888755 566666 4588999999999999 7776444 446677788999999999999998 6777775
Q ss_pred cccCCCCCc----------ccccCCCCHHHHHHHHHHHHhcC
Q 018731 284 QYLQPTPLH----------LTVKEYVTPEKFDFWKAYGESIG 315 (351)
Q Consensus 284 ~~l~PTp~~----------~~~~~~v~~~e~~~~~~~~~~~G 315 (351)
+| .|.+.. +...+.++.+++.++++.+++.|
T Consensus 255 ~~-~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g 295 (295)
T TIGR02494 255 PY-HRLGENKYRQLGREYPDSEIPDPAEEQLLELKEIFESKG 295 (295)
T ss_pred CC-CchhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHhcC
Confidence 44 352211 11123467778888777766544
No 133
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.27 E-value=9.7e-10 Score=104.81 Aligned_cols=199 Identities=15% Similarity=0.112 Sum_probs=132.4
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHhC------CCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW------GVDYIVLT-SVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~~------G~~~I~lt-gg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
+....||+.+|.||..+.......++++|+.+++..+... ....|++. ||+| |.+ .+.+.++++.+++.
T Consensus 114 vSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEP--L~N--~d~v~~~l~~l~~~ 189 (356)
T PRK14462 114 VSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEP--LDN--LDNVSKAIKIFSEN 189 (356)
T ss_pred eeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCccc--ccC--HHHHHHHHHHhcCc
Confidence 3457899999999987654323457888988877644331 24567776 7776 443 67888999999874
Q ss_pred -CCCc---EEEEeecCCCCCHHHHHHHHHcCC-CeeecchhchHH-HHhhhcC--CCCCHHHHHHHHHHH-HHhCCCCe-
Q 018731 180 -KPDI---MVECLTSDFRGDLRAVETLVHSGL-DVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHA-KLSKKGLI- 249 (351)
Q Consensus 180 -~p~i---~i~~~~~~~~~~~e~l~~L~~aG~-~~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~~-~~~~~Gi~- 249 (351)
.-++ ++++.|.++. +.++.|.+.++ -.+.+++-+.++ .++.+.+ ..+..++.+++++.. .+ .|-.
T Consensus 190 ~Gl~~~~r~itVsTsG~~---~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~--~~~~i 264 (356)
T PRK14462 190 DGLAISPRRQTISTSGLA---SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPID--QRKRV 264 (356)
T ss_pred cCCCcCCCceEEECCCCh---HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHH--hCCeE
Confidence 2222 4566565543 56777887755 235556777665 4544431 134668899988744 45 4555
Q ss_pred -EEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 250 -TKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 250 -v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
+.--+|-|+.++.|++.++.++++.++. .|.+-+| .|.+.. .....+++++..++++++..|+.-
T Consensus 265 ~ieyvLI~GvNDs~e~a~~La~llk~l~~-~VnLIPy-n~~~~~--~~~~ps~e~i~~f~~~l~~~gi~v 330 (356)
T PRK14462 265 MFEYLVIKDVNDDLKSAKKLVKLLNGIKA-KVNLILF-NPHEGS--KFERPSLEDMIKFQDYLNSKGLLC 330 (356)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhhcCc-EEEEEeC-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCcE
Confidence 4556677889999999999999999874 5555433 343332 224567888999999988888753
No 134
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.23 E-value=3.4e-09 Score=101.76 Aligned_cols=199 Identities=12% Similarity=0.107 Sum_probs=127.2
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh----------CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHH
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS----------WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAM 176 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~----------~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~i 176 (351)
..+-||+.+|.||..+.......++.+|+.+++..+.. .+++.|++.| |+| |.+ .+.+.+.++.+
T Consensus 108 SsQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEP--L~N--~d~v~~al~~l 183 (372)
T PRK11194 108 SSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEP--LLN--LNNVVPAMEIM 183 (372)
T ss_pred ecCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCcc--ccC--HHHHHHHHHHH
Confidence 34699999999998775332344777888777654332 1267777766 776 432 56777888888
Q ss_pred HHhC-CCc---EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCC--CCCHHHHHHHHHHHHHhCC---
Q 018731 177 KKQK-PDI---MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVLKHAKLSKK--- 246 (351)
Q Consensus 177 k~~~-p~i---~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~--~~~~~~~l~~i~~~~~~~~--- 246 (351)
.+.. -++ ++++.|.+. .+.++.|.+..--.+.+++-+.++ .++.+.+. .+..++.+++++...+. .
T Consensus 184 ~~~~g~~i~~r~itVsTsG~---~~~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~-~~~~ 259 (372)
T PRK11194 184 LDDFGFGLSKRRVTLSTSGV---VPALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEK-SNAN 259 (372)
T ss_pred hhhhccCcCCCeEEEECCCC---chHHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHh-cccC
Confidence 7532 123 666656553 245666766542245556666554 55444411 34567777765554331 3
Q ss_pred --CCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 247 --GLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 247 --Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
.+.+..-+|-|+.++.+++.++.++++.++. .|.+-+| .|.+.. .....+++++..+.+.++..|+.-
T Consensus 260 ~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~-~VnLIPY-N~~~~~--~~~~ps~e~v~~f~~~L~~~Gi~v 329 (372)
T PRK11194 260 QGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPC-KINLIPW-NPFPGA--PYGRSSNSRIDRFSKVLMEYGFTV 329 (372)
T ss_pred CCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEecC-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCeE
Confidence 2556777888999999999999999999864 5555333 343322 124567788888888888888864
No 135
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.23 E-value=3.6e-09 Score=100.89 Aligned_cols=198 Identities=15% Similarity=0.148 Sum_probs=129.3
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh-C--CCcE-EEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-W--GVDY-IVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD 182 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~-~--G~~~-I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~ 182 (351)
+..+.||+.+|.||..........++.+|+.+++..... . .+.. |+++||+| +.+ .+.+.++++.+++.. +
T Consensus 105 vSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEP--Lln--~d~v~~~l~~l~~~~-g 179 (342)
T PRK14454 105 VSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEP--LDN--YENVMKFLKIVNSPY-G 179 (342)
T ss_pred EEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchh--hcC--HHHHHHHHHHHhccc-c
Confidence 457899999999998765332345788999887765543 1 3445 55788987 432 577889999998631 3
Q ss_pred c-----EEEEeecCCCCCHHHHHHHHHcCC-CeeecchhchHH-HHhhhcC--CCCCHHHHHHHHHH-HHHhCCCCe--E
Q 018731 183 I-----MVECLTSDFRGDLRAVETLVHSGL-DVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKH-AKLSKKGLI--T 250 (351)
Q Consensus 183 i-----~i~~~~~~~~~~~e~l~~L~~aG~-~~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~-~~~~~~Gi~--v 250 (351)
+ ++.+.|.+. .+ .+..+.+.+. ..+.+++.+.++ .++.+.+ .....++.+++++. +.+ .|-+ +
T Consensus 180 i~~~~r~itvsTsG~--~p-~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~--~~~rv~i 254 (342)
T PRK14454 180 LNIGQRHITLSTCGI--VP-KIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINK--TNRRITF 254 (342)
T ss_pred cCcCCCceEEECcCC--hh-HHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHH--hCCEEEE
Confidence 4 566656553 23 3566766542 226677777765 4544441 13466777776654 344 5555 4
Q ss_pred EEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 251 KSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 251 ~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
..-+|-|+.++.+++.++.++++.+.. .+.+-+| .|++.. .....+++++..+.++++..|+.-
T Consensus 255 ey~LI~gvNDs~eda~~La~llk~l~~-~VnLiPy-n~~~~~--~~~~ps~e~l~~f~~~l~~~gi~v 318 (342)
T PRK14454 255 EYALVKGVNDSKEDAKELGKLLKGMLC-HVNLIPV-NEVKEN--GFKKSSKEKIKKFKNILKKNGIET 318 (342)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEEec-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCcE
Confidence 455677889999999999999998743 4554333 343222 224567888999999998888754
No 136
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.19 E-value=3.6e-09 Score=94.31 Aligned_cols=177 Identities=12% Similarity=0.116 Sum_probs=132.3
Q ss_pred CCCchhHHHHHHHHH---hCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC
Q 018731 130 PPDPMEPENTAKAIA---SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 130 ~~~~eei~~~~~~~~---~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
..+++++.+.+..-. +.+-..|+|+||+|. +. .+.+.++++.+++. ++++.+-|+++ .+.+.++.+...
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPl-lq---~~fl~~l~~~~k~~--gi~~~leTnG~-~~~~~~~~l~~~- 89 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLSGGEVL-MQ---AEFATRFLQRLRLW--GVSCAIETAGD-APASKLLPLAKL- 89 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHH-cC---HHHHHHHHHHHHHc--CCCEEEECCCC-CCHHHHHHHHHh-
Confidence 367888877766432 235568999999974 32 45678999999986 67666556655 478888888876
Q ss_pred CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC--eEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 207 LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL--ITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 207 ~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi--~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+|.+.+.+...++ .|+.+. +.+.+.+++.++.+.+ .|. .+.+.+|-|+.++.|++.++++++++++++.+.+-
T Consensus 90 ~D~~l~DiK~~d~~~~~~~t--G~~~~~il~nl~~l~~--~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~ll 165 (213)
T PRK10076 90 CDEVLFDLKIMDATQARDVV--KMNLPRVLENLRLLVS--EGVNVIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLL 165 (213)
T ss_pred cCEEEEeeccCCHHHHHHHH--CCCHHHHHHHHHHHHh--CCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 9999998888765 577776 6789999999999998 665 46888899999999999999999999988877664
Q ss_pred cccCCC----------CCcccccCCCCHHHHHHHHHHHHhcCccee
Q 018731 284 QYLQPT----------PLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (351)
Q Consensus 284 ~~l~PT----------p~~~~~~~~v~~~e~~~~~~~~~~~G~~~~ 319 (351)
+| .|. +..+...+..++++++++++++++.|+...
T Consensus 166 py-h~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 166 PF-HQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred cC-CccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 44 231 111122345678888889999988888643
No 137
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.18 E-value=2.3e-09 Score=98.71 Aligned_cols=168 Identities=18% Similarity=0.302 Sum_probs=121.7
Q ss_pred cc-CCCCCCcCcccCCCCC----CCC-CCchhHHHHHHHHHhC------CCcEEEEec-cCCCCCCCCcHHHHHHHHHHH
Q 018731 110 GD-TCTRGCRFCAVKTSRN----PAP-PDPMEPENTAKAIASW------GVDYIVLTS-VDRDDIPDGGSGHFARTVKAM 176 (351)
Q Consensus 110 s~-gC~~~C~FC~~~~~~~----~~~-~~~eei~~~~~~~~~~------G~~~I~ltg-g~~~~l~~~~~~~~~~li~~i 176 (351)
+- .|+++|.||....... ..+ ..++.+.+..+.+... .++++.|++ |+|+ |. .++.++++++
T Consensus 30 ~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPT-Ly----~~L~elI~~~ 104 (296)
T COG0731 30 SKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPT-LY----PNLGELIEEI 104 (296)
T ss_pred chhhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcc-cc----cCHHHHHHHH
Confidence 44 8999999998844221 111 2345677777766654 577888875 6765 43 4799999999
Q ss_pred HHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HH-hhhcCC--CCCHHHHHHHHHHHHHhCCCC-eEE
Q 018731 177 KKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQ-RIVRDP--RAGYEQSLEVLKHAKLSKKGL-ITK 251 (351)
Q Consensus 177 k~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~-~~~r~~--~~~~~~~l~~i~~~~~~~~Gi-~v~ 251 (351)
++.. ++++-+.|++.+ +++++.|. -+|.+++++++.++ .+ ++.| | +..++++++.++.+++...|- -+.
T Consensus 105 k~~g-~~~tflvTNgsl--pdv~~~L~--~~dql~~sLdA~~~~~~~~InR-P~~~~~~e~ile~L~~~~~~~~~~~vir 178 (296)
T COG0731 105 KKRG-KKTTFLVTNGSL--PDVLEELK--LPDQLYVSLDAPDEKTFRRINR-PHKKDSWEKILEGLEIFRSEYKGRTVIR 178 (296)
T ss_pred HhcC-CceEEEEeCCCh--HHHHHHhc--cCCEEEEEeccCCHHHHHHhcC-CCCcchHHHHHHHHHHhhhcCCCcEEEE
Confidence 9973 255555566542 78888887 48999999999877 44 5555 4 358999999999998831233 356
Q ss_pred EeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 252 SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 252 ~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
+.++=|+..+.|++.+.+++++...+|.|.+..+.+|
T Consensus 179 ~tlvkg~N~~~e~~~~~a~ll~~~~Pd~velk~~~rp 215 (296)
T COG0731 179 TTLVKGINDDEEELEEYAELLERINPDFVELKTYMRP 215 (296)
T ss_pred EEEeccccCChHHHHHHHHHHHhcCCCeEEEecCccC
Confidence 6666677888888999999999999999999766666
No 138
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.18 E-value=4.1e-09 Score=99.90 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=128.2
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh-CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhC--CC
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQK--PD 182 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~--p~ 182 (351)
+..+.||+.+|.||......-...++++|+.+.+..+.+ ..++.|+|+| |+| +.+ .+.+.+.++.+.+.. +.
T Consensus 100 vSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEP--l~N--~d~vl~ai~~l~~~~~i~~ 175 (344)
T PRK14464 100 VSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEP--AHN--LDNVLEAIDLLGTEGGIGH 175 (344)
T ss_pred EEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCcc--cCC--HHHHHHHHHHhhchhcCCC
Confidence 357999999999998765322234677888887776655 4589999999 987 332 466777666665431 12
Q ss_pred cEEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HH-hhhcC-CCCCHHHHHHHHHHHHHhCCCCeEEE--eeee
Q 018731 183 IMVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQ-RIVRD-PRAGYEQSLEVLKHAKLSKKGLITKS--SIML 256 (351)
Q Consensus 183 i~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~-~~~r~-~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~Iv 256 (351)
-.+.+.|.+ ..+.+..|.+.++. .+.+++.+.++ .+ +.+.. ++.+.++.+++++...+. .|-.+.. -++=
T Consensus 176 r~itiST~G---~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~-~grri~~EyvLl~ 251 (344)
T PRK14464 176 KNLVFSTVG---DPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARA-TGYPIQYQWTLLE 251 (344)
T ss_pred ceEEEeccc---CchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHH-HCCEEEEEEEEeC
Confidence 234443322 34566777765443 34456676654 34 33321 256899999988877543 4765433 3344
Q ss_pred eCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 257 GLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 257 GlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
|++++.+++.+..++++.+.+. +.+-+| .|.+.. ....++.++...+.+.++..|+.-
T Consensus 252 GVNDs~e~a~~L~~~l~~~~~~-vNLIPy-N~v~g~--~~~rp~~~~i~~f~~~L~~~gi~~ 309 (344)
T PRK14464 252 GVNDSDEEMDGIVRLLKGKYAV-MNLIPY-NSVDGD--AYRRPSGERIVAMARYLHRRGVLT 309 (344)
T ss_pred CCCCCHHHHHHHHHHHhccccc-cceecC-CccCCC--CccCCCHHHHHHHHHHHHHCCceE
Confidence 7899999999999999877653 344333 343332 123466788888988888888753
No 139
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.13 E-value=1.2e-08 Score=96.78 Aligned_cols=197 Identities=12% Similarity=0.103 Sum_probs=130.5
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh---CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhC-C
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS---WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQK-P 181 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~---~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~-p 181 (351)
+..+.||+.+|.||+-....-...++..|+.+.+..+.. ..+..|+|.| |+| |.+ ++.+.+.++.+++.. .
T Consensus 109 vSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEP--L~N--~d~V~~~~~~l~~~~~~ 184 (342)
T PRK14465 109 ISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEP--MHN--YFNVIRAASILHDPDAF 184 (342)
T ss_pred EEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcc--hhh--HHHHHHHHHHHhChhhh
Confidence 346889999999999866432344677888776655443 3578899988 997 432 577888888776641 1
Q ss_pred C---cEEEEeecCCCCCHHHHHHHHH-cCCCeeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHH-HhCCCCeEE--
Q 018731 182 D---IMVECLTSDFRGDLRAVETLVH-SGLDVFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAK-LSKKGLITK-- 251 (351)
Q Consensus 182 ~---i~i~~~~~~~~~~~e~l~~L~~-aG~~~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~-~~~~Gi~v~-- 251 (351)
+ -+|++.|++. . +.+..|.+ ..--.+.+++.+.++ .+..+- .+++..++.+++++... + .|-.+.
T Consensus 185 ~~~~r~itvST~G~--~-~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~--~~r~v~ie 259 (342)
T PRK14465 185 NLGAKRITISTSGV--V-NGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRE--LKRRITFE 259 (342)
T ss_pred cCCCCeEEEeCCCc--h-HHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHH--cCCEEEEE
Confidence 2 2666656543 2 34455553 332367788887655 453331 13578899999998654 4 455544
Q ss_pred EeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcc
Q 018731 252 SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (351)
Q Consensus 252 ~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~ 317 (351)
.-+|-|+.++.|++.+..++++.++.. +.+-+| .| +. ......+.+++..+.+.++..|+.
T Consensus 260 yvLI~GvNDs~eda~~L~~ll~~l~~k-VnLIPy-N~-~~--~~~~~ps~e~i~~F~~~L~~~Gi~ 320 (342)
T PRK14465 260 YVMIPGVNMGRENANKLVKIARSLDCK-INVIPL-NT-EF--FGWRRPTDDEVAEFIMLLEPAGVP 320 (342)
T ss_pred EEEECCccCCHHHHHHHHHHHhhCCCc-EEEEcc-CC-CC--CCCCCCCHHHHHHHHHHHHHCCCe
Confidence 455668899999999999999998743 444233 23 21 123557788888999988888875
No 140
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.12 E-value=3.5e-09 Score=100.95 Aligned_cols=188 Identities=20% Similarity=0.309 Sum_probs=131.2
Q ss_pred EEEEeeccCCCCC----CcCcccCCCCCCCCCCchhHHHHHHHHHhCCCcEEEEec--------cCC--CCCCCCcHHHH
Q 018731 104 ATIMLLGDTCTRG----CRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTS--------VDR--DDIPDGGSGHF 169 (351)
Q Consensus 104 ~~~i~~s~gC~~~----C~FC~~~~~~~~~~~~~eei~~~~~~~~~~G~~~I~ltg--------g~~--~~l~~~~~~~~ 169 (351)
..=+.+.+||+.. |+||.-+....+..++++.+.++++++.+.|++++-|.= +++ ...+.-+.+.+
T Consensus 184 i~EiETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPeal 263 (560)
T COG1031 184 ICEIETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEAL 263 (560)
T ss_pred EEEEeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHHHH
Confidence 3445689999976 999998765223346678999999999999999875521 110 01223346889
Q ss_pred HHHHHHHHHhCCCcE-EEE--eecCCC-----CCHHHHHHHHHcC--CCeeecchhchHHH-HhhhcCCCCCHHHHHHHH
Q 018731 170 ARTVKAMKKQKPDIM-VEC--LTSDFR-----GDLRAVETLVHSG--LDVFAHNIETVKRL-QRIVRDPRAGYEQSLEVL 238 (351)
Q Consensus 170 ~~li~~ik~~~p~i~-i~~--~~~~~~-----~~~e~l~~L~~aG--~~~i~~~ies~~~~-~~~~r~~~~~~~~~l~~i 238 (351)
.++.+-|+...|++. +++ ..|..+ -+.+.++.+.+.| =|...+|+||+|+. .+.+. -..+.++.++++
T Consensus 264 ekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~Nn-L~~spEEvl~AV 342 (560)
T COG1031 264 EKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNN-LNASPEEVLEAV 342 (560)
T ss_pred HHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhcc-ccCCHHHHHHHH
Confidence 999999999888864 332 112111 1357788888886 46678999999884 45443 357999999999
Q ss_pred HHHHHhCC-----CCe---EEEeeeeeC-CCCHHHHHHHHHHHHhC---C--CCEEeeeccc-CC-CCCc
Q 018731 239 KHAKLSKK-----GLI---TKSSIMLGL-GESDDDLKEAMADLRSI---D--VDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 239 ~~~~~~~~-----Gi~---v~~~~IvGl-gEt~e~~~~~l~~l~~l---g--~d~i~i~~~l-~P-Tp~~ 292 (351)
+.+.+... |+. -..+|++|| |||.|.+.-..++|+++ | +..|++-|.+ -| ||+.
T Consensus 343 ~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~ 412 (560)
T COG1031 343 EIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMW 412 (560)
T ss_pred HHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchh
Confidence 99887542 343 377899999 99999999988888874 3 3445554433 36 8876
No 141
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=98.99 E-value=3.2e-08 Score=89.50 Aligned_cols=201 Identities=13% Similarity=0.133 Sum_probs=128.3
Q ss_pred eccCCCCCCcCcccCCCC--C-CCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEE
Q 018731 109 LGDTCTRGCRFCAVKTSR--N-PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV 185 (351)
Q Consensus 109 ~s~gC~~~C~FC~~~~~~--~-~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i 185 (351)
.-.||+++|.||...... + ....+++++.++++.+.+.|++.|-+.||+|+ +. ...+.+.++.+... +.+
T Consensus 124 FFsgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Pt--p~--lp~Ile~l~~~~~~---iPv 196 (335)
T COG1313 124 FFSGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPT--PH--LPFILEALRYASEN---IPV 196 (335)
T ss_pred EecCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCC--Cc--hHHHHHHHHHHhcC---CCE
Confidence 457999999999876522 1 23467888888888999999999999999974 32 46777777776665 444
Q ss_pred EEeecCCCCCHHHHHHHHHcCCCeeecchhchHHH-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHH
Q 018731 186 ECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDD 264 (351)
Q Consensus 186 ~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~-~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~ 264 (351)
-..+ ++..++|.++.|-.. +|.+--.+.=+++. -.++.+-+.-++-+.+++..+.+...|+-+..-++.|+-| .-
T Consensus 197 vwNS-nmY~s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVlPghle--cC 272 (335)
T COG1313 197 VWNS-NMYMSEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVLPGHLE--CC 272 (335)
T ss_pred EEec-CCccCHHHHHHhhcc-ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEecCCchh--hc
Confidence 3333 455699999987643 55332233333332 2333312234555666777776633357777777777522 21
Q ss_pred HHHHHHHHHhCCCCE--EeeecccCCCCCc---ccccCCCCHHHHHHHHHHHHhcCcceec
Q 018731 265 LKEAMADLRSIDVDI--LTLGQYLQPTPLH---LTVKEYVTPEKFDFWKAYGESIGFRYVA 320 (351)
Q Consensus 265 ~~~~l~~l~~lg~d~--i~i~~~l~PTp~~---~~~~~~v~~~e~~~~~~~~~~~G~~~~~ 320 (351)
-...++|+.+.-.+. ++++.-.+|+-.+ ......++.+|+++..+++++.||.+..
T Consensus 273 TkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~~~ 333 (335)
T COG1313 273 TKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTNIL 333 (335)
T ss_pred cHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhcccCCHHHHHHHHHHHHHcCCceee
Confidence 456778887765433 3443222563222 2345678999999999999999998653
No 142
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=98.94 E-value=4e-08 Score=89.34 Aligned_cols=134 Identities=11% Similarity=0.083 Sum_probs=91.9
Q ss_pred eeEEEEeeccCCCCCCcCcccCCCC--CC----CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHH
Q 018731 102 ATATIMLLGDTCTRGCRFCAVKTSR--NP----APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKA 175 (351)
Q Consensus 102 ~~~~~i~~s~gC~~~C~FC~~~~~~--~~----~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ 175 (351)
...++.+-+.|||.+|.||...... .. ..++.+++.+.++.+...|++.|+||||+|. +. +.+.++++.
T Consensus 21 G~~~~FvR~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPl-l~----~~l~~li~~ 95 (238)
T TIGR03365 21 GQKTMFVRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPA-LQ----KPLGELIDL 95 (238)
T ss_pred CCeEEEEEeCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchh-hh----HhHHHHHHH
Confidence 3667777789999999999976521 11 1256678888777766667899999999973 32 578999999
Q ss_pred HHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee
Q 018731 176 MKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM 255 (351)
Q Consensus 176 ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I 255 (351)
+++. ++.+.+.|++.. ..+ .+.+ +|.+.+++...+. +....++...++++.+.+ |..+..-++
T Consensus 96 l~~~--g~~v~leTNGtl-~~~---~l~~--~d~v~vs~K~~~s------g~~~~~~~~~~~ik~l~~---~~~~~vK~V 158 (238)
T TIGR03365 96 GKAK--GYRFALETQGSV-WQD---WFRD--LDDLTLSPKPPSS------GMETDWQALDDCIERLDD---GPQTSLKVV 158 (238)
T ss_pred HHHC--CCCEEEECCCCC-cHH---HHhh--CCEEEEeCCCCCC------CCCCcHHHHHHHHHHhhh---cCceEEEEE
Confidence 9986 566666666654 333 2333 5677777665433 112357777788887765 466777777
Q ss_pred ee
Q 018731 256 LG 257 (351)
Q Consensus 256 vG 257 (351)
++
T Consensus 159 v~ 160 (238)
T TIGR03365 159 VF 160 (238)
T ss_pred EC
Confidence 76
No 143
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.89 E-value=3.6e-07 Score=86.99 Aligned_cols=199 Identities=13% Similarity=0.135 Sum_probs=126.9
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh-----------------CCCcEEEEec-cCCCCCCCCcHHHH
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-----------------WGVDYIVLTS-VDRDDIPDGGSGHF 169 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~-----------------~G~~~I~ltg-g~~~~l~~~~~~~~ 169 (351)
...-||+.+|.||+-....-.+.++..||.+.+..+.+ ..++.|+|.| |+| |.+ ++.+
T Consensus 112 SSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEP--L~N--ydnV 187 (371)
T PRK14461 112 STQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEP--FAN--YDRW 187 (371)
T ss_pred EccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCc--hhh--HHHH
Confidence 46889999999998766443455788888777765432 1266777765 665 432 5666
Q ss_pred HHHHHHHHHhC-CCc---EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHH
Q 018731 170 ARTVKAMKKQK-PDI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHA 241 (351)
Q Consensus 170 ~~li~~ik~~~-p~i---~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~ 241 (351)
.+.++.+.... -++ +|++.|.+. .+.++.|.+-+.. .+.+++-+.++ .++.+- .+++..++.+++++..
T Consensus 188 ~~ai~il~d~~g~~is~R~ITVST~Gi---vp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y 264 (371)
T PRK14461 188 WQAVERLHDPQGFNLGARSMTVSTVGL---VKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDY 264 (371)
T ss_pred HHHHHHhcCccccCcCCCceEEEeecc---hhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 66666665421 122 466655542 3567777776543 35667766544 443222 1267999999998877
Q ss_pred HHhCCCCeEEE--eeeeeCCCCHHHHHHHHHHHHhCC-----CCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhc
Q 018731 242 KLSKKGLITKS--SIMLGLGESDDDLKEAMADLRSID-----VDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 242 ~~~~~Gi~v~~--~~IvGlgEt~e~~~~~l~~l~~lg-----~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
.+. .|=++.. -+|=|+.++.|+..+..++++.++ .-+|.+-+| .|++.. .....+.+....+.+.++..
T Consensus 265 ~~~-t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~-Np~~~~--~~~~ps~~~i~~F~~~L~~~ 340 (371)
T PRK14461 265 IAK-TRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPW-NPVPGT--PLGRSERERVTTFQRILTDY 340 (371)
T ss_pred HHh-hCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecC-CCCCCC--CCCCCCHHHHHHHHHHHHHC
Confidence 531 4544433 445577999999999999999872 124555333 454332 12345778888999999888
Q ss_pred Ccc
Q 018731 315 GFR 317 (351)
Q Consensus 315 G~~ 317 (351)
|..
T Consensus 341 gi~ 343 (371)
T PRK14461 341 GIP 343 (371)
T ss_pred Cce
Confidence 875
No 144
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.87 E-value=8.5e-08 Score=88.03 Aligned_cols=197 Identities=15% Similarity=0.209 Sum_probs=125.3
Q ss_pred eEEEEeec--cCCCCCCcCcccCCCCCCC--C--C---Cch--hHHHHHHHHHh--CCCcEEEEeccCCCCCCCCcHHHH
Q 018731 103 TATIMLLG--DTCTRGCRFCAVKTSRNPA--P--P---DPM--EPENTAKAIAS--WGVDYIVLTSVDRDDIPDGGSGHF 169 (351)
Q Consensus 103 ~~~~i~~s--~gC~~~C~FC~~~~~~~~~--~--~---~~e--ei~~~~~~~~~--~G~~~I~ltgg~~~~l~~~~~~~~ 169 (351)
+.+++..+ .+|..+|.||.+..+.... . + ... .+.+..+.+.. ...+.|.++-...+.. ..++
T Consensus 29 ~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~~p~~----~~d~ 104 (339)
T COG2516 29 TTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIAYPRA----LNDL 104 (339)
T ss_pred ceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhcccccccceeeccccc----cchh
Confidence 45555555 9999999999987643111 1 1 111 12222333322 2366777754432211 2356
Q ss_pred HHHHHHHH-HhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhh-c--CCCCCHHHHHHHHHHHHHh
Q 018731 170 ARTVKAMK-KQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIV-R--DPRAGYEQSLEVLKHAKLS 244 (351)
Q Consensus 170 ~~li~~ik-~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~-r--~~~~~~~~~l~~i~~~~~~ 244 (351)
..+++.++ ...-.++|.-+..+.. ..+.+...++.|.+.+.+.++.++. .++.+ + +..+++++.++.++++.++
T Consensus 105 ~~i~~~~~~~~~~~itiseci~~~~-~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~ 183 (339)
T COG2516 105 KLILERLHIRLGDPITISECITAVS-LKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEA 183 (339)
T ss_pred hhhhhhhhhccCCceehhhhhhccc-chHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 66677666 3222244431122221 2788899999999999998888765 44433 2 1237899999999999988
Q ss_pred CCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCcccccCCCCHHHHHHHH
Q 018731 245 KKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWK 308 (351)
Q Consensus 245 ~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~~~~ 308 (351)
+..-.+.+++|+|+||++.++.+++..+.+.|.. ++++.| .| |.+. ....++.+.|.+..
T Consensus 184 ~~k~rv~ihliVglGesD~~~ve~~~~v~~~g~~-v~Lfaf-~P~~gt~me--~r~~~pve~Yrk~q 246 (339)
T COG2516 184 FGKGRVGIHLIVGLGESDKDIVETIKRVRKRGGI-VSLFAF-TPLKGTQME--NRKPPPVERYRKIQ 246 (339)
T ss_pred hccCCcceeEEeccCCchHHHHHHHHHHHhcCce-EEEEEe-ccccccccc--CCCCCcHHHHHHHH
Confidence 7657799999999999999999999999999874 455333 46 4433 45566667776644
No 145
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.79 E-value=3.7e-07 Score=83.95 Aligned_cols=173 Identities=15% Similarity=0.227 Sum_probs=115.8
Q ss_pred eEEEEeeccCCCC----CCcCcccCCCCCCCCCCchhHHHHHHHHHh-C---CCc-EE-EEeccCCCCCCCC--cHHHHH
Q 018731 103 TATIMLLGDTCTR----GCRFCAVKTSRNPAPPDPMEPENTAKAIAS-W---GVD-YI-VLTSVDRDDIPDG--GSGHFA 170 (351)
Q Consensus 103 ~~~~i~~s~gC~~----~C~FC~~~~~~~~~~~~~eei~~~~~~~~~-~---G~~-~I-~ltgg~~~~l~~~--~~~~~~ 170 (351)
..+++.-|.||.. +|.+|+++........+.+++.+..+.+.. . +-. -| +||+|.- |.+. ..+.-.
T Consensus 47 ~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSF--LD~~EVP~e~R~ 124 (358)
T COG1244 47 SLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSF--LDPEEVPREARR 124 (358)
T ss_pred eEEEEEecCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEccccc--CChhhCCHHHHH
Confidence 5556666999983 499999987533344556777666665432 2 122 24 5788863 3211 124455
Q ss_pred HHHHHHHHhC--CCcEEEEeecCCCCCHHHHHHHHHc--CCC-eeecchhchHH-HH-hhhcCCCCCHHHHHHHHHHHHH
Q 018731 171 RTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLVHS--GLD-VFAHNIETVKR-LQ-RIVRDPRAGYEQSLEVLKHAKL 243 (351)
Q Consensus 171 ~li~~ik~~~--p~i~i~~~~~~~~~~~e~l~~L~~a--G~~-~i~~~ies~~~-~~-~~~r~~~~~~~~~l~~i~~~~~ 243 (351)
.+++.|.+.. -.+-++. .|++. ++|.++.+.+. |.. .|.+|+||.++ .+ ..+. ++.++++++++++.+++
T Consensus 125 ~Il~~is~~~~v~~vvvES-RpE~I-~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sIN-KGftF~df~~A~~~ir~ 201 (358)
T COG1244 125 YILERISENDNVKEVVVES-RPEFI-REERLEEITEILEGKIVEVAIGLETANDKIREDSIN-KGFTFEDFVRAAEIIRN 201 (358)
T ss_pred HHHHHHhhccceeEEEeec-Cchhc-CHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhh-cCCcHHHHHHHHHHHHH
Confidence 6667777651 1223333 46775 89999999987 544 37899999876 43 3444 58999999999999999
Q ss_pred hCCCCeEEEeeeeeC-----CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 244 SKKGLITKSSIMLGL-----GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 244 ~~~Gi~v~~~~IvGl-----gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.|+.+.+.+++-. .|..+|+..++. ...-+.|.+++.
T Consensus 202 --~g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSin 243 (358)
T COG1244 202 --YGAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISIN 243 (358)
T ss_pred --cCCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEec
Confidence 9999999998755 345566666666 455678888883
No 146
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.75 E-value=7.6e-07 Score=83.16 Aligned_cols=175 Identities=18% Similarity=0.233 Sum_probs=110.3
Q ss_pred EEEeeccCCCCCCcCcccCCCCCCC-----CCCchh-HHHHHHH-HHhCCCc--EEEEeccCCCCCCCCcHHHHH-HHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRNPA-----PPDPME-PENTAKA-IASWGVD--YIVLTSVDRDDIPDGGSGHFA-RTVK 174 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~~~-----~~~~ee-i~~~~~~-~~~~G~~--~I~ltgg~~~~l~~~~~~~~~-~li~ 174 (351)
.-++.-.||.+.|.||+........ ....++ +.+.++. +.+.+.+ .|.+++.+.+..+......+. .+++
T Consensus 31 y~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ile 110 (297)
T COG1533 31 YTLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILE 110 (297)
T ss_pred eecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHHH
Confidence 3456789999999999987533211 123333 5555543 3333443 455555543333421112222 3333
Q ss_pred HHHHhCCCcEEEEeecC--CCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 018731 175 AMKKQKPDIMVECLTSD--FRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 175 ~ik~~~p~i~i~~~~~~--~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (351)
.+.+. +..+.+.|-. ...|-+.+..+++-+.-.|.+++-|.++ +.+.+=....+.++++++++.+.+ +|+.+.
T Consensus 111 i~~~~--~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~e--aGi~~~ 186 (297)
T COG1533 111 ILLKY--GFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSE--AGIPVG 186 (297)
T ss_pred HHHHc--CCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHH--CCCeEE
Confidence 33443 4455554432 2235577777777776678888888765 556554224589999999999999 999876
Q ss_pred EeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 252 ~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
..+--=+ +.|++++.+.+..+.+.|+..+..+
T Consensus 187 v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~ 219 (297)
T COG1533 187 LFVAPIIPGLNDEELERILEAAAEAGARVVVYG 219 (297)
T ss_pred EEEecccCCCChHHHHHHHHHHHHcCCCeeEee
Confidence 6653333 7788999999999999999987763
No 147
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=98.72 E-value=6.1e-07 Score=81.52 Aligned_cols=173 Identities=16% Similarity=0.249 Sum_probs=112.6
Q ss_pred eccCCCCCCcCcccCCCCC-C-CCCCchhHHHHHHHHHhC-CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh--CCC-
Q 018731 109 LGDTCTRGCRFCAVKTSRN-P-APPDPMEPENTAKAIASW-GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ--KPD- 182 (351)
Q Consensus 109 ~s~gC~~~C~FC~~~~~~~-~-~~~~~eei~~~~~~~~~~-G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~--~p~- 182 (351)
.||.|-++|.||....+.. + .+.+++|+.+..-.+.+. =+..++|++|--. -+|...+.+.++++.++-. +-|
T Consensus 60 lTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~-~~DyTmE~mi~var~LRle~~f~GY 138 (404)
T COG4277 60 LTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVIK-NPDYTMEEMIEVARILRLEHKFRGY 138 (404)
T ss_pred HhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheecccccc-CcchHHHHHHHHHHHHhhccccCcE
Confidence 6999999999999866542 2 347889988776655543 4677888887521 1332356677777666532 222
Q ss_pred cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHh------------C-CCC
Q 018731 183 IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLS------------K-KGL 248 (351)
Q Consensus 183 i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~------------~-~Gi 248 (351)
+++.+ .|+. +++.++..-.. +|++++|+|...+ -.+.+. |..++-++++.+..++.. . +-+
T Consensus 139 IHlK~-IPga--s~~li~eagly-adRvSiNIElp~~~~lk~la-p~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~f 213 (404)
T COG4277 139 IHLKI-IPGA--SPDLIKEAGLY-ADRVSINIELPTDDGLKLLA-PEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEF 213 (404)
T ss_pred EEEEe-cCCC--CHHHHHHHhhh-hheeEEeEecCCcchhhhhC-CCCChHHHHHHHHHHHHHHhhcccchhhhccCccc
Confidence 34443 3432 66666554443 7999999998654 234444 556666776666655530 0 112
Q ss_pred e---EEEeeeeeC-CCCHHHHHHHHHHHH-hCCCCEEeeecccCC
Q 018731 249 I---TKSSIMLGL-GESDDDLKEAMADLR-SIDVDILTLGQYLQP 288 (351)
Q Consensus 249 ~---v~~~~IvGl-gEt~e~~~~~l~~l~-~lg~d~i~i~~~l~P 288 (351)
. -++.+|+|- |||++++...-..+. ..++..|.++.|. |
T Consensus 214 apaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~-P 257 (404)
T COG4277 214 APAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFS-P 257 (404)
T ss_pred cCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeeccc-c
Confidence 1 368899999 999999999888875 4788888886554 6
No 148
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=98.67 E-value=3.3e-08 Score=88.17 Aligned_cols=168 Identities=19% Similarity=0.244 Sum_probs=115.1
Q ss_pred EeeccCCCCCCcCcccCCCCC--C--CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC
Q 018731 107 MLLGDTCTRGCRFCAVKTSRN--P--APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD 182 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~--~--~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~ 182 (351)
+..+..|+.+|.||-...++. + .-+...+++.+++.+...|++.+-|+||++.-. .++.+++..+.. +|+
T Consensus 15 islte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr-----~di~~i~~g~~~-l~g 88 (323)
T KOG2876|consen 15 ISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIR-----QDIVPIVAGLSS-LPG 88 (323)
T ss_pred hhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCccc-----ccccchhhhhhc-ccc
Confidence 456999999999999887652 2 124557899999999999999999999997422 244555555554 345
Q ss_pred cE-EEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHH-H-hhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeC
Q 018731 183 IM-VECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL-Q-RIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGL 258 (351)
Q Consensus 183 i~-i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~-~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGl 258 (351)
+. +.+ ++++..+...+-.+.++|++.+++++++..+- . ...+ +..+..+...++.+.+ .|.. +.++..+--
T Consensus 89 Lks~~I-Ttng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~r--r~g~v~V~~~iq~a~~--lgy~pvkvn~v~~k 163 (323)
T KOG2876|consen 89 LKSIGI-TTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTR--RKGFVKVWASIQLAIE--LGYNPVKVNCVVMK 163 (323)
T ss_pred hhhhce-eccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhh--hccHHHHHHHHhHHhh--hCCCCcceeeEEEe
Confidence 43 222 34444566788889999999999999998662 3 4454 6789999999999987 5653 444444311
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 259 GESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 259 gEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
|-+.+++.+....-+..++|...+ .|+
T Consensus 164 ~~n~~ev~Dfv~~tr~~p~DVrfI-e~m 190 (323)
T KOG2876|consen 164 GLNEDEVFDFVLLTRMRPLDVRFI-EFM 190 (323)
T ss_pred ccCCCcccceeeecCCCCcceEEE-Eec
Confidence 444455666555556666776555 354
No 149
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.62 E-value=1e-06 Score=83.91 Aligned_cols=147 Identities=18% Similarity=0.260 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhCCC--cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HH-hhhcCCCCCHHHHHHHHHHHH
Q 018731 167 GHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQ-RIVRDPRAGYEQSLEVLKHAK 242 (351)
Q Consensus 167 ~~~~~li~~ik~~~p~--i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~-~~~r~~~~~~~~~l~~i~~~~ 242 (351)
.++.+.++..+.++++ +++.-.+..+..+....+.+.++|++.+++++-|.++ ++ ++++ ....++.++.+++..
T Consensus 94 p~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~--n~~A~~~le~L~~f~ 171 (414)
T COG1625 94 PDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMK--NPNAEQLLELLRRFA 171 (414)
T ss_pred cchhhhhhHHHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhc--CCcHHHHHHHHHHHH
Confidence 4778888888887633 5555434445456778888999999999999999876 55 6776 568888999999999
Q ss_pred HhCCCCeEEEeeeeeCCCC-HHHHHHHHHHHHhCCCCEEeeecccCC---CCCcccccCCCCHHHHHHHHHH----HHhc
Q 018731 243 LSKKGLITKSSIMLGLGES-DDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWKAY----GESI 314 (351)
Q Consensus 243 ~~~~Gi~v~~~~IvGlgEt-~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~~~~~~----~~~~ 314 (351)
+ .++.+.+.+++--|-+ -+++.+|+..|.++|++.+.++. ..| |....+.....+++++++++++ .+++
T Consensus 172 ~--~~~~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~-~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E~ 248 (414)
T COG1625 172 E--RCIEVHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILMR-VVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDREL 248 (414)
T ss_pred H--hhhheeeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeEEE-eecceeeecCCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 8 8899999998866777 89999999999999999877753 347 6555445567788888776554 4556
Q ss_pred C-cce
Q 018731 315 G-FRY 318 (351)
Q Consensus 315 G-~~~ 318 (351)
| |+-
T Consensus 249 ~~~~V 253 (414)
T COG1625 249 GSIRV 253 (414)
T ss_pred CceEE
Confidence 7 654
No 150
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.61 E-value=3.2e-06 Score=79.25 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=112.1
Q ss_pred eeeEEEEeeccCCCCCCcCcccCCCCCC--CCCCchhHHHHHHHHHhC-CCcEEEEeccCCCCCCCCcHHHHHHHHHHHH
Q 018731 101 IATATIMLLGDTCTRGCRFCAVKTSRNP--APPDPMEPENTAKAIASW-GVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (351)
Q Consensus 101 ~~~~~~i~~s~gC~~~C~FC~~~~~~~~--~~~~~eei~~~~~~~~~~-G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik 177 (351)
+..+..+..+.+|+..|+||.-...-+. .....+++...++.+++. -+.+|.||||+|-.+++ ..+..+++.++
T Consensus 109 Y~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls~---~~L~~ll~~L~ 185 (369)
T COG1509 109 YPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSGGDPLSLSD---KKLEWLLKRLR 185 (369)
T ss_pred cCCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecCCCccccCH---HHHHHHHHHHh
Confidence 3467888899999999999986653222 124567787777777664 48899999999866664 67888888888
Q ss_pred HhCCCc---EEEEeecC---CCCCHHHHHHHHHcCCCee-ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 018731 178 KQKPDI---MVECLTSD---FRGDLRAVETLVHSGLDVF-AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (351)
Q Consensus 178 ~~~p~i---~i~~~~~~---~~~~~e~l~~L~~aG~~~i-~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (351)
+. |-+ +|..-.|- ...+++..+.|.+.+.... ...++..++ =-.+..++++++++ +|+.+
T Consensus 186 ~I-pHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~E----------it~e~~~A~~~L~~--aGv~l 252 (369)
T COG1509 186 AI-PHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNE----------ITPEAREACAKLRD--AGVPL 252 (369)
T ss_pred cC-CceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChhh----------cCHHHHHHHHHHHH--cCcee
Confidence 75 332 33321121 2357888888888654322 112222222 22355678888888 99985
Q ss_pred EE--eeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 251 KS--SIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 251 ~~--~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.. -++=|.+++.+-+.+.++.+.++|+.--.+
T Consensus 253 ~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl 286 (369)
T COG1509 253 LNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYL 286 (369)
T ss_pred ecchheecccCCCHHHHHHHHHHHHHcCCcceEE
Confidence 43 345588999999999999999999754333
No 151
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=98.59 E-value=1.1e-07 Score=78.83 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=51.0
Q ss_pred EeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCc
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI 183 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i 183 (351)
+..+.+|+.+|.||..+..... ..++.+.+.+.++.+...++..|.|+||+|. +. ...+.+.++++.+++..+ .
T Consensus 9 ~~~t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEPl-l~-~~~~~l~~i~~~~k~~~~-~ 85 (139)
T PF13353_consen 9 VLFTNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEPL-LH-ENYDELLEILKYIKEKFP-K 85 (139)
T ss_dssp EEEEC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTGG-GH-HSHHHHHHHHHHHHHTT--S
T ss_pred EEEcCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCCee-ee-ccHhHHHHHHHHHHHhCC-C
Confidence 3348889999999987664421 1233455566667777789999999999973 41 114899999999999875 2
Q ss_pred EEEEeecCC
Q 018731 184 MVECLTSDF 192 (351)
Q Consensus 184 ~i~~~~~~~ 192 (351)
.+.+.+++.
T Consensus 86 ~~~~~tng~ 94 (139)
T PF13353_consen 86 KIIILTNGY 94 (139)
T ss_dssp EEEEEETT-
T ss_pred CeEEEECCC
Confidence 444445554
No 152
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=98.55 E-value=7.4e-06 Score=75.41 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=113.5
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.++.++..+.++.+.+.|++.|-++++.++... ...+...++++.+++..++..+.++.+.. .+.++.++++|++.
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~---~~~i~~a~~~g~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNR---EKGIERALEAGVDE 90 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCc---hhhHHHHHhCCcCE
Confidence 357789999999999999999999988763110 01135677888888876677776655432 68899999999999
Q ss_pred eecchhchHHHH--hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC--CCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRLQ--RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG--ESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~~--~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg--Et~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+.+.+... +..+++...+++.++.++.+++ .|+.+..+++.-.+ .+.+++.+.++.+.++|++.+.+
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~--~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKE--AGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 998776554321 2122223478899999999999 99999888876667 99999999999999999998887
No 153
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=98.55 E-value=9e-08 Score=77.26 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=46.8
Q ss_pred eccCCCCCCcCcccCCCCC---CCCCCchhHHHHHHHHHhCCC--cEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCc
Q 018731 109 LGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWGV--DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI 183 (351)
Q Consensus 109 ~s~gC~~~C~FC~~~~~~~---~~~~~~eei~~~~~~~~~~G~--~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i 183 (351)
.+.+||.+|.||....... ....+.+++.+.++.+...+. ..|.|+||+|....+ .+.+.++++.+++..|+.
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~~--~~~l~~~i~~~~~~~~~~ 81 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLYLN--PEDLIELIEYLKERGPEI 81 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGGSTT--HHHHHHHHCTSTT-----
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCccccC--HHHHHHHHHHHHhhCCCc
Confidence 5899999999999754321 122455677788877777766 579999999732132 578999999999987778
Q ss_pred EEEEeecCCC
Q 018731 184 MVECLTSDFR 193 (351)
Q Consensus 184 ~i~~~~~~~~ 193 (351)
.+.+.|++..
T Consensus 82 ~i~i~TNg~~ 91 (119)
T PF13394_consen 82 KIRIETNGTL 91 (119)
T ss_dssp EEEEEE-STT
T ss_pred eEEEEeCCee
Confidence 8887777554
No 154
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.53 E-value=1.4e-06 Score=73.16 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=99.0
Q ss_pred ccCCCCCCcCcccCCCCCC-----CCCCchhHHHHHHH-HHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCc
Q 018731 110 GDTCTRGCRFCAVKTSRNP-----APPDPMEPENTAKA-IASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI 183 (351)
Q Consensus 110 s~gC~~~C~FC~~~~~~~~-----~~~~~eei~~~~~~-~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i 183 (351)
+-||+..|.||.....+.. .-++|+|+.+-..+ ..+.|.+-+-++|++|. +. .+++.++|+.+-+ -
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP~-l~---~EHvlevIeLl~~----~ 119 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEPI-LG---REHVLEVIELLVN----N 119 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCcc-cc---HHHHHHHHHhccC----c
Confidence 6799999999987543211 12567776554444 35689999999999973 43 4899999987743 3
Q ss_pred EEEEeecCCCC--CHHHHHHHHHcCCCeeecchhchHH-HHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-
Q 018731 184 MVECLTSDFRG--DLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGL- 258 (351)
Q Consensus 184 ~i~~~~~~~~~--~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl- 258 (351)
++-+-|++.++ |...++.|...---.|-+++...++ .+.++++- ..-+..-+++++.+.+ .|+.+..-++.+|
T Consensus 120 tFvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~--~g~rf~pA~~~~f~ 197 (228)
T COG5014 120 TFVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHG--KGHRFWPAVVYDFF 197 (228)
T ss_pred eEEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHh--cCceeeehhhhccc
Confidence 44444555433 7888888876422234456666554 23333311 1236677899999998 9999888889888
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 018731 259 GESDDDLKEAMADLRSID 276 (351)
Q Consensus 259 gEt~e~~~~~l~~l~~lg 276 (351)
.|. ...+....+-+.+
T Consensus 198 ~Ed--~~k~Lak~Lgehp 213 (228)
T COG5014 198 RED--GLKELAKRLGEHP 213 (228)
T ss_pred hhh--hHHHHHHHhccCC
Confidence 332 2223444554544
No 155
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=98.39 E-value=4.4e-06 Score=70.12 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=67.6
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCC---CCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~---~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
..+++....|||.+|.||..+.... ..+++.+++.+.++... ..+..|+||||+ +. .+.+.++++.+++.
T Consensus 15 ~~~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE---l~---~~~l~~ll~~lk~~ 87 (147)
T TIGR02826 15 EYSLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE---WN---REALLSLLKIFKEK 87 (147)
T ss_pred CEEEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh---cC---HHHHHHHHHHHHHC
Confidence 4566777889999999999886432 23466777777776654 246789999999 32 47899999999987
Q ss_pred CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
++.+.+.|+ +. .++..+.+.+. +|.+..+
T Consensus 88 --Gl~i~l~Tg-~~-~~~~~~~il~~-iD~l~~g 116 (147)
T TIGR02826 88 --GLKTCLYTG-LE-PKDIPLELVQH-LDYLKTG 116 (147)
T ss_pred --CCCEEEECC-CC-CHHHHHHHHHh-CCEEEEC
Confidence 556655554 32 44444455443 6766554
No 156
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.36 E-value=4.8e-05 Score=71.76 Aligned_cols=198 Identities=17% Similarity=0.212 Sum_probs=121.7
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh-CC------CcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-WG------VDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~-~G------~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
...-||+.+|+||+.......+.++..||.+.+..+.+ .| +..|++-| |+| +.+ ++.+...++.+...
T Consensus 106 SsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEP--l~N--~dnV~~a~~i~~~~ 181 (349)
T COG0820 106 SSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEP--LLN--LDNVVKALEIINDD 181 (349)
T ss_pred ecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCch--hhh--HHHHHHHHHhhcCc
Confidence 46889999999999877543455778888877766542 22 44666655 665 432 66777777766643
Q ss_pred -CCCc---EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhh-hc-CCCCCHHHHHHHHHHHHHhCCCCeEE
Q 018731 180 -KPDI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRI-VR-DPRAGYEQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 180 -~p~i---~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~-~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (351)
..++ ++++.|.+. . +.+..+.+-.++ .+.+++-+.++ .++. +. .+..+.++.+++++.-.+. .|-.|+
T Consensus 182 ~G~~ls~R~iTvSTsGi--~-~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~-t~~rVt 257 (349)
T COG0820 182 EGLGLSKRRITVSTSGI--V-PRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEK-SGRRVT 257 (349)
T ss_pred ccccccceEEEEecCCC--c-hhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhc-cCceEE
Confidence 2233 345555442 2 455666643233 35667766554 3322 21 1256888999988877542 354444
Q ss_pred E--eeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcc
Q 018731 252 S--SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (351)
Q Consensus 252 ~--~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~ 317 (351)
- .++=|..+..++..+.+++++.+.. +|.+-+| .|+|.. .....+.++...+.+.+...|+.
T Consensus 258 ~EY~Ll~~VND~~e~A~~L~~ll~~~~~-~VNLIP~-Np~~~~--~y~r~~~~~i~~F~~~L~~~gv~ 321 (349)
T COG0820 258 FEYVLLDGVNDSLEHAKELAKLLKGIPC-KVNLIPY-NPVPGS--DYERSSKERIRKFLKILKKAGVL 321 (349)
T ss_pred EEeeecccccCCHHHHHHHHHHhcCCCc-eEEEeec-CCCCCC--CccCCcHHHHHHHHHHHHhCCee
Confidence 3 3344668889999999999998877 4555333 454443 12345556677777777767765
No 157
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=98.24 E-value=7.1e-06 Score=69.52 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=54.8
Q ss_pred EeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHHHHHHhCCC--cEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIASWGV--DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~~~~~~~G~--~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p 181 (351)
.+...|||.+|.||..+..... ...+.+.+.+.++.+...+. ..|.|+||+|. +. .+.+.+.++++++++..+
T Consensus 20 ~if~~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEPl-~~-~~~~~l~~l~~~~k~~~~ 97 (154)
T PRK11121 20 TLFVSGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDPL-HP-QNVPDILKLVQRVKAECP 97 (154)
T ss_pred EEEcCCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHHHhCCCCCcEEEECCCcc-ch-hhHHHHHHHHHHHHHHCC
Confidence 3334999999999988764311 12333444455555555554 68999999972 32 235788899999998777
Q ss_pred CcEEEEeecCCC
Q 018731 182 DIMVECLTSDFR 193 (351)
Q Consensus 182 ~i~i~~~~~~~~ 193 (351)
+..|.+ .+++.
T Consensus 98 ~~~i~~-~tGy~ 108 (154)
T PRK11121 98 GKDIWV-WTGYK 108 (154)
T ss_pred CCCEEE-ecCCC
Confidence 766654 34543
No 158
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=98.23 E-value=8e-06 Score=69.22 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=51.1
Q ss_pred ccCCCCCCcCcccCCCCC---CCCCCchhHHHHHHHHHhCC-CcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 110 GDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 110 s~gC~~~C~FC~~~~~~~---~~~~~~eei~~~~~~~~~~G-~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
..|||.+|.||..+.... ...++.+++.++++.+.+.+ +..|.|+||+|. ...+.+.+.++++.+++..
T Consensus 22 ~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGGEPl--lq~~~~~l~~ll~~~k~~~ 94 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNPLIDGLTLSGGDPL--YPRNVEELIELVKKIKAEF 94 (154)
T ss_pred ECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeChhhC--CCCCHHHHHHHHHHHHHhC
Confidence 478999999999876431 23466666777777777665 678999999973 3223578999999999864
No 159
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=5.4e-05 Score=67.51 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=51.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHHHHHHh--CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIAS--WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~~~~~~--~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik 177 (351)
..++..=..|||.+|.+|........ ....+..+.+++..+.+ .+.+.|+||||+| .+. +.+.++++.++
T Consensus 22 r~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~~~~~V~lTGGEP-~~~----~~l~~Ll~~l~ 96 (212)
T COG0602 22 RPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGYKARGVSLTGGEP-LLQ----PNLLELLELLK 96 (212)
T ss_pred ceeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCCCcceEEEeCCcC-CCc----ccHHHHHHHHH
Confidence 44444456799999999997754321 11122333444444455 3566899999998 232 46888999998
Q ss_pred HhCCCcEEEEeec
Q 018731 178 KQKPDIMVECLTS 190 (351)
Q Consensus 178 ~~~p~i~i~~~~~ 190 (351)
+. ++.+.+-|+
T Consensus 97 ~~--g~~~~lETn 107 (212)
T COG0602 97 RL--GFRIALETN 107 (212)
T ss_pred hC--CceEEecCC
Confidence 86 566555444
No 160
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.80 E-value=0.00093 Score=65.09 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHcCCCeeecchhchHH-HH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCH-HHHHHHHH
Q 018731 194 GDLRAVETLVHSGLDVFAHNIETVKR-LQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESD-DDLKEAMA 270 (351)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~ies~~~-~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~-e~~~~~l~ 270 (351)
++++.+++..+.+++-+++++.+.++ ++ ++++ .....++++.++++.+ +||.+.+.+++--|-++ +++.+|+.
T Consensus 126 l~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~--n~~a~~il~~l~~l~~--~~I~~h~qiVlcPGiNDg~~L~~Ti~ 201 (433)
T TIGR03279 126 LPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLK--NPRAGLILEQLKWFQE--RRLQLHAQVVVCPGINDGKHLERTLR 201 (433)
T ss_pred CCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhC--CCCHHHHHHHHHHHHH--cCCeEEEEEEEcCCcCCHHHHHHHHH
Confidence 47888899999999999999998876 44 5555 3488999999999999 99999998877556555 78999999
Q ss_pred HHHhC
Q 018731 271 DLRSI 275 (351)
Q Consensus 271 ~l~~l 275 (351)
+|.++
T Consensus 202 dL~~~ 206 (433)
T TIGR03279 202 DLAQF 206 (433)
T ss_pred HHHhh
Confidence 99998
No 161
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=97.79 E-value=0.0006 Score=65.79 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=102.0
Q ss_pred cccCCCCC--CCCCCchhHHHHHHHHHhC---CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCc-EEEEeecCCC
Q 018731 120 CAVKTSRN--PAPPDPMEPENTAKAIASW---GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI-MVECLTSDFR 193 (351)
Q Consensus 120 C~~~~~~~--~~~~~~eei~~~~~~~~~~---G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i-~i~~~~~~~~ 193 (351)
|-+++... ..+.+.+++.+.++.+... +...|-++||+|+ ++ +++.++++..++. ++ +|...|++..
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPT-vr----~DL~eiv~~a~e~--g~~hVqinTnGir 150 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKEHPVGANAVQFTGGEPT-LR----DDLIEIIKIAREE--GYDHVQLNTNGIR 150 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhcCCCCCceeEecCCCcc-ch----hhHHHHHHHHhhc--CccEEEEccCcee
Confidence 65555332 2456678999999888764 4578999999974 65 6899999999987 44 7777776533
Q ss_pred --CCHHHHHHHHHcCCCeeecchhchHHH-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHH
Q 018731 194 --GDLRAVETLVHSGLDVFAHNIETVKRL-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEA 268 (351)
Q Consensus 194 --~~~e~l~~L~~aG~~~i~~~ies~~~~-~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~ 268 (351)
.+.+..+.|++||++.++++.+..++. +..+ .-++-.+++..++ .|+. +.-++.++ |-++.++-+.
T Consensus 151 lA~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~~------~~eIk~alen~r~--~g~~-svVLVptl~rgvNd~~lG~i 221 (475)
T COG1964 151 LAFDPEYVKKLREAGVNTVYLSFDGVTPKTNWKN------HWEIKQALENCRK--AGLP-SVVLVPTLIRGVNDHELGAI 221 (475)
T ss_pred eccCHHHHHHHHhcCCcEEEEecCCCCCCchhhH------hhhhHHHHHHHHh--cCCC-cEEEEeehhcccChHHHHHH
Confidence 468999999999999999998887663 3211 3334447788888 8875 33445566 8899999999
Q ss_pred HHHHHh
Q 018731 269 MADLRS 274 (351)
Q Consensus 269 l~~l~~ 274 (351)
+++..+
T Consensus 222 irfa~~ 227 (475)
T COG1964 222 IRFALN 227 (475)
T ss_pred HHHHHh
Confidence 999874
No 162
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=97.70 E-value=0.017 Score=53.28 Aligned_cols=141 Identities=21% Similarity=0.185 Sum_probs=98.4
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
..+.++..+.++.+.+.|++.|-+++ |. .. +...+.++.+.+......+.... ..+.+-++...++|++.
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~--P~-~~----~~~~~~~~~l~~~~~~~~v~~~~---r~~~~di~~a~~~g~~~ 87 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTS--PA-AS----PQSRADCEAIAKLGLKAKILTHI---RCHMDDARIAVETGVDG 87 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEC--CC-CC----HHHHHHHHHHHhCCCCCcEEEEe---cCCHHHHHHHHHcCcCE
Confidence 46678889999999999999998864 32 22 44556666665443222332221 23667899999999999
Q ss_pred eecchhchHHHH-hhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRLQ-RIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~~-~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+-+.+... ...+ .+....+...+.++.+++ .|+.+..++.-.++-+.+.+.+.++.+.+.|++.+.+
T Consensus 88 i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~--~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l 160 (262)
T cd07948 88 VDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKS--KGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGI 160 (262)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 887664444432 2121 112234556667788888 8999999998878777899999999999999998766
No 163
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=97.68 E-value=0.016 Score=53.33 Aligned_cols=141 Identities=16% Similarity=0.068 Sum_probs=99.7
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
..+.++..+.++.+.+.|++.|-++ .| .+. +.-.+.++.+.+..++..+.++.. .+.+.++...++|++.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g--~p-~~~----~~~~e~~~~l~~~~~~~~~~~~~r---~~~~~v~~a~~~g~~~ 85 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVG--IP-AMG----EEEREAIRAIVALGLPARLIVWCR---AVKEDIEAALRCGVTA 85 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--cC-CCC----HHHHHHHHHHHhcCCCCEEEEecc---CCHHHHHHHHhCCcCE
Confidence 4667889999999999999998774 22 232 222356777776555666655432 2567889999999999
Q ss_pred eecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+-+.+.. .+.++ .+....+...+.++.+++ .|+.+..+++.+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l 158 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKD--RGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRF 158 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 98866444432 22222 112234556678889999 9998887777665677999999999999999998776
No 164
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=97.62 E-value=0.013 Score=54.88 Aligned_cols=144 Identities=17% Similarity=0.259 Sum_probs=97.6
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCC-CCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD-IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~-l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
..++++..++++.+.+.|++.|=+++-..+. ++. ..+-.+.++.+.+ .++..+..+.+ +.+-++...++|++
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~--~~d~~e~~~~l~~-~~~~~~~~l~~----~~~~ie~A~~~g~~ 94 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQ--MADAAEVMAGIQR-RPGVTYAALTP----NLKGLEAALAAGAD 94 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccc--cccHHHHHHhhhc-cCCCeEEEEec----CHHHHHHHHHcCCC
Confidence 4677888999999999999999775332221 221 1122567777765 35666665543 56778999999999
Q ss_pred eeecchhchHHHH-hhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC---C---CHHHHHHHHHHHHhCCCCEE
Q 018731 209 VFAHNIETVKRLQ-RIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG---E---SDDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 209 ~i~~~ies~~~~~-~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg---E---t~e~~~~~l~~l~~lg~d~i 280 (351)
.|.+.+-+.+... +..+ .+....++..+.++.+++ .|+.+..++...++ + +.+.+.+.++.+.+.|++.+
T Consensus 95 ~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~--~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i 172 (287)
T PRK05692 95 EVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQ--AGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEI 172 (287)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 9988765544432 2222 011233456678888888 89988777765442 2 67888999999999999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 173 ~l 174 (287)
T PRK05692 173 SL 174 (287)
T ss_pred Ee
Confidence 77
No 165
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=97.54 E-value=0.021 Score=55.62 Aligned_cols=141 Identities=18% Similarity=0.103 Sum_probs=98.8
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
..+.++..++++.+.+.|++.|-+ |.| ... +.-.+.++.+.+......+.++.. ...+.++...++|++.
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~--G~p-~~~----~~~~e~i~~i~~~~~~~~i~~~~r---~~~~di~~a~~~g~~~ 91 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEA--GFP-AVS----EDEKEAIKAIAKLGLNASILALNR---AVKSDIDASIDCGVDA 91 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEE--eCC-CcC----hHHHHHHHHHHhcCCCeEEEEEcc---cCHHHHHHHHhCCcCE
Confidence 467788999999999999999877 333 233 233456777766544444444322 2467899999999999
Q ss_pred eecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+.+.+.. ...++ .+....+...+.++.+++ .|+.+..+..-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 92 i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~--~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l 164 (378)
T PRK11858 92 VHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKD--HGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRF 164 (378)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 98877665543 23332 011234445558888888 8999888777665677899999999999999998776
No 166
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=97.53 E-value=0.023 Score=55.06 Aligned_cols=141 Identities=15% Similarity=0.079 Sum_probs=98.7
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.++.++..++++.+.+.|++.|-++ .| ... +.=.+.++.+.+..++..+.++.. .+.+.++...++|++.
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG--~p-~~~----~~~~e~i~~i~~~~~~~~i~~~~r---~~~~di~~a~~~g~~~ 88 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVG--IP-AMG----EEERAVIRAIVALGLPARLMAWCR---ARDADIEAAARCGVDA 88 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--CC-CCC----HHHHHHHHHHHHcCCCcEEEEEcC---CCHHHHHHHHcCCcCE
Confidence 4677889999999999999998773 33 233 233466777776655656654432 2678899999999999
Q ss_pred eecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+-+.+.. ...++ .+....+...+.++.+++ .|+.+..+..-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 89 i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~--~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 161 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARD--RGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRF 161 (365)
T ss_pred EEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHh--CCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEE
Confidence 88876554442 23332 011233445578888898 8998877766655566888899999999999998766
No 167
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=97.48 E-value=0.017 Score=55.95 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=101.6
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
..+.++..++++.+.+.|++.|-++ .+ ..+ +.-.+.++.+.+..+...+..+.. ...+.++...++|++.
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG--~p-~~~----~~~~e~i~~i~~~~~~~~v~~~~r---~~~~di~~a~~~g~~~ 87 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAG--FP-IAS----EGEFEAIKKISQEGLNAEICSLAR---ALKKDIDKAIDCGVDS 87 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--CC-CCC----hHHHHHHHHHHhcCCCcEEEEEcc---cCHHHHHHHHHcCcCE
Confidence 4677899999999999999998773 32 122 233567777777655555554433 2578899999999999
Q ss_pred eecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+-+.+.. ...++ .+....+...+.++.+++ .|+.+..++.-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~--~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l 160 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE--HGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINI 160 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 88766554442 22332 112245677788999999 9999887776655667899999999999999998776
No 168
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=97.44 E-value=0.025 Score=52.31 Aligned_cols=141 Identities=18% Similarity=0.159 Sum_probs=99.6
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC---
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG--- 206 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG--- 206 (351)
..+.++..+.++.+.+.|++.|-+++.. .. .+.+ +.++.+.+..++..+.++... ..+.++...++|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~---~~---~~~~-~~~~~l~~~~~~~~~~~l~r~---~~~~v~~a~~~~~~~ 85 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPA---AS---PGDF-EAVKRIAREVLNAEICGLARA---VKKDIDAAAEALKPA 85 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC---CC---HHHH-HHHHHHHHhCCCCEEEEEccC---CHhhHHHHHHhCCCC
Confidence 4567888999999999999999885422 11 1233 677788776677777665532 456778888888
Q ss_pred -CCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 207 -LDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 207 -~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
++.|.+..-..+.. .+..+ .+....+...+.++.+++ .|+.+..+.+.+..-+.+.+.+.++.+.++|++.+.+
T Consensus 86 ~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l 162 (268)
T cd07940 86 KVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKS--HGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINI 162 (268)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 99887754333332 22222 112345667788999999 8998887776665667888899999999999998777
No 169
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=97.43 E-value=0.03 Score=51.65 Aligned_cols=136 Identities=15% Similarity=0.102 Sum_probs=94.9
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCC-----CC--CCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDR-----DD--IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETL 202 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~-----~~--l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L 202 (351)
..+.++..+.++.+.+.|++.|=++.... .. .+. ..=.+.++.+++..++..+.++........+.++..
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~---~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 94 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAA---HTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMA 94 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCC---CChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHH
Confidence 46778899999999999999887762110 00 111 112345566655556667655432222356788999
Q ss_pred HHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 203 VHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 203 ~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.++|++.+.+..- ........+.++.+++ .|+.+..+++-...-+++.+.+.++.+.+.|++.+.+
T Consensus 95 ~~~g~~~iri~~~------------~s~~~~~~~~i~~ak~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 95 ADLGVDVVRVATH------------CTEADVSEQHIGAARK--LGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred HHcCCCEEEEEec------------hhhHHHHHHHHHHHHH--CCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999865321 1233456788999999 9999888887666678899999999999999998776
No 170
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=97.43 E-value=0.03 Score=51.73 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=96.9
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEec--cCCCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTS--VDRDDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV 203 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltg--g~~~~l~----~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~ 203 (351)
..+.++..++++.+.+.|++.|=++- +...... -...+.+.++.+..+ ++..+.++......+.+.++...
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK---GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc---cCCEEEEEECCCCCCHHHHHHHh
Confidence 46778999999999999999886642 1111100 001233333333222 34566655443333678888889
Q ss_pred HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+.|++.|.+.. +....++..+.++.+++ .|+.+..+++..++-+.+.+.+.++.+.+.|++.+.+
T Consensus 93 ~~gv~~iri~~------------~~~~~~~~~~~i~~ak~--~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l 157 (266)
T cd07944 93 GSVVDMIRVAF------------HKHEFDEALPLIKAIKE--KGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYI 157 (266)
T ss_pred cCCcCEEEEec------------ccccHHHHHHHHHHHHH--CCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 99999876642 24578889999999999 9999999988888889999999999999999998776
No 171
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=97.41 E-value=0.012 Score=56.25 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=95.7
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEecc-CCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSV-DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg-~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
..+.++-+++++.+.+.|++.|=++.. .+...+. ..+-.++++.+++. ++..+.++.+ +.+-++...++|++
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPq--mad~~ev~~~i~~~-~~~~~~~l~~----n~~die~A~~~g~~ 136 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQ--LADAKDVMAAVRNL-EGARFPVLTP----NLKGFEAAIAAGAK 136 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccc--cccHHHHHHHHHhc-cCCceeEEcC----CHHHHHHHHHcCcC
Confidence 356788889999999999999977542 2211221 12444566666653 4555544443 67889999999999
Q ss_pred eeecchhchHHHHhhhcCCCCCHHH----HHHHHHHHHHhCCCCeEEEeee--eeC---C-CCHHHHHHHHHHHHhCCCC
Q 018731 209 VFAHNIETVKRLQRIVRDPRAGYEQ----SLEVLKHAKLSKKGLITKSSIM--LGL---G-ESDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~~~~~~~~----~l~~i~~~~~~~~Gi~v~~~~I--vGl---g-Et~e~~~~~l~~l~~lg~d 278 (351)
.|.+.+-+.+...+..- +.+.++ ..+.++.+++ .|+.+...+. +|. + -+.+.+.+.++.+.+.|++
T Consensus 137 ~v~i~~s~Sd~h~~~n~--~~t~~e~l~~~~~~v~~Ak~--~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad 212 (347)
T PLN02746 137 EVAVFASASESFSKSNI--NCSIEESLVRYREVALAAKK--HSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCY 212 (347)
T ss_pred EEEEEEecCHHHHHHHh--CCCHHHHHHHHHHHHHHHHH--cCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCC
Confidence 99887744444322221 234444 4468888888 8999876664 443 2 2567788899999999999
Q ss_pred EEee
Q 018731 279 ILTL 282 (351)
Q Consensus 279 ~i~i 282 (351)
.+.+
T Consensus 213 ~I~l 216 (347)
T PLN02746 213 EISL 216 (347)
T ss_pred EEEe
Confidence 8877
No 172
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=97.35 E-value=0.019 Score=54.94 Aligned_cols=135 Identities=15% Similarity=0.109 Sum_probs=97.1
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCC-----C--CCCCCcHHHHHHHHHHHHHhCCCcEEEE-eecCCCCCHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDR-----D--DIPDGGSGHFARTVKAMKKQKPDIMVEC-LTSDFRGDLRAVET 201 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~-----~--~l~~~~~~~~~~li~~ik~~~p~i~i~~-~~~~~~~~~e~l~~ 201 (351)
..+.++..+.++.+.+.|++.|=++.++. . ..+. .. =.+.++.+++..++..+.+ +.|+. .+.+.++.
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~--~~-~~e~i~~~~~~~~~~~~~~ll~pg~-~~~~dl~~ 96 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGA--HT-DEEYIEAAAEVVKQAKIAALLLPGI-GTVDDLKM 96 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCC--CC-HHHHHHHHHHhCCCCEEEEEeccCc-ccHHHHHH
Confidence 46778999999999999999987763321 0 0110 01 1345556655555666664 33433 36688999
Q ss_pred HHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEe
Q 018731 202 LVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILT 281 (351)
Q Consensus 202 L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~ 281 (351)
..++|++.|.+.. .....+...+.++.+++ .|+.+...++....-+++.+.+.++.+.+.|++.+.
T Consensus 97 a~~~gvd~iri~~------------~~~e~~~~~~~i~~ak~--~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~ 162 (337)
T PRK08195 97 AYDAGVRVVRVAT------------HCTEADVSEQHIGLARE--LGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVY 162 (337)
T ss_pred HHHcCCCEEEEEE------------ecchHHHHHHHHHHHHH--CCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEE
Confidence 9999999986542 12244567889999999 999999988887778899999999999999999876
Q ss_pred e
Q 018731 282 L 282 (351)
Q Consensus 282 i 282 (351)
+
T Consensus 163 i 163 (337)
T PRK08195 163 V 163 (337)
T ss_pred e
Confidence 6
No 173
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=97.24 E-value=0.03 Score=53.47 Aligned_cols=132 Identities=17% Similarity=0.122 Sum_probs=95.2
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCC----------CCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDR----------DDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRA 198 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~----------~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~ 198 (351)
..+.++..++++.+.+.|+..|=++.|+. +..+ ..+ .++.+.+..++..+.++ .|+. .+.+.
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~--~~e----~i~~~~~~~~~~~~~~ll~pg~-~~~~d 92 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHT--DLE----YIEAAADVVKRAKVAVLLLPGI-GTVHD 92 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCC--hHH----HHHHHHHhCCCCEEEEEeccCc-cCHHH
Confidence 46778999999999999999987762211 1112 123 33444443445565533 3433 36788
Q ss_pred HHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCC
Q 018731 199 VETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 199 l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d 278 (351)
++...++|++.|.+.. .....+...+.++.+++ .|+.+...++..+.-+++.+.+.++.+.+.|++
T Consensus 93 l~~a~~~gvd~iri~~------------~~~e~d~~~~~i~~ak~--~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~ 158 (333)
T TIGR03217 93 LKAAYDAGARTVRVAT------------HCTEADVSEQHIGMARE--LGMDTVGFLMMSHMTPPEKLAEQAKLMESYGAD 158 (333)
T ss_pred HHHHHHCCCCEEEEEe------------ccchHHHHHHHHHHHHH--cCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999986542 12244567788999999 999998888887788999999999999999999
Q ss_pred EEee
Q 018731 279 ILTL 282 (351)
Q Consensus 279 ~i~i 282 (351)
.+.+
T Consensus 159 ~i~i 162 (333)
T TIGR03217 159 CVYI 162 (333)
T ss_pred EEEE
Confidence 8766
No 174
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=97.17 E-value=0.067 Score=49.70 Aligned_cols=144 Identities=19% Similarity=0.272 Sum_probs=97.1
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEecc-CCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSV-DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg-~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
..++++-.+.++.+.+.|++.|-+++. .+..++. .....++++.+... ++.++.++.+ +.+-++...++|++
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~--~~d~~~~~~~l~~~-~~~~~~~~~~----~~~dv~~A~~~g~~ 88 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQ--MADAEEVLAGLPRR-PGVRYSALVP----NLRGAERALAAGVD 88 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccc--cCCHHHHHhhcccC-CCCEEEEECC----CHHHHHHHHHcCcC
Confidence 356788899999999999999988643 2221221 11222455555543 3566665542 56779999999999
Q ss_pred eeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC-----C-CHHHHHHHHHHHHhCCCCEE
Q 018731 209 VFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG-----E-SDDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 209 ~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg-----E-t~e~~~~~l~~l~~lg~d~i 280 (351)
.+.+.+-+.+.. .+.++ .+....+...+.++.+++ .|+.+..+++.-++ . +.+.+.+.++.+.+.|++.+
T Consensus 89 ~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~--~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i 166 (274)
T cd07938 89 EVAVFVSASETFSQKNINCSIAESLERFEPVAELAKA--AGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEI 166 (274)
T ss_pred EEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 988766555443 22232 012345677788889999 99998777765442 2 56778889999999999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 167 ~l 168 (274)
T cd07938 167 SL 168 (274)
T ss_pred EE
Confidence 77
No 175
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=97.02 E-value=0.011 Score=53.41 Aligned_cols=143 Identities=22% Similarity=0.200 Sum_probs=89.8
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC-HHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~-~e~l~~L~~aG~~~ 209 (351)
.+.++..+.++.+.+.|++.|-+.. + ... +.-.+.++.+.+..+...+.........+ +..++.++++|++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~--~-~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGF--P-FAS----EDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEH--C-TSS----HHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcc--c-ccC----HHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCE
Confidence 5678889999999999999988851 1 122 22233334444333334554433211111 23356667799999
Q ss_pred eecchhchHHHH-hhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRLQ-RIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~~-~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+.+.....+... ..++ .+....+...+.++.+++ .|+.+..+++-...-+.+++.+.++.+.++|++.+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~--~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l 156 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKE--LGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYL 156 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHH--TTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHh--cCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEe
Confidence 987655444332 2221 011235566777888888 9999877776655678899999999999999999877
No 176
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=96.96 E-value=0.096 Score=49.20 Aligned_cols=120 Identities=16% Similarity=0.131 Sum_probs=79.6
Q ss_pred ecCCCCCHHHHHHHHHcCCCeeecchhch-HHH-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CC-CHHH
Q 018731 189 TSDFRGDLRAVETLVHSGLDVFAHNIETV-KRL-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GE-SDDD 264 (351)
Q Consensus 189 ~~~~~~~~e~l~~L~~aG~~~i~~~ies~-~~~-~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gE-t~e~ 264 (351)
.|++- ...++..|...|+.++-+|++|. ++. ++-.| +|+...+.+....+++ +|++|.+.+|.-+ +- -+.|
T Consensus 230 RPDyC-~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNR--GHTV~aVce~F~laKD--aG~KvV~HMMPdLPNVg~eRD 304 (554)
T KOG2535|consen 230 RPDYC-LKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNR--GHTVKAVCESFHLAKD--AGFKVVAHMMPDLPNVGMERD 304 (554)
T ss_pred Ccccc-hhhhHHHHHhcCCceEEeccchhHHHhhhcccC--CccHHHHHHHhhhhhc--cCceeehhhCCCCCCCchhhh
Confidence 35654 46789999999999999999996 444 34444 8999999999999999 9999999999766 22 2334
Q ss_pred HHHHHHHHHh--CCCCEEeeeccc--CCCCCc--ccc--cCCCCHHHHHHHHHHHHh
Q 018731 265 LKEAMADLRS--IDVDILTLGQYL--QPTPLH--LTV--KEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 265 ~~~~l~~l~~--lg~d~i~i~~~l--~PTp~~--~~~--~~~v~~~e~~~~~~~~~~ 313 (351)
+....++... +..|-+.+++.| +-|.++ |.. ....+|+++..+.+....
T Consensus 305 ieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILa 361 (554)
T KOG2535|consen 305 IEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILA 361 (554)
T ss_pred HHHHHHHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHh
Confidence 4444444443 345666665444 226654 211 133567666665444333
No 177
>PRK09389 (R)-citramalate synthase; Provisional
Probab=96.83 E-value=0.15 Score=51.21 Aligned_cols=141 Identities=18% Similarity=0.153 Sum_probs=96.3
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.++.++.+++++.+.+.|++.|=++. |. .+. .. .+.++.+.+...+..+..+... ..+.++...++|++.
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~--p~-~~~---~d-~e~v~~i~~~~~~~~i~a~~r~---~~~di~~a~~~g~~~ 89 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGS--AI-TSE---GE-REAIKAVTDEGLNAEICSFARA---VKVDIDAALECDVDS 89 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeC--Cc-CCH---HH-HHHHHHHHhcCCCcEEEeeccc---CHHHHHHHHhCCcCE
Confidence 46778999999999999999987743 21 121 22 3456666655444555544432 356689999999999
Q ss_pred eecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+-+.+.. ...++ .+....+...+.++.+++ .|+.+..+..-+..-+.+-+.+.++.+.+.|++.+.+
T Consensus 90 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~--~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 162 (488)
T PRK09389 90 VHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKD--HGLIVELSGEDASRADLDFLKELYKAGIEAGADRICF 162 (488)
T ss_pred EEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 88877665543 22232 112344566677788888 8998887777655556777789999999999998776
No 178
>PRK00915 2-isopropylmalate synthase; Validated
Probab=96.76 E-value=0.22 Score=50.52 Aligned_cols=144 Identities=18% Similarity=0.079 Sum_probs=93.2
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC-HHHHHHHHHcCCC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLD 208 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~-~e~l~~L~~aG~~ 208 (351)
.++.++..++++.+.+.|++.|-++ .|. ... ..+ +.++.+.+..++..+.++......+ +..++.++++|.+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G--~p~-~s~---~d~-~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~ 94 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAG--FPA-SSP---GDF-EAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAP 94 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEc--CCC-CCh---HHH-HHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCC
Confidence 4677888999999999999998773 331 221 233 3446665555566776655321111 2344455588999
Q ss_pred eeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 209 VFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 209 ~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+|.+.+-+.+-. ...++ .+....+...+.++.+++ .|+.+..+..-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 95 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~--~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l 168 (513)
T PRK00915 95 RIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARS--YTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINI 168 (513)
T ss_pred EEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 988876655442 23332 011233445578888898 8998876666555455777899999999999998776
No 179
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=96.66 E-value=0.22 Score=46.24 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=93.3
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCC-----CCCCCcHHHHHHHHHHHHHhCCCcEEEEeecC-----C-----CC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRD-----DIPDGGSGHFARTVKAMKKQKPDIMVECLTSD-----F-----RG 194 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~-----~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~-----~-----~~ 194 (351)
..+.++..+.+..+.+.|+..|=++++... .... .=.+.++.+.+..++..+.++... + ..
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~----~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~ 92 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNE----DPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDV 92 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCC----CHHHHHHHHHHhCCCCceehhcccccccCccCCCcHH
Confidence 356788888999999999999987653210 0111 114555666665555555433221 0 01
Q ss_pred CHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeee--eCCCCHHHHHHHHHHH
Q 018731 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML--GLGESDDDLKEAMADL 272 (351)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv--GlgEt~e~~~~~l~~l 272 (351)
.++.++...++|++.|.+.. +..+.+...+.++.+++ .|+.+...+.. +-.-+.+.+.+.++.+
T Consensus 93 ~~~di~~~~~~g~~~iri~~------------~~~~~~~~~~~i~~ak~--~G~~v~~~i~~~~~~~~~~~~~~~~~~~~ 158 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFD------------ALNDVRNLEVAIKAVKK--AGKHVEGAICYTGSPVHTLEYYVKLAKEL 158 (275)
T ss_pred HHHHHHHHHHcCCCEEEEee------------cCChHHHHHHHHHHHHH--CCCeEEEEEEecCCCCCCHHHHHHHHHHH
Confidence 46788899999999886532 23467788899999999 99987766654 2256788889999999
Q ss_pred HhCCCCEEee
Q 018731 273 RSIDVDILTL 282 (351)
Q Consensus 273 ~~lg~d~i~i 282 (351)
.+.|++.+.+
T Consensus 159 ~~~Ga~~i~l 168 (275)
T cd07937 159 EDMGADSICI 168 (275)
T ss_pred HHcCCCEEEE
Confidence 9999998877
No 180
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=96.56 E-value=0.43 Score=44.23 Aligned_cols=144 Identities=13% Similarity=0.044 Sum_probs=91.6
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEee----cCCC-CCHHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLT----SDFR-GDLRAVETLV 203 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~----~~~~-~~~e~l~~L~ 203 (351)
.++.++..+.++.+.+.|++.|-++.+. .. +.-.+.++.+.+.. ++..+.... ++.. .++..++.++
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~ 88 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPG---SN----PKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALL 88 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCc---CC----HHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHH
Confidence 4667889999999999999999884421 11 22344455565542 233433221 2221 1345788899
Q ss_pred HcCCCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeee---eeCCCCHHHHHHHHHHHHhCCCC
Q 018731 204 HSGLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIM---LGLGESDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I---vGlgEt~e~~~~~l~~l~~lg~d 278 (351)
++|++.+.+.+-+.+.. ....+ .+...++...+.++.+++ .|+.+..+.+ -|...+.+.+.+.++.+.+.|++
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~--~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~ 166 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKS--HGREVIFDAEHFFDGYKANPEYALATLKAAAEAGAD 166 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH--cCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCC
Confidence 99999987755443332 22221 112456677788889999 8998777543 23234577778888999999999
Q ss_pred EEee
Q 018731 279 ILTL 282 (351)
Q Consensus 279 ~i~i 282 (351)
.+.+
T Consensus 167 ~i~l 170 (273)
T cd07941 167 WLVL 170 (273)
T ss_pred EEEE
Confidence 8766
No 181
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=96.55 E-value=0.17 Score=52.01 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=94.1
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCC----CCCCcHHHHHHHHHHHHHhCCCcEEEEeec--CCC--------CC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD----IPDGGSGHFARTVKAMKKQKPDIMVECLTS--DFR--------GD 195 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~----l~~~~~~~~~~li~~ik~~~p~i~i~~~~~--~~~--------~~ 195 (351)
+++.++.+.++..+.+.|+..|=+.||...+ +.. +.-.+.++.+++..|+..+.++.. +.. .-
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~---edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv 98 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLN---EDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVV 98 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCC---ccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhh
Confidence 4677889999999999999999887774311 111 344566778888778877766532 211 12
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHH
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLR 273 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~ 273 (351)
+..++...++|++.+.+.. + -.+.+.....++.+++ .|..+...+-+-. -.|.+.+.+.++.+.
T Consensus 99 ~~~v~~A~~~Gvd~irif~-~-----------lnd~~n~~~~i~~ak~--~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFD-A-----------LNDVRNMEVAIKAAKK--AGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred HHHHHHHHHCCCCEEEEEE-e-----------cChHHHHHHHHHHHHH--cCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4678888999999876531 1 1233455667788888 8888776654322 357888899999999
Q ss_pred hCCCCEEee
Q 018731 274 SIDVDILTL 282 (351)
Q Consensus 274 ~lg~d~i~i 282 (351)
+.|+|.+.+
T Consensus 165 ~~Gad~I~i 173 (592)
T PRK09282 165 EMGCDSICI 173 (592)
T ss_pred HcCCCEEEE
Confidence 999998777
No 182
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=96.41 E-value=0.26 Score=50.66 Aligned_cols=138 Identities=16% Similarity=0.099 Sum_probs=94.2
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCC--CCCCcHHHHHHHHHHHHHhCCCcEEEEeec--CC--C------CCHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD--IPDGGSGHFARTVKAMKKQKPDIMVECLTS--DF--R------GDLR 197 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~--l~~~~~~~~~~li~~ik~~~p~i~i~~~~~--~~--~------~~~e 197 (351)
+++.++.+++++.+.+.|+..|=++||...+ ++-.+ +.=.+.++.+++..|++.+.++.. +. . .-++
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~-e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~ 95 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLN-EDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVER 95 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCC-CCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHH
Confidence 4677899999999999999999888765322 11001 223567778887777877766532 11 1 1245
Q ss_pred HHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHHhC
Q 018731 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSI 275 (351)
Q Consensus 198 ~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~~l 275 (351)
.++...++|++.+.+.. + -.+.+.....++.+++ .|+.+...+-+-. -.|.+.+.+.++.+.+.
T Consensus 96 ~v~~a~~~Gvd~irif~-~-----------lnd~~n~~~~i~~ak~--~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~ 161 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFD-A-----------LNDPRNLQAAIQAAKK--HGAHAQGTISYTTSPVHTLETYLDLAEELLEM 161 (582)
T ss_pred HHHHHHHCCCCEEEEEE-e-----------cCcHHHHHHHHHHHHH--cCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc
Confidence 78889999999876531 1 1123456677788888 8988776643332 35788899999999999
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 162 Gad~I~i 168 (582)
T TIGR01108 162 GVDSICI 168 (582)
T ss_pred CCCEEEE
Confidence 9998777
No 183
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=96.35 E-value=0.17 Score=47.12 Aligned_cols=139 Identities=19% Similarity=0.228 Sum_probs=91.1
Q ss_pred CCCchhHHHHHHHH-HhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh------CCCcEEEEeecCCCCCHHHHHHH
Q 018731 130 PPDPMEPENTAKAI-ASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ------KPDIMVECLTSDFRGDLRAVETL 202 (351)
Q Consensus 130 ~~~~eei~~~~~~~-~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~------~p~i~i~~~~~~~~~~~e~l~~L 202 (351)
..+.++-.++++.+ .+.|++.|=+++- .... +.+ +.++.+.+. .+++.+.++.+ ....++..
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~---~~s~---~e~-~av~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~~A 83 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASA---RVSE---GEF-EAVQKIIDWAAEEGLLDRIEVLGFVD----GDKSVDWI 83 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCC---CCCH---HHH-HHHHHHHHHhhhhccccCcEEEEecC----cHHHHHHH
Confidence 35678888999986 5679999988542 1221 122 444444321 12344443333 34678999
Q ss_pred HHcCCCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC----CCHHHHHHHHHHHHhCC
Q 018731 203 VHSGLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG----ESDDDLKEAMADLRSID 276 (351)
Q Consensus 203 ~~aG~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg----Et~e~~~~~l~~l~~lg 276 (351)
+++|++.|.+.+-+.+.. .+.++ .+....++..+.++.+++ .|+.+..++.- ++ -+.+.+.+.++.+.+.|
T Consensus 84 ~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~--~G~~v~~~~~d-~~~~~r~~~~~~~~~~~~~~~~G 160 (280)
T cd07945 84 KSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIK--NGIEVNIYLED-WSNGMRDSPDYVFQLVDFLSDLP 160 (280)
T ss_pred HHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh--CCCEEEEEEEe-CCCCCcCCHHHHHHHHHHHHHcC
Confidence 999999998876554443 22222 123355666777888888 89988877764 33 46888899999999999
Q ss_pred CCEEee
Q 018731 277 VDILTL 282 (351)
Q Consensus 277 ~d~i~i 282 (351)
++.+.+
T Consensus 161 ~~~i~l 166 (280)
T cd07945 161 IKRIML 166 (280)
T ss_pred CCEEEe
Confidence 998777
No 184
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.20 E-value=0.27 Score=44.21 Aligned_cols=129 Identities=12% Similarity=0.104 Sum_probs=81.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
++..+.++++.+.+.|++.+.+-=-+....++ ..-=.++++.+++..| +.++..+.+ .+..++.++++|.+.|+
T Consensus 23 d~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN--itfGp~~i~~i~~~~~-~DvHLMv~~---P~~~i~~~~~aGad~It 96 (228)
T PRK08091 23 NWLKFNETLTTLSENQLRLLHFDIADGQFSPF--FTVGAIAIKQFPTHCF-KDVHLMVRD---QFEVAKACVAAGADIVT 96 (228)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc--cccCHHHHHHhCCCCC-EEEEeccCC---HHHHHHHHHHhCCCEEE
Confidence 44567788889999999988763222211232 1111244555554332 455554432 45789999999999999
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
+..|+.. +..+.++.+++ .|+.+.+++.+..+-..+.+...+. .+|.+.++ -..|
T Consensus 97 ~H~Ea~~--------------~~~~~l~~Ik~--~g~~~kaGlalnP~Tp~~~i~~~l~-----~vD~VLiM-tV~P 151 (228)
T PRK08091 97 LQVEQTH--------------DLALTIEWLAK--QKTTVLIGLCLCPETPISLLEPYLD-----QIDLIQIL-TLDP 151 (228)
T ss_pred EcccCcc--------------cHHHHHHHHHH--CCCCceEEEEECCCCCHHHHHHHHh-----hcCEEEEE-EECC
Confidence 9888631 12356667788 8987778888876666666665554 37777775 3345
No 185
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=96.17 E-value=0.32 Score=48.31 Aligned_cols=136 Identities=11% Similarity=0.062 Sum_probs=90.1
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCC----CCCcHHHHHHHHHHHHHhCCCcEEEEee--cCC--C------CC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDI----PDGGSGHFARTVKAMKKQKPDIMVECLT--SDF--R------GD 195 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l----~~~~~~~~~~li~~ik~~~p~i~i~~~~--~~~--~------~~ 195 (351)
+.+.++.+++++.+.+.|+..|=++||...+- .. +.=.+.++.+++..|++.+.++. ++. . .-
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~---e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLN---EDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCC---CCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhH
Confidence 46778899999999999999998887753211 11 12356677777766777665322 111 1 12
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHH
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLR 273 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~ 273 (351)
++.++...++|++.+.+.. ++++ .....+.++.+++ .|+.+...+-+-. -.+.+-+.+.++.+.
T Consensus 99 ~~~v~~A~~~Gvd~irif~-~lnd-----------~~n~~~~v~~ak~--~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~ 164 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFD-ALND-----------VRNLETAVKATKK--AGGHAQVAISYTTSPVHTIDYFVKLAKEMQ 164 (448)
T ss_pred HHHHHHHHHCCCCEEEEEE-ecCc-----------HHHHHHHHHHHHH--cCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 4677889999999886542 1111 1234557788888 8887654443322 356788888888899
Q ss_pred hCCCCEEee
Q 018731 274 SIDVDILTL 282 (351)
Q Consensus 274 ~lg~d~i~i 282 (351)
+.|+|.+.+
T Consensus 165 ~~Gad~I~i 173 (448)
T PRK12331 165 EMGADSICI 173 (448)
T ss_pred HcCCCEEEE
Confidence 999998777
No 186
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=96.14 E-value=0.24 Score=49.74 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=89.8
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEeccCCCC-----CCCCcHHHHHHHHHHHHHhCCCcEEEEeecC-----CC-----
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDD-----IPDGGSGHFARTVKAMKKQKPDIMVECLTSD-----FR----- 193 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~-----l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~-----~~----- 193 (351)
.+++.++.+.+++.+.+.|+..|=+.||...+ +. +.=.+.++.+++..|+..+.++..+ +.
T Consensus 22 tr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~----Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~dd 97 (499)
T PRK12330 22 TRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLN----EDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDE 97 (499)
T ss_pred ccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccC----CCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchh
Confidence 45678999999999999999999887775422 22 2224667788887788777654421 11
Q ss_pred CCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee--eeeCCCCHHHHHHHHHH
Q 018731 194 GDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGESDDDLKEAMAD 271 (351)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--IvGlgEt~e~~~~~l~~ 271 (351)
.-+..++...++|+|.+.+.. +-.+.+....+++.+++ .|..+...+ ..+.-.|.+.+.+.++.
T Consensus 98 vv~~fv~~a~~~Gidi~RIfd------------~lndv~nl~~ai~~vk~--ag~~~~~~i~yt~sp~~t~e~~~~~a~~ 163 (499)
T PRK12330 98 VVDRFVEKSAENGMDVFRVFD------------ALNDPRNLEHAMKAVKK--VGKHAQGTICYTVSPIHTVEGFVEQAKR 163 (499)
T ss_pred HHHHHHHHHHHcCCCEEEEEe------------cCChHHHHHHHHHHHHH--hCCeEEEEEEEecCCCCCHHHHHHHHHH
Confidence 014577888889999875431 12233444555666666 666553333 33446778888888888
Q ss_pred HHhCCCCEEee
Q 018731 272 LRSIDVDILTL 282 (351)
Q Consensus 272 l~~lg~d~i~i 282 (351)
+.+.|++.+.+
T Consensus 164 l~~~Gad~I~I 174 (499)
T PRK12330 164 LLDMGADSICI 174 (499)
T ss_pred HHHcCCCEEEe
Confidence 88888887776
No 187
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=96.14 E-value=0.29 Score=48.81 Aligned_cols=136 Identities=14% Similarity=0.111 Sum_probs=90.9
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCC----CCCCcHHHHHHHHHHHHHhCCCcEEEEee--cCCCC--------C
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD----IPDGGSGHFARTVKAMKKQKPDIMVECLT--SDFRG--------D 195 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~----l~~~~~~~~~~li~~ik~~~p~i~i~~~~--~~~~~--------~ 195 (351)
+.+.++.+++++.+.+.|+..|=+.||...+ +.. +.-.+.++.+++..|++.+.++. ++... -
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~---e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv 97 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLN---ENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVV 97 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccC---CCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhh
Confidence 4677899999999999999999887664311 111 22356777777766777766532 22110 1
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHH
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLR 273 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~ 273 (351)
+..++...++|++.+.+.. +++ +.+.....++.+++ .|..+...+-+.+ -.|.+.+.+.++.+.
T Consensus 98 ~~fv~~A~~~Gvd~irif~-~ln-----------d~~n~~~~i~~ak~--~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~ 163 (467)
T PRK14041 98 ELFVKKVAEYGLDIIRIFD-ALN-----------DIRNLEKSIEVAKK--HGAHVQGAISYTVSPVHTLEYYLEFARELV 163 (467)
T ss_pred HHHHHHHHHCCcCEEEEEE-eCC-----------HHHHHHHHHHHHHH--CCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 2457888899999886542 111 23345566788888 8887765554333 467888889999999
Q ss_pred hCCCCEEee
Q 018731 274 SIDVDILTL 282 (351)
Q Consensus 274 ~lg~d~i~i 282 (351)
+.|+|.+.+
T Consensus 164 ~~Gad~I~i 172 (467)
T PRK14041 164 DMGVDSICI 172 (467)
T ss_pred HcCCCEEEE
Confidence 999998777
No 188
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=96.14 E-value=0.68 Score=46.70 Aligned_cols=141 Identities=15% Similarity=0.009 Sum_probs=90.4
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHH----HHHHc
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVE----TLVHS 205 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~----~L~~a 205 (351)
.++.++-.++++.+.+.|++.|=+ |.|. .+ ...+ +.++.+.+..++..+.++... .++.++ .+.++
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEv--G~p~-~s---~~d~-e~v~~i~~~~~~~~i~al~r~---~~~did~a~~al~~~ 88 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEA--GFPV-SS---PGDF-EAVQRIARTVKNPRVCGLARC---VEKDIDAAAEALKPA 88 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE--ECCC-CC---HHHH-HHHHHHHHhCCCCEEEEEcCC---CHHhHHHHHHhcccc
Confidence 367788899999999999999876 3331 22 1233 344666555555566655432 233344 44455
Q ss_pred CCCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 206 GLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 206 G~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+.++|.+.+-+.+.. ...++ .+....+...+.++.+++ .|..+..+..-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 89 ~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~--~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l 165 (494)
T TIGR00973 89 EKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKN--FTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINI 165 (494)
T ss_pred CCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 778887766554442 23332 011233445568888888 8888776666655556788889999999999998776
No 189
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=95.94 E-value=0.34 Score=49.86 Aligned_cols=138 Identities=18% Similarity=0.082 Sum_probs=93.9
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCC--CCCCcHHHHHHHHHHHHHhCCCcEEEEeecCC-----CC-----CHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD--IPDGGSGHFARTVKAMKKQKPDIMVECLTSDF-----RG-----DLR 197 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~--l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~-----~~-----~~e 197 (351)
+++.++.+.+++.+.+.|+..+=+.||-..+ ++-.+ +.=.+.++.+++..|+..+.++..+- .. -+.
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~-e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLG-EDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccC-CCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 4678899999999999999999887663222 11011 12256777888877887776544421 01 135
Q ss_pred HHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee--eeCCCCHHHHHHHHHHHHhC
Q 018731 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM--LGLGESDDDLKEAMADLRSI 275 (351)
Q Consensus 198 ~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I--vGlgEt~e~~~~~l~~l~~l 275 (351)
.++..+++|++.+.+.. .-.+.+....+++.+++ .|..+...+- ..-..|.+.+.+.++.+.+.
T Consensus 102 ~v~~a~~~Gid~~rifd------------~lnd~~~~~~ai~~ak~--~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~ 167 (593)
T PRK14040 102 FVERAVKNGMDVFRVFD------------AMNDPRNLETALKAVRK--VGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDM 167 (593)
T ss_pred HHHHHHhcCCCEEEEee------------eCCcHHHHHHHHHHHHH--cCCeEEEEEEEeeCCccCHHHHHHHHHHHHHc
Confidence 58888999999886541 12234566778888888 8887544332 23357788889999999999
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 168 Gad~i~i 174 (593)
T PRK14040 168 GVDSLCI 174 (593)
T ss_pred CCCEEEE
Confidence 9998777
No 190
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=95.71 E-value=2.4 Score=43.16 Aligned_cols=144 Identities=10% Similarity=0.022 Sum_probs=91.4
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEee----cCCC-CCHHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLT----SDFR-GDLRAVETLV 203 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~----~~~~-~~~e~l~~L~ 203 (351)
.++.++-+++++.+.+.|++.|=+ |.|. .. +.-.+.++.+.+... +..|..+. ++.. ..+..++.++
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~--G~p~-~s----~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~ 91 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEG--GWPG-AN----PKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALI 91 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE--eCCC-CC----hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHh
Confidence 467788899999999999999877 3321 12 122344455544322 34554433 2211 1356789999
Q ss_pred HcCCCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeee---eeCCCCHHHHHHHHHHHHhCCCC
Q 018731 204 HSGLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIM---LGLGESDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I---vGlgEt~e~~~~~l~~l~~lg~d 278 (351)
++|.+.|.+.+-+.+-. ...++ .+....+...+.++.+++ .|+.|..+.. -|.--+.+.+.+.++.+.+.|++
T Consensus 92 ~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~--~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad 169 (526)
T TIGR00977 92 KAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKR--QGDEVIYDAEHFFDGYKANPEYALATLATAQQAGAD 169 (526)
T ss_pred cCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCC
Confidence 99999988866655442 22332 012234445566888888 8988754333 34435678889999999999999
Q ss_pred EEee
Q 018731 279 ILTL 282 (351)
Q Consensus 279 ~i~i 282 (351)
.+.+
T Consensus 170 ~i~i 173 (526)
T TIGR00977 170 WLVL 173 (526)
T ss_pred eEEE
Confidence 8777
No 191
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=95.63 E-value=0.51 Score=47.02 Aligned_cols=138 Identities=13% Similarity=0.067 Sum_probs=89.9
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCC--CCCCcHHHHHHHHHHHHHhCCCcEEEEeecC-----CCC-----CHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD--IPDGGSGHFARTVKAMKKQKPDIMVECLTSD-----FRG-----DLR 197 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~--l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~-----~~~-----~~e 197 (351)
+++.+++...+..+.+.|+..+-+.||...+ +.-.. +.=.+-++.+++..|+..+..+..+ +.- -+.
T Consensus 31 r~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~-edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~ 109 (468)
T PRK12581 31 RLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLN-EDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDK 109 (468)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccC-CCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHH
Confidence 4678899999999999999999888876433 11000 1124556777777777766644332 111 134
Q ss_pred HHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeee-C-CCCHHHHHHHHHHHHhC
Q 018731 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG-L-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 198 ~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG-l-gEt~e~~~~~l~~l~~l 275 (351)
.++..++.|+|.+-+. + .-.+.+.....++.+++ .|..+...+.+= - ..|.+-+.+.++.+.+.
T Consensus 110 fv~~a~~~Gidi~Rif----d--------~lnd~~n~~~ai~~ak~--~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~ 175 (468)
T PRK12581 110 FISLSAQNGIDVFRIF----D--------ALNDPRNIQQALRAVKK--TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEM 175 (468)
T ss_pred HHHHHHHCCCCEEEEc----c--------cCCCHHHHHHHHHHHHH--cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHc
Confidence 5788889999987432 1 12356666777778888 888755433321 1 45677788888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|++.+.+
T Consensus 176 Gad~I~I 182 (468)
T PRK12581 176 GADSICI 182 (468)
T ss_pred CCCEEEE
Confidence 8888776
No 192
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=95.56 E-value=1.4 Score=44.77 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=91.4
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEee----cCCC-CCHHHHHHH
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLT----SDFR-GDLRAVETL 202 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~----~~~~-~~~e~l~~L 202 (351)
..++.++.+++++.+.+.|++.|=++. |. ... .. .+.++.+.+.. .+..+..+. .+.. .++..++.+
T Consensus 22 ~~~s~e~Kl~ia~~L~~~Gvd~IEvG~--p~-as~---~d-~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~ 94 (524)
T PRK12344 22 ISFSVEDKLRIARKLDELGVDYIEGGW--PG-SNP---KD-TEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQAL 94 (524)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcC--Cc-CCh---hH-HHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHH
Confidence 346788999999999999999987732 21 111 11 34455565422 234444332 1211 135678999
Q ss_pred HHcCCCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeee---eeCCCCHHHHHHHHHHHHhCCC
Q 018731 203 VHSGLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIM---LGLGESDDDLKEAMADLRSIDV 277 (351)
Q Consensus 203 ~~aG~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I---vGlgEt~e~~~~~l~~l~~lg~ 277 (351)
+++|.+.|.+.+-+.+-. ...++ .+....+...+.++.+++ .|+.+..+.+ -|.-.+.+-+.+.++.+.+.|+
T Consensus 95 ~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~--~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Ga 172 (524)
T PRK12344 95 LDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKA--HGREVIFDAEHFFDGYKANPEYALATLKAAAEAGA 172 (524)
T ss_pred HhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH--cCCeEEEccccccccccCCHHHHHHHHHHHHhCCC
Confidence 999999998876554432 22222 112345566677888888 8988765444 2323446667888888999999
Q ss_pred CEEee
Q 018731 278 DILTL 282 (351)
Q Consensus 278 d~i~i 282 (351)
+.+.+
T Consensus 173 d~i~l 177 (524)
T PRK12344 173 DWVVL 177 (524)
T ss_pred CeEEE
Confidence 98776
No 193
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=95.50 E-value=1.1 Score=39.72 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=93.3
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.+.+.+..++++....|..+|-+.- | .++++.+++. .++.|++.. .+++.+-.-.++|.|.|
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIAa-------d------p~LV~~~~~~-s~lPICVSa----Vep~~f~~aV~AGAdli 85 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIAA-------D------PELVKLAKSL-SNLPICVSA----VEPELFVAAVKAGADLI 85 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEecC-------C------HHHHHHHHHh-CCCCeEeec----CCHHHHHHHHHhCCCEE
Confidence 4567888888888777888876621 1 2345555554 366776533 47888888999999999
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
-+| .+|.+|..-| ..+.+++++..++.|+..|.+.++.++..-| ..++-.+....|.++|+|.+.-
T Consensus 86 EIG--NfDsFY~qGr--~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL--~ld~Qv~LA~~L~~~GaDiIQT 151 (242)
T PF04481_consen 86 EIG--NFDSFYAQGR--RFSAEEVLALTRETRSLLPDITLSVTVPHIL--PLDQQVQLAEDLVKAGADIIQT 151 (242)
T ss_pred Eec--chHHHHhcCC--eecHHHHHHHHHHHHHhCCCCceEEecCccc--cHHHHHHHHHHHHHhCCcEEEc
Confidence 764 2556776544 7899999999999999888887777765433 4455677888899999998765
No 194
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=95.22 E-value=1.3 Score=40.28 Aligned_cols=131 Identities=19% Similarity=0.173 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++.+.++.+.+.|++++++..-+.. .. ...-.++++.|.+.. ++.+.+ .++..+.|.++.+.++|++++.+|-
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~--~g--~~~n~~~i~~i~~~~-~~pv~v--gGGirs~edv~~~l~~Ga~kvviGs 105 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA--FG--RGSNRELLAEVVGKL-DVKVEL--SGGIRDDESLEAALATGCARVNIGT 105 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc--CC--CCccHHHHHHHHHHc-CCCEEE--cCCCCCHHHHHHHHHCCCCEEEECc
Confidence 6778888888999999998665431 11 123347888887753 445543 5566789999999999999998775
Q ss_pred hchHHHHhhhcCCCCCHHHHHHHHHHHHH-hCCCCeEEEee--eeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKL-SKKGLITKSSI--MLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 215 es~~~~~~~~r~~~~~~~~~l~~i~~~~~-~~~Gi~v~~~~--IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
..+++ .+-+.+.++...+ ...++.+..+. +.|..++..+..+.++.+.+.|++.+.+.
T Consensus 106 ~~l~~-----------p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~ 166 (241)
T PRK14024 106 AALEN-----------PEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVT 166 (241)
T ss_pred hHhCC-----------HHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEE
Confidence 44322 2222222222222 00122221111 22443455667788888899999988874
No 195
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=95.07 E-value=0.77 Score=47.24 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=91.2
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHhCCCcEEEEeec-----CCCC-C----HH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDI--PDGGSGHFARTVKAMKKQKPDIMVECLTS-----DFRG-D----LR 197 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l--~~~~~~~~~~li~~ik~~~p~i~i~~~~~-----~~~~-~----~e 197 (351)
+++.+++...+..+.+.|+..+-+.||...+- .-.. +.=.+.++.+++..|++.+..+.. ++.. . +.
T Consensus 22 r~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~-edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~ 100 (596)
T PRK14042 22 RMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLK-EDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRA 100 (596)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccC-CCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHH
Confidence 46778999999999999999998888764211 1000 122456777887778876665431 1111 1 34
Q ss_pred HHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee--eeeCCCCHHHHHHHHHHHHhC
Q 018731 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGESDDDLKEAMADLRSI 275 (351)
Q Consensus 198 ~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--IvGlgEt~e~~~~~l~~l~~l 275 (351)
.++..++.|+|.+-+. + .-.+.+.....++.+++ .|..+...+ +...-.|.+.+.+.++.+.+.
T Consensus 101 ~v~~a~~~Gidv~Rif----d--------~lnd~~n~~~~i~~~k~--~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~ 166 (596)
T PRK14042 101 FVKLAVNNGVDVFRVF----D--------ALNDARNLKVAIDAIKS--HKKHAQGAICYTTSPVHTLDNFLELGKKLAEM 166 (596)
T ss_pred HHHHHHHcCCCEEEEc----c--------cCcchHHHHHHHHHHHH--cCCEEEEEEEecCCCCCCHHHHHHHHHHHHHc
Confidence 7788889999987432 1 12244555566777777 787655553 333378888888888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|++.+.+
T Consensus 167 Gad~I~I 173 (596)
T PRK14042 167 GCDSIAI 173 (596)
T ss_pred CCCEEEe
Confidence 8888777
No 196
>PRK14057 epimerase; Provisional
Probab=94.99 E-value=1.3 Score=40.52 Aligned_cols=129 Identities=14% Similarity=0.095 Sum_probs=77.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+...+.++++.+.+.|++.+.+-=-+....|+ ...=.++++.+++..| +.++..+.+ .+..++.+.++|.|.|+
T Consensus 30 D~~~L~~el~~l~~~g~d~lHiDVMDG~FVPN--itfGp~~i~~i~~~~p-~DvHLMV~~---P~~~i~~~~~aGad~It 103 (254)
T PRK14057 30 QWIALHRYLQQLEALNQPLLHLDLMDGQFCPQ--FTVGPWAVGQLPQTFI-KDVHLMVAD---QWTAAQACVKAGAHCIT 103 (254)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCccCCc--cccCHHHHHHhccCCC-eeEEeeeCC---HHHHHHHHHHhCCCEEE
Confidence 44577888889989999988763222211222 0011244555554333 455554432 45789999999999999
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-------EEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeec
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-------TKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-------v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
+..|+... ..++++.+|+ .|++ +.+++.+..+-..+.+...+. .+|.+.++
T Consensus 104 ~H~Ea~~~--------------~~~~l~~Ir~--~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~-----~vD~VLvM- 161 (254)
T PRK14057 104 LQAEGDIH--------------LHHTLSWLGQ--QTVPVIGGEMPVIRGISLCPATPLDVIIPILS-----DVEVIQLL- 161 (254)
T ss_pred EeeccccC--------------HHHHHHHHHH--cCCCcccccccceeEEEECCCCCHHHHHHHHH-----hCCEEEEE-
Confidence 98886311 2345566777 7764 456666665655666655544 37777775
Q ss_pred ccCC
Q 018731 285 YLQP 288 (351)
Q Consensus 285 ~l~P 288 (351)
-..|
T Consensus 162 tV~P 165 (254)
T PRK14057 162 AVNP 165 (254)
T ss_pred EECC
Confidence 3355
No 197
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=94.91 E-value=1 Score=40.83 Aligned_cols=132 Identities=16% Similarity=0.135 Sum_probs=83.0
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+.+.|++.++++.-+..... . ..-.++++.+++.. ++.+. ..++..+.+.++.+.+.|++.+.+
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~-~--~~~~~~i~~i~~~~-~~pv~--~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSEG-R--ETMLDVVERVAEEV-FIPLT--VGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCccccc-C--cccHHHHHHHHHhC-CCCEE--EeCCCCCHHHHHHHHHcCCceEEE
Confidence 457778888888899999999776542111 1 23457788887753 34443 356666888999999999999877
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeee------------eCCCCHHHHHHHHHHHHhCCCCEE
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML------------GLGESDDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv------------GlgEt~e~~~~~l~~l~~lg~d~i 280 (351)
+-.... +++...+..+.+.+ ..+.+..++-. |..++..+..+.++.+.+.|++.+
T Consensus 100 g~~~~~-----------~p~~~~~i~~~~~~--~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i 166 (243)
T cd04731 100 NSAAVE-----------NPELIREIAKRFGS--QCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEI 166 (243)
T ss_pred Cchhhh-----------ChHHHHHHHHHcCC--CCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEE
Confidence 632221 22233333333322 23444554332 223456667778888899999988
Q ss_pred eee
Q 018731 281 TLG 283 (351)
Q Consensus 281 ~i~ 283 (351)
.+.
T Consensus 167 ~v~ 169 (243)
T cd04731 167 LLT 169 (243)
T ss_pred EEe
Confidence 884
No 198
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=94.89 E-value=1.8 Score=42.59 Aligned_cols=141 Identities=21% Similarity=0.181 Sum_probs=94.5
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC---cEEEEeecCCCCCHHHHHHHHHcC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD---IMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~---i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
.++.++-+++++.+.+.|++.|-.+... .+ +.-.+.++.+....+. ..+.+... .....++.+.++|
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~---~s----~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~ea~~~a~ 89 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFPV---AS----PGDFEFVRAIAEKAGLFICALIAALAR---AIKRDIEALLEAG 89 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCc---CC----hhhHHHHHHHHHhcCcccchhhhhhHH---hHHhhHHHHHhCC
Confidence 4677899999999999999998774322 22 2334555555532211 11212111 1345889999999
Q ss_pred CCeeecchhchHH-HHhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 207 LDVFAHNIETVKR-LQRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 207 ~~~i~~~ies~~~-~~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+++|.+-+.+.+- +...++ .+....+...+.++.+++ .|+.+..+..-...-+.+.+.+.++.+.+.|++.+.+
T Consensus 90 ~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~--~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l 165 (409)
T COG0119 90 VDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARD--HGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINL 165 (409)
T ss_pred CCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 9998876666544 222222 123356677788889999 9988776666655777888899999999899988887
No 199
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=94.83 E-value=2.1 Score=38.41 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=84.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~--i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
+...+.++++.+.+.|++.+.+-=-+....++ ...=.++++.+++..++ +.++..+.+ .+..++.++++|.+.
T Consensus 10 d~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn--~tfg~~~i~~i~~~~~~~~~dvHLMv~~---p~~~i~~~~~~gad~ 84 (220)
T PRK08883 10 DFARLGEDVEKVLAAGADVVHFDVMDNHYVPN--LTFGAPICKALRDYGITAPIDVHLMVKP---VDRIIPDFAKAGASM 84 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCcccCc--cccCHHHHHHHHHhCCCCCEEEEeccCC---HHHHHHHHHHhCCCE
Confidence 34567788888888999987663222211222 11113566677664222 455554432 357899999999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC-
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP- 288 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P- 288 (351)
|++..|+.+. ..+.++.+|+ .|++ +++.+..+-..+.+...+. .+|.+.++ -..|
T Consensus 85 i~~H~Ea~~~--------------~~~~l~~ik~--~g~k--~GlalnP~Tp~~~i~~~l~-----~~D~vlvM-tV~PG 140 (220)
T PRK08883 85 ITFHVEASEH--------------VDRTLQLIKE--HGCQ--AGVVLNPATPLHHLEYIMD-----KVDLILLM-SVNPG 140 (220)
T ss_pred EEEcccCccc--------------HHHHHHHHHH--cCCc--EEEEeCCCCCHHHHHHHHH-----hCCeEEEE-EecCC
Confidence 9998886321 2345566777 7875 4555544444455544433 35666664 3356
Q ss_pred CCCcccccCCCCHHHHHHHHHHHHhcC
Q 018731 289 TPLHLTVKEYVTPEKFDFWKAYGESIG 315 (351)
Q Consensus 289 Tp~~~~~~~~v~~~e~~~~~~~~~~~G 315 (351)
+..+. ......+.+.++++.....|
T Consensus 141 fgGq~--fi~~~lekI~~l~~~~~~~~ 165 (220)
T PRK08883 141 FGGQS--FIPHTLDKLRAVRKMIDESG 165 (220)
T ss_pred CCCce--ecHhHHHHHHHHHHHHHhcC
Confidence 33321 11122334555555554444
No 200
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=94.78 E-value=3 Score=42.11 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=82.3
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC---------cEEEEeecCCCCCHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD---------IMVECLTSDFRGDLRAVE 200 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~---------i~i~~~~~~~~~~~e~l~ 200 (351)
..+.++-.++++.+.+.|++.|-++ .| ... +.-.+.++.|.+..+. ..+..+.. ...+-++
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG--~P-a~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R---~~~~dId 171 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVG--FP-GSS----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIAR---CKKRDIE 171 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--CC-CCC----HHHHHHHHHHHHhcccccccccccceEEeeecc---cCHhhHH
Confidence 3677888999999999999988773 33 222 3334556666543211 12332222 1233444
Q ss_pred HHHHc----CCCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeCCCC-HHHHHHHHHHH
Q 018731 201 TLVHS----GLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLGES-DDDLKEAMADL 272 (351)
Q Consensus 201 ~L~~a----G~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGlgEt-~e~~~~~l~~l 272 (351)
...++ |.++|.+.+-+.+.. ...++ .+....+...+.++.+++ .|+. +..+.-.+ +.+ .+.+.+.++.+
T Consensus 172 ~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~--~G~~~v~f~~EDa-~Rtd~efl~~~~~~a 248 (503)
T PLN03228 172 AAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKS--LGFHDIQFGCEDG-GRSDKEFLCKILGEA 248 (503)
T ss_pred HHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCceEEeccccc-cccCHHHHHHHHHHH
Confidence 44444 778887766555443 22232 112345566678888888 8875 32222222 444 44468888899
Q ss_pred HhCCCCEEee
Q 018731 273 RSIDVDILTL 282 (351)
Q Consensus 273 ~~lg~d~i~i 282 (351)
.+.|++.+.+
T Consensus 249 ~~~Gad~I~l 258 (503)
T PLN03228 249 IKAGATSVGI 258 (503)
T ss_pred HhcCCCEEEE
Confidence 9999998776
No 201
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=94.30 E-value=3.6 Score=36.99 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=77.0
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~--i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
+...+.++++.+.+.|++.+.+-=-+....|+- .-=.++++.+++..++ +.++..+.+ .+..++.++++|.+.
T Consensus 14 d~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~--tfg~~~i~~lr~~~~~~~~dvHLMv~~---P~~~i~~~~~~gad~ 88 (223)
T PRK08745 14 DFARLGEEVDNVLKAGADWVHFDVMDNHYVPNL--TIGPMVCQALRKHGITAPIDVHLMVEP---VDRIVPDFADAGATT 88 (223)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCCc--ccCHHHHHHHHhhCCCCCEEEEeccCC---HHHHHHHHHHhCCCE
Confidence 345677888888889999887632222112321 1113466777764223 455554432 357899999999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
|++..|+.. . ..++++.+|+ .|++ +++.+..+-..+.+...+. .+|.|.++ -..|
T Consensus 89 I~~H~Ea~~-----------~---~~~~l~~Ir~--~g~k--~GlalnP~T~~~~i~~~l~-----~vD~VlvM-tV~P 143 (223)
T PRK08745 89 ISFHPEASR-----------H---VHRTIQLIKS--HGCQ--AGLVLNPATPVDILDWVLP-----ELDLVLVM-SVNP 143 (223)
T ss_pred EEEcccCcc-----------c---HHHHHHHHHH--CCCc--eeEEeCCCCCHHHHHHHHh-----hcCEEEEE-EECC
Confidence 999888621 1 2355667777 7875 5555554545555554443 46777775 3345
No 202
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.26 E-value=1.7 Score=43.60 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.+..+.++.+.+.|++.|++-.-+. ....+.++++.|++.+|++.+-+ ++..+.+....|.++|+|.|.++
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g------~~~~~~~~i~~i~~~~~~~~vi~---g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHG------HQVKMISAIKAVRALDLGVPIVA---GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCC------CcHHHHHHHHHHHHHCCCCeEEE---eccCCHHHHHHHHHhCCCEEEEC
Confidence 4567788888999999999854432 13789999999999988876543 33458999999999999999876
Q ss_pred hhchHHH-HhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 214 IETVKRL-QRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 214 ies~~~~-~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
+-...-. .+.+.+- .....-.++..+.+++ .|+.+-++ |=-.+..|+.+.+ .+|.+.+.++.++
T Consensus 295 ~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~--~~~~viad---Ggi~~~~di~kal----a~GA~~vm~g~~~ 360 (475)
T TIGR01303 295 VGPGAMCTTRMMTGVGRPQFSAVLECAAEARK--LGGHVWAD---GGVRHPRDVALAL----AAGASNVMVGSWF 360 (475)
T ss_pred CcCCccccCccccCCCCchHHHHHHHHHHHHH--cCCcEEEe---CCCCCHHHHHHHH----HcCCCEEeechhh
Confidence 6543321 1222210 2355666777777777 67653332 1125667776654 4899998887655
No 203
>PRK15452 putative protease; Provisional
Probab=94.25 E-value=4 Score=40.58 Aligned_cols=118 Identities=7% Similarity=0.035 Sum_probs=71.9
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCH------HHHHHHHHcCC
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL------RAVETLVHSGL 207 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~----~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~------e~l~~L~~aG~ 207 (351)
+.++.+.+.|++.|++.+... .+. +...+.+.+.++..++. +..+.+..|....+. +.++.+.++|+
T Consensus 14 e~l~aAi~~GADaVY~G~~~~-~~R~~~~~f~~edl~eav~~ah~~--g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gv 90 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRY-SLRVRNNEFNHENLALGINEAHAL--GKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKP 90 (443)
T ss_pred HHHHHHHHCCCCEEEECCCcc-chhhhccCCCHHHHHHHHHHHHHc--CCEEEEEecCcCCHHHHHHHHHHHHHHHhCCC
Confidence 445666788999999955321 110 11246788888888876 455544344333222 34777888899
Q ss_pred CeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 208 DVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 208 ~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|.|.++ + +..+..+++.++++.+.++.-+.. -+ ..+++++.++|++.+.+.
T Consensus 91 DgvIV~----------------d----~G~l~~~ke~~p~l~ih~stqlni-~N----~~a~~f~~~lG~~rvvLS 141 (443)
T PRK15452 91 DALIMS----------------D----PGLIMMVREHFPEMPIHLSVQANA-VN----WATVKFWQQMGLTRVILS 141 (443)
T ss_pred CEEEEc----------------C----HHHHHHHHHhCCCCeEEEEecccC-CC----HHHHHHHHHCCCcEEEEC
Confidence 987442 1 133444555446887766665433 12 356688889999988873
No 204
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=94.22 E-value=4.7 Score=37.54 Aligned_cols=170 Identities=16% Similarity=0.121 Sum_probs=93.5
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++...+.+..-|.-.+... +...+.+.+..++....+.. .+.|.+ .-|.-.+.+.++...++|++.|.
T Consensus 27 n~e~~~avi~aAe~~~~Pvii~~~~~~--~~~~~~~~~~~~~~~~a~~~-~vpv~l-HlDH~~~~e~i~~Al~~G~tsVm 102 (281)
T PRK06806 27 NMEMVMGAIKAAEELNSPIILQIAEVR--LNHSPLHLIGPLMVAAAKQA-KVPVAV-HFDHGMTFEKIKEALEIGFTSVM 102 (281)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcch--hccCChHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHcCCCEEE
Confidence 356666777777777766554443322 22223567777777666543 344433 33333478999999999999996
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee-eee-------C-CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI-MLG-------L-GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-IvG-------l-gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+---+.+. ....+...+..+.+++ .|+.+.+.+ -+| . |.+..+..+..+++++.|+|.+.+
T Consensus 103 ~d~s~~~~--------~eni~~t~~v~~~a~~--~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAv 172 (281)
T PRK06806 103 FDGSHLPL--------EENIQKTKEIVELAKQ--YGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAV 172 (281)
T ss_pred EcCCCCCH--------HHHHHHHHHHHHHHHH--cCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEE
Confidence 53111110 1122333455556666 788776653 344 1 222335556667777899999988
Q ss_pred --ecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccC
Q 018731 283 --GQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (351)
Q Consensus 283 --~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~ 322 (351)
++. .+|.. ....+. ++.++++.+..+...+.+|
T Consensus 173 aiG~~-hg~~~---~~~~l~---~~~L~~i~~~~~iPlV~hG 207 (281)
T PRK06806 173 AIGNA-HGMYN---GDPNLR---FDRLQEINDVVHIPLVLHG 207 (281)
T ss_pred ccCCC-CCCCC---CCCccC---HHHHHHHHHhcCCCEEEEC
Confidence 422 23321 122233 4444444444555555544
No 205
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.05 E-value=2.6 Score=37.27 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=78.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
++++..+.++.+.+.|++.+-+|--+ +...+.++.+++.+|++.|-+- ..++.+.++...++|.+.+
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t---------~~a~~~i~~l~~~~~~~~vGAG---TVl~~~~a~~a~~aGA~Fi- 84 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRT---------PVALDAIRLLRKEVPDALIGAG---TVLNPEQLRQAVDAGAQFI- 84 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC---------ccHHHHHHHHHHHCCCCEEEEE---eCCCHHHHHHHHHcCCCEE-
Confidence 56888999999999999988776432 2456788888888888777653 3468999999999999976
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+. |..+. +.++.+++ .|+.+ +.| --|..|+... .+.|.+.+-+|
T Consensus 85 ------------vs-P~~~~----~v~~~~~~--~~i~~----iPG-~~TptEi~~A----~~~Ga~~vKlF 128 (204)
T TIGR01182 85 ------------VS-PGLTP----ELAKHAQD--HGIPI----IPG-VATPSEIMLA----LELGITALKLF 128 (204)
T ss_pred ------------EC-CCCCH----HHHHHHHH--cCCcE----ECC-CCCHHHHHHH----HHCCCCEEEEC
Confidence 22 33332 55667777 77753 334 3566676544 46888887775
No 206
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.95 E-value=3.7 Score=36.24 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=77.3
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.++..+.++.+.+.|++.+=+|--++ ...+.++.+++.+|++.|.+- ..++.+.++...++|.+.+
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp---------~a~~~I~~l~~~~~~~~vGAG---TVl~~e~a~~ai~aGA~Fi- 80 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTP---------AALDAIRAVAAEVEEAIVGAG---TILNAKQFEDAAKAGSRFI- 80 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCc---------cHHHHHHHHHHHCCCCEEeeE---eCcCHHHHHHHHHcCCCEE-
Confidence 568889999999999999877764332 356778888887888777653 3468999999999999976
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+. |..+. +.++.+++ .|+.+ +.| --|..|+... .++|.+.+-+|
T Consensus 81 ------------vS-P~~~~----~vi~~a~~--~~i~~----iPG-~~TptEi~~A----~~~Ga~~vK~F 124 (201)
T PRK06015 81 ------------VS-PGTTQ----ELLAAAND--SDVPL----LPG-AATPSEVMAL----REEGYTVLKFF 124 (201)
T ss_pred ------------EC-CCCCH----HHHHHHHH--cCCCE----eCC-CCCHHHHHHH----HHCCCCEEEEC
Confidence 22 33232 45556667 77653 344 3566676544 46788887775
No 207
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=93.94 E-value=1.8 Score=38.12 Aligned_cols=112 Identities=23% Similarity=0.290 Sum_probs=74.2
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.+.++..+.++.+.+.|++.+=+|--++ ...+.++.+++.+|++.|.+-| .++.+.++...++|.+.+
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t~---------~a~~~I~~l~~~~p~~~vGAGT---V~~~e~a~~a~~aGA~Fi 84 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRTP---------NALEAIEALRKEFPDLLVGAGT---VLTAEQAEAAIAAGAQFI 84 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTST---------THHHHHHHHHHHHTTSEEEEES-----SHHHHHHHHHHT-SEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCc---------cHHHHHHHHHHHCCCCeeEEEe---ccCHHHHHHHHHcCCCEE
Confidence 3568889999999999999887765332 3467888888888998876533 358999999999999976
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+. |..+. +.++.+++ .|+.+ +.| --|..|+... .++|.+.+-+|
T Consensus 85 -------------vS-P~~~~----~v~~~~~~--~~i~~----iPG-~~TptEi~~A----~~~G~~~vK~F 128 (196)
T PF01081_consen 85 -------------VS-PGFDP----EVIEYARE--YGIPY----IPG-VMTPTEIMQA----LEAGADIVKLF 128 (196)
T ss_dssp -------------EE-SS--H----HHHHHHHH--HTSEE----EEE-ESSHHHHHHH----HHTT-SEEEET
T ss_pred -------------EC-CCCCH----HHHHHHHH--cCCcc----cCC-cCCHHHHHHH----HHCCCCEEEEe
Confidence 22 33222 45556777 77764 333 2466776554 46888888884
No 208
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.73 E-value=1.7 Score=43.70 Aligned_cols=135 Identities=17% Similarity=0.266 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+++.+.++.+.+.|++.|++-..+.. ...+.++++.||+.+|++.|-+ .+. .+.+....|.++|+|.|-+|
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~------~~~~~~~i~~ik~~~p~~~v~a--gnv-~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH------QEKMLEALRAVRALDPGVPIVA--GNV-VTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc------cHHHHHHHHHHHHHCCCCeEEe--ecc-CCHHHHHHHHHcCCCEEEEC
Confidence 45677888888999999888544331 2689999999999999876543 222 37899999999999999877
Q ss_pred hhchHH-HHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 214 IETVKR-LQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 214 ies~~~-~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
+=+..- ..+.+.+- ...+.-+.+..+.+++ .|+.+-++ |=-.+..++.+.+. +|.+.+.++.++
T Consensus 297 ig~gsictt~~~~~~~~p~~~av~~~~~~~~~--~~~~via~---ggi~~~~~~~~al~----~ga~~v~~g~~~ 362 (479)
T PRK07807 297 VGPGAMCTTRMMTGVGRPQFSAVLECAAAARE--LGAHVWAD---GGVRHPRDVALALA----AGASNVMIGSWF 362 (479)
T ss_pred ccCCcccccccccCCchhHHHHHHHHHHHHHh--cCCcEEec---CCCCCHHHHHHHHH----cCCCeeeccHhh
Confidence 655332 11222210 1244445555555555 56654332 22356677766654 799988887655
No 209
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=93.69 E-value=2.7 Score=38.64 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCC-CHHHHHHHHHHHHhCCCCEEee
Q 018731 227 PRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGE-SDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 227 ~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgE-t~e~~~~~l~~l~~lg~d~i~i 282 (351)
.+.+.++.++.++.+++ .+..+-..+|.-++. -.--+.+.++.+++.|+|.+-+
T Consensus 74 ~g~t~~~~lel~~~~r~--~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv 128 (265)
T COG0159 74 AGVTLEDTLELVEEIRA--KGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV 128 (265)
T ss_pred CCCCHHHHHHHHHHHHh--cCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 36788888888888887 444332323322221 1122345677777888887655
No 210
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.52 E-value=3.8 Score=36.50 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=74.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC---CCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK---PDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~---p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
+.++....++.+.+.|++-+=+|--.+ ...+.++.+++.+ |++.|.+ +..++.+.++...++|.+
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~---------~a~~~i~~l~~~~~~~p~~~vGa---GTV~~~~~~~~a~~aGA~ 90 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNP---------FASEVIKELVELYKDDPEVLIGA---GTVLDAVTARLAILAGAQ 90 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCc---------cHHHHHHHHHHHcCCCCCeEEee---eeCCCHHHHHHHHHcCCC
Confidence 567888999999999999776653322 3567788888776 4566654 234689999999999999
Q ss_pred eeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.+- . |..+. +.++.+++ .|+. ++.| -.|..|+.+.+ +.|+|.+.+|
T Consensus 91 Fiv-------------s-P~~~~----~v~~~~~~--~~i~----~iPG-~~T~~E~~~A~----~~Gad~vklF 136 (213)
T PRK06552 91 FIV-------------S-PSFNR----ETAKICNL--YQIP----YLPG-CMTVTEIVTAL----EAGSEIVKLF 136 (213)
T ss_pred EEE-------------C-CCCCH----HHHHHHHH--cCCC----EECC-cCCHHHHHHHH----HcCCCEEEEC
Confidence 762 2 33332 44455666 6765 3445 35667765553 5888888874
No 211
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=93.24 E-value=4.8 Score=36.10 Aligned_cols=163 Identities=12% Similarity=0.151 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++.+.+.|+++++++.-+...... ..-.++++.+.+.. ++.+.+ .++..+.+.++.+.++|++.+-++
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~---~~n~~~~~~i~~~~-~~pv~~--~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGR---EPLFELISNLAEEC-FMPLTV--GGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCC---CCCHHHHHHHHHhC-CCCEEE--ECCCCCHHHHHHHHHcCCCEEEEC
Confidence 367778888888999999997765421111 12345666666643 345433 445557888888999999998777
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC----------C---CCHHHHHHHHHHHHhCCCCEE
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL----------G---ESDDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl----------g---Et~e~~~~~l~~l~~lg~d~i 280 (351)
-...+ +.+...+..+...+ ..+.++.++--|+ | ++..+..+.++.+.+.|++.+
T Consensus 104 ~~~l~-----------~~~~~~~~~~~~~~--~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i 170 (232)
T TIGR03572 104 TAALE-----------NPDLIEEAARRFGS--QCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEI 170 (232)
T ss_pred hhHhc-----------CHHHHHHHHHHcCC--ceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEE
Confidence 33321 12222222222211 1233444433321 1 234456678888889999998
Q ss_pred eeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccCc
Q 018731 281 TLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGP 323 (351)
Q Consensus 281 ~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~ 323 (351)
.+.. +.++... ... .++.++++.+..+..-+.+|-
T Consensus 171 ~i~~-i~~~g~~----~g~---~~~~~~~i~~~~~ipvia~GG 205 (232)
T TIGR03572 171 LLNS-IDRDGTM----KGY---DLELIKTVSDAVSIPVIALGG 205 (232)
T ss_pred EEeC-CCccCCc----CCC---CHHHHHHHHhhCCCCEEEECC
Confidence 8853 2222111 112 244455555555555555543
No 212
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=93.19 E-value=6 Score=36.31 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=48.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccC-CCCC---C-CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVD-RDDI---P-DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~-~~~l---~-~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+++++.+.++...+.|+..|-+.|.. ++.. . +.+.+++..+++.+++.. ++.+.+=| .+++.++.-.++
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiDT----~~~~vi~~al~~ 94 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVDT----YRAEVARAALEA 94 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEeC----CCHHHHHHHHHc
Confidence 567889999999999999999884321 1111 1 112345777888887653 44443312 256777777777
Q ss_pred CCCeee
Q 018731 206 GLDVFA 211 (351)
Q Consensus 206 G~~~i~ 211 (351)
|.+.|+
T Consensus 95 G~~iIN 100 (257)
T TIGR01496 95 GADIIN 100 (257)
T ss_pred CCCEEE
Confidence 777765
No 213
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=93.15 E-value=6.7 Score=35.77 Aligned_cols=124 Identities=16% Similarity=0.163 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC-HHHHHHHHHcCCCeeecc
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~-~e~l~~L~~aG~~~i~~~ 213 (351)
.+.+.++.+.+.|++.|+|.--+++.-- +.+.+.++++..... .++++-. -|...+ .+.++.|.+.|+++|--+
T Consensus 74 ~M~~di~~~~~~GadGvV~G~L~~dg~v--D~~~~~~Li~~a~~~--~vTFHRA-fD~~~d~~~al~~l~~lG~~rILTS 148 (248)
T PRK11572 74 AMLEDIATVRELGFPGLVTGVLDVDGHV--DMPRMRKIMAAAGPL--AVTFHRA-FDMCANPLNALKQLADLGVARILTS 148 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeeECCCCCc--CHHHHHHHHHHhcCC--ceEEech-hhccCCHHHHHHHHHHcCCCEEECC
Confidence 3456777788899999998554432112 246677777665432 3344310 011113 478999999999998321
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+...+..+-++.|+.+.+...|. . +|.|=|=+.+.+.+. .+.|+..++.+
T Consensus 149 ------------Gg~~~a~~g~~~L~~lv~~a~~~---~-Im~GgGV~~~Nv~~l----~~tG~~~~H~s 198 (248)
T PRK11572 149 ------------GQQQDAEQGLSLIMELIAASDGP---I-IMAGAGVRLSNLHKF----LDAGVREVHSS 198 (248)
T ss_pred ------------CCCCCHHHHHHHHHHHHHhcCCC---E-EEeCCCCCHHHHHHH----HHcCCCEEeeC
Confidence 12235666666666666533342 1 889989999988774 25899888874
No 214
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.95 E-value=5.9 Score=35.54 Aligned_cols=115 Identities=18% Similarity=0.146 Sum_probs=74.3
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.++..+.++.+.+.|++.+=+|--++. ..+.+.++.+..++.+|++.|.+- ..++.+.++...++|.+.+
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~-----a~~~i~~l~~~~~~~~p~~~vGaG---TVl~~e~a~~a~~aGA~Fi- 95 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDF-----AHEVFAELVKYAAKELPGMILGVG---SIVDAATAALYIQLGANFI- 95 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCc-----HHHHHHHHHHHHHhhCCCeEEeeE---eCcCHHHHHHHHHcCCCEE-
Confidence 5678889999999999997777643332 134555665666666787777653 3468999999999999976
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+. |..+. +.++.+++ .|+.+ +.| --|..|+... .++|.+.+-+|
T Consensus 96 ------------Vs-P~~~~----~v~~~~~~--~~i~~----iPG-~~TpsEi~~A----~~~Ga~~vKlF 139 (222)
T PRK07114 96 ------------VT-PLFNP----DIAKVCNR--RKVPY----SPG-CGSLSEIGYA----EELGCEIVKLF 139 (222)
T ss_pred ------------EC-CCCCH----HHHHHHHH--cCCCE----eCC-CCCHHHHHHH----HHCCCCEEEEC
Confidence 12 33232 44455666 66652 333 3456665444 45777776664
No 215
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=92.90 E-value=6.4 Score=35.95 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++.+.+.|++.++++.-+...- +...-.++++.+++.. ++.+.+ .++..+.+.++.+.++|++.+.+|
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~~i~~i~~~~-~~pv~~--~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE---GRTTMIDVVERTAETV-FIPLTV--GGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHHHHHHHHHhc-CCCEEE--ECCCCCHHHHHHHHHcCCCEEEEC
Confidence 4677788888889999999976654211 1234567777787753 445443 456668999999999999999887
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCC--CCeEEEeee-------------e--eCCCCHHHHHHHHHHHHhCC
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKK--GLITKSSIM-------------L--GLGESDDDLKEAMADLRSID 276 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~--Gi~v~~~~I-------------v--GlgEt~e~~~~~l~~l~~lg 276 (351)
-..... . +.++.+.+.++ -+.++.++- + |..++.++..+.++.+.+.|
T Consensus 104 t~~~~~-----------p----~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G 168 (254)
T TIGR00735 104 TAAVKN-----------P----ELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLG 168 (254)
T ss_pred hhHhhC-----------h----HHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcC
Confidence 544322 1 11112221111 133344321 1 11344667778888899999
Q ss_pred CCEEeee
Q 018731 277 VDILTLG 283 (351)
Q Consensus 277 ~d~i~i~ 283 (351)
++.+.+.
T Consensus 169 ~~~iivt 175 (254)
T TIGR00735 169 AGEILLT 175 (254)
T ss_pred CCEEEEe
Confidence 9988874
No 216
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=92.76 E-value=2.9 Score=38.82 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.++--+.+- + .-+.+++.+.++.+.+...| ...+++|. +.+.++..+.++.+.++
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstGE~-~------~lt~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~~~~~~~~a~~a~~~ 94 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTGES-P------TLSDEEHEAVIEAVVEAVNG---RVPVIAGTGSNNTAEAIELTKRAEKA 94 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCcch-h------hCCHHHHHHHHHHHHHHhCC---CCcEEeccCCccHHHHHHHHHHHHHc
Confidence 56777778888887654222211 1 23667777777766663322 23467788 56788888888888888
Q ss_pred CCCEEeee
Q 018731 276 DVDILTLG 283 (351)
Q Consensus 276 g~d~i~i~ 283 (351)
|+|.+.+.
T Consensus 95 G~d~v~~~ 102 (284)
T cd00950 95 GADAALVV 102 (284)
T ss_pred CCCEEEEc
Confidence 88877663
No 217
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=92.61 E-value=4.7 Score=37.06 Aligned_cols=77 Identities=12% Similarity=0.149 Sum_probs=47.5
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCC-CCCC----CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDR-DDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~-~~l~----~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~ 204 (351)
..+.+++.+.+....+.|+.-|-+.|... +... ..+.+++..+++.+++.. ++.+.+ |. .+.+.++.-.+
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plSI---DT-~~~~v~e~al~ 94 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLISV---DT-FRAEVARAALE 94 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEEE---eC-CCHHHHHHHHH
Confidence 35678889999999999999988854221 1111 122346666778777653 333332 21 25677777667
Q ss_pred cCCCeee
Q 018731 205 SGLDVFA 211 (351)
Q Consensus 205 aG~~~i~ 211 (351)
+|.+.|+
T Consensus 95 ~G~~iIN 101 (257)
T cd00739 95 AGADIIN 101 (257)
T ss_pred hCCCEEE
Confidence 7777665
No 218
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=92.61 E-value=2.8 Score=37.56 Aligned_cols=129 Identities=19% Similarity=0.176 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++.+.+.|++.++++..+.. +.. .....++++.+.+.. ++.+.+ .++..+.+.++.+.++|++.+.++
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~-~~g--~~~~~~~i~~i~~~~-~~pv~~--~GGI~~~ed~~~~~~~Ga~~vilg 103 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGA-KAG--KPVNLELIEAIVKAV-DIPVQV--GGGIRSLETVEALLDAGVSRVIIG 103 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcc-ccC--CcccHHHHHHHHHHC-CCCEEE--cCCcCCHHHHHHHHHcCCCEEEEC
Confidence 46777888888899999999876531 111 124466777776653 445443 566678899999999999998776
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee------eeeC-CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI------MLGL-GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~------IvGl-gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
-...+. .+...+..+...+ .+.++.++ +-|. ..+..+..+.++.+.+.|++.+.+
T Consensus 104 ~~~l~~-----------~~~l~ei~~~~~~---~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~ 165 (233)
T PRK00748 104 TAAVKN-----------PELVKEACKKFPG---KIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIY 165 (233)
T ss_pred chHHhC-----------HHHHHHHHHHhCC---CceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEE
Confidence 444322 1112222222211 23333332 1233 334455667788888999997666
No 219
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=92.60 E-value=0.88 Score=43.98 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=87.2
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhc
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET 216 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies 216 (351)
....+.+...|++.|+|-+... +..+..+.+++||+.+|++.|-. .+. .+.+..+.|.++|+|.+-+|+-+
T Consensus 253 K~rl~ll~~aGvdvviLDSSqG------nS~~qiemik~iK~~yP~l~Via--GNV-VT~~qa~nLI~aGaDgLrVGMGs 323 (503)
T KOG2550|consen 253 KERLDLLVQAGVDVVILDSSQG------NSIYQLEMIKYIKETYPDLQIIA--GNV-VTKEQAANLIAAGADGLRVGMGS 323 (503)
T ss_pred hHHHHHhhhcCCcEEEEecCCC------cchhHHHHHHHHHhhCCCceeec--cce-eeHHHHHHHHHccCceeEecccc
Confidence 4455566788999999965443 23688999999999999987632 222 48899999999999999887766
Q ss_pred hHH-H-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 217 VKR-L-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 217 ~~~-~-~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
.+- . .+.+.......-.+.+..+.+++ .|+.+-++- | -++..++.+. ..+|.+.+..+.+|
T Consensus 324 GSiCiTqevma~GrpQ~TAVy~va~~A~q--~gvpviADG--G-iq~~Ghi~KA----l~lGAstVMmG~lL 386 (503)
T KOG2550|consen 324 GSICITQKVMACGRPQGTAVYKVAEFANQ--FGVPCIADG--G-IQNVGHVVKA----LGLGASTVMMGGLL 386 (503)
T ss_pred CceeeeceeeeccCCcccchhhHHHHHHh--cCCceeecC--C-cCccchhHhh----hhcCchhheeccee
Confidence 443 1 12221011233457788888888 888865542 1 1344455443 35777777666555
No 220
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=92.58 E-value=5.5 Score=35.88 Aligned_cols=131 Identities=14% Similarity=0.150 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++.+.+.|++.+++..-+.. . .+.....+.++.+.+.. ++.+.+ .++..+.+.++.+.++|++.+.++
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~-~--~~~~~~~~~i~~i~~~~-~~~l~v--~GGi~~~~~~~~~~~~Ga~~v~iG 105 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGA-F--EGERKNAEAIEKIIEAV-GVPVQL--GGGIRSAEDAASLLDLGVDRVILG 105 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhh-h--cCCcccHHHHHHHHHHc-CCcEEE--cCCcCCHHHHHHHHHcCCCEEEEC
Confidence 35677788888899999988543311 1 11234455666666543 444443 556668899999999999999887
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee----e--eeC-CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI----M--LGL-GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~----I--vGl-gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
-+..++ .+.+.+..+.... -.+.++.++ + -|. .++..+..+.++.+.+.|++.+.+.
T Consensus 106 s~~~~~-----------~~~~~~i~~~~g~--~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~ 169 (241)
T PRK13585 106 TAAVEN-----------PEIVRELSEEFGS--ERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFT 169 (241)
T ss_pred hHHhhC-----------hHHHHHHHHHhCC--CcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEE
Confidence 544321 1112222222211 112222222 1 233 2333356677777788999988774
No 221
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=92.55 E-value=0.59 Score=40.12 Aligned_cols=66 Identities=20% Similarity=0.359 Sum_probs=49.2
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++++++.+.|++.|.|- .+. .+.+.++++.++...+.+.+++ .++ ++.+.+..+++.|+|.|++|-
T Consensus 91 ee~~ea~~~g~d~I~lD-----~~~---~~~~~~~v~~l~~~~~~v~ie~--SGG-I~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLD-----NMS---PEDLKEAVEELRELNPRVKIEA--SGG-ITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHHHHHTT-SEEEEE-----S-C---HHHHHHHHHHHHHHTTTSEEEE--ESS-SSTTTHHHHHHTT-SEEEECH
T ss_pred HHHHHHHHhCCCEEEec-----CcC---HHHHHHHHHHHhhcCCcEEEEE--ECC-CCHHHHHHHHhcCCCEEEcCh
Confidence 45666677899999883 233 4789999999988888888876 344 388999999999999998763
No 222
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=92.48 E-value=5 Score=37.32 Aligned_cols=136 Identities=10% Similarity=0.091 Sum_probs=79.6
Q ss_pred CCchhHHHHHHHHHhCC-----CcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh--CCCcEEEEeecCCCCCHHHHHHHH
Q 018731 131 PDPMEPENTAKAIASWG-----VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ--KPDIMVECLTSDFRGDLRAVETLV 203 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G-----~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~--~p~i~i~~~~~~~~~~~e~l~~L~ 203 (351)
.+.++-.++++.+.+.| +++|-+++ +.. ....++.+.+... .++ +... ...+.+-++...
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s-----~~~---~d~~~v~~~~~~~~~~~~--v~~~---~r~~~~die~A~ 84 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFL-----YTE---KDREAVEACLDRGYKFPE--VTGW---IRANKEDLKLVK 84 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecC-----cCh---HHHHHHHHHHHcCCCCCE--EEEE---ecCCHHHHHHHH
Confidence 35677788999999999 99987732 221 3444444444332 233 3322 112567789999
Q ss_pred HcCCCeeecchhchHHHH-hhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC-CCH-----HHHHHHHHHHHhC
Q 018731 204 HSGLDVFAHNIETVKRLQ-RIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG-ESD-----DDLKEAMADLRSI 275 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~~-~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg-Et~-----e~~~~~l~~l~~l 275 (351)
++|++.+.+.+-+.+... +.++ .+....+...+.++.+++ .|+.+..++ -|-. .+. +-+.+.++.+.+.
T Consensus 85 ~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~--~g~~v~~~~-ed~~r~d~~~~v~~~~~~~~~~~~~~ 161 (279)
T cd07947 85 EMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALD--HGIKPRCHL-EDITRADIYGFVLPFVNKLMKLSKES 161 (279)
T ss_pred HcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHH--CCCeEEEEE-EcccCCCcccchHHHHHHHHHHHHHC
Confidence 999999988664444432 2222 112345556667777888 888766554 2221 111 1234455555668
Q ss_pred CCC-EEee
Q 018731 276 DVD-ILTL 282 (351)
Q Consensus 276 g~d-~i~i 282 (351)
|++ .+.+
T Consensus 162 G~~~~i~l 169 (279)
T cd07947 162 GIPVKIRL 169 (279)
T ss_pred CCCEEEEe
Confidence 998 5766
No 223
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=92.43 E-value=3.1 Score=37.21 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=77.8
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+.+.|++.+++..-+.. +.. ...-.++++.+++.. ++.+. ..++..+.+.++.+.++|++.+.+
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~-~~~--~~~~~~~i~~i~~~~-~~pv~--~~GgI~~~e~~~~~~~~Gad~vvi 101 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGA-KGG--EPVNLELIEEIVKAV-GIPVQ--VGGGIRSLEDIERLLDLGVSRVII 101 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCcc-ccC--CCCCHHHHHHHHHhc-CCCEE--EeCCcCCHHHHHHHHHcCCCEEEE
Confidence 457788888888899999998754431 111 123456777777753 34443 355666889999999999999877
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeee------eC-CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML------GL-GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv------Gl-gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+-..+.+ .+...+..+...+ .-+.+..++-. |. ..+..+..+.++.+.+.|++.+.+.
T Consensus 102 gs~~l~d-----------p~~~~~i~~~~g~--~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 102 GTAAVKN-----------PELVKELLKEYGG--ERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred CchHHhC-----------hHHHHHHHHHcCC--ceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 6443321 1112222222111 12223333221 21 2344566677888889999988774
No 224
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=92.35 E-value=6.6 Score=33.69 Aligned_cols=129 Identities=13% Similarity=0.118 Sum_probs=78.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC--cEEE--EeecC----CCCCHHHHHHHH
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVE--CLTSD----FRGDLRAVETLV 203 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~--i~i~--~~~~~----~~~~~e~l~~L~ 203 (351)
+.+.+.+.++.+.+.|++.+.++| ++++.+++..++ +.+- +..+. .....+.++..+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~ 75 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAI 75 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 567788889999999999988865 233333333222 3332 22221 111247788889
Q ss_pred HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhC-CCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSK-KGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~-~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
++|.|.+.+.. ..+.. +..+.+...+.++.+.+.. .++.+....+.+.--+.+++.+..+.+.+.|++.+..
T Consensus 76 ~~Gad~i~v~~----~~~~~---~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~ 148 (201)
T cd00945 76 DLGADEIDVVI----NIGSL---KEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKT 148 (201)
T ss_pred HcCCCEEEEec----cHHHH---hCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 99999986532 22211 1223566666666666521 3787766666543336777887777778889998776
No 225
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=92.33 E-value=0.98 Score=43.65 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=84.4
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCC----CCCcHHHHHHHHHHHHHhCCCcEEEEeec-----CCC-CC----
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDI----PDGGSGHFARTVKAMKKQKPDIMVECLTS-----DFR-GD---- 195 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l----~~~~~~~~~~li~~ik~~~p~i~i~~~~~-----~~~-~~---- 195 (351)
++..++.+-+++.+.+.|+-.+-+-||-..+- -+ ++=++-++++|+..|+..+..+-. ++. -.
T Consensus 24 Rmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLn---EDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvV 100 (472)
T COG5016 24 RMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLN---EDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVV 100 (472)
T ss_pred HHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhc---CCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHH
Confidence 35678888889999999999887777653111 11 223456777887776643321110 110 01
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHH
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLR 273 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~ 273 (351)
+..+++..+.|+|.+-+ +|.++ +......+++.+++ .|..+...+-+-. -.|.+-+.+..+.+.
T Consensus 101 e~Fv~ka~~nGidvfRi----FDAlN--------D~RNl~~ai~a~kk--~G~h~q~~i~YT~sPvHt~e~yv~~akel~ 166 (472)
T COG5016 101 EKFVEKAAENGIDVFRI----FDALN--------DVRNLKTAIKAAKK--HGAHVQGTISYTTSPVHTLEYYVELAKELL 166 (472)
T ss_pred HHHHHHHHhcCCcEEEe----chhcc--------chhHHHHHHHHHHh--cCceeEEEEEeccCCcccHHHHHHHHHHHH
Confidence 45667777788887733 23322 22223344555666 6776655554444 688899999999999
Q ss_pred hCCCCEEeee
Q 018731 274 SIDVDILTLG 283 (351)
Q Consensus 274 ~lg~d~i~i~ 283 (351)
++|+|+|.+.
T Consensus 167 ~~g~DSIciK 176 (472)
T COG5016 167 EMGVDSICIK 176 (472)
T ss_pred HcCCCEEEee
Confidence 9999988874
No 226
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.26 E-value=3.8 Score=38.37 Aligned_cols=76 Identities=21% Similarity=0.147 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID 276 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg 276 (351)
..++.+.+.|++.+.++=-|.+- ..-+.+++.+.++.+.+.-.| ...+|+|.|.+.++..+.++.+.++|
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~-------~~Lt~eEr~~v~~~~~~~~~g---~~pvi~gv~~~t~~ai~~a~~a~~~G 99 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEF-------FSLTPAEYEQVVEIAVSTAKG---KVPVYTGVGGNTSDAIEIARLAEKAG 99 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCc-------ccCCHHHHHHHHHHHHHHhCC---CCcEEEecCccHHHHHHHHHHHHHhC
Confidence 56667777788887653222211 123666666666666553223 23456666546677777778888888
Q ss_pred CCEEee
Q 018731 277 VDILTL 282 (351)
Q Consensus 277 ~d~i~i 282 (351)
+|.+.+
T Consensus 100 adav~~ 105 (296)
T TIGR03249 100 ADGYLL 105 (296)
T ss_pred CCEEEE
Confidence 887655
No 227
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=92.26 E-value=6 Score=35.36 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=83.2
Q ss_pred HHHHHHHhCCCcEEEE--eccCCCCCC-----CCcHHHHHHHHHHHHHhCCCc--EEEE-eecC-CCCCHHHHHHHHHcC
Q 018731 138 NTAKAIASWGVDYIVL--TSVDRDDIP-----DGGSGHFARTVKAMKKQKPDI--MVEC-LTSD-FRGDLRAVETLVHSG 206 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~l--tgg~~~~l~-----~~~~~~~~~li~~ik~~~p~i--~i~~-~~~~-~~~~~e~l~~L~~aG 206 (351)
+.++.+...+++-+.+ .|.+ +.+. +...+.+...++.+++....+ +|.+ ++-+ .....+.++.|.+..
T Consensus 101 ~~~eklk~~~vdvvsLDfvgDn-~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~ 179 (275)
T COG1856 101 SDLEKLKEELVDVVSLDFVGDN-DVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYE 179 (275)
T ss_pred HHHHHHHHhcCcEEEEeecCCh-HHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCC
Confidence 3455566667776644 2322 1111 122456777788888763222 1221 1111 123468899999999
Q ss_pred CCeeecch--hc-hHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 207 LDVFAHNI--ET-VKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 207 ~~~i~~~i--es-~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.|.+-+.+ -+ ..+|.. . |..+.++++++++.|++.|+| .+..+-|=-.||..-. .=.++..+|+|.+++
T Consensus 180 ~DalVl~vliPtpGtkm~~-~--~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk---~d~~av~~gVd~It~ 251 (275)
T COG1856 180 PDALVLVVLIPTPGTKMGN-S--PPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVK---LDKEAVLAGVDRITF 251 (275)
T ss_pred CCeEEEEEEecCCchhccC-C--CCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHH---HHHHHHHcCCceeec
Confidence 99876542 22 223322 2 456999999999999999988 6666665544665444 445667899999887
No 228
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=92.18 E-value=1.6 Score=38.58 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=82.4
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCc--EEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI--MVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i--~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
+...+.++++.+.+.|++.+.+-=-+....++ ..-=.++++.|++. +++ .+++.+.+ ....++.++++|.+.
T Consensus 10 d~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn--~~~g~~~i~~i~~~-~~~~~DvHLMv~~---P~~~i~~~~~~g~~~ 83 (201)
T PF00834_consen 10 DFLNLEEEIKRLEEAGADWLHIDIMDGHFVPN--LTFGPDIIKAIRKI-TDLPLDVHLMVEN---PERYIEEFAEAGADY 83 (201)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSS--B-B-HHHHHHHHTT-SSSEEEEEEESSS---GGGHHHHHHHHT-SE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecccccCCc--ccCCHHHHHHHhhc-CCCcEEEEeeecc---HHHHHHHHHhcCCCE
Confidence 45567888899999999987652222211232 11224677778775 343 45555432 347899999999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC-
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP- 288 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P- 288 (351)
|++.+|+.+. . .+.++.+++ .|+++ ++.+..+...+.+.. ++ + .+|.+.++ ...|
T Consensus 84 i~~H~E~~~~-----------~---~~~i~~ik~--~g~k~--GialnP~T~~~~~~~---~l-~-~vD~VlvM-sV~PG 139 (201)
T PF00834_consen 84 ITFHAEATED-----------P---KETIKYIKE--AGIKA--GIALNPETPVEELEP---YL-D-QVDMVLVM-SVEPG 139 (201)
T ss_dssp EEEEGGGTTT-----------H---HHHHHHHHH--TTSEE--EEEE-TTS-GGGGTT---TG-C-CSSEEEEE-SS-TT
T ss_pred EEEcccchhC-----------H---HHHHHHHHH--hCCCE--EEEEECCCCchHHHH---Hh-h-hcCEEEEE-EecCC
Confidence 9998885322 2 245567777 88864 444433333333322 22 2 58888886 3356
Q ss_pred CCCcccccCCCCHHHHHHHHHHHHhcCc
Q 018731 289 TPLHLTVKEYVTPEKFDFWKAYGESIGF 316 (351)
Q Consensus 289 Tp~~~~~~~~v~~~e~~~~~~~~~~~G~ 316 (351)
...+. -..-.-+...+++++..+.|+
T Consensus 140 ~~Gq~--f~~~~~~KI~~l~~~~~~~~~ 165 (201)
T PF00834_consen 140 FGGQK--FIPEVLEKIRELRKLIPENGL 165 (201)
T ss_dssp TSSB----HGGHHHHHHHHHHHHHHHTC
T ss_pred CCccc--ccHHHHHHHHHHHHHHHhcCC
Confidence 22220 011122344456666666453
No 229
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=1.2 Score=42.69 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=65.2
Q ss_pred EEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE--EEeeeeeCCCCHH
Q 018731 186 ECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT--KSSIMLGLGESDD 263 (351)
Q Consensus 186 ~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v--~~~~IvGlgEt~e 263 (351)
+.+.|.+ +.+.+....++|.|.|++|.....-..+. ...+.+++.+.++.+++ .|.++ .++..+ +.+..+
T Consensus 8 ell~pag--~l~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~--~gkk~~V~~N~~~-~~~~~~ 79 (347)
T COG0826 8 ELLAPAG--NLEDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHS--AGKKVYVAVNTLL-HNDELE 79 (347)
T ss_pred eeecCCC--CHHHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHH--cCCeEEEEecccc-ccchhh
Confidence 4444543 67889999999999999986522211111 14789999999999999 88863 334333 366677
Q ss_pred HHHHHHHHHHhCCCCEEeee
Q 018731 264 DLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 264 ~~~~~l~~l~~lg~d~i~i~ 283 (351)
.+.+.++.+.++|+|-+-+.
T Consensus 80 ~~~~~l~~l~e~GvDaviv~ 99 (347)
T COG0826 80 TLERYLDRLVELGVDAVIVA 99 (347)
T ss_pred HHHHHHHHHHHcCCCEEEEc
Confidence 78999999999999987664
No 230
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.08 E-value=7.9 Score=34.47 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=52.8
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.++++..+.++.+.+.|++-|=+|--. +.-.+.++.+++.+|++.|-+ +..++.+.++...++|.+.+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~---------~~~~~~I~~l~~~~p~~~IGA---GTVl~~~~a~~a~~aGA~Fi 91 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRT---------PAALEAIRLIAKEVPEALIGA---GTVLNPEQLAQAIEAGAQFI 91 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC---------ccHHHHHHHHHHHCCCCEEEE---eeccCHHHHHHHHHcCCCEE
Confidence 357888999999999999988776211 245678888888888876654 33458899999999999976
No 231
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=92.07 E-value=9.5 Score=34.95 Aligned_cols=132 Identities=11% Similarity=0.108 Sum_probs=79.5
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+.+.|+++++++.-+..... ...-.++++.+.+. .++.+.+ .++..+.+.++.+.++|++.+-+
T Consensus 29 ~~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~---~~~n~~~i~~i~~~-~~~pv~~--gGGi~s~~d~~~l~~~G~~~vvi 102 (258)
T PRK01033 29 IGDPINAVRIFNEKEVDELIVLDIDASKRG---SEPNYELIENLASE-CFMPLCY--GGGIKTLEQAKKIFSLGVEKVSI 102 (258)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCCCcCC---CcccHHHHHHHHHh-CCCCEEE--CCCCCCHHHHHHHHHCCCCEEEE
Confidence 346778899999999999999876643111 12335667677664 3455543 44555788888889999999987
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC------------CCCHHHHHHHHHHHHhCCCCEE
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL------------GESDDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl------------gEt~e~~~~~l~~l~~lg~d~i 280 (351)
|-.... +.+-+.+.++...+ .-+.++.++--|. ..+..+..+.++.+.+.|++.+
T Consensus 103 gs~~~~-----------~~~~~~~~~~~~~~--~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~i 169 (258)
T PRK01033 103 NTAALE-----------DPDLITEAAERFGS--QSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEI 169 (258)
T ss_pred ChHHhc-----------CHHHHHHHHHHhCC--CcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEE
Confidence 733221 11222222222211 1244555543331 1234456777888889999987
Q ss_pred eee
Q 018731 281 TLG 283 (351)
Q Consensus 281 ~i~ 283 (351)
.+.
T Consensus 170 i~~ 172 (258)
T PRK01033 170 LLN 172 (258)
T ss_pred EEE
Confidence 774
No 232
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=92.04 E-value=9 Score=34.60 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=91.7
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++.+.+......|...|.+= -++|-..-..+++..+.+.++. .+++++. .++++++...+...+.+++-.
T Consensus 25 d~v~aA~~a~~aGAdgITvH--lReDrRHI~d~Dv~~L~~~~~~---~lNlE~a-----~~~em~~ia~~~kP~~vtLVP 94 (239)
T PRK05265 25 DPVRAALIAEQAGADGITVH--LREDRRHIRDRDVRLLRETLKT---ELNLEMA-----ATEEMLDIALEVKPHQVTLVP 94 (239)
T ss_pred CHHHHHHHHHHcCCCEEEec--CCCCcccCCHHHHHHHHHhcCC---CEEeccC-----CCHHHHHHHHHCCCCEEEECC
Confidence 34555666677899988761 1111111112455554444432 4677653 278999999999999999877
Q ss_pred hchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcc
Q 018731 215 ETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHL 293 (351)
Q Consensus 215 es~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~ 293 (351)
|.-.+.. ..--+-....+..-..++.+++ .||.|+..+ .-+. +.++..+++|+|.|-++ |.-+.
T Consensus 95 E~r~E~TTegGldv~~~~~~l~~~i~~L~~--~gIrVSLFi----dP~~----~qi~~A~~~GAd~VELh-----TG~yA 159 (239)
T PRK05265 95 EKREELTTEGGLDVAGQFDKLKPAIARLKD--AGIRVSLFI----DPDP----EQIEAAAEVGADRIELH-----TGPYA 159 (239)
T ss_pred CCCCCccCCccchhhcCHHHHHHHHHHHHH--CCCEEEEEe----CCCH----HHHHHHHHhCcCEEEEe-----chhhh
Confidence 6654432 1000012356677788889999 999865543 2223 44567788999999884 21110
Q ss_pred cccCCCCHHHHHHHH---HHHHhcCcce
Q 018731 294 TVKEYVTPEKFDFWK---AYGESIGFRY 318 (351)
Q Consensus 294 ~~~~~v~~~e~~~~~---~~~~~~G~~~ 318 (351)
.........++++++ +++..+|..-
T Consensus 160 ~a~~~~~~~el~~~~~aa~~a~~lGL~V 187 (239)
T PRK05265 160 DAKTEAEAAELERIAKAAKLAASLGLGV 187 (239)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHcCCEE
Confidence 000112244566554 4556677653
No 233
>PLN02321 2-isopropylmalate synthase
Probab=91.99 E-value=9.6 Score=39.65 Aligned_cols=145 Identities=14% Similarity=0.079 Sum_probs=79.4
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-Cc---EEEEeecCCCCCHHHHHHHHHc
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DI---MVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i---~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+++++-+++++.+.+.|++.|=++. | .....+++.+..+.+.++...+ +. .|..+.. ...+.++...++
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGf--P-~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~r---a~~~dId~A~~a 177 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGF--P-IASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSR---CNKKDIDAAWEA 177 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC--c-CCCccHHHHHHHHHHhcccCCCccccceeeeeehh---ccHHhHHHHHHH
Confidence 36778889999999999999987743 2 1221123333333332221111 11 1222221 245566666666
Q ss_pred C--C--CeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeCCCCHHHHHHHHHHHHhCCCC
Q 018731 206 G--L--DVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLGESDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 206 G--~--~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGlgEt~e~~~~~l~~l~~lg~d 278 (351)
+ . .+|.+-+-+.+-. ...++ .+....+...+.++.+++ .|.. +..+..-+.--+.+.+.+.++.+.+.|++
T Consensus 178 l~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~--~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~ 255 (632)
T PLN02321 178 VKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARS--LGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGAT 255 (632)
T ss_pred hcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCceEEEecccCCCCCHHHHHHHHHHHHHcCCC
Confidence 3 2 2565555444432 23232 012234445567777787 7763 44443333334467778899999999999
Q ss_pred EEee
Q 018731 279 ILTL 282 (351)
Q Consensus 279 ~i~i 282 (351)
.+.+
T Consensus 256 ~I~L 259 (632)
T PLN02321 256 TLNI 259 (632)
T ss_pred EEEe
Confidence 8777
No 234
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=91.98 E-value=5.5 Score=34.64 Aligned_cols=111 Identities=19% Similarity=0.282 Sum_probs=75.2
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
++++..+.++.+.+.|++.|-++--+ ....+.++.+++.+|++.+.+-+ ..+.+.++...++|.+.+.
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~---------~~~~~~i~~l~~~~~~~~iGag~---v~~~~~~~~a~~~Ga~~i~ 81 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRT---------PGALEAIRALRKEFPEALIGAGT---VLTPEQADAAIAAGAQFIV 81 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC---------hhHHHHHHHHHHHCCCCEEEEEe---CCCHHHHHHHHHcCCCEEE
Confidence 46788889999999999998886322 12455888888888776665422 2478999999999999884
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.. ..+ . +.++.+++ .|+ .+|+|.. |.+|+.+. .+.|+|.+.++
T Consensus 82 ~p--------------~~~-~---~~~~~~~~--~~~----~~i~gv~-t~~e~~~A----~~~Gad~i~~~ 124 (190)
T cd00452 82 SP--------------GLD-P---EVVKAANR--AGI----PLLPGVA-TPTEIMQA----LELGADIVKLF 124 (190)
T ss_pred cC--------------CCC-H---HHHHHHHH--cCC----cEECCcC-CHHHHHHH----HHCCCCEEEEc
Confidence 21 112 1 34444455 454 3466754 77765544 35899988874
No 235
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=91.91 E-value=9.3 Score=34.47 Aligned_cols=128 Identities=18% Similarity=0.263 Sum_probs=74.5
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+...+.++++.+.. |++.+.+-=-+....++- .-=.++++.+++.. -.+.++..+.+ .+..++.++++|.+.|
T Consensus 13 d~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~--tfg~~~i~~ir~~t~~~~DvHLMv~~---P~~~i~~~~~aGad~i 86 (229)
T PRK09722 13 DLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNL--TLSPFFVSQVKKLASKPLDVHLMVTD---PQDYIDQLADAGADFI 86 (229)
T ss_pred CHHHHHHHHHHHHh-CCCEEEEecccCccCCCc--ccCHHHHHHHHhcCCCCeEEEEEecC---HHHHHHHHHHcCCCEE
Confidence 34466677777766 888876632222112321 11134666777641 12455554432 3578999999999999
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
++..|+... +..+.++.+++ .|++ +++.+..+-..+.+...+. .+|.|.++ -..|
T Consensus 87 t~H~Ea~~~-------------~~~~~i~~Ik~--~G~k--aGlalnP~T~~~~l~~~l~-----~vD~VLvM-sV~P 141 (229)
T PRK09722 87 TLHPETING-------------QAFRLIDEIRR--AGMK--VGLVLNPETPVESIKYYIH-----LLDKITVM-TVDP 141 (229)
T ss_pred EECccCCcc-------------hHHHHHHHHHH--cCCC--EEEEeCCCCCHHHHHHHHH-----hcCEEEEE-EEcC
Confidence 998885321 12356667777 8875 4555554545555554444 35777775 3345
No 236
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=91.88 E-value=4.1 Score=39.00 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=53.0
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEe-ecCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECL-TSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~-~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++++.+.++.+.+.|+..|+|..-..-..| +.+.++++.+++.. |++.+..- +++.-+.-.-.-...++|++
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P----~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~ 216 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDSAGALLP----EDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGAT 216 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCH----HHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCC
Confidence 45788899999999999999999543332233 78999999999876 56655432 33332233333344579999
Q ss_pred eeecc
Q 018731 209 VFAHN 213 (351)
Q Consensus 209 ~i~~~ 213 (351)
+|-.+
T Consensus 217 ~iD~S 221 (337)
T PRK08195 217 RIDGS 221 (337)
T ss_pred EEEec
Confidence 88544
No 237
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=91.80 E-value=5.1 Score=37.52 Aligned_cols=111 Identities=18% Similarity=0.216 Sum_probs=68.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCC--CCCCCcHHHHHHHHHHHHHhCCC-cEEEE-eecCCCCC----HHHHHHH
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRD--DIPDGGSGHFARTVKAMKKQKPD-IMVEC-LTSDFRGD----LRAVETL 202 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~--~l~~~~~~~~~~li~~ik~~~p~-i~i~~-~~~~~~~~----~e~l~~L 202 (351)
.+..++.+.++.+.+.|++.|++..|+++ +.+.....+-.++++.+|....+ +.|.+ ..|...-. ...+..|
T Consensus 89 ~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~l 168 (291)
T COG0685 89 RNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKRL 168 (291)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHHH
Confidence 35678899999999999999999999874 23321124667889999876545 44442 23443311 2233333
Q ss_pred H---HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 203 V---HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 203 ~---~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
+ ++|.|.+ ..+ .-.+.+.+.+..+.+++ +|+ ..-++.|+
T Consensus 169 krKv~aGAd~~------iTQ-------~~fd~e~~~~~~~~~~~--~g~--~~pI~~Gi 210 (291)
T COG0685 169 KRKVDAGADFF------ITQ-------FFFDVEAFERFAERVRA--AGI--DIPIIPGI 210 (291)
T ss_pred HHHHhcchHHH------HHH-------HccCHHHHHHHHHHHHh--cCC--CCCeeecc
Confidence 3 4555543 111 24577777777778887 776 34455555
No 238
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=91.79 E-value=6.6 Score=36.60 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=42.7
Q ss_pred HHHHHHHHc-CCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHh
Q 018731 197 RAVETLVHS-GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS 274 (351)
Q Consensus 197 e~l~~L~~a-G~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~ 274 (351)
..++.+.+. |++.+.++--|.+- ..-+.+++.+.++.+.+...| ...+|+|. ..+.++..+..+.+++
T Consensus 25 ~~i~~l~~~~Gv~gi~~~GstGE~-------~~Lt~~Er~~~~~~~~~~~~~---~~~viagv~~~~~~~ai~~a~~a~~ 94 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNGSTGEG-------FLLSVEERKQIAEIVAEAAKG---KVTLIAHVGSLNLKESQELAKHAEE 94 (288)
T ss_pred HHHHHHHhcCCCCEEEECcCCcCc-------ccCCHHHHHHHHHHHHHHhCC---CCeEEeccCCCCHHHHHHHHHHHHH
Confidence 456666666 77776543222211 123555666666655543233 24556666 4566667777777777
Q ss_pred CCCCEEee
Q 018731 275 IDVDILTL 282 (351)
Q Consensus 275 lg~d~i~i 282 (351)
.|+|.+.+
T Consensus 95 ~Gad~v~~ 102 (288)
T cd00954 95 LGYDAISA 102 (288)
T ss_pred cCCCEEEE
Confidence 77776655
No 239
>PRK08005 epimerase; Validated
Probab=91.76 E-value=9.1 Score=34.05 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=76.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
++..+.++++++.+.|++.+.+-=-+....++ ..-=.++++.+++.. ..+.++....+ .+..++.++++|.+.|
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN--~tfG~~~i~~l~~~t~~~~DvHLMv~~---P~~~i~~~~~~gad~I 85 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLDIEDTSFINN--ITFGMKTIQAVAQQTRHPLSFHLMVSS---PQRWLPWLAAIRPGWI 85 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc--cccCHHHHHHHHhcCCCCeEEEeccCC---HHHHHHHHHHhCCCEE
Confidence 34567788888999999988763222211232 111135666676642 12455554432 3578999999999999
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
++..|+.+. ..+.++.+|+ .|++ +++-+..+-..+.+...+. .+|.+.++ -..|
T Consensus 86 t~H~Ea~~~--------------~~~~l~~Ik~--~G~k--~GlAlnP~Tp~~~i~~~l~-----~vD~VlvM-sV~P 139 (210)
T PRK08005 86 FIHAESVQN--------------PSEILADIRA--IGAK--AGLALNPATPLLPYRYLAL-----QLDALMIM-TSEP 139 (210)
T ss_pred EEcccCccC--------------HHHHHHHHHH--cCCc--EEEEECCCCCHHHHHHHHH-----hcCEEEEE-EecC
Confidence 998885321 2346667777 8885 4555555555555554443 46777775 3345
No 240
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.73 E-value=11 Score=35.09 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=84.1
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
.+.+...++.+.+.+..-|.-.+... +...+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.+....++|+++|-+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~--~~~~g~~~~~~~~~~~A~~~-~VPV~l-HLDHg~~~e~i~~Ai~~GftSVM~ 103 (284)
T PRK09195 28 LETMQVVVETAAELHSPVIIAGTPGT--FSYAGTEYLLAIVSAAAKQY-HHPLAL-HLDHHEKFDDIAQKVRSGVRSVMI 103 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhH--HhhCCHHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHcCCCEEEe
Confidence 45666677777777777665443322 22234577888888887764 455533 334434789999999999999865
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeC-CC----C----HHHHHHHHHHHHhCCCCEEe
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGL-GE----S----DDDLKEAMADLRSIDVDILT 281 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGl-gE----t----~e~~~~~l~~l~~lg~d~i~ 281 (351)
.--.++ + ..+.+...+.++.++. .|+.|.+- -|-|- +. . .-+..+..+|+++.|+|.+.
T Consensus 104 DgS~l~-~-------eeNi~~T~~vv~~Ah~--~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LA 173 (284)
T PRK09195 104 DGSHLP-F-------AQNISLVKEVVDFCHR--FDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLA 173 (284)
T ss_pred CCCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEe
Confidence 321111 1 1133344577788888 88876553 34333 11 0 12456788899999999877
Q ss_pred e
Q 018731 282 L 282 (351)
Q Consensus 282 i 282 (351)
+
T Consensus 174 v 174 (284)
T PRK09195 174 V 174 (284)
T ss_pred e
Confidence 6
No 241
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.64 E-value=7.5 Score=38.12 Aligned_cols=134 Identities=18% Similarity=0.214 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
+-.+.++.+.+.|++-|++-..++. ...+.++++.+++.+|++.+-+ .+. .+.+....+.++|+|.|.+++
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~g~------~~~~~~~v~~ik~~~p~~~vi~--g~V-~T~e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAHGH------STRIIELVKKIKTKYPNLDLIA--GNI-VTKEAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCC------ChhHHHHHHHHHhhCCCCcEEE--Eec-CCHHHHHHHHHcCCCEEEECC
Confidence 3457788888999999998554432 2578899999999988866532 222 478999999999999998776
Q ss_pred hchHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 215 ETVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 215 es~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
....- ..+.+.+-+ ..+......-+.+++ .++.+-++ |=-.+.+|+.+.+ .+|.+.+.++..+
T Consensus 224 g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~--~~vpVIAd---GGI~~~~Di~KAL----alGA~aVmvGs~~ 288 (404)
T PRK06843 224 GPGSICTTRIVAGVGVPQITAICDVYEVCKN--TNICIIAD---GGIRFSGDVVKAI----AAGADSVMIGNLF 288 (404)
T ss_pred CCCcCCcceeecCCCCChHHHHHHHHHHHhh--cCCeEEEe---CCCCCHHHHHHHH----HcCCCEEEEccee
Confidence 44321 112221111 133333333333444 46553222 2125677776665 4899998887554
No 242
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=91.64 E-value=8.6 Score=35.89 Aligned_cols=133 Identities=11% Similarity=0.030 Sum_probs=77.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC---CCcEEEEeecCCCCCHHHHHHHHHc--
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK---PDIMVECLTSDFRGDLRAVETLVHS-- 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~---p~i~i~~~~~~~~~~~e~l~~L~~a-- 205 (351)
.+.++-+++++.+.+.|+++|-++ . |.+. +.-.+.++.+.+.. ++..+.++.+. ..+.++...++
T Consensus 20 ~s~~~Ki~ia~~L~~~Gv~~IE~g--f-P~~~----~~e~e~~~~i~~~~~~~~~~~~~al~r~---~~~die~a~~~~~ 89 (284)
T cd07942 20 MSVEQKLRFFKLLVKIGFKEIEVG--F-PSAS----QTDFDFVRELIEEDLIPDDVTIQVLTQA---REDLIERTFEALR 89 (284)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe--C-CCCC----HHHHHHHHHHHHccCCCCCCEEEEEcCC---ChhhHHHHHHHhC
Confidence 567888899999999999999874 3 3344 23346677774431 35566666553 23336667766
Q ss_pred CCC--eeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeC-C----CC-HHHHHHHHHHHHh
Q 018731 206 GLD--VFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGL-G----ES-DDDLKEAMADLRS 274 (351)
Q Consensus 206 G~~--~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGl-g----Et-~e~~~~~l~~l~~ 274 (351)
|++ .+.+.+-+.+.. .+.++ .+....+...+.++.+++ .|+. +++.+-+-+ + .+ .+.+.+.++.+.+
T Consensus 90 ~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~--~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~ 167 (284)
T cd07942 90 GAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKE--LAAKYPETDWRFEYSPESFSDTELDFALEVCEAVID 167 (284)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--hcccccCceEEEEECCccCCCCCHHHHHHHHHHHHH
Confidence 665 566655444443 22232 112234445556777777 7765 233333333 4 34 4666777777766
Q ss_pred C
Q 018731 275 I 275 (351)
Q Consensus 275 l 275 (351)
.
T Consensus 168 ~ 168 (284)
T cd07942 168 V 168 (284)
T ss_pred h
Confidence 6
No 243
>PRK15452 putative protease; Provisional
Probab=91.47 E-value=1.6 Score=43.39 Aligned_cols=90 Identities=13% Similarity=0.028 Sum_probs=64.6
Q ss_pred EEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeCCCCHH
Q 018731 186 ECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGLGESDD 263 (351)
Q Consensus 186 ~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGlgEt~e 263 (351)
+.+.|.+ +.+.++...++|.|.|++|.+.+....+ . ...+.++..++++.+++ .|.++... .++. .+..+
T Consensus 5 eLlapag--~~e~l~aAi~~GADaVY~G~~~~~~R~~-~--~~f~~edl~eav~~ah~--~g~kvyvt~n~i~~-e~el~ 76 (443)
T PRK15452 5 ELLSPAG--TLKNMRYAFAYGADAVYAGQPRYSLRVR-N--NEFNHENLALGINEAHA--LGKKFYVVVNIAPH-NAKLK 76 (443)
T ss_pred EEEEECC--CHHHHHHHHHCCCCEEEECCCccchhhh-c--cCCCHHHHHHHHHHHHH--cCCEEEEEecCcCC-HHHHH
Confidence 3444433 7899999999999999999877543211 1 24688999999999999 88875443 3331 44456
Q ss_pred HHHHHHHHHHhCCCCEEeee
Q 018731 264 DLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 264 ~~~~~l~~l~~lg~d~i~i~ 283 (351)
.+.+.++.+.++|+|-+-+.
T Consensus 77 ~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 77 TFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred HHHHHHHHHHhCCCCEEEEc
Confidence 67777888889999977664
No 244
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=91.45 E-value=11 Score=34.34 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=53.9
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+...|++++++.+-+...-. ...-.++++.+++.. ++.+. ..++..+.+.++.+.++|++.+.+
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~---~~~~~~~i~~i~~~~-~ipv~--~~GGi~s~~~~~~~l~~Ga~~Vii 102 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFLDITASSEG---RDTMLDVVERVAEQV-FIPLT--VGGGIRSVEDARRLLRAGADKVSI 102 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccccc---CcchHHHHHHHHHhC-CCCEE--eeCCCCCHHHHHHHHHcCCCEEEE
Confidence 346677788888899999999876642111 135567787887753 44443 356667889999999999999987
Q ss_pred ch
Q 018731 213 NI 214 (351)
Q Consensus 213 ~i 214 (351)
+-
T Consensus 103 gt 104 (253)
T PRK02083 103 NS 104 (253)
T ss_pred Ch
Confidence 63
No 245
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=91.37 E-value=2.6 Score=39.15 Aligned_cols=114 Identities=15% Similarity=0.088 Sum_probs=66.7
Q ss_pred CcHHHHHHHHHHHHHhCCCcEEEEeecCC--CCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHH
Q 018731 164 GGSGHFARTVKAMKKQKPDIMVECLTSDF--RGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHA 241 (351)
Q Consensus 164 ~~~~~~~~li~~ik~~~p~i~i~~~~~~~--~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~ 241 (351)
.+.+.+.+.++..++..++..+-+..... ..-.+.++.+.++|+|.|-+|+-+.+... .++-..+.+...+.++.+
T Consensus 80 ~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~--~~~~~~~~~~~~eiv~~v 157 (289)
T cd02810 80 LGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG--GRQLGQDPEAVANLLKAV 157 (289)
T ss_pred cCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC--CcccccCHHHHHHHHHHH
Confidence 34567766666555432343333211111 00135677888889999887764432211 000123566677777777
Q ss_pred HHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHHhCCCCEEeeec
Q 018731 242 KLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 242 ~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
++.. ++. +++.+ +.+.+++.+.++.+.+.|+|.+.+..
T Consensus 158 r~~~-~~p----v~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 158 KAAV-DIP----LLVKLSPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHcc-CCC----EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 7621 333 33333 56788999999999999999988753
No 246
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=91.36 E-value=5.6 Score=36.98 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.++=-+.+- ..-+.+++.+.++.+.+...| ...+++|. ..+.++..+..+.+.+.
T Consensus 23 ~~i~~l~~~Gv~Gi~~~GstGE~-------~~Ls~~Er~~~~~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~a~~~ 92 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVGTTGES-------PTLSHEEHKKVIEFVVDLVNG---RVPVIAGTGSNATEEAISLTKFAEDV 92 (285)
T ss_pred HHHHHHHHcCCCEEEECccCccc-------ccCCHHHHHHHHHHHHHHhCC---CCeEEEeCCCccHHHHHHHHHHHHHc
Confidence 55666677788887653222211 123666666776666653233 23466777 45677777888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 93 Gad~v~v 99 (285)
T TIGR00674 93 GADGFLV 99 (285)
T ss_pred CCCEEEE
Confidence 8887666
No 247
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.08 E-value=3.4 Score=39.26 Aligned_cols=130 Identities=21% Similarity=0.198 Sum_probs=83.0
Q ss_pred HHHHHHh--CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhc
Q 018731 139 TAKAIAS--WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET 216 (351)
Q Consensus 139 ~~~~~~~--~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies 216 (351)
.++++.+ .|++.|++-..+. ..+.+.+.++.||+.+|++.|-+ .+ ..+.+.++.|.++|.|.+-+|+=.
T Consensus 112 r~~~L~~~~~g~D~iviD~AhG------hs~~~i~~ik~ik~~~P~~~vIa--GN-V~T~e~a~~Li~aGAD~vKVGIGp 182 (346)
T PRK05096 112 KTKQILALSPALNFICIDVANG------YSEHFVQFVAKAREAWPDKTICA--GN-VVTGEMVEELILSGADIVKVGIGP 182 (346)
T ss_pred HHHHHHhcCCCCCEEEEECCCC------cHHHHHHHHHHHHHhCCCCcEEE--ec-ccCHHHHHHHHHcCCCEEEEcccC
Confidence 3445554 5899999854443 24789999999999999876543 22 248899999999999998776644
Q ss_pred hHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 217 VKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 217 ~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
..- ..+.+.+-+ ....-+.+.-+.+++ .|..+-+|-=+ .+.-|+.+.+ ..|.|.+.++.+|
T Consensus 183 GSiCtTr~vtGvG~PQltAV~~~a~~a~~--~gvpiIADGGi---~~sGDI~KAl----aaGAd~VMlGsll 245 (346)
T PRK05096 183 GSVCTTRVKTGVGYPQLSAVIECADAAHG--LGGQIVSDGGC---TVPGDVAKAF----GGGADFVMLGGML 245 (346)
T ss_pred CccccCccccccChhHHHHHHHHHHHHHH--cCCCEEecCCc---ccccHHHHHH----HcCCCEEEeChhh
Confidence 332 122222111 134455666666777 77765554211 2334555443 4899999987666
No 248
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=91.07 E-value=13 Score=34.66 Aligned_cols=137 Identities=11% Similarity=0.077 Sum_probs=84.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++.+.+.+..-|.-.+... +...+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.+..-.++|+++|-
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~s~~~--~~~~~~~~~~~~~~~~a~~~-~VPVal-HLDHg~~~e~i~~ai~~GFtSVM 102 (286)
T PRK12738 27 NAETIQAILEVCSEMRSPVILAGTPGT--FKHIALEEIYALCSAYSTTY-NMPLAL-HLDHHESLDDIRRKVHAGVRSAM 102 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcch--hhhCCHHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHcCCCeEe
Confidence 356666777777777777555443322 22234677888888887764 455543 33433478899999999999886
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeC-CC----C----HHHHHHHHHHHHhCCCCEE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGL-GE----S----DDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGl-gE----t----~e~~~~~l~~l~~lg~d~i 280 (351)
+.--.++ + ..+.+...+.++.++. .|+.|.+- -|-|- +. . .-+-.+..+|+++.|+|.+
T Consensus 103 ~DgS~lp-~-------eeNi~~T~evv~~Ah~--~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~L 172 (286)
T PRK12738 103 IDGSHFP-F-------AENVKLVKSVVDFCHS--QDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSL 172 (286)
T ss_pred ecCCCCC-H-------HHHHHHHHHHHHHHHH--cCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEE
Confidence 5311111 1 1133344577778888 78876554 34333 11 1 1155778889999999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 173 Av 174 (286)
T PRK12738 173 AV 174 (286)
T ss_pred Ee
Confidence 76
No 249
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=91.00 E-value=6.5 Score=36.64 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.++--+. +. ..-+.+++.+.++.+.+...| ...+++|. +.+.++..+.++.++++
T Consensus 26 ~~i~~l~~~Gv~gi~~~Gs~G-E~------~~ls~~Er~~~~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~~ 95 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVGTTG-ES------PTLTHEEHEELIRAVVEAVNG---RVPVIAGTGSNSTAEAIELTKFAEKA 95 (292)
T ss_pred HHHHHHHHcCCCEEEECCcCC-cc------ccCCHHHHHHHHHHHHHHhCC---CCcEEeecCCchHHHHHHHHHHHHHc
Confidence 456666667777776432221 11 123566666666666553222 23456777 45667777777777777
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 96 G~d~v~~ 102 (292)
T PRK03170 96 GADGALV 102 (292)
T ss_pred CCCEEEE
Confidence 7776665
No 250
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=90.79 E-value=5.6 Score=38.21 Aligned_cols=133 Identities=23% Similarity=0.257 Sum_probs=86.6
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchh
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ie 215 (351)
-.+.++.+.+.|++.|++-+.+. . .++..+.++.||+.+|++.|-+- + ..+.+.++.|.++|.|.|-+|+=
T Consensus 109 ~~er~~~L~~agvD~ivID~a~g--~----s~~~~~~ik~ik~~~~~~~viaG--N-V~T~e~a~~L~~aGad~vkVGiG 179 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVIDSAHG--H----SEHVIDMIKKIKKKFPDVPVIAG--N-VVTYEGAKDLIDAGADAVKVGIG 179 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SST--T----SHHHHHHHHHHHHHSTTSEEEEE--E-E-SHHHHHHHHHTT-SEEEESSS
T ss_pred HHHHHHHHHHcCCCEEEccccCc--c----HHHHHHHHHHHHHhCCCceEEec--c-cCCHHHHHHHHHcCCCEEEEecc
Confidence 35566777888999999865543 1 37899999999999998776441 1 23889999999999999988765
Q ss_pred chHH-HHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 216 TVKR-LQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 216 s~~~-~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
...- ..+.+.+- ....--+.+..+.+++ .|+.+-+|-=+ .+.-|+.+.+ ..|.|.+.++.+|
T Consensus 180 pGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~--~~v~iIADGGi---~~sGDi~KAl----a~GAd~VMlG~ll 243 (352)
T PF00478_consen 180 PGSICTTREVTGVGVPQLTAVYECAEAARD--YGVPIIADGGI---RTSGDIVKAL----AAGADAVMLGSLL 243 (352)
T ss_dssp SSTTBHHHHHHSBSCTHHHHHHHHHHHHHC--TTSEEEEESS----SSHHHHHHHH----HTT-SEEEESTTT
T ss_pred CCcccccccccccCCcHHHHHHHHHHHhhh--ccCceeecCCc---Ccccceeeee----eecccceeechhh
Confidence 4332 22222211 1244556677777777 78776555311 3555665554 5899999998666
No 251
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.74 E-value=1.8 Score=40.18 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+++..+.+.|++.|.+. .++ .+.+.+.++.++...|++.+++ .++. +++.+..+++.|+|.|+.|-
T Consensus 192 leea~~A~~~GaDiI~LD-----n~~---~e~l~~~v~~~~~~~~~~~ieA--sGgI-t~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 192 LEEAKNAMNAGADIVMCD-----NMS---VEEIKEVVAYRNANYPHVLLEA--SGNI-TLENINAYAKSGVDAISSGS 258 (273)
T ss_pred HHHHHHHHHcCCCEEEEC-----CCC---HHHHHHHHHHhhccCCCeEEEE--ECCC-CHHHHHHHHHcCCCEEEeCh
Confidence 456666678899977762 222 4788888887766566666665 4454 99999999999999998764
No 252
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.71 E-value=1.9 Score=40.26 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+++.++.+.|++.|.| |.++ .+.+.+.++.+++..|.+.+++ .++ .+.+.+..+++.|+|.|+.|.
T Consensus 209 l~ea~eal~~gaDiI~L-----Dnm~---~e~vk~av~~~~~~~~~v~iea--SGG-I~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 209 LEQLDEVLAEGAELVLL-----DNFP---VWQTQEAVQRRDARAPTVLLES--SGG-LTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred HHHHHHHHHcCCCEEEe-----CCCC---HHHHHHHHHHHhccCCCEEEEE--ECC-CCHHHHHHHHhcCCCEEEeCh
Confidence 34566667789988887 3344 4788888888777767777765 444 499999999999999998764
No 253
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=90.70 E-value=14 Score=34.40 Aligned_cols=137 Identities=11% Similarity=0.118 Sum_probs=85.0
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
..+.+...++++.+.+..-|.-.+... +...+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.+..-.++|+++|-
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~--~~~~g~~~~~~~~~~~a~~~-~VPVal-HLDH~~~~e~i~~ai~~GftSVM 102 (284)
T PRK12737 27 NLETLQVVVETAAELRSPVILAGTPGT--FSYAGTDYIVAIAEVAARKY-NIPLAL-HLDHHEDLDDIKKKVRAGIRSVM 102 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCccH--HhhCCHHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHcCCCeEE
Confidence 356667777777777777665444322 22123567888888777654 455533 33433478999999999999886
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eeeeeC-CC----C----HHHHHHHHHHHHhCCCCEE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SIMLGL-GE----S----DDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~IvGl-gE----t----~e~~~~~l~~l~~lg~d~i 280 (351)
+.--.++ + ..+.+...+.++.++. .|+.|.+ +-|-|- ++ + .-+-.+..+|+++.|+|.+
T Consensus 103 iDgS~lp-~-------eeNi~~T~~vv~~Ah~--~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~L 172 (284)
T PRK12737 103 IDGSHLS-F-------EENIAIVKEVVEFCHR--YDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSL 172 (284)
T ss_pred ecCCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEE
Confidence 5311111 1 1234445577888888 7887655 444443 11 1 1145788899999999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 173 Av 174 (284)
T PRK12737 173 AV 174 (284)
T ss_pred ee
Confidence 76
No 254
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=90.66 E-value=6.7 Score=35.02 Aligned_cols=131 Identities=18% Similarity=0.224 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++.+.+.|++++++..-+. ...+ ...-.++++.+.+.. ++.+.+ .++..+.+.++.+.++|++.+-++
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~--~~~g-~~~~~~~i~~i~~~~-~~pi~~--ggGI~~~ed~~~~~~~Ga~~vvlg 101 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDG--AKEG-GPVNLPVIKKIVRET-GVPVQV--GGGIRSLEDVEKLLDLGVDRVIIG 101 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCc--cccC-CCCcHHHHHHHHHhc-CCCEEE--eCCcCCHHHHHHHHHcCCCEEEEC
Confidence 4677788888889999998854432 1111 122345666666653 344443 556678999999999999998776
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee------eeC-CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM------LGL-GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I------vGl-gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
....+ +.+...+..+.+.. .-+.++.++- -|. ..+..+..+.++.+.+.|++.+.+.
T Consensus 102 s~~l~-----------d~~~~~~~~~~~g~--~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~ 165 (230)
T TIGR00007 102 TAAVE-----------NPDLVKELLKEYGP--ERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYT 165 (230)
T ss_pred hHHhh-----------CHHHHHHHHHHhCC--CcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEE
Confidence 43332 12223333333221 1133333432 222 1223455677888889999987763
No 255
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=90.64 E-value=7.3 Score=35.98 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHh
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS 274 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~ 274 (351)
.+.++.+.+.|++.+.++--|.+- ..-+.+++.+.++.+.+...| ...+++|. +.+.++..+..+.+.+
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstGE~-------~~ls~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEA-------PTLTDEERKEVIEAVVEAVAG---RVPVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCccc-------ccCCHHHHHHHHHHHHHHhCC---CCeEEEecCCccHHHHHHHHHHHHH
Confidence 356677777788887654222211 123667777777766653222 24467777 5677777788888888
Q ss_pred CCCCEEee
Q 018731 275 IDVDILTL 282 (351)
Q Consensus 275 lg~d~i~i 282 (351)
+|+|.+.+
T Consensus 91 ~Gad~v~v 98 (281)
T cd00408 91 AGADGVLV 98 (281)
T ss_pred cCCCEEEE
Confidence 88887666
No 256
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=90.58 E-value=11 Score=34.81 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=78.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc--CCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS--GLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a--G~~ 208 (351)
.+.+.+.+.+++..+.|+.-|-+.++.+ ...+.+++..+++.+++.. ++.+.+=| .+.+.++.-.++ |.+
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~---~~eE~~r~~~~v~~l~~~~-~~plsIDT----~~~~v~eaaL~~~~G~~ 93 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTA---VEEEPETMEWLVETVQEVV-DVPLCIDS----PNPAAIEAGLKVAKGPP 93 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC---chhHHHHHHHHHHHHHHhC-CCCEEEeC----CCHHHHHHHHHhCCCCC
Confidence 5667788888888899999998876643 2233577888888887653 44443212 155666666665 666
Q ss_pred eee-cchhc--hHHHH---hhh-----------cCCCCCHH----HHHHHHHHHHHhCCCC---eEEEeeeeeC-CCCHH
Q 018731 209 VFA-HNIET--VKRLQ---RIV-----------RDPRAGYE----QSLEVLKHAKLSKKGL---ITKSSIMLGL-GESDD 263 (351)
Q Consensus 209 ~i~-~~ies--~~~~~---~~~-----------r~~~~~~~----~~l~~i~~~~~~~~Gi---~v~~~~IvGl-gEt~e 263 (351)
.|+ ++.+. .+.+. +.. ++...+.+ ...+.++.+.+ .|+ .+-.|-.+|. |-+.+
T Consensus 94 iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~--~GI~~~~IilDPgi~~~~~~~~ 171 (261)
T PRK07535 94 LINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADE--YGIPPEDIYIDPLVLPLSAAQD 171 (261)
T ss_pred EEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHH--cCCCHhHEEEeCCCCcccCChH
Confidence 554 22221 12211 100 00011333 33445566777 899 4777877884 66655
Q ss_pred HH---HHHHHHHHhC
Q 018731 264 DL---KEAMADLRSI 275 (351)
Q Consensus 264 ~~---~~~l~~l~~l 275 (351)
+. .+.++.+++.
T Consensus 172 ~~~~~l~~i~~l~~~ 186 (261)
T PRK07535 172 AGPEVLETIRRIKEL 186 (261)
T ss_pred HHHHHHHHHHHHHHh
Confidence 55 4455555554
No 257
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=90.39 E-value=6.6 Score=34.82 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=75.4
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.++++.+..++.+.+.|++-|=+|--. +.-.+.|+.+++.+|+.-|.+ +..++.+.++.+.++|.+-+
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~s---------p~a~e~I~~l~~~~p~~lIGA---GTVL~~~q~~~a~~aGa~fi 89 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRT---------PAALEAIRALAKEFPEALIGA---GTVLNPEQARQAIAAGAQFI 89 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCC---------CCHHHHHHHHHHhCcccEEcc---ccccCHHHHHHHHHcCCCEE
Confidence 357888999999999999988775332 245788999999888665543 44579999999999999976
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+. |+.+. +.++.++. .|+.+ |-|. -|.-|+... .++|.+.+-+|
T Consensus 90 -------------Vs-P~~~~----ev~~~a~~--~~ip~----~PG~-~TptEi~~A----le~G~~~lK~F 133 (211)
T COG0800 90 -------------VS-PGLNP----EVAKAANR--YGIPY----IPGV-ATPTEIMAA----LELGASALKFF 133 (211)
T ss_pred -------------EC-CCCCH----HHHHHHHh--CCCcc----cCCC-CCHHHHHHH----HHcChhheeec
Confidence 22 33333 45556666 67653 3442 344454433 35666665553
No 258
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=90.33 E-value=4.1 Score=36.68 Aligned_cols=101 Identities=19% Similarity=0.310 Sum_probs=62.2
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcE--EEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM--VECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~--i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
++..+.++++.+...|++.+.+-=-+....++-. .=.+.++++++..|++. ++..+.+ ....++.+.++|.|.
T Consensus 17 d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~--~G~~~v~~lr~~~~~~~lDvHLm~~~---p~~~i~~~~~~Gad~ 91 (228)
T PTZ00170 17 DFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLS--FGPPVVKSLRKHLPNTFLDCHLMVSN---PEKWVDDFAKAGASQ 91 (228)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCCcC--cCHHHHHHHHhcCCCCCEEEEECCCC---HHHHHHHHHHcCCCE
Confidence 4456778888888999998876322222123211 11467778887765643 3443221 356789999999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS 252 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~ 252 (351)
+++..|+... + ..++++.+++ .|..+..
T Consensus 92 itvH~ea~~~----------~---~~~~l~~ik~--~G~~~gv 119 (228)
T PTZ00170 92 FTFHIEATED----------D---PKAVARKIRE--AGMKVGV 119 (228)
T ss_pred EEEeccCCch----------H---HHHHHHHHHH--CCCeEEE
Confidence 9887665321 1 2356667777 7876543
No 259
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=90.30 E-value=9.9 Score=35.57 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
+.++.+.+.|++.+.++=-|.+- ..-+.+++.+.++.+.+...| ...+|+|. ..+.++..+..+...++
T Consensus 25 ~lv~~~~~~Gv~gi~v~GstGE~-------~~Ls~~Er~~l~~~~~~~~~g---~~pvi~gv~~~~t~~ai~~a~~A~~~ 94 (294)
T TIGR02313 25 ELIEFQIEGGSHAISVGGTSGEP-------GSLTLEERKQAIENAIDQIAG---RIPFAPGTGALNHDETLELTKFAEEA 94 (294)
T ss_pred HHHHHHHHcCCCEEEECccCccc-------ccCCHHHHHHHHHHHHHHhCC---CCcEEEECCcchHHHHHHHHHHHHHc
Confidence 44555555566665432111111 123555555555554432222 23345555 35555566666666666
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 95 Gad~v~v 101 (294)
T TIGR02313 95 GADAAMV 101 (294)
T ss_pred CCCEEEE
Confidence 6665554
No 260
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=90.27 E-value=6.5 Score=36.39 Aligned_cols=127 Identities=11% Similarity=0.096 Sum_probs=75.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC----CCcHHHHHHHHHHHHHhCCCcEEEE-eecCCC---CC-HHH---
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP----DGGSGHFARTVKAMKKQKPDIMVEC-LTSDFR---GD-LRA--- 198 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~----~~~~~~~~~li~~ik~~~p~i~i~~-~~~~~~---~~-~e~--- 198 (351)
.+..++...+..+...|++.|...+|+++... ...+++-.++++.+++.++++.|.+ ..|.+. .+ ++.
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~ 149 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIEN 149 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHH
Confidence 45667888888888999999986666654211 1234567788888888766666653 234321 12 223
Q ss_pred HHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-C-CCHHHHHHHHHHHHhCC
Q 018731 199 VETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G-ESDDDLKEAMADLRSID 276 (351)
Q Consensus 199 l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-g-Et~e~~~~~l~~l~~lg 276 (351)
++.=.++|.+.+. . ..-++.+...+.++.+++ .|+. .-++.|+ + .+.. .+++++.-.|
T Consensus 150 L~~K~~aGA~f~i------T-------Q~~fd~~~~~~~~~~~~~--~gi~--~PIi~Gi~p~~s~k---~~~~~~~~~G 209 (272)
T TIGR00676 150 LKRKVDAGADYAI------T-------QLFFDNDDYYRFVDRCRA--AGID--VPIIPGIMPITNFK---QLLRFAERCG 209 (272)
T ss_pred HHHHHHcCCCeEe------e-------ccccCHHHHHHHHHHHHH--cCCC--CCEecccCCcCCHH---HHHHHHhccC
Confidence 3344467887541 1 134566777777778877 7764 3566666 3 3333 3444544344
Q ss_pred C
Q 018731 277 V 277 (351)
Q Consensus 277 ~ 277 (351)
+
T Consensus 210 v 210 (272)
T TIGR00676 210 A 210 (272)
T ss_pred C
Confidence 4
No 261
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=90.27 E-value=11 Score=38.08 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
+..+.++.+.+.|++.|.+...+.. .....+.++.|++.+|++.|-+ +...+.+.++.+.++|+|.|-+++
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~------s~~~~~~i~~ik~~~~~~~v~a---G~V~t~~~a~~~~~aGad~I~vg~ 311 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGN------SIYQIDMIKKLKSNYPHVDIIA---GNVVTADQAKNLIDAGADGLRIGM 311 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCC------chHHHHHHHHHHhhCCCceEEE---CCcCCHHHHHHHHHcCCCEEEECC
Confidence 3367788888999999998654431 1345789999999888766644 223588999999999999997654
Q ss_pred hchH-HHHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeee--eCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 215 ETVK-RLQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIML--GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 215 es~~-~~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv--GlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
-... ...+...+-+ .....+.+..+.+++ .|+. +|. | -.|..|+.+.+ .+|.+.+.++..+
T Consensus 312 g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~--~~v~----vIadGG-i~~~~di~kAl----a~GA~~Vm~G~~~ 376 (495)
T PTZ00314 312 GSGSICITQEVCAVGRPQASAVYHVARYARE--RGVP----CIADGG-IKNSGDICKAL----ALGADCVMLGSLL 376 (495)
T ss_pred cCCcccccchhccCCCChHHHHHHHHHHHhh--cCCe----EEecCC-CCCHHHHHHHH----HcCCCEEEECchh
Confidence 3221 1111111111 234444555566666 6765 344 3 25666766654 4899998887555
No 262
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.21 E-value=2.3 Score=39.71 Aligned_cols=67 Identities=19% Similarity=0.444 Sum_probs=50.3
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+++.++.+.|++.|.|. .+. .+.+.+.++.+++..+.+.+++ .++. +.+.+..+++.|+|.|+.+-
T Consensus 206 leea~eA~~~GaD~I~LD-----n~~---~e~l~~av~~~~~~~~~i~leA--sGGI-t~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 206 LEQVQEALEYGADIIMLD-----NMP---VDLMQQAVQLIRQQNPRVKIEA--SGNI-TLETIRAVAETGVDYISSSA 272 (288)
T ss_pred HHHHHHHHHcCCCEEEEC-----CCC---HHHHHHHHHHHHhcCCCeEEEE--ECCC-CHHHHHHHHHcCCCEEEEch
Confidence 455556668899988882 233 4788888888887666776665 4453 89999999999999998764
No 263
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=90.09 E-value=2.4 Score=37.96 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=58.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.-++.+.++.+.+.|+++++|...+.. . .+.+-..++++...+.. .+.++ ..++..+.+.++.+..+|.|.|+
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs--~-~gr~~~~~vv~r~A~~v-fiPlt--VGGGI~s~eD~~~ll~aGADKVS 101 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITAS--S-EGRETMLDVVERVAEQV-FIPLT--VGGGIRSVEDARKLLRAGADKVS 101 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEecccc--c-ccchhHHHHHHHHHhhc-eeeeE--ecCCcCCHHHHHHHHHcCCCeee
Confidence 3456788999999999999999766542 2 22367788888887752 34443 35677789999999999999999
Q ss_pred cchhc
Q 018731 212 HNIET 216 (351)
Q Consensus 212 ~~ies 216 (351)
+|-..
T Consensus 102 INsaA 106 (256)
T COG0107 102 INSAA 106 (256)
T ss_pred eChhH
Confidence 97544
No 264
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=89.95 E-value=2.4 Score=39.35 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++++++.+.|++.|.|- .++ .+.+.+.++.+++..+++.+++ .++ .+.+.+..+++.|+|.|+.|
T Consensus 198 leea~ea~~~GaDiI~lD-----n~~---~e~l~~~v~~l~~~~~~~~lea--sGG-I~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 198 IEQALTVLQASPDILQLD-----KFT---PQQLHHLHERLKFFDHIPTLAA--AGG-INPENIADYIEAGIDLFITS 263 (277)
T ss_pred HHHHHHHHHcCcCEEEEC-----CCC---HHHHHHHHHHHhccCCCEEEEE--ECC-CCHHHHHHHHhcCCCEEEeC
Confidence 456666778899988883 343 4788899988876667777665 445 49999999999999999875
No 265
>PRK06801 hypothetical protein; Provisional
Probab=89.87 E-value=17 Score=33.96 Aligned_cols=137 Identities=17% Similarity=0.081 Sum_probs=81.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++...+.+..-|.-.+... ....+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.++...++|++.|.
T Consensus 27 n~e~~~avi~AAe~~~~PvIl~~~~~~--~~~~~~~~~~~~~~~~a~~~-~vpV~l-HlDH~~~~e~i~~Ai~~GftSVm 102 (286)
T PRK06801 27 DSHFLRALFAAAKQERSPFIINIAEVH--FKYISLESLVEAVKFEAARH-DIPVVL-NLDHGLHFEAVVRALRLGFSSVM 102 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEeCcch--hhcCCHHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHhCCcEEE
Confidence 456667777777777777665443322 22234678888888887764 445433 33433477899999999999997
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE--EEeeeeeCCC----------CHHHHHHHHHHHHhCCCCE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT--KSSIMLGLGE----------SDDDLKEAMADLRSIDVDI 279 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v--~~~~IvGlgE----------t~e~~~~~l~~l~~lg~d~ 279 (351)
+.--..+ . ..+.+...+..+.++. .|+.| ..+.+-|-.+ ...+..+..+++++.|+|.
T Consensus 103 ~D~S~l~-~-------eeNi~~t~~v~~~a~~--~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~ 172 (286)
T PRK06801 103 FDGSTLE-Y-------EENVRQTREVVKMCHA--VGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDA 172 (286)
T ss_pred EcCCCCC-H-------HHHHHHHHHHHHHHHH--cCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCE
Confidence 6211110 0 1133344566667777 77765 3333322110 0123467778888999999
Q ss_pred Eee
Q 018731 280 LTL 282 (351)
Q Consensus 280 i~i 282 (351)
+.+
T Consensus 173 LAv 175 (286)
T PRK06801 173 LAV 175 (286)
T ss_pred EEe
Confidence 888
No 266
>PLN02540 methylenetetrahydrofolate reductase
Probab=89.77 E-value=8.4 Score=39.44 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=37.3
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC------CCcHHHHHHHHHHHHHhCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP------DGGSGHFARTVKAMKKQKP 181 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~------~~~~~~~~~li~~ik~~~p 181 (351)
++.+++.+.+..+.+.|++.|....|+++.-. .+++.+..+|++.|++.+.
T Consensus 70 ~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~g 126 (565)
T PLN02540 70 MPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYG 126 (565)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCC
Confidence 44567888888889999999987777764321 1345678899999998643
No 267
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=89.68 E-value=8 Score=36.01 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=66.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCC------CCCcHHHHHHHHHHHHHhCCC-cEEEEe-ecCCC---CCHH-HH
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDI------PDGGSGHFARTVKAMKKQKPD-IMVECL-TSDFR---GDLR-AV 199 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l------~~~~~~~~~~li~~ik~~~p~-i~i~~~-~~~~~---~~~e-~l 199 (351)
+..++.+.+..+.+.|++.|...+|+++.. ..+.++.-.++++.+++..+. +.|.+. .|.+. .+.+ .+
T Consensus 72 ~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~ 151 (281)
T TIGR00677 72 PIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDL 151 (281)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHH
Confidence 346778888888899999998777776322 123356678899999875433 544432 24321 1222 23
Q ss_pred HHHH---HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 200 ETLV---HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 200 ~~L~---~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
+.|+ ++|.+.+ ..+ .-++.+...+.++.+++ .|+. .-++.|+
T Consensus 152 ~~L~~Ki~aGA~f~------iTQ-------~~Fd~~~~~~f~~~~~~--~gi~--~PIi~GI 196 (281)
T TIGR00677 152 KYLKEKVDAGADFI------ITQ-------LFYDVDNFLKFVNDCRA--IGID--CPIVPGI 196 (281)
T ss_pred HHHHHHHHcCCCEe------ecc-------ceecHHHHHHHHHHHHH--cCCC--CCEEeec
Confidence 3333 5888855 112 24566666777777887 7764 3557777
No 268
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=89.51 E-value=5.9 Score=37.69 Aligned_cols=131 Identities=20% Similarity=0.183 Sum_probs=79.5
Q ss_pred HHHHHHHhC--CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchh
Q 018731 138 NTAKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (351)
Q Consensus 138 ~~~~~~~~~--G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ie 215 (351)
+.++.+.+. +++.|++-..+. ..+.+.+.++.||+.+|+..|-. +...+.+.++.|.++|+|.|-+++=
T Consensus 110 er~~~L~~a~~~~d~iviD~AhG------hs~~~i~~ik~ir~~~p~~~via---GNV~T~e~a~~Li~aGAD~ikVgiG 180 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVANG------YSEHFVEFVKLVREAFPEHTIMA---GNVVTGEMVEELILSGADIVKVGIG 180 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC------cHHHHHHHHHHHHhhCCCCeEEE---ecccCHHHHHHHHHcCCCEEEEccc
Confidence 344555555 588898854433 24789999999999998865533 2235899999999999999977643
Q ss_pred chHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 216 TVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 216 s~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
...- -.+.+.+-+ ....-..+..+.++. .++.+-++- |+ .+.-|+.+.+ .+|.+.+.++..+
T Consensus 181 pGSicttR~~~Gvg~pqltAv~~~a~aa~~--~~v~VIaDG--GI-r~~gDI~KAL----A~GAd~VMlG~ll 244 (343)
T TIGR01305 181 PGSVCTTRTKTGVGYPQLSAVIECADAAHG--LKGHIISDG--GC-TCPGDVAKAF----GAGADFVMLGGMF 244 (343)
T ss_pred CCCcccCceeCCCCcCHHHHHHHHHHHhcc--CCCeEEEcC--Cc-CchhHHHHHH----HcCCCEEEECHhh
Confidence 3322 112222112 244444555555554 565543332 22 3334555443 4899998887554
No 269
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=89.34 E-value=5.1 Score=32.83 Aligned_cols=67 Identities=13% Similarity=0.055 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC-cEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~-i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
+.++.+.+.+++-|.+++-..+ . .+.+.++++++++..++ +.+ .. ++....+..+.|+++|++.+.+
T Consensus 44 ~~v~aa~e~~adii~iSsl~~~-~----~~~~~~~~~~L~~~g~~~i~v--iv-GG~~~~~~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 44 EIARQAVEADVHVVGVSSLAGG-H----LTLVPALRKELDKLGRPDILV--VV-GGVIPPQDFDELKEMGVAEIFG 111 (132)
T ss_pred HHHHHHHHcCCCEEEEcCchhh-h----HHHHHHHHHHHHhcCCCCCEE--EE-eCCCChHhHHHHHHCCCCEEEC
Confidence 3455556779999999875532 2 36788899999887543 333 22 2323556678899999998753
No 270
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=89.28 E-value=11 Score=34.66 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=13.9
Q ss_pred EEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 151 IVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 151 I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
.+++.|.|+ .+...++++.+.+.
T Consensus 16 ~yi~aG~P~------~~~~~~~~~~l~~~ 38 (258)
T PRK13111 16 PYITAGDPD------LETSLEIIKALVEA 38 (258)
T ss_pred EEEeCCCCC------HHHHHHHHHHHHHC
Confidence 366777652 35666766666554
No 271
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=89.24 E-value=19 Score=33.59 Aligned_cols=137 Identities=10% Similarity=0.166 Sum_probs=79.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCC-CCCC----CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDR-DDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~-~~l~----~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+++++.+.++++.+.|+.-|-+.|... +... ..+++++..+++.+++.. ++.|.+ |. ...+.++...++
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~ISI---DT-~~~~va~~AL~~ 109 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISV---DT-SKPEVIRESAKA 109 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEE---EC-CCHHHHHHHHHc
Confidence 4678888999999999999888865331 1111 112345666778887643 444432 22 267778887788
Q ss_pred CCCeeec--chhchHHHHhhh------------cC-CC-----CC--------HHHHHHHHHHHHHhCCCC---eEEEee
Q 018731 206 GLDVFAH--NIETVKRLQRIV------------RD-PR-----AG--------YEQSLEVLKHAKLSKKGL---ITKSSI 254 (351)
Q Consensus 206 G~~~i~~--~ies~~~~~~~~------------r~-~~-----~~--------~~~~l~~i~~~~~~~~Gi---~v~~~~ 254 (351)
|.+.|+- ++.. +++.+.+ ++ |. .. .+...+.++.+.+ .|+ ++-.|-
T Consensus 110 GadiINDI~g~~d-~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~--~GI~~~~IilDP 186 (282)
T PRK11613 110 GAHIINDIRSLSE-PGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEA--AGIAKEKLLLDP 186 (282)
T ss_pred CCCEEEECCCCCC-HHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHH--cCCChhhEEEeC
Confidence 8887731 2211 1111100 00 00 01 1233455677777 899 466666
Q ss_pred eeeCCCCHHHHHHHHHHHHhC
Q 018731 255 MLGLGESDDDLKEAMADLRSI 275 (351)
Q Consensus 255 IvGlgEt~e~~~~~l~~l~~l 275 (351)
-+|||.|.++=.++++.+..+
T Consensus 187 GiGF~k~~~~n~~ll~~l~~l 207 (282)
T PRK11613 187 GFGFGKNLSHNYQLLARLAEF 207 (282)
T ss_pred CCCcCCCHHHHHHHHHHHHHH
Confidence 678888887766666665443
No 272
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=89.17 E-value=6.3 Score=36.37 Aligned_cols=117 Identities=14% Similarity=0.143 Sum_probs=69.4
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCC------CcHHHHHHHHHHHHHhC-CCcEEEE-eecCCC---CC-H---
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPD------GGSGHFARTVKAMKKQK-PDIMVEC-LTSDFR---GD-L--- 196 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~------~~~~~~~~li~~ik~~~-p~i~i~~-~~~~~~---~~-~--- 196 (351)
+..++...+..+.+.|++.|.+.+|+++...+ ....+-.++++.++... +++.+.+ ..|.+. .+ +
T Consensus 71 n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~~~ 150 (274)
T cd00537 71 NRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEEDI 150 (274)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHHHHH
Confidence 45778888888889999999988887653321 22345678888888753 2333321 112211 11 2
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-C-CCHHHH
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G-ESDDDL 265 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-g-Et~e~~ 265 (351)
+.++.=.++|.+.+. .+ ..++.+...+.++.+++ .|+. .-++.|+ + .+...+
T Consensus 151 ~~L~~Ki~aGA~f~i------TQ-------~~fd~~~~~~~~~~~~~--~gi~--vPIi~GI~p~~s~~~l 204 (274)
T cd00537 151 KRLKRKVDAGADFII------TQ-------LFFDNDAFLRFVDRCRA--AGIT--VPIIPGIMPLTSYKQA 204 (274)
T ss_pred HHHHHHHHCCCCEEe------ec-------ccccHHHHHHHHHHHHH--cCCC--CCEEeeccccCCHHHH
Confidence 334444466877651 11 34566777777788888 7863 4566776 3 344443
No 273
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=89.08 E-value=3 Score=38.89 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+++++++.+.|++.|.| +.++ .+.+.+.++.+++..+.+.+++ .++ .+.+.+..+++.|+|.|+.+
T Consensus 199 leqa~ea~~agaDiI~L-----Dn~~---~e~l~~av~~~~~~~~~~~lea--SGG-I~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 199 PKEAIAALRAQPDVLQL-----DKFS---PQQATEIAQIAPSLAPHCTLSL--AGG-INLNTLKNYADCGIRLFITS 264 (284)
T ss_pred HHHHHHHHHcCCCEEEE-----CCCC---HHHHHHHHHHhhccCCCeEEEE--ECC-CCHHHHHHHHhcCCCEEEEC
Confidence 56666777889998888 3344 4788888888776556666665 445 49999999999999999765
No 274
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.06 E-value=15 Score=33.12 Aligned_cols=129 Identities=11% Similarity=0.186 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++.+.+.|++++++..-+.. .. ...-.++++.+.+.... .+.+ .++..+.+.++.+.++|++++.+|
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a--~~--~~~n~~~i~~i~~~~~~-~v~v--GGGIrs~e~~~~~l~~Ga~kvvig 102 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAA--EG--VGNNEMYIKEISKIGFD-WIQV--GGGIRDIEKAKRLLSLDVNALVFS 102 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCc--CC--CcchHHHHHHHHhhCCC-CEEE--eCCcCCHHHHHHHHHCCCCEEEEC
Confidence 36788888888999999998665431 11 12233778777763211 3333 456668899999999999999887
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee-----ee--eCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI-----ML--GLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-----Iv--GlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
-++++. .+-..+..+..-. .-+-++.++ +. |-.++..++.+.++.+.++|+..+-+
T Consensus 103 t~a~~~-----------p~~~~~~~~~~g~--~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~ 165 (232)
T PRK13586 103 TIVFTN-----------FNLFHDIVREIGS--NRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIF 165 (232)
T ss_pred chhhCC-----------HHHHHHHHHHhCC--CCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEE
Confidence 655432 1111111222100 112233333 22 21234446778888888999876555
No 275
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=89.06 E-value=13 Score=34.63 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 230 ~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+.+++.+.++.+.+...| ...+|+|. ..+.++..+..+.+.+.|+|.+.+
T Consensus 55 s~eEr~~~~~~~~~~~~~---~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v 105 (293)
T PRK04147 55 STEEKKQVLEIVAEEAKG---KVKLIAQVGSVNTAEAQELAKYATELGYDAISA 105 (293)
T ss_pred CHHHHHHHHHHHHHHhCC---CCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 444444444444432222 12345555 234455555555555555555444
No 276
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=89.04 E-value=8.9 Score=33.56 Aligned_cols=122 Identities=19% Similarity=0.142 Sum_probs=70.5
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCH--HHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL--RAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~--e~l~~L~~aG~~~ 209 (351)
++++..+.++.+ +.|++.|-+ |.+ +. ...=.+.++.+++.+|+..+-+-+. ..+. ..++.+.++|.|.
T Consensus 10 ~~~~a~~~~~~l-~~~v~~iev--~~~--l~---~~~g~~~i~~l~~~~~~~~i~~d~k--~~d~~~~~~~~~~~~Gad~ 79 (206)
T TIGR03128 10 DIEEALELAEKV-ADYVDIIEI--GTP--LI---KNEGIEAVKEMKEAFPDRKVLADLK--TMDAGEYEAEQAFAAGADI 79 (206)
T ss_pred CHHHHHHHHHHc-ccCeeEEEe--CCH--HH---HHhCHHHHHHHHHHCCCCEEEEEEe--eccchHHHHHHHHHcCCCE
Confidence 457778888887 778876666 221 21 1222577888888766544332110 0122 3689999999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|.+..++.. ....+.++.+++ .|+.+...++ +..+..+++ ..+.++|+|.+.++
T Consensus 80 i~vh~~~~~-------------~~~~~~i~~~~~--~g~~~~~~~~-~~~t~~~~~----~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 80 VTVLGVADD-------------ATIKGAVKAAKK--HGKEVQVDLI-NVKDKVKRA----KELKELGADYIGVH 133 (206)
T ss_pred EEEeccCCH-------------HHHHHHHHHHHH--cCCEEEEEec-CCCChHHHH----HHHHHcCCCEEEEc
Confidence 976654321 123456667777 7887543221 112222333 44466799988773
No 277
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.98 E-value=3.4 Score=38.40 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC--CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~--p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+++.++.+.|++.|.| |.++ .+.+.+.++.+++.. |.+.+++ .++. +.+.++.+++.|+|.|+.|.
T Consensus 192 leea~~a~~agaDiI~L-----Dn~~---~e~l~~~v~~l~~~~~~~~~~lea--SGGI-~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 192 LEDALKAAKAGADIIML-----DNMT---PEEIREVIEALKREGLRERVKIEV--SGGI-TPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred HHHHHHHHHcCcCEEEE-----CCCC---HHHHHHHHHHHHhcCcCCCEEEEE--ECCC-CHHHHHHHHHcCCCEEEeCh
Confidence 45566667889987777 2333 478888888888754 4555555 4454 99999999999999998764
No 278
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=88.95 E-value=4.4 Score=35.94 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCC-CC---C-CCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCC
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDR-DD---I-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~-~~---l-~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~ 207 (351)
.++..+.+++..+.|+..|-+.++.. +. . ...+++++..+++.+++..+++.+.+=|. +++.++...++|.
T Consensus 18 ~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~----~~~v~~~aL~~g~ 93 (210)
T PF00809_consen 18 EDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTF----NPEVAEAALKAGA 93 (210)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES----SHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC----CHHHHHHHHHcCc
Confidence 45566778888899999999876541 11 1 11235678888888886334666654332 5677777666777
Q ss_pred Ceee
Q 018731 208 DVFA 211 (351)
Q Consensus 208 ~~i~ 211 (351)
+.|+
T Consensus 94 ~~in 97 (210)
T PF00809_consen 94 DIIN 97 (210)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 7653
No 279
>PRK12999 pyruvate carboxylase; Reviewed
Probab=88.86 E-value=35 Score=38.26 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=87.4
Q ss_pred CCchhHHHHHHHHHhC--CCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHhCCCcEEEEeecC-----CC-----CCH
Q 018731 131 PDPMEPENTAKAIASW--GVDYIVLTSVDRDDI--PDGGSGHFARTVKAMKKQKPDIMVECLTSD-----FR-----GDL 196 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~--G~~~I~ltgg~~~~l--~~~~~~~~~~li~~ik~~~p~i~i~~~~~~-----~~-----~~~ 196 (351)
++.++.+.+++.+.+. |+..|=+.||...+. .-.. +.=.+.++.+++..|++.+.++..+ +. ...
T Consensus 552 ~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~-e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~ 630 (1146)
T PRK12999 552 VRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLK-EDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVR 630 (1146)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccC-CCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHH
Confidence 4567888899999998 999998877653211 0000 1224567778877787766644321 00 124
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeee-e-----C--CCCHHHHHHH
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML-G-----L--GESDDDLKEA 268 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv-G-----l--gEt~e~~~~~ 268 (351)
+.++..+++|+|.+.+. ++. ...+.....++.+++ .|......+-+ | . -.|.+-+.+.
T Consensus 631 ~~i~~a~~~Gid~~rif-d~l-----------nd~~~~~~~i~~vk~--~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~ 696 (1146)
T PRK12999 631 AFVREAAAAGIDVFRIF-DSL-----------NWVENMRVAIDAVRE--TGKIAEAAICYTGDILDPARAKYDLDYYVDL 696 (1146)
T ss_pred HHHHHHHHcCCCEEEEe-ccC-----------ChHHHHHHHHHHHHH--cCCeEEEEEEEEecCCCCCCCCCCHHHHHHH
Confidence 56888999999988653 122 234445667778887 67532222211 1 1 1478888999
Q ss_pred HHHHHhCCCCEEee
Q 018731 269 MADLRSIDVDILTL 282 (351)
Q Consensus 269 l~~l~~lg~d~i~i 282 (351)
++.+.++|++.+.+
T Consensus 697 a~~l~~~Ga~~i~i 710 (1146)
T PRK12999 697 AKELEKAGAHILAI 710 (1146)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999998887
No 280
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=88.72 E-value=20 Score=33.35 Aligned_cols=137 Identities=13% Similarity=0.132 Sum_probs=84.6
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++.+.+.+..-|.-.+... +...+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.+..-.++|+++|-
T Consensus 25 n~e~~~avi~AAee~~sPvIlq~s~~~--~~~~~~~~~~~~~~~~a~~~-~VPVal-HLDHg~~~e~i~~ai~~GFtSVM 100 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVILAGTPGT--FKHAGTEYIVALCSAASTTY-NMPLAL-HLDHHESLDDIRQKVHAGVRSAM 100 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCccH--HhhCCHHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHcCCCEEe
Confidence 356667777777777777555433322 22123577888888887754 455543 33433478999999999999986
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeC-CC----C----HHHHHHHHHHHHhCCCCEE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGL-GE----S----DDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGl-gE----t----~e~~~~~l~~l~~lg~d~i 280 (351)
+.--.++ + ..+.+...++++.++. .|+.|.+- -|-|- ++ . .-+-.+..+|+++.|+|.+
T Consensus 101 ~DgS~lp-~-------eeNi~~T~~vv~~Ah~--~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 170 (282)
T TIGR01858 101 IDGSHFP-F-------AQNVKLVKEVVDFCHR--QDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSL 170 (282)
T ss_pred ecCCCCC-H-------HHHHHHHHHHHHHHHH--cCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEE
Confidence 5311111 1 1134445577788888 88876553 34333 11 1 1134778889999999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 171 Av 172 (282)
T TIGR01858 171 AV 172 (282)
T ss_pred ec
Confidence 76
No 281
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=88.67 E-value=2.3 Score=38.13 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+++.+.++.+.+.|++.|.+. + ..+++.+++.+|++.+.+.+.-...+.+.++.+.+.|++++.++
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~--~------------~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls 67 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVS--N------------PGLLELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLS 67 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEc--C------------HHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEEC
Confidence 567788888999999998882 2 23566778878888877655444458899999999999999887
Q ss_pred hhc
Q 018731 214 IET 216 (351)
Q Consensus 214 ies 216 (351)
.|-
T Consensus 68 ~EL 70 (233)
T PF01136_consen 68 PEL 70 (233)
T ss_pred ccC
Confidence 553
No 282
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=88.65 E-value=4.9 Score=36.17 Aligned_cols=132 Identities=21% Similarity=0.277 Sum_probs=80.7
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+.+.|++++++..-+. ... +...-.++++.+.+.. .+.+.+ .++..+.+.++.+.++|++++.+
T Consensus 28 ~~dP~~~a~~~~~~g~~~l~ivDLda--a~~-g~~~n~~~i~~i~~~~-~~~i~v--gGGIrs~ed~~~ll~~Ga~~Vvi 101 (229)
T PF00977_consen 28 SGDPVEVAKAFNEQGADELHIVDLDA--AKE-GRGSNLELIKEIAKET-GIPIQV--GGGIRSIEDAERLLDAGADRVVI 101 (229)
T ss_dssp CCCHHHHHHHHHHTT-SEEEEEEHHH--HCC-THHHHHHHHHHHHHHS-SSEEEE--ESSE-SHHHHHHHHHTT-SEEEE
T ss_pred CcCHHHHHHHHHHcCCCEEEEEEccC--ccc-CchhHHHHHHHHHhcC-CccEEE--eCccCcHHHHHHHHHhCCCEEEe
Confidence 45677888888899999999865432 111 2345568888888764 356654 45666899999999999999998
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeee-----CCC---CHHHHHHHHHHHHhCCCCEEeee
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG-----LGE---SDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG-----lgE---t~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+-+++.. + .-.+ +..+..-. --+-++.++--| -|- +.-+..+.++.+.++|+..+-+.
T Consensus 102 gt~~~~~-------~-~~l~---~~~~~~g~--~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~t 167 (229)
T PF00977_consen 102 GTEALED-------P-ELLE---ELAERYGS--QRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILT 167 (229)
T ss_dssp SHHHHHC-------C-HHHH---HHHHHHGG--GGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEE
T ss_pred ChHHhhc-------h-hHHH---HHHHHcCc--ccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEe
Confidence 8666532 1 0111 12222211 134444554444 122 23567888899999999887663
No 283
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=88.64 E-value=14 Score=33.93 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=50.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC---------------cHHHHHHHHHHHHHhCCCcEEEEe---ecCCC
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG---------------GSGHFARTVKAMKKQKPDIMVECL---TSDFR 193 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~---------------~~~~~~~li~~ik~~~p~i~i~~~---~~~~~ 193 (351)
+.+.-.+.++.+.+.|++-|-|.---.+.+.|+ ..+.+.++++.+++..+++.+..+ .|-+.
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~ 101 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFR 101 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhh
Confidence 456667778888889999887732111222222 135778888888865334432222 22111
Q ss_pred -CCHHHHHHHHHcCCCeeecch
Q 018731 194 -GDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 194 -~~~e~l~~L~~aG~~~i~~~i 214 (351)
..++.++.++++|++.+.+--
T Consensus 102 ~G~e~f~~~~~~aGvdgviipD 123 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVAD 123 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECC
Confidence 126789999999999987643
No 284
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=88.41 E-value=30 Score=35.43 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=57.6
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCH-----------HHH
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL-----------RAV 199 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~-----------e~l 199 (351)
.+..++.+.++.+.+.|+++++|..-+...-...+.+...++++.+.+.. .+.+++ .+++.+. |.+
T Consensus 264 ~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-~ip~~v--GGGIr~~~d~~~~~~~~~e~~ 340 (538)
T PLN02617 264 RNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-FVPLTV--GGGIRDFTDANGRYYSSLEVA 340 (538)
T ss_pred CcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-CCCEEE--cCCccccccccccccchHHHH
Confidence 44567888999999999999988655431001111245788888888752 445543 3444343 789
Q ss_pred HHHHHcCCCeeecchhchH
Q 018731 200 ETLVHSGLDVFAHNIETVK 218 (351)
Q Consensus 200 ~~L~~aG~~~i~~~ies~~ 218 (351)
+.+.++|+|.|.+|-..+.
T Consensus 341 ~~~l~~GadkV~i~s~Av~ 359 (538)
T PLN02617 341 SEYFRSGADKISIGSDAVY 359 (538)
T ss_pred HHHHHcCCCEEEEChHHHh
Confidence 9999999999999865543
No 285
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=88.26 E-value=15 Score=37.10 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee-c
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA-H 212 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~-~ 212 (351)
+++.+.++.+.+.|++-|-+.++.. -+ +.+.+..+++.+++.. ++.|.+ |. .+.+.++.-.++|.+.|+ +
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st--~p--~~~~v~~~V~~l~~~~-~~pISI---DT-~~~~v~eaAL~aGAdiINsV 235 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF--DD--DPDVVKEKVKTALDAL-DSPVIA---DT-PTLDELYEALKAGASGVIMP 235 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC--CC--cHHHHHHHHHHHHhhC-CCcEEE---eC-CCHHHHHHHHHcCCCEEEEC
Confidence 7788888888999999998876543 12 2467888999988753 444433 22 277888888889999876 2
Q ss_pred chhchHHHHhhhc-----------CCCCCHHHHHHHHHHHHHhCCCC-eEEEeeeeeCCCCHHHHHHHHHHHH
Q 018731 213 NIETVKRLQRIVR-----------DPRAGYEQSLEVLKHAKLSKKGL-ITKSSIMLGLGESDDDLKEAMADLR 273 (351)
Q Consensus 213 ~ies~~~~~~~~r-----------~~~~~~~~~l~~i~~~~~~~~Gi-~v~~~~IvGlgEt~e~~~~~l~~l~ 273 (351)
+-+..+++.+... .....++...+.++.+.+ .|+ .+-.|=++|+ ....+.+.+..++
T Consensus 236 s~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~--~Gi~~IIlDPglg~--~~~~l~~sL~~l~ 304 (499)
T TIGR00284 236 DVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRT--SGYSKVAADPSLSP--PLLGLLESIIRFR 304 (499)
T ss_pred CccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHH--CCCCcEEEeCCCCc--chHHHHHHHHHHH
Confidence 2222333321111 012346777788888988 999 4666666665 2334666666665
No 286
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=88.22 E-value=9.6 Score=35.82 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID 276 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg 276 (351)
..++.+.+.|++.|.++=-|. +. ..-+.+++.+.++.+.+.-.| ...+|+|.|.+.++..+.++.+.++|
T Consensus 32 ~li~~l~~~Gv~Gi~~~GstG-E~------~~Lt~eEr~~~~~~~~~~~~~---~~pvi~gv~~~t~~~i~~~~~a~~~G 101 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAGGTG-EF------FSLTPDEYSQVVRAAVETTAG---RVPVIAGAGGGTAQAIEYAQAAERAG 101 (303)
T ss_pred HHHHHHHHcCCCEEEECcCCc-Cc------ccCCHHHHHHHHHHHHHHhCC---CCcEEEecCCCHHHHHHHHHHHHHhC
Confidence 566667777888775532121 11 123566666666666542222 23456666447777777888888888
Q ss_pred CCEEee
Q 018731 277 VDILTL 282 (351)
Q Consensus 277 ~d~i~i 282 (351)
+|.+.+
T Consensus 102 adav~~ 107 (303)
T PRK03620 102 ADGILL 107 (303)
T ss_pred CCEEEE
Confidence 887655
No 287
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=88.20 E-value=15 Score=36.27 Aligned_cols=134 Identities=12% Similarity=0.134 Sum_probs=77.3
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhch
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV 217 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~ 217 (351)
+.++.+.+.|++.|.|-- .+++ .+.+.++++.+++......+.++.++ .++...+.|.+.|.++.+.+
T Consensus 221 ~~ve~aL~aGv~~VQLRe---K~ls---~~el~~la~~l~~l~~~~gv~LiIND------~~dlAl~~gAdGVHLGQeDL 288 (437)
T PRK12290 221 EWIERLLPLGINTVQLRI---KDPQ---QADLEQQIIRAIALGREYNAQVFIND------YWQLAIKHQAYGVHLGQEDL 288 (437)
T ss_pred HHHHHHHhCCCCEEEEeC---CCCC---HHHHHHHHHHHHHHHHHhCCEEEEEC------HHHHHHHcCCCEEEcChHHc
Confidence 357777889999888842 1233 35566666666543211222333332 46667788999998886543
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCccccc
Q 018731 218 KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVK 296 (351)
Q Consensus 218 ~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~ 296 (351)
... ..+.+.. + +.++|+ -.+.+++.+ +.+.|+|++.+++++ ||.-..+..
T Consensus 289 ~~~----------------~aR~ilg--~------~~iIGvStHs~eEl~~----A~~~gaDYI~lGPIF-pT~TK~~~~ 339 (437)
T PRK12290 289 EEA----------------NLAQLTD--A------GIRLGLSTHGYYELLR----IVQIQPSYIALGHIF-PTTTKQMPS 339 (437)
T ss_pred chh----------------hhhhhcC--C------CCEEEEecCCHHHHHH----HhhcCCCEEEECCcc-CCCCCCCCC
Confidence 221 0111111 2 346888 788887643 346899999998665 765432223
Q ss_pred CCCCHHHHHHHHHHHH
Q 018731 297 EYVTPEKFDFWKAYGE 312 (351)
Q Consensus 297 ~~v~~~e~~~~~~~~~ 312 (351)
.....+.+.++++...
T Consensus 340 ~p~Gl~~L~~~~~l~~ 355 (437)
T PRK12290 340 KPQGLVRLALYQKLID 355 (437)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 4455566666665543
No 288
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=88.06 E-value=16 Score=32.43 Aligned_cols=122 Identities=20% Similarity=0.138 Sum_probs=78.1
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEE--eecCCCCCHHHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVEC--LTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~--~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
+.++..+.++++.+. ..++--|+| .+. .+=.+.++.+++.+|+-.|-+ =|.|. ..=..+...++|-|.
T Consensus 14 ~l~~Ai~~a~~v~~~---~diiEvGTp-Lik----~eG~~aV~~lr~~~pd~~IvAD~Kt~D~--G~~e~~ma~~aGAd~ 83 (217)
T COG0269 14 DLEEAIEIAEEVADY---VDIIEVGTP-LIK----AEGMRAVRALRELFPDKIIVADLKTADA--GAIEARMAFEAGADW 83 (217)
T ss_pred CHHHHHHHHHHhhhc---ceEEEeCcH-HHH----HhhHHHHHHHHHHCCCCeEEeeeeecch--hHHHHHHHHHcCCCE
Confidence 345556666665543 334444765 233 222488999999999854432 11221 234668889999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+.+.- -.+.....++++.+++ .|..+..++|- .. ++.+-.++++++|++.+.+.
T Consensus 84 ~tV~g-------------~A~~~TI~~~i~~A~~--~~~~v~iDl~~--~~---~~~~~~~~l~~~gvd~~~~H 137 (217)
T COG0269 84 VTVLG-------------AADDATIKKAIKVAKE--YGKEVQIDLIG--VW---DPEQRAKWLKELGVDQVILH 137 (217)
T ss_pred EEEEe-------------cCCHHHHHHHHHHHHH--cCCeEEEEeec--CC---CHHHHHHHHHHhCCCEEEEE
Confidence 87531 2355566778888999 88888777663 23 45556677788999988774
No 289
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=88.02 E-value=3.9 Score=36.74 Aligned_cols=82 Identities=23% Similarity=0.253 Sum_probs=53.4
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++++.+.++.+.+.|+..|.|..-..-.. ...+.++++.+++..|++.+.+- +++.-+--...-.-.++|+++
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~----P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~ 209 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLADTVGIMT----PEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADR 209 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEEETTS-S-----HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SE
T ss_pred ccHHHHHHHHHHHHHcCCeEEEeeCccCCcC----HHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCE
Confidence 4578888999999999999999854332222 47899999999999886665542 333322333444456799999
Q ss_pred eecchhc
Q 018731 210 FAHNIET 216 (351)
Q Consensus 210 i~~~ies 216 (351)
|-.++-.
T Consensus 210 id~t~~G 216 (237)
T PF00682_consen 210 IDGTLGG 216 (237)
T ss_dssp EEEBGGG
T ss_pred EEccCcc
Confidence 8655443
No 290
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=88.01 E-value=24 Score=33.39 Aligned_cols=140 Identities=19% Similarity=0.168 Sum_probs=88.4
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.+.++..+.++.+.+.|++.+-++... .. +...+..+.+........+..+.+. ....++...++|++.+
T Consensus 17 ~~~~~ki~i~~~l~~~Gv~~iE~g~p~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~ 86 (344)
T TIGR02146 17 FSTEQKIEIAKALDEFGIDYIEVTHPA---AS----KQSRIDIEIIASLGLKANIVTHIRC---RLDDAKVAVELGVDGI 86 (344)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC---CC----HHHHHHHHHHHhcCCCcEEEEECCC---CHHHHHHHHHCCcCEE
Confidence 456778888899999999999886532 21 1223334444432212233333332 3577788889999987
Q ss_pred ecchhchH--HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 211 AHNIETVK--RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 211 ~~~ies~~--~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.+..-+.+ ...+..+......++....++.+++ .|+.+...++-.+-...+++.+..+.+.+++++.+.+
T Consensus 87 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~--~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~i~~ 158 (344)
T TIGR02146 87 DIFFGTSKLLRIAEHRSDAKSILESARETIEYAKS--AGLEVRFSAEDTFRSELADLLSIYETVGVFGVDRVGI 158 (344)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 65432211 1122221012234567778888888 8998888877766667788999999999999998765
No 291
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=87.97 E-value=14 Score=36.90 Aligned_cols=134 Identities=23% Similarity=0.256 Sum_probs=82.5
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
+-.+.++.+.+.|++-|.+...++ ....+.+.++.|++.+|++.|-+ +...+.+.+..+.++|+|.|-+++
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g------~~~~~~~~i~~i~~~~~~~~vi~---G~v~t~~~a~~l~~aGad~i~vg~ 294 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHG------HSIYVIDSIKEIKKTYPDLDIIA---GNVATAEQAKALIDAGADGLRVGI 294 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCC------cHhHHHHHHHHHHHhCCCCCEEE---EeCCCHHHHHHHHHhCCCEEEECC
Confidence 345666788889999999865443 13578899999999888876544 223488999999999999996554
Q ss_pred hchH-HHHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 215 ETVK-RLQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 215 es~~-~~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
=... ...+.+.+-+ ....-..+..+.+++ .|+.+-++- | -.|..|+.+.+ .+|.+.+.++..+
T Consensus 295 g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~--~~vpviadG--G-i~~~~di~kAl----a~GA~~V~~G~~~ 359 (450)
T TIGR01302 295 GPGSICTTRIVAGVGVPQITAVYDVAEYAAQ--SGIPVIADG--G-IRYSGDIVKAL----AAGADAVMLGSLL 359 (450)
T ss_pred CCCcCCccceecCCCccHHHHHHHHHHHHhh--cCCeEEEeC--C-CCCHHHHHHHH----HcCCCEEEECchh
Confidence 2110 0111111111 133333444455555 666532210 3 24566766654 4799999987655
No 292
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=87.85 E-value=3.6 Score=38.44 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=54.8
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++.+.+.++.+.+.|++.|.|..-..-.. ..++.++++.+++..+++.+.+- +++.-+.-.-.-.-.++|++.
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~ 227 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDTIGVGT----PGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITV 227 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccccCccC----HHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCE
Confidence 4578889999999999999999943332212 37899999999988776554431 333222233333346899999
Q ss_pred eecchhc
Q 018731 210 FAHNIET 216 (351)
Q Consensus 210 i~~~ies 216 (351)
+..++..
T Consensus 228 id~s~~G 234 (287)
T PRK05692 228 FDASVGG 234 (287)
T ss_pred EEEEccc
Confidence 9765544
No 293
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=87.82 E-value=5.3 Score=36.28 Aligned_cols=80 Identities=23% Similarity=0.226 Sum_probs=49.1
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCc---------------HHHHHHHHHHHHHhCCCcEEEEee---cCCC
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGG---------------SGHFARTVKAMKKQKPDIMVECLT---SDFR 193 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~---------------~~~~~~li~~ik~~~p~i~i~~~~---~~~~ 193 (351)
+.+...+.++.+.+.|++.+-+.=-..+...|+. .+...++++.+++.. ++.+.+++ +-+.
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~~ 90 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPILQ 90 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHHH
Confidence 3467788888999999998888411111122221 125667888887653 33443322 2111
Q ss_pred -CCHHHHHHHHHcCCCeeec
Q 018731 194 -GDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 194 -~~~e~l~~L~~aG~~~i~~ 212 (351)
.-+..++.++++|++.+.+
T Consensus 91 ~G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 91 YGLERFLRDAKEAGVDGLII 110 (242)
T ss_pred hCHHHHHHHHHHCCCcEEEE
Confidence 1268899999999999876
No 294
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=87.57 E-value=21 Score=32.30 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=76.3
Q ss_pred CcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCC--------CCHHHHHHHHHcCCCeeecchhchHH
Q 018731 148 VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR--------GDLRAVETLVHSGLDVFAHNIETVKR 219 (351)
Q Consensus 148 ~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~--------~~~e~l~~L~~aG~~~i~~~ies~~~ 219 (351)
++.+-|.+|....++ .+.+.+.++..+++ ++.+. +.+.. .-++.++..++.|++.|-++--+.
T Consensus 25 ID~lKfg~Gt~~l~~---~~~l~eki~la~~~--~V~v~--~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~-- 95 (237)
T TIGR03849 25 ITFVKFGWGTSALID---RDIVKEKIEMYKDY--GIKVY--PGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSM-- 95 (237)
T ss_pred eeeEEecCceEeecc---HHHHHHHHHHHHHc--CCeEe--CCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCcc--
Confidence 667788888754333 25677888877876 44442 22211 124677899999999986652221
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--C-----CCHHHHHHHHHHHHhCCCCEEee
Q 018731 220 LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--G-----ESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 220 ~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--g-----Et~e~~~~~l~~l~~lg~d~i~i 282 (351)
.-+.+++++.|+.+++ .|+.+.+- +|. . .+.+++.+.++.-.+.|++.|-+
T Consensus 96 --------~i~~~~~~rlI~~~~~--~g~~v~~E--vG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~Vii 153 (237)
T TIGR03849 96 --------EISLEERCNLIERAKD--NGFMVLSE--VGKKSPEKDSELTPDDRIKLINKDLEAGADYVII 153 (237)
T ss_pred --------CCCHHHHHHHHHHHHh--CCCeEecc--ccccCCcccccCCHHHHHHHHHHHHHCCCcEEEE
Confidence 3467888899999999 89986654 444 2 45567777777778899998777
No 295
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=87.56 E-value=11 Score=35.04 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 230 ~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+.+++.+.++.+.+...| ...+|+|.+.+.++..+..+.+.++|+|.+.+
T Consensus 51 s~eEr~~l~~~~~~~~~~---~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 51 TPDEYAQVVRAAVEETAG---RVPVLAGAGYGTATAIAYAQAAEKAGADGILL 100 (289)
T ss_pred CHHHHHHHHHHHHHHhCC---CCCEEEecCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 444555555544442112 12234444335555555666666666665544
No 296
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=87.49 E-value=4.9 Score=37.42 Aligned_cols=122 Identities=14% Similarity=0.110 Sum_probs=71.4
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+++.+.+.++.+.+.|++.|.|..-..-.. ...+.++++.+++..|++.+++- +++.-+--.-.-.-.++|++.|
T Consensus 145 ~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~----P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~v 220 (280)
T cd07945 145 SPDYVFQLVDFLSDLPIKRIMLPDTLGILS----PFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGL 220 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCCC----HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEE
Confidence 567888889999999999999843322212 36899999999988777655532 3332222333344567899998
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
..++-.+-+ .- .....++.+..++. . .|+.+ |-+.+.+.++.+++.+
T Consensus 221 d~s~~GlGe---~a--GN~~~E~~v~~L~~--~--~g~~t--------~idl~~l~~~~~~v~~ 267 (280)
T cd07945 221 HTTVNGLGE---RA--GNAPLASVIAVLKD--K--LKVKT--------NIDEKRLNRASRLVET 267 (280)
T ss_pred EEecccccc---cc--cCccHHHHHHHHHH--h--cCCCc--------CcCHHHHHHHHHHHHH
Confidence 654433211 10 02355666665532 1 34432 2344555555555544
No 297
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=87.45 E-value=9 Score=36.81 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=54.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~--i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++.+.+.++.+.+.|++.|.|..-..-.. ...+.++++.+++.+|. +.+++ +++.-+--.-.-.-.++|++
T Consensus 194 ~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~----P~~v~~lv~~l~~~~~~~~i~~H~-Hnd~GlA~AN~lAA~~aGa~ 268 (347)
T PLN02746 194 VPPSKVAYVAKELYDMGCYEISLGDTIGVGT----PGTVVPMLEAVMAVVPVDKLAVHF-HDTYGQALANILVSLQMGIS 268 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcCCcC----HHHHHHHHHHHHHhCCCCeEEEEE-CCCCChHHHHHHHHHHhCCC
Confidence 4678889999999999999999943322112 37899999999988765 34444 33322223333345678999
Q ss_pred eeecchhc
Q 018731 209 VFAHNIET 216 (351)
Q Consensus 209 ~i~~~ies 216 (351)
.+...+-.
T Consensus 269 ~vd~sv~G 276 (347)
T PLN02746 269 TVDSSVAG 276 (347)
T ss_pred EEEEeccc
Confidence 98765544
No 298
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=87.43 E-value=7.2 Score=35.18 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=54.2
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+.+.|++++++..-+. ... ...-.++++.+.+.. ++.+.+ .++..+.|.++.+.++|++++.+
T Consensus 34 ~~dp~~~a~~~~~~g~~~l~i~DLd~--~~~--~~~n~~~i~~i~~~~-~~~v~v--gGGir~~edv~~~l~~Ga~~vii 106 (233)
T cd04723 34 TSDPLDVARAYKELGFRGLYIADLDA--IMG--RGDNDEAIRELAAAW-PLGLWV--DGGIRSLENAQEWLKRGASRVIV 106 (233)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCcc--ccC--CCccHHHHHHHHHhC-CCCEEE--ecCcCCHHHHHHHHHcCCCeEEE
Confidence 34778889999999999998865443 111 123456777776643 344443 44666889999999999999988
Q ss_pred chhch
Q 018731 213 NIETV 217 (351)
Q Consensus 213 ~ies~ 217 (351)
|-+++
T Consensus 107 gt~~~ 111 (233)
T cd04723 107 GTETL 111 (233)
T ss_pred cceec
Confidence 76664
No 299
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=87.42 E-value=11 Score=35.27 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHH
Q 018731 230 GYEQSLEVLKHAKL 243 (351)
Q Consensus 230 ~~~~~l~~i~~~~~ 243 (351)
+.++.++..+.+.+
T Consensus 81 ~t~~~i~la~~a~~ 94 (290)
T TIGR00683 81 NLKEAVELGKYATE 94 (290)
T ss_pred CHHHHHHHHHHHHH
Confidence 44445555555544
No 300
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=87.28 E-value=20 Score=32.35 Aligned_cols=128 Identities=9% Similarity=0.041 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHh-CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 134 MEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 134 eei~~~~~~~~~-~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..+.+.++.+.+ .|++++++..-+.. .. +...-.++++.|.+. .++.+.+ .++..+.|.++.+.++|++++.+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a--~~-~~~~n~~~I~~i~~~-~~~pi~v--GGGIrs~e~v~~~l~~Ga~kvvi 104 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGA--KA-QHAREFDYIKSLRRL-TTKDIEV--GGGIRTKSQIMDYFAAGINYCIV 104 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECccc--cc-CCcchHHHHHHHHhh-cCCeEEE--cCCcCCHHHHHHHHHCCCCEEEE
Confidence 356667888887 69999998654431 11 123446777777764 3555554 56667899999999999999988
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCC-CCeEEEeeeee------C-CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKK-GLITKSSIMLG------L-GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~-Gi~v~~~~IvG------l-gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|-++.++ + +.++.+.+.++ .+-++.+.--| . ..+.-+..+.++.+.++++..+-+
T Consensus 105 gt~a~~~-----------~----~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~ 167 (234)
T PRK13587 105 GTKGIQD-----------T----DWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIY 167 (234)
T ss_pred CchHhcC-----------H----HHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 7665432 1 11112222111 12233343222 1 234445677777778888876555
No 301
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=87.28 E-value=27 Score=33.00 Aligned_cols=173 Identities=16% Similarity=0.104 Sum_probs=98.8
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++++.+.+..-|.-.+... +...+.+.+..+++.+.+..+.+.|.+ .-|.-.+.|.+..-.++|+++|-
T Consensus 26 n~e~~~avi~AAe~~~sPvIlq~s~~~--~~~~g~~~~~~~~~~~a~~~~~VPVal-HLDHg~~~e~i~~ai~~GftSVM 102 (307)
T PRK05835 26 NFEMLNAIFEAGNEENSPLFIQASEGA--IKYMGIDMAVGMVKIMCERYPHIPVAL-HLDHGTTFESCEKAVKAGFTSVM 102 (307)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccH--HhhCChHHHHHHHHHHHHhcCCCeEEE-ECCCCCCHHHHHHHHHcCCCEEE
Confidence 356666777777777777655443322 222235677788888877654456543 33444588999999999999986
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeC-CC---C-----HHHHHHHHHHHHhCCCCEE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGL-GE---S-----DDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGl-gE---t-----~e~~~~~l~~l~~lg~d~i 280 (351)
+.--.++ + ..+.+...++++.++. .|+.|.+- .+-|- ++ . .-+-.+..+|+++.|+|.+
T Consensus 103 ~DgS~l~-~-------eeNi~~T~~vve~Ah~--~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~L 172 (307)
T PRK05835 103 IDASHHA-F-------EENLELTSKVVKMAHN--AGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYL 172 (307)
T ss_pred EeCCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEE
Confidence 5311111 1 1133344577888888 88876553 34343 11 0 1134778899999999987
Q ss_pred eeecccCCCCCccc-ccCCCCHHHHHHHHHHHHhcCcceecc
Q 018731 281 TLGQYLQPTPLHLT-VKEYVTPEKFDFWKAYGESIGFRYVAS 321 (351)
Q Consensus 281 ~i~~~l~PTp~~~~-~~~~v~~~e~~~~~~~~~~~G~~~~~~ 321 (351)
.+. +=.--..+.. ..+.+ ++++++++.+..+...+.+
T Consensus 173 Ava-iGt~HG~Yk~~~~p~L---~f~~L~~I~~~~~iPLVLH 210 (307)
T PRK05835 173 APA-IGTSHGAFKFKGEPKL---DFERLQEVKRLTNIPLVLH 210 (307)
T ss_pred EEc-cCccccccCCCCCCcc---CHHHHHHHHHHhCCCEEEe
Confidence 763 2011112210 11223 4555555555556554443
No 302
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=87.27 E-value=14 Score=32.67 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=61.5
Q ss_pred eEEEEeeccCCCCCCcCcccCC-CCC-C-CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKT-SRN-P-APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~-~~~-~-~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
..+++.+..+|. +.. ++. + ....+++....+......|.+.++|..++....+ .+ .++++.+++.
T Consensus 107 p~gYiv~~~~~~-------v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~-v~----~e~i~~Vk~~ 174 (205)
T TIGR01769 107 PMAYLIVGPGGA-------VGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYP-VN----PETISLVKKA 174 (205)
T ss_pred ceEEEEECCCCc-------eeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCC-CC----HHHHHHHHHh
Confidence 456666666652 222 221 1 2356788888887777899999999665432111 11 5667777765
Q ss_pred CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
. ++.+.+ .++..+.+.++.+.++|.|.+-+|
T Consensus 175 ~-~~Pv~v--GGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 175 S-GIPLIV--GGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred h-CCCEEE--eCCCCCHHHHHHHHHcCCCEEEeC
Confidence 3 444433 456679999999999999988653
No 303
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=87.16 E-value=8.2 Score=30.92 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
+.++.+.+.+.+.|.+++-... . .+.+.++++.+++..+ ++.+-+ . +...++..+.++++|+|.+.+
T Consensus 41 ~~~~~a~~~~~d~V~iS~~~~~-~----~~~~~~~~~~L~~~~~~~i~i~~--G-G~~~~~~~~~~~~~G~d~~~~ 108 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSSLSGG-H----MTLFPEVIELLRELGAGDILVVG--G-GIIPPEDYELLKEMGVAEIFG 108 (122)
T ss_pred HHHHHHHHcCCCEEEEcccchh-h----HHHHHHHHHHHHhcCCCCCEEEE--E-CCCCHHHHHHHHHCCCCEEEC
Confidence 3445556778998988776532 2 3678889999998755 444433 2 222467789999999998754
No 304
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=87.11 E-value=23 Score=32.03 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=79.3
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++.+.+......|+..|.+= -++|-..-...++..+-+.++. .+++++. .++++++...+...+.+++-.
T Consensus 22 d~v~aA~~a~~aGAdgITvH--lReDrRHI~d~Dv~~l~~~~~~---~lNlE~a-----~~~emi~ia~~vkP~~vtLVP 91 (237)
T TIGR00559 22 DPLRAALIAEQAGADGITVH--LREDRRHIQDRDVYDLKEALTT---PFNIEMA-----PTEEMIRIAEEIKPEQVTLVP 91 (237)
T ss_pred CHHHHHHHHHHcCCCEEEec--CCCCcCcCCHHHHHHHHHHcCC---CEEeccC-----CCHHHHHHHHHcCCCEEEECC
Confidence 34555666677899988771 1111111112344444333322 4677653 278999999999999999877
Q ss_pred hchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 215 ETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 215 es~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|.-.++. ..--+-....+..-+.++.+++ .||.|+.. + .-. .+.++..+++|+|.|-++
T Consensus 92 Ekr~ElTTegGldv~~~~~~l~~~i~~l~~--~gI~VSLF--i--DP~----~~qi~~A~~~GAd~VELh 151 (237)
T TIGR00559 92 EARDEVTTEGGLDVARLKDKLCELVKRFHA--AGIEVSLF--I--DAD----KDQISAAAEVGADRIEIH 151 (237)
T ss_pred CCCCCccCCcCchhhhCHHHHHHHHHHHHH--CCCEEEEE--e--CCC----HHHHHHHHHhCcCEEEEe
Confidence 6655432 1000012355677788899999 99987554 2 122 455677789999999884
No 305
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=86.99 E-value=16 Score=33.48 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=51.0
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++.+.+.++.+.+.|++.|.|..-..-.. .+.+.++++.+++..+.+.+..- +++.-+--.-.-...++|++.
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~ 213 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYVTDSAGAML----PDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATR 213 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCcC----HHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCE
Confidence 4568889999999999999999843222222 37899999999998754344331 333222222233344789999
Q ss_pred eecc
Q 018731 210 FAHN 213 (351)
Q Consensus 210 i~~~ 213 (351)
|-.+
T Consensus 214 vd~s 217 (263)
T cd07943 214 IDGS 217 (263)
T ss_pred EEee
Confidence 8544
No 306
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=86.93 E-value=13 Score=35.02 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
+.++.+.+.|++.|...=-|.+- +.-+.++..+.++.+++.-.| ...+|+|. +.+.++..+..+..+++
T Consensus 29 ~lv~~li~~Gv~gi~~~GttGE~-------~~Ls~eEr~~v~~~~v~~~~g---rvpviaG~g~~~t~eai~lak~a~~~ 98 (299)
T COG0329 29 RLVEFLIAAGVDGLVVLGTTGES-------PTLTLEERKEVLEAVVEAVGG---RVPVIAGVGSNSTAEAIELAKHAEKL 98 (299)
T ss_pred HHHHHHHHcCCCEEEECCCCccc-------hhcCHHHHHHHHHHHHHHHCC---CCcEEEecCCCcHHHHHHHHHHHHhc
Confidence 56777788898887653222211 134777778888777763323 13378888 56688888888999999
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|-+.+
T Consensus 99 Gad~il~ 105 (299)
T COG0329 99 GADGILV 105 (299)
T ss_pred CCCEEEE
Confidence 9997665
No 307
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=86.61 E-value=20 Score=33.82 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.|.++=-|.+- ..-+.+++.+.++.+.+...| ...+|+|. ..+.++..+.++...+.
T Consensus 33 ~lv~~li~~Gv~Gi~v~GstGE~-------~~Lt~eEr~~v~~~~~~~~~g---rvpvi~Gv~~~~t~~ai~~a~~A~~~ 102 (309)
T cd00952 33 RLVERLIAAGVDGILTMGTFGEC-------ATLTWEEKQAFVATVVETVAG---RVPVFVGATTLNTRDTIARTRALLDL 102 (309)
T ss_pred HHHHHHHHcCCCEEEECcccccc-------hhCCHHHHHHHHHHHHHHhCC---CCCEEEEeccCCHHHHHHHHHHHHHh
Confidence 45555666666666543111111 122555555555555542222 23456666 35666666666777777
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 103 Gad~vlv 109 (309)
T cd00952 103 GADGTML 109 (309)
T ss_pred CCCEEEE
Confidence 7776555
No 308
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=86.53 E-value=5 Score=37.22 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=54.3
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+++.+.+.++.+.+.|++.|.|..-..-.. ...+.++++.+++..|++.+.+- +++.-+-..-.-.-.++|++.|
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~i 222 (274)
T cd07938 147 PPERVAEVAERLLDLGCDEISLGDTIGVAT----PAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRF 222 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCccC----HHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 577888899999999999999943332212 37899999999998877655432 3332223333444568899998
Q ss_pred ecchh
Q 018731 211 AHNIE 215 (351)
Q Consensus 211 ~~~ie 215 (351)
...+-
T Consensus 223 d~t~~ 227 (274)
T cd07938 223 DSSVG 227 (274)
T ss_pred EEecc
Confidence 65544
No 309
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=86.34 E-value=29 Score=32.43 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=83.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++.+.+.+..-|.-.+...-.+ .+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.+....++|+++|-
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~--~g~~~~~~~~~~~A~~~-~VPVal-HLDH~~~~e~i~~ai~~GftSVM 102 (284)
T PRK12857 27 NMEIVQAIVAAAEAEKSPVIIQASQGAIKY--AGIEYISAMVRTAAEKA-SVPVAL-HLDHGTDFEQVMKCIRNGFTSVM 102 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHhhh--CCHHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHcCCCeEE
Confidence 345666777777777776555443322112 23677888888777654 455533 33433477899999999999986
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeC-CC----C----HHHHHHHHHHHHhCCCCEE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGL-GE----S----DDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGl-gE----t----~e~~~~~l~~l~~lg~d~i 280 (351)
+.--.++ + ..+.+...+.++.++. .|+.|.+- -|-|- +. + .-+..+..+|+++.|+|.+
T Consensus 103 ~DgS~lp-~-------eeNi~~T~~vv~~Ah~--~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~L 172 (284)
T PRK12857 103 IDGSKLP-L-------EENIALTKKVVEIAHA--VGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDAL 172 (284)
T ss_pred EeCCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEE
Confidence 5311111 1 1133344577788888 88876553 34343 11 1 1256788899999999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 173 Av 174 (284)
T PRK12857 173 AI 174 (284)
T ss_pred ee
Confidence 77
No 310
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=86.31 E-value=20 Score=36.11 Aligned_cols=131 Identities=23% Similarity=0.299 Sum_probs=81.3
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchh
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ie 215 (351)
..+.++.+.+.|++.+++.+.+. ....+.+.++.+++.+|++.+-+ +...+.+.+..+.++|++.|-++.=
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g------~~~~vl~~i~~i~~~~p~~~vi~---g~v~t~e~a~~l~~aGad~i~vg~g 299 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHG------HSEGVLDRVREIKAKYPDVQIIA---GNVATAEAARALIEAGADAVKVGIG 299 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCC------cchhHHHHHHHHHhhCCCCCEEE---eccCCHHHHHHHHHcCCCEEEECCC
Confidence 36777888889999777654332 12578899999999887766543 2335889999999999999976541
Q ss_pred chHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeee--eCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 216 TVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIML--GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 216 s~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv--GlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
...- ..+.+.+-+ .+++-..+..+.+++ .|+. +|. | -.|..|+.+.+. +|.+.+.++..+
T Consensus 300 ~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~--~~~~----viadGG-i~~~~di~kAla----~GA~~v~~G~~~ 363 (486)
T PRK05567 300 PGSICTTRIVAGVGVPQITAIADAAEAAKK--YGIP----VIADGG-IRYSGDIAKALA----AGASAVMLGSML 363 (486)
T ss_pred CCccccceeecCCCcCHHHHHHHHHHHhcc--CCCe----EEEcCC-CCCHHHHHHHHH----hCCCEEEECccc
Confidence 1110 111111111 234444444444444 5654 344 3 256677766654 799999988666
No 311
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=86.29 E-value=19 Score=31.89 Aligned_cols=110 Identities=18% Similarity=0.195 Sum_probs=69.8
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC-cEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~-i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+.++..+.++.+.+.|++-+-++--++ .-.+.++.+++.+++ +.|.+ +..++.+.++...++|.+.+
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~~---------~~~~~i~~l~~~~~~~~~iGa---GTV~~~~~~~~a~~aGA~fi 87 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNSP---------DPFDSIAALVKALGDRALIGA---GTVLSPEQVDRLADAGGRLI 87 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCc---------cHHHHHHHHHHHcCCCcEEeE---EecCCHHHHHHHHHcCCCEE
Confidence 567888999999999999888763222 233567777777664 55544 23458899999999999987
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
... ..+ . +.++.++. .|+. ++.| ..|.+|+.+. .+.|.|.+.+
T Consensus 88 vsp--------------~~~-~---~v~~~~~~--~~~~----~~~G-~~t~~E~~~A----~~~Gad~vk~ 130 (206)
T PRK09140 88 VTP--------------NTD-P---EVIRRAVA--LGMV----VMPG-VATPTEAFAA----LRAGAQALKL 130 (206)
T ss_pred ECC--------------CCC-H---HHHHHHHH--CCCc----EEcc-cCCHHHHHHH----HHcCCCEEEE
Confidence 431 112 1 22333344 4543 2334 5666665443 3577887776
No 312
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=86.25 E-value=6 Score=36.59 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=51.8
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+++.+.+.++.+.+.|++.|.|..-..... .+.+.++++.+++..|++.+.+- +++.-+.-.-.-.-.++|+++|
T Consensus 149 ~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~i 224 (273)
T cd07941 149 NPEYALATLKAAAEAGADWLVLCDTNGGTL----PHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQV 224 (273)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCCCCC----HHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEE
Confidence 567778888888899999998843322223 37899999999998877655542 3333222233333446899998
Q ss_pred ecch
Q 018731 211 AHNI 214 (351)
Q Consensus 211 ~~~i 214 (351)
-.++
T Consensus 225 d~s~ 228 (273)
T cd07941 225 QGTI 228 (273)
T ss_pred EEec
Confidence 6443
No 313
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=86.10 E-value=12 Score=34.66 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
+.++.+.++|++.+.++--+.+-. .-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+.++.++++
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~-------~Lt~~Er~~l~~~~~~~~~~---~~~vi~gv~~~st~~~i~~a~~a~~~ 95 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFY-------SLTDEERKELLEIVVEAAAG---RVPVIAGVGANSTEEAIELARHAQDA 95 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGG-------GS-HHHHHHHHHHHHHHHTT---SSEEEEEEESSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECCCCcccc-------cCCHHHHHHHHHHHHHHccC---ceEEEecCcchhHHHHHHHHHHHhhc
Confidence 566777778888876642222110 23555666666655542222 23467777 66888888888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 96 Gad~v~v 102 (289)
T PF00701_consen 96 GADAVLV 102 (289)
T ss_dssp T-SEEEE
T ss_pred CceEEEE
Confidence 8887665
No 314
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=86.08 E-value=11 Score=35.43 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=41.5
Q ss_pred CCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC--------cHHHHHHHHHHHHHhCCCcEE
Q 018731 126 RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--------GSGHFARTVKAMKKQKPDIMV 185 (351)
Q Consensus 126 ~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~--------~~~~~~~li~~ik~~~p~i~i 185 (351)
.+..+.+.+.+.++++.+.+.|++.|.|-|.......+. .-.-+.+.++.||+.+|++.|
T Consensus 43 PG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~v 110 (320)
T cd04824 43 PGINRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLI 110 (320)
T ss_pred CCceeeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCCCcEE
Confidence 344456678899999999999999998877631111110 012457899999999998643
No 315
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=86.01 E-value=26 Score=31.76 Aligned_cols=128 Identities=18% Similarity=0.135 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchh
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ie 215 (351)
+.+.+......|...|.+== ++|-..-..+++..+-+.++. .+++++.. ++|+++...+...+.+++-.|
T Consensus 24 pv~aA~~a~~aGAdgITvHl--ReDrRHI~d~Dv~~L~~~~~~---~lNlE~a~-----t~e~~~ia~~~kP~~vtLVPE 93 (239)
T PF03740_consen 24 PVEAARIAEEAGADGITVHL--REDRRHIQDRDVRRLRELVKT---PLNLEMAP-----TEEMVDIALKVKPDQVTLVPE 93 (239)
T ss_dssp HHHHHHHHHHTT-SEEEEEB---TT-SSS-HHHHHHHHHH-SS---EEEEEEES-----SHHHHHHHHHH--SEEEEE--
T ss_pred HHHHHHHHHHcCCCEEEecc--CCCcCcCCHHHHHHHHHHccc---CEEeccCC-----CHHHHHHHHhCCcCEEEECCC
Confidence 45556666778999887621 111111112455554444433 26777743 789999999999999998777
Q ss_pred chHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 216 TVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 216 s~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.-.+.. ..--+-....+...+.++.+++ .||.|+..+=. . .+.++..+++|+|.|-++
T Consensus 94 ~r~e~TTegGldv~~~~~~l~~~i~~L~~--~gIrvSLFiDP----~----~~qi~~A~~~Gad~VELh 152 (239)
T PF03740_consen 94 KREELTTEGGLDVAGNRDRLKPVIKRLKD--AGIRVSLFIDP----D----PEQIEAAKELGADRVELH 152 (239)
T ss_dssp SGGGBSTTSSB-TCGGHHHHHHHHHHHHH--TT-EEEEEE-S---------HHHHHHHHHTT-SEEEEE
T ss_pred CCCCcCCCcCChhhcCHHHHHHHHHHHHh--CCCEEEEEeCC----C----HHHHHHHHHcCCCEEEEe
Confidence 655531 1000112356788889999999 99986554321 1 345677789999999985
No 316
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=85.77 E-value=15 Score=41.13 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=84.1
Q ss_pred CCchhHHHHHHHHHh--CCCcEEEEeccCCCCCC--CCcHHHHHHHHHHHHHhCCCcEEEEeecC--C--CC--C----H
Q 018731 131 PDPMEPENTAKAIAS--WGVDYIVLTSVDRDDIP--DGGSGHFARTVKAMKKQKPDIMVECLTSD--F--RG--D----L 196 (351)
Q Consensus 131 ~~~eei~~~~~~~~~--~G~~~I~ltgg~~~~l~--~~~~~~~~~li~~ik~~~p~i~i~~~~~~--~--~~--~----~ 196 (351)
+..++++.++..+.+ .|+..+-+.||-..+-. -.+ +.=++-++.+++..|++.+.++..+ . .. . +
T Consensus 550 ~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~-EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~ 628 (1143)
T TIGR01235 550 VRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLH-EDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVK 628 (1143)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhc-CCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHH
Confidence 345567777777776 48888877777532110 000 1224567778888888776654322 1 10 1 3
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeee------C--CCCHHHHHHH
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG------L--GESDDDLKEA 268 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG------l--gEt~e~~~~~ 268 (351)
..++..++.|+|.+-+ .++ -.+.+....+++.+++ .|..+...+.+- . -.|.+-+.+.
T Consensus 629 ~f~~~~~~~Gidifri-fD~-----------lN~~~n~~~~~~~~~~--~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ 694 (1143)
T TIGR01235 629 YFVKQAAQGGIDIFRV-FDS-----------LNWVENMRVGMDAVAE--AGKVVEAAICYTGDILDPARPKYDLKYYTNL 694 (1143)
T ss_pred HHHHHHHHcCCCEEEE-Ccc-----------CcCHHHHHHHHHHHHH--cCCEEEEEEEEeccCCCcCCCCCCHHHHHHH
Confidence 5677778889998743 111 2244455566777777 787766666542 1 2457777788
Q ss_pred HHHHHhCCCCEEee
Q 018731 269 MADLRSIDVDILTL 282 (351)
Q Consensus 269 l~~l~~lg~d~i~i 282 (351)
++.+.+.|+|.+.+
T Consensus 695 ak~l~~~Gad~I~i 708 (1143)
T TIGR01235 695 AVELEKAGAHILGI 708 (1143)
T ss_pred HHHHHHcCCCEEEE
Confidence 88888888887777
No 317
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=85.43 E-value=19 Score=33.10 Aligned_cols=122 Identities=18% Similarity=0.212 Sum_probs=73.5
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec-ch
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH-NI 214 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~-~i 214 (351)
+++.++.+.+.|++.+.+ ++|+ .+...++++..+++... .|-..+|.. +++.++.+.+..-+.|+. +.
T Consensus 106 ~e~f~~~~~~aGvdGvii-----pDLp---~ee~~~~~~~~~~~gl~-~I~lvap~t--~~eri~~i~~~s~gfIY~vs~ 174 (258)
T PRK13111 106 VERFAADAAEAGVDGLII-----PDLP---PEEAEELRAAAKKHGLD-LIFLVAPTT--TDERLKKIASHASGFVYYVSR 174 (258)
T ss_pred HHHHHHHHHHcCCcEEEE-----CCCC---HHHHHHHHHHHHHcCCc-EEEEeCCCC--CHHHHHHHHHhCCCcEEEEeC
Confidence 455677778899999998 3576 57888888888887322 343345543 578888888887776654 32
Q ss_pred hchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCC-CHHHHHHHHHHHHhCCCCEEeeec
Q 018731 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGE-SDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 215 es~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgE-t~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
-...-. + ........+.++.+++. . ..-+++|+|- |.+++.+.+. . +|-+-++.
T Consensus 175 ~GvTG~----~--~~~~~~~~~~i~~vk~~-~----~~pv~vGfGI~~~e~v~~~~~----~-ADGviVGS 229 (258)
T PRK13111 175 AGVTGA----R--SADAADLAELVARLKAH-T----DLPVAVGFGISTPEQAAAIAA----V-ADGVIVGS 229 (258)
T ss_pred CCCCCc----c--cCCCccHHHHHHHHHhc-C----CCcEEEEcccCCHHHHHHHHH----h-CCEEEEcH
Confidence 111000 0 11122334455555551 1 3456789965 7788777653 3 67666653
No 318
>PLN02591 tryptophan synthase
Probab=85.27 E-value=27 Score=31.93 Aligned_cols=124 Identities=16% Similarity=0.162 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcE-EEEeecCCCCCHHHHHHHHHcCCCeeec-
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM-VECLTSDFRGDLRAVETLVHSGLDVFAH- 212 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~-i~~~~~~~~~~~e~l~~L~~aG~~~i~~- 212 (351)
-+.+.++.+.+.|++.+.+ ++|+ .+...++.+..+++ ++. |-+.+|.. +++.++.+.+..-..|+.
T Consensus 94 G~~~F~~~~~~aGv~Gvii-----pDLP---~ee~~~~~~~~~~~--gl~~I~lv~Ptt--~~~ri~~ia~~~~gFIY~V 161 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVV-----PDLP---LEETEALRAEAAKN--GIELVLLTTPTT--PTERMKAIAEASEGFVYLV 161 (250)
T ss_pred HHHHHHHHHHHcCCCEEEe-----CCCC---HHHHHHHHHHHHHc--CCeEEEEeCCCC--CHHHHHHHHHhCCCcEEEe
Confidence 3456677788899999998 4576 57888888888887 553 44545543 577888888776565543
Q ss_pred chhchHHHHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCC-HHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 213 NIETVKRLQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGES-DDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 213 ~ies~~~~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt-~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
+... +++. .....+..+.++.+++ . +..-+++|+|-+ .|++.+ +.+.|.|-+-++..+
T Consensus 162 s~~G-------vTG~~~~~~~~~~~~i~~vk~--~---~~~Pv~vGFGI~~~e~v~~----~~~~GADGvIVGSal 221 (250)
T PLN02591 162 SSTG-------VTGARASVSGRVESLLQELKE--V---TDKPVAVGFGISKPEHAKQ----IAGWGADGVIVGSAM 221 (250)
T ss_pred eCCC-------CcCCCcCCchhHHHHHHHHHh--c---CCCceEEeCCCCCHHHHHH----HHhcCCCEEEECHHH
Confidence 3211 1111 1123344555666665 2 245578899655 777654 567889988876443
No 319
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=85.23 E-value=32 Score=32.02 Aligned_cols=135 Identities=17% Similarity=0.146 Sum_probs=77.5
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+-+...++...+.+..-|.-.+...-.+. ++.+.+...++.+.+....+.+.. .-|.-.+.+.+....++|++.|.
T Consensus 25 n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~vpv~l-hlDH~~~~e~i~~ai~~Gf~sVm 102 (282)
T TIGR01859 25 NLEWTQAILEAAEEENSPVIIQVSEGAIKYM-GGYKMAVAMVKTLIERMSIVPVAL-HLDHGSSYESCIKAIKAGFSSVM 102 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhhcc-CcHHHHHHHHHHHHHHCCCCeEEE-ECCCCCCHHHHHHHHHcCCCEEE
Confidence 3555667777777777776655443321121 235778888888777652145433 32322367889999999999986
Q ss_pred cchhchHHHHhhhcCCCCCHHH----HHHHHHHHHHhCCCCeEEEee-eeeC------C--CCHHHHHHHHHHHHhCCCC
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQ----SLEVLKHAKLSKKGLITKSSI-MLGL------G--ESDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~----~l~~i~~~~~~~~Gi~v~~~~-IvGl------g--Et~e~~~~~l~~l~~lg~d 278 (351)
+-- +..++++ ..+.++.++. .|+.+..-+ .+|- | .+..+..+..+++++.|+|
T Consensus 103 id~------------s~l~~~eni~~t~~v~~~a~~--~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD 168 (282)
T TIGR01859 103 IDG------------SHLPFEENLALTKKVVEIAHA--KGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVD 168 (282)
T ss_pred ECC------------CCCCHHHHHHHHHHHHHHHHH--cCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcC
Confidence 521 1223333 3355555566 677654322 1221 1 1122555667777778999
Q ss_pred EEee
Q 018731 279 ILTL 282 (351)
Q Consensus 279 ~i~i 282 (351)
.+.+
T Consensus 169 ~Lav 172 (282)
T TIGR01859 169 YLAA 172 (282)
T ss_pred EEee
Confidence 9885
No 320
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=85.16 E-value=14 Score=33.38 Aligned_cols=133 Identities=19% Similarity=0.201 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCC--------CCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDR--------DDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~--------~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
+|+++.+.. .....++|.--.+ -++. +..+.+.++++.+++. ++.+..+.. -+.+.++.-++.
T Consensus 76 ~em~~ia~~---~kP~~vtLVPE~r~E~TTegGldv~-~~~~~l~~~i~~L~~~--gIrVSLFid---P~~~qi~~A~~~ 146 (239)
T PRK05265 76 EEMLDIALE---VKPHQVTLVPEKREELTTEGGLDVA-GQFDKLKPAIARLKDA--GIRVSLFID---PDPEQIEAAAEV 146 (239)
T ss_pred HHHHHHHHH---CCCCEEEECCCCCCCccCCccchhh-cCHHHHHHHHHHHHHC--CCEEEEEeC---CCHHHHHHHHHh
Confidence 555555544 4456676632111 1121 2357888899999886 778776652 167999999999
Q ss_pred CCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecc
Q 018731 206 GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQY 285 (351)
Q Consensus 206 G~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~ 285 (351)
|.++|-+.-..+-..+..- ....++....+.+.+++ .|+.|++ |+|-+.+.+... ..+ -++..++++..
T Consensus 147 GAd~VELhTG~yA~a~~~~--~~~el~~~~~aa~~a~~--lGL~VnA----GHgLny~Nv~~i-~~i--p~i~EvnIGHs 215 (239)
T PRK05265 147 GADRIELHTGPYADAKTEA--EAAELERIAKAAKLAAS--LGLGVNA----GHGLNYHNVKPI-AAI--PGIEELNIGHA 215 (239)
T ss_pred CcCEEEEechhhhcCCCcc--hHHHHHHHHHHHHHHHH--cCCEEec----CCCCCHHhHHHH-hhC--CCCeEEccCHH
Confidence 9999976443332211100 12246777788888888 8888664 677777776652 222 23566777655
Q ss_pred c
Q 018731 286 L 286 (351)
Q Consensus 286 l 286 (351)
+
T Consensus 216 i 216 (239)
T PRK05265 216 I 216 (239)
T ss_pred H
Confidence 4
No 321
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=85.09 E-value=30 Score=31.60 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=46.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCC-CCC----CCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDR-DDI----PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~-~~l----~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+++++.+.++.+.+.|++-|-+.++.. +.. ...+.+++..+++.+++.. ++.+.+=| .+++.++.-.++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-~~piSIDT----~~~~v~~aaL~~ 95 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-DVPISVDT----FNAEVAEAALKA 95 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CCeEEEeC----CcHHHHHHHHHh
Confidence 5678899999999999999988866542 111 1123456778888887653 33443211 145566655556
Q ss_pred CCCeee
Q 018731 206 GLDVFA 211 (351)
Q Consensus 206 G~~~i~ 211 (351)
|.+.|+
T Consensus 96 g~~iIN 101 (258)
T cd00423 96 GADIIN 101 (258)
T ss_pred CCCEEE
Confidence 655443
No 322
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=84.98 E-value=15 Score=33.23 Aligned_cols=134 Identities=16% Similarity=0.202 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCC-CC------CcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDI-PD------GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l-~~------~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
+++++.+.. .....++|.--.+..+ .+ +..+.+.++++.+++. ++.+..+... +++.++.-++.|
T Consensus 73 ~emi~ia~~---vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~--gI~VSLFiDP---~~~qi~~A~~~G 144 (237)
T TIGR00559 73 EEMIRIAEE---IKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAA--GIEVSLFIDA---DKDQISAAAEVG 144 (237)
T ss_pred HHHHHHHHH---cCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHC--CCEEEEEeCC---CHHHHHHHHHhC
Confidence 455555544 3456676632221111 11 2346788889999886 7787765421 679999999999
Q ss_pred CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC-CCEEeeec
Q 018731 207 LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID-VDILTLGQ 284 (351)
Q Consensus 207 ~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg-~d~i~i~~ 284 (351)
.++|-+.-..+-. +...-+ ...++...++.+.+++ .|+.|++ |+|=|.+.+.... +-.+ +..++++.
T Consensus 145 Ad~VELhTG~YA~a~~~~~~--~~el~~i~~aa~~A~~--lGL~VnA----GHgLny~Nv~~i~---~~~~~i~EvnIGH 213 (237)
T TIGR00559 145 ADRIEIHTGPYANAYNKKEM--AEELQRIVKASVHAHS--LGLKVNA----GHGLNYHNVKYFA---EILPYLDELNIGH 213 (237)
T ss_pred cCEEEEechhhhcCCCchhH--HHHHHHHHHHHHHHHH--cCCEEec----CCCCCHHhHHHHH---hCCCCceEEecCH
Confidence 9999765433322 111000 1246677778888888 8888664 5777777664432 3334 56777764
Q ss_pred cc
Q 018731 285 YL 286 (351)
Q Consensus 285 ~l 286 (351)
.+
T Consensus 214 si 215 (237)
T TIGR00559 214 AI 215 (237)
T ss_pred HH
Confidence 44
No 323
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=84.76 E-value=34 Score=31.90 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=81.8
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
.+.+...++.+.+.+..-|.-.+.. .+...+.+.+..+++.+.+.. ++.|.+ .-|.-.+.+.+....++|+++|-+
T Consensus 28 ~e~~~avi~AAe~~~sPvIl~~~~~--~~~~~g~~~~~~~~~~~A~~~-~vPV~l-HLDH~~~~e~i~~Ai~~GftSVM~ 103 (283)
T PRK07998 28 LETTISILNAIERSGLPNFIQIAPT--NAQLSGYDYIYEIVKRHADKM-DVPVSL-HLDHGKTFEDVKQAVRAGFTSVMI 103 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcHh--HHhhCCHHHHHHHHHHHHHHC-CCCEEE-ECcCCCCHHHHHHHHHcCCCEEEE
Confidence 4556666777777776655433322 122234677888888877754 455433 333334778888889999999866
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eeeeeCCCC-------HHHHHHHHHHHHhCCCCEEee
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SIMLGLGES-------DDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~IvGlgEt-------~e~~~~~l~~l~~lg~d~i~i 282 (351)
.--.. ++ ..+.+...+.++.++. .|+.|.+ +.+-|-.+. .-+..+..+|++++|+|.+.+
T Consensus 104 DgS~l-~~-------eeNi~~T~~vve~Ah~--~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAv 172 (283)
T PRK07998 104 DGAAL-PF-------EENIAFTKEAVDFAKS--YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAV 172 (283)
T ss_pred eCCCC-CH-------HHHHHHHHHHHHHHHH--cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeeh
Confidence 21110 11 1133445577788888 8987644 444443110 125566789999999998776
No 324
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=84.64 E-value=35 Score=31.89 Aligned_cols=138 Identities=13% Similarity=0.107 Sum_probs=84.4
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCC-CcHHHHHHHHHHHHHhCC-CcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPD-GGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~-~~~~~~~~li~~ik~~~p-~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
+.+.+...++...+.+..-|.-++... +.. .+.+.+..+++.+.+... ++.|.+ .-|.-.+.+.+....++|+++
T Consensus 27 n~e~~~avi~AAe~~~sPvIiq~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~VPV~l-HLDHg~~~e~i~~ai~~GftS 103 (285)
T PRK07709 27 NLEWTQAILAAAEEEKSPVILGVSEGA--ARHMTGFKTVVAMVKALIEEMNITVPVAI-HLDHGSSFEKCKEAIDAGFTS 103 (285)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcch--hhhcCCHHHHHHHHHHHHHHcCCCCcEEE-ECCCCCCHHHHHHHHHcCCCE
Confidence 356666777777777777555443322 222 246778888888877541 245433 334434789999999999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeC-CC--C----HHHHHHHHHHHHhCCCCEE
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGL-GE--S----DDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGl-gE--t----~e~~~~~l~~l~~lg~d~i 280 (351)
|-+.--.+ ++ ..+.+...+.++.++. .|+.|.+- .|-|- ++ . .-+-.+..+|+++.|+|.+
T Consensus 104 VM~DgS~l-p~-------eeNi~~Trevv~~Ah~--~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~L 173 (285)
T PRK07709 104 VMIDASHH-PF-------EENVETTKKVVEYAHA--RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCL 173 (285)
T ss_pred EEEeCCCC-CH-------HHHHHHHHHHHHHHHH--cCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEE
Confidence 86531111 01 1133344577778888 78876553 34333 11 0 2356788899999999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 174 Av 175 (285)
T PRK07709 174 AP 175 (285)
T ss_pred EE
Confidence 76
No 325
>PRK08185 hypothetical protein; Provisional
Probab=84.57 E-value=35 Score=31.85 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=79.4
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++.+.+.+..-|.-.+...-.+. +.+ +..+++.+.+.. .+.|.+ .-|.-.+.+.+....++|++.|.
T Consensus 22 n~e~~~avi~AAee~~sPvIl~~~~~~~~~~--~~~-~~~~~~~~a~~~-~vPV~l-HLDHg~~~e~i~~ai~~Gf~SVM 96 (283)
T PRK08185 22 DSCFLRAVVEEAEANNAPAIIAIHPNELDFL--GDN-FFAYVRERAKRS-PVPFVI-HLDHGATIEDVMRAIRCGFTSVM 96 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCcchhhhc--cHH-HHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHcCCCEEE
Confidence 4566677777777888876655443221122 233 777777776653 455433 33443478999999999999886
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee-eeeCCCC----------HHHHHHHHHHHHhCCCCEE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI-MLGLGES----------DDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-IvGlgEt----------~e~~~~~l~~l~~lg~d~i 280 (351)
+.--.++. ..+.+...+.++.++. .|+.+..-+ .+|..|. ..+..+..+++++.|+|.+
T Consensus 97 ~D~S~l~~--------eeNi~~t~~vv~~a~~--~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~L 166 (283)
T PRK08185 97 IDGSLLPY--------EENVALTKEVVELAHK--VGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTL 166 (283)
T ss_pred EeCCCCCH--------HHHHHHHHHHHHHHHH--cCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEE
Confidence 53111110 0122333455666677 677654432 2343111 1155677888889999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 167 Av 168 (283)
T PRK08185 167 AV 168 (283)
T ss_pred Ee
Confidence 77
No 326
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=84.54 E-value=21 Score=33.41 Aligned_cols=173 Identities=19% Similarity=0.204 Sum_probs=97.3
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++++.+.+..-|.-.+... +...+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.+....++|+++|-
T Consensus 26 n~e~~~avi~AAe~~~sPvIlq~~~~~--~~~~~~~~~~~~~~~~a~~~-~vPVal-HLDH~~~~e~i~~ai~~GftSVM 101 (287)
T PF01116_consen 26 NLETARAVIEAAEELNSPVILQISPSE--VKYMGLEYLAAMVKAAAEEA-SVPVAL-HLDHGKDFEDIKRAIDAGFTSVM 101 (287)
T ss_dssp SHHHHHHHHHHHHHTTS-EEEEEEHHH--HHHHHHHHHHHHHHHHHHHS-TSEEEE-EEEEE-SHHHHHHHHHHTSSEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcchhh--hhhhhHHHHHHHHHHHHHHc-CCCEEe-ecccCCCHHHHHHHHHhCccccc
Confidence 457777888888888877665444321 11113567888888888775 566643 22222368999999999999986
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eeeeeC--C-CCH-------HHHHHHHHHHHhCCCCE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SIMLGL--G-ESD-------DDLKEAMADLRSIDVDI 279 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~IvGl--g-Et~-------e~~~~~l~~l~~lg~d~ 279 (351)
+.--..+ + ..+.....+.++.+++ .|+.|.+ +.|-|. + ++. .+-.+..+|+++.|+|.
T Consensus 102 ~DgS~l~-~-------eeNi~~T~~vv~~ah~--~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~ 171 (287)
T PF01116_consen 102 IDGSALP-F-------EENIAITREVVEYAHA--YGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDA 171 (287)
T ss_dssp EE-TTS--H-------HHHHHHHHHHHHHHHH--TT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSE
T ss_pred ccCCcCC-H-------HHHHHHHHHHHHhhhh--hCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCE
Confidence 5311111 1 1133344577888888 8887655 445544 1 111 25578889999999999
Q ss_pred EeeecccCCCCCccc-ccCCCCHHHHHHHHHHHHhc-CcceeccC
Q 018731 280 LTLGQYLQPTPLHLT-VKEYVTPEKFDFWKAYGESI-GFRYVASG 322 (351)
Q Consensus 280 i~i~~~l~PTp~~~~-~~~~v~~~e~~~~~~~~~~~-G~~~~~~~ 322 (351)
+.+. +=.--..+.. ..+.+ +++.++++.+.. +...+.+|
T Consensus 172 LAva-iGt~HG~y~~~~~p~L---d~~~L~~I~~~~~~iPLVlHG 212 (287)
T PF01116_consen 172 LAVA-IGTAHGMYKGGKKPKL---DFDRLKEIREAVPDIPLVLHG 212 (287)
T ss_dssp EEE--SSSBSSSBSSSSSTC-----HHHHHHHHHHHHTSEEEESS
T ss_pred EEEe-cCccccccCCCCCccc---CHHHHHHHHHhcCCCCEEEEC
Confidence 7773 2111112211 01222 455565555555 55555443
No 327
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=84.50 E-value=29 Score=32.01 Aligned_cols=124 Identities=14% Similarity=0.217 Sum_probs=76.2
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcE-EEEeecCCCCCHHHHHHHHHcCCCeeec-
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM-VECLTSDFRGDLRAVETLVHSGLDVFAH- 212 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~-i~~~~~~~~~~~e~l~~L~~aG~~~i~~- 212 (351)
-+++.++.+.+.|++.+.+ ++++ .++..++++.++++ ++. +-..+|.. +++.++.+.+..-..|+.
T Consensus 107 G~e~F~~~~~~aGvdgvii-----pDLP---~ee~~~~~~~~~~~--gi~~I~lv~PtT--~~eri~~i~~~a~gFIY~v 174 (263)
T CHL00200 107 GINKFIKKISQAGVKGLII-----PDLP---YEESDYLISVCNLY--NIELILLIAPTS--SKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred CHHHHHHHHHHcCCeEEEe-----cCCC---HHHHHHHHHHHHHc--CCCEEEEECCCC--CHHHHHHHHHhCCCcEEEE
Confidence 3456677778899999998 4576 47788888888887 443 33445543 678888877775445543
Q ss_pred chhchHHHHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCC-HHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 213 NIETVKRLQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGES-DDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 213 ~ies~~~~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt-~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
+... .+|. ..-.++..+.++.+++ . +..-+.+|+|-+ .|++.+ +.+.|+|.+-++..+
T Consensus 175 S~~G-------vTG~~~~~~~~~~~~i~~ir~--~---t~~Pi~vGFGI~~~e~~~~----~~~~GADGvVVGSal 234 (263)
T CHL00200 175 STTG-------VTGLKTELDKKLKKLIETIKK--M---TNKPIILGFGISTSEQIKQ----IKGWNINGIVIGSAC 234 (263)
T ss_pred cCCC-------CCCCCccccHHHHHHHHHHHH--h---cCCCEEEECCcCCHHHHHH----HHhcCCCEEEECHHH
Confidence 2111 1111 1122345555556655 1 244577899655 666544 567899988886543
No 328
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=84.42 E-value=32 Score=31.25 Aligned_cols=140 Identities=16% Similarity=0.056 Sum_probs=80.0
Q ss_pred HHHHHhCCCcEEEEec-------cCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC----HHHHHHHHHcCCC
Q 018731 140 AKAIASWGVDYIVLTS-------VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETLVHSGLD 208 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltg-------g~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~----~e~l~~L~~aG~~ 208 (351)
++.+.+.|++-++++| |.+| ...-.++.+.+.++.|.+.. .+.+.+=-+.+..+ .+.++.+.++|+.
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD-~~~~~~~e~~~~~~~I~~~~-~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~ 99 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPD-GGLLTLDEVLAAVRRIARAV-DLPVIADADTGYGNALNVARTVRELEEAGAA 99 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCC-CCcCCHHHHHHHHHHHHhhc-cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 3445566999888876 2222 22223566666666666542 22332211212123 3557888889999
Q ss_pred eeecchhchHHHHhhhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeeeee-----CC-CCHHHHHHHHHHHHhCCCCEEe
Q 018731 209 VFAHNIETVKRLQRIVRD-PRAGYEQSLEVLKHAKLSKKGLITKSSIMLG-----LG-ESDDDLKEAMADLRSIDVDILT 281 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~-~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG-----lg-Et~e~~~~~l~~l~~lg~d~i~ 281 (351)
.|.+-=++.....-...+ .--+.++..+.|+.+++...++ ...-++.+ .| +..++..+-.+...+.|.|.+.
T Consensus 100 gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~ 178 (243)
T cd00377 100 GIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIF 178 (243)
T ss_pred EEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 987632222111000000 1237788888888887755553 33334444 44 6788888888888999999887
Q ss_pred e
Q 018731 282 L 282 (351)
Q Consensus 282 i 282 (351)
+
T Consensus 179 v 179 (243)
T cd00377 179 V 179 (243)
T ss_pred e
Confidence 7
No 329
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=84.39 E-value=28 Score=30.69 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=73.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+..++.+.++.+.+.|+..+.+..-+. ...+. .+.++.+++. .++.|.+ -++..+++.++.+.++|.+.+.
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~--~~~g~----~~~~~~i~~~-v~iPi~~--~~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPK--YFQGS----LEDLRAVREA-VSLPVLR--KDFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCcc--ccCCC----HHHHHHHHHh-cCCCEEE--CCeecCHHHHHHHHHcCCCEEE
Confidence 456788899999999999987754332 22222 2455555554 2445543 3455677899999999999998
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
++.... ..+...+.++.++. .|+.+ ++.. .+.+++ +.+.+.+++.+.+.
T Consensus 100 l~~~~~------------~~~~~~~~~~~~~~--~g~~~----~v~v-~~~~e~----~~~~~~g~~~i~~t 148 (217)
T cd00331 100 LIVAAL------------DDEQLKELYELARE--LGMEV----LVEV-HDEEEL----ERALALGAKIIGIN 148 (217)
T ss_pred EeeccC------------CHHHHHHHHHHHHH--cCCeE----EEEE-CCHHHH----HHHHHcCCCEEEEe
Confidence 753221 22344455555566 67764 3322 355553 44556788887763
No 330
>PLN02417 dihydrodipicolinate synthase
Probab=84.37 E-value=18 Score=33.48 Aligned_cols=14 Identities=0% Similarity=0.052 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHH
Q 018731 230 GYEQSLEVLKHAKL 243 (351)
Q Consensus 230 ~~~~~l~~i~~~~~ 243 (351)
+.++.++..+.+++
T Consensus 81 ~t~~~i~~a~~a~~ 94 (280)
T PLN02417 81 STREAIHATEQGFA 94 (280)
T ss_pred cHHHHHHHHHHHHH
Confidence 44455555555554
No 331
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=84.31 E-value=38 Score=32.05 Aligned_cols=137 Identities=11% Similarity=0.092 Sum_probs=81.6
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCC----------CCCCcHHHHHHHHHHHHHhCC-CcEEEEe-ecCCCC---C
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDD----------IPDGGSGHFARTVKAMKKQKP-DIMVECL-TSDFRG---D 195 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~----------l~~~~~~~~~~li~~ik~~~p-~i~i~~~-~~~~~~---~ 195 (351)
.++++..+.++.+.+.|++.|-|-.|.|.. |- ...+.+.++++.+++..+ ++.|.+= ..+... .
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll-~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~ 150 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLL-KDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERK 150 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhh-cCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHH
Confidence 356777777777788899988776555421 11 125678899999998754 3443331 122211 2
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHH
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLR 273 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~ 273 (351)
.+.++.+.++|++.+.+.--+..+. ++++..++ +.++.+++. .++. ++|- -.|.++..+.+ .
T Consensus 151 ~~~a~~l~~~Gvd~i~Vh~Rt~~~~---y~g~~~~~----~~i~~ik~~-~~iP-----Vi~nGdI~t~~da~~~l---~ 214 (312)
T PRK10550 151 FEIADAVQQAGATELVVHGRTKEDG---YRAEHINW----QAIGEIRQR-LTIP-----VIANGEIWDWQSAQQCM---A 214 (312)
T ss_pred HHHHHHHHhcCCCEEEECCCCCccC---CCCCcccH----HHHHHHHhh-cCCc-----EEEeCCcCCHHHHHHHH---h
Confidence 4677889999999998865443222 22122244 444455541 2443 2333 25667766655 4
Q ss_pred hCCCCEEeeec
Q 018731 274 SIDVDILTLGQ 284 (351)
Q Consensus 274 ~lg~d~i~i~~ 284 (351)
..|+|.|.++.
T Consensus 215 ~~g~DgVmiGR 225 (312)
T PRK10550 215 ITGCDAVMIGR 225 (312)
T ss_pred ccCCCEEEEcH
Confidence 68999999874
No 332
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.30 E-value=7.3 Score=35.39 Aligned_cols=80 Identities=21% Similarity=0.217 Sum_probs=52.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++++.+.++.+.+.|++.|++..-..... .+.+.++++.+++..+++.+.+- +++.-+--.-.-...++|++.
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~----P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~ 218 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTVGLAT----PEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADR 218 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhcCCcC----HHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCE
Confidence 4577888889988999999998843222222 37899999999998776655532 333222333334445789999
Q ss_pred eecch
Q 018731 210 FAHNI 214 (351)
Q Consensus 210 i~~~i 214 (351)
|-.++
T Consensus 219 id~s~ 223 (265)
T cd03174 219 VDGSV 223 (265)
T ss_pred EEecc
Confidence 86543
No 333
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=84.29 E-value=21 Score=32.07 Aligned_cols=147 Identities=18% Similarity=0.240 Sum_probs=94.5
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCC-CCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchh
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDI-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l-~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ie 215 (351)
.+.++.+.+.|.+.|--|+-..+.. |. +.+-.++++.+++ +|++..-+++|+. .-++....+|...|.+--.
T Consensus 43 veLI~~Lse~Gl~~vEtTSFVSpKWVPQ--l~D~~ev~k~i~~-~~Gv~yPVLtPNl----kGf~~AvaaGa~EvavFga 115 (316)
T KOG2368|consen 43 VELIDRLSECGLQVVETTSFVSPKWVPQ--LADHNEVMKGIRK-FPGVSYPVLTPNL----KGFEAAVAAGAEEVAVFGA 115 (316)
T ss_pred HHHHHHHHHcCCceeeeecccCcccccc--ccchHHHHHhhhc-CCCccccccCcch----hhHHHHHhcCceeEEeeeh
Confidence 6788888999999886655432211 11 2344577777776 6888877778753 5667778899998875211
Q ss_pred chHHHH--hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eeeeeC-C---CCHHHHHHHHHHHHhCCCCEEeeeccc-
Q 018731 216 TVKRLQ--RIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SIMLGL-G---ESDDDLKEAMADLRSIDVDILTLGQYL- 286 (351)
Q Consensus 216 s~~~~~--~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~IvGl-g---Et~e~~~~~l~~l~~lg~d~i~i~~~l- 286 (351)
..+.+. .+.+.-..+.+++...++.+++ .++++.. ...+|- - -+++-+.+..+.+.++|...|+++..+
T Consensus 116 ASe~FslkNiNctiees~~rf~~v~kaA~~--~ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIG 193 (316)
T KOG2368|consen 116 ASEAFSLKNINCTIEESLKRFMEVLKAAQE--HNIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIG 193 (316)
T ss_pred hhhhhhhccCCccHHHHHHHHHHHHHHHHH--cCCccceEEEEEecCCccCCcCHHHHHHHHHHHHhCCcEEEecccccc
Confidence 122221 2222001255566677788888 8998755 446776 2 467888899999999999888876554
Q ss_pred CCCCCc
Q 018731 287 QPTPLH 292 (351)
Q Consensus 287 ~PTp~~ 292 (351)
.-||..
T Consensus 194 vGTpgt 199 (316)
T KOG2368|consen 194 VGTPGT 199 (316)
T ss_pred cCCchh
Confidence 125554
No 334
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=84.10 E-value=7 Score=36.23 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=51.3
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEecc-CCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCC-CCC-HHHHHHHHHc
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVLTSV-DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDF-RGD-LRAVETLVHS 205 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~ltgg-~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~-~~~-~e~l~~L~~a 205 (351)
.+.+++|+.+.+.+..+.|..-+.+=.= +.+--+....+.+.++++.|++..|++-+...+... ..+ ++.++.+...
T Consensus 21 lP~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~ 100 (272)
T PF05853_consen 21 LPITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAW 100 (272)
T ss_dssp S--SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhc
Confidence 4467899999999999999886655211 101011123689999999999998998777644331 223 4455555444
Q ss_pred CCCeeecch
Q 018731 206 GLDVFAHNI 214 (351)
Q Consensus 206 G~~~i~~~i 214 (351)
..+..+++.
T Consensus 101 ~pd~asl~~ 109 (272)
T PF05853_consen 101 KPDMASLNP 109 (272)
T ss_dssp --SEEEEE-
T ss_pred CCCeEEecc
Confidence 677776644
No 335
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.93 E-value=6.8 Score=35.62 Aligned_cols=129 Identities=12% Similarity=0.109 Sum_probs=77.7
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+.+.|++++++..-+.. .. +...-.++++.|.+.. ..+. ..++..+.+.++.+.++|++++.+
T Consensus 29 ~~dP~~~A~~~~~~ga~~lhivDLd~a-~~--g~~~n~~~i~~i~~~~--~~v~--vGGGIrs~e~~~~~l~~Ga~rvvi 101 (241)
T PRK14114 29 EKDPAELVEKLIEEGFTLIHVVDLSKA-IE--NSVENLPVLEKLSEFA--EHIQ--IGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCc-cc--CCcchHHHHHHHHhhc--CcEE--EecCCCCHHHHHHHHHCCCCEEEE
Confidence 357888899999999999998655431 11 1234567777777653 2333 255666899999999999999988
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee----e--eC-CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM----L--GL-GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I----v--Gl-gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|-++++. . +.++.+...- .-+-++.++- + |- ..+.-+..+.++.+.++|+..+-+.
T Consensus 102 gT~a~~~-----------p-~~l~~~~~~~---~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~t 164 (241)
T PRK14114 102 SSKVLED-----------P-SFLKFLKEID---VEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHT 164 (241)
T ss_pred CchhhCC-----------H-HHHHHHHHhC---CCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEE
Confidence 7655432 1 0111111100 1122333321 1 21 2344556777888889998876663
No 336
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=83.83 E-value=30 Score=31.08 Aligned_cols=124 Identities=21% Similarity=0.236 Sum_probs=68.6
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC-HHHHHHHHHcCCCeeecch
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~-~e~l~~L~~aG~~~i~~~i 214 (351)
+++-++.+.+.|++.|++..-+.+.--| .+.+.++++.-... +++++-. =|...| .+.++.+.+.|+.+|--+
T Consensus 75 M~~DI~~~~~lG~~GVV~G~lt~dg~iD--~~~le~Li~aA~gL--~vTFHrA-FD~~~d~~~ale~li~~Gv~RILTs- 148 (241)
T COG3142 75 MLEDIRLARELGVQGVVLGALTADGNID--MPRLEKLIEAAGGL--GVTFHRA-FDECPDPLEALEQLIELGVERILTS- 148 (241)
T ss_pred HHHHHHHHHHcCCCcEEEeeecCCCccC--HHHHHHHHHHccCC--ceeeehh-hhhcCCHHHHHHHHHHCCCcEEecC-
Confidence 3566677788999999986554332222 45566655543322 3444310 011113 489999999999998421
Q ss_pred hchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 215 es~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+...+..+-+..++.+.+...| ...+|.|-|-+.+.+.+.. ..+|+..++.
T Consensus 149 -----------Gg~~sa~eg~~~l~~li~~a~g---ri~Im~GaGV~~~N~~~l~---~~tg~~e~H~ 199 (241)
T COG3142 149 -----------GGKASALEGLDLLKRLIEQAKG---RIIIMAGAGVRAENIAELV---LLTGVTEVHG 199 (241)
T ss_pred -----------CCcCchhhhHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHH---HhcCchhhhh
Confidence 1112333333333333321112 3457888888888776543 4566665555
No 337
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=83.72 E-value=8.4 Score=35.48 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=51.8
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEe-ecCCCCCHHHHHHHHHcCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECL-TSDFRGDLRAVETLVHSGL 207 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~--i~i~~~-~~~~~~~~e~l~~L~~aG~ 207 (351)
.+++.+.+.++.+.+.|+..|.|..-..... .+.+.++++.+++.+++ +.+..- +++.-+.-.-.-...++|+
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~ 215 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTINIPDTVGYLT----PEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGA 215 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCC----HHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCC
Confidence 4577888899999999999999843222212 37899999999998775 555432 3332122222333447899
Q ss_pred Ceeecch
Q 018731 208 DVFAHNI 214 (351)
Q Consensus 208 ~~i~~~i 214 (351)
+.|-.++
T Consensus 216 ~~iD~s~ 222 (268)
T cd07940 216 RQVECTI 222 (268)
T ss_pred CEEEEEe
Confidence 9985443
No 338
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=83.69 E-value=24 Score=33.72 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=52.4
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEe-ecCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECL-TSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~-~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++++.+.++.+.+.|+..|++..-..-.+| +.+.++++.+++..+ ++.+..- +++.-+.-.-.-...++|++
T Consensus 140 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P----~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~ 215 (333)
T TIGR03217 140 TPPEKLAEQAKLMESYGADCVYIVDSAGAMLP----DDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGAT 215 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEccCCCCCCH----HHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCC
Confidence 45688899999999999999999543332233 789999999998753 4544431 33322233333334579999
Q ss_pred eeecch
Q 018731 209 VFAHNI 214 (351)
Q Consensus 209 ~i~~~i 214 (351)
+|-.++
T Consensus 216 ~iD~Sl 221 (333)
T TIGR03217 216 RIDASL 221 (333)
T ss_pred EEEeec
Confidence 985443
No 339
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=83.52 E-value=10 Score=34.89 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhCCCcEEE-EeecC----------C---CCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHH
Q 018731 168 HFARTVKAMKKQKPDIMVE-CLTSD----------F---RGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQ 233 (351)
Q Consensus 168 ~~~~li~~ik~~~p~i~i~-~~~~~----------~---~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~ 233 (351)
.+..+-+.+++.+|+..|. ++|+. + ..-.+.|..|++.|++.|.+ + .++ ++ |+..|++
T Consensus 19 ti~~ie~~~~~~fp~~~V~~AfTS~~I~~kl~~~~g~~i~~~~eaL~~L~~~G~~~V~V--Q---plh-ii--pG~Ey~~ 90 (262)
T PF06180_consen 19 TIDAIEKAVREAFPDYDVRRAFTSRIIRKKLAERDGIKIDSPEEALAKLADEGYTEVVV--Q---PLH-II--PGEEYEK 90 (262)
T ss_dssp HHHHHHHHHHHCSTTSEEEEEES-HHHHHHHHHCHT-----HHHHHHHHHHCT--EEEE--E---E---SC--SSHHHHH
T ss_pred HHHHHHHHHHHHCCCCcEEEEchHHHHHHHHHhcCCCCcCCHHHHHHHHHHCCCCEEEE--e---ecc-ee--CcHhHHH
Confidence 6777888888889998765 44532 1 11247888899999888754 1 111 22 4667777
Q ss_pred HHHHHHHHHHhCCCCeEEEeeee--eCCCCHHHHHHHHHHHHh
Q 018731 234 SLEVLKHAKLSKKGLITKSSIML--GLGESDDDLKEAMADLRS 274 (351)
Q Consensus 234 ~l~~i~~~~~~~~Gi~v~~~~Iv--GlgEt~e~~~~~l~~l~~ 274 (351)
..+.++..+..|..+.++.-++. |..++.+|+.+.++.|.+
T Consensus 91 l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~ 133 (262)
T PF06180_consen 91 LRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAE 133 (262)
T ss_dssp HHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHC
T ss_pred HHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHH
Confidence 77776655432222223332222 334567787777777765
No 340
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=83.44 E-value=37 Score=33.46 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=78.6
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCC--------CCcHHHHHHHHHHHHHhC-CCcEEEEeecCCCCCHHHHHHHH
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIP--------DGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLV 203 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~--------~~~~~~~~~li~~ik~~~-p~i~i~~~~~~~~~~~e~l~~L~ 203 (351)
++++.+.++.+.+.|++.|-|--+-|.... ....+.+.++++.+++.. ..+.+.+ +++.....+.++.+.
T Consensus 112 ~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl-~p~~~~~~~~a~~~~ 190 (420)
T PRK08318 112 EEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKL-TPNITDIREPARAAK 190 (420)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEc-CCCcccHHHHHHHHH
Confidence 577778888887888887766333321010 023578889999998753 1244444 454432357888899
Q ss_pred HcCCCeeec----------chhchH--H-HH-h----hhcCCCCCHHHHHHHHHHHHHhCC--CCeEEEeeeeeC-C-CC
Q 018731 204 HSGLDVFAH----------NIETVK--R-LQ-R----IVRDPRAGYEQSLEVLKHAKLSKK--GLITKSSIMLGL-G-ES 261 (351)
Q Consensus 204 ~aG~~~i~~----------~ies~~--~-~~-~----~~r~~~~~~~~~l~~i~~~~~~~~--Gi~v~~~~IvGl-g-Et 261 (351)
++|++.|.+ .+++.. . ++ + .+.++ .-..-.++.+..+++... ++. |+|. | .|
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~-a~~p~~l~~v~~~~~~~~~~~ip-----Iig~GGI~s 264 (420)
T PRK08318 191 RGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGP-AVKPIALNMVAEIARDPETRGLP-----ISGIGGIET 264 (420)
T ss_pred HCCCCEEEEecccCccccccccccCCCceecCCCCcccccch-hhhHHHHHHHHHHHhccccCCCC-----EEeecCcCC
Confidence 999999872 223211 1 11 1 11110 112234666666665211 333 4555 2 56
Q ss_pred HHHHHHHHHHHHhCCCCEEeee
Q 018731 262 DDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 262 ~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.+|..+.+ . .|.+.|.++
T Consensus 265 ~~da~e~i---~-aGA~~Vqi~ 282 (420)
T PRK08318 265 WRDAAEFI---L-LGAGTVQVC 282 (420)
T ss_pred HHHHHHHH---H-hCCChheee
Confidence 66665554 3 888887775
No 341
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=83.35 E-value=10 Score=38.21 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=53.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEee-cCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLT-SDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~-~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++...+.++.+.+.|++.|.|..-..- +. ...+.++++.+++..| ++.|++-+ ++.-+.-...-.-.++|++
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDtaGl-l~---P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad 227 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDMAAL-LK---PQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVD 227 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccC-CC---HHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCC
Confidence 36778889999999999999999433221 22 4789999999999875 65555422 2221233444445789999
Q ss_pred eeecch
Q 018731 209 VFAHNI 214 (351)
Q Consensus 209 ~i~~~i 214 (351)
.|-.++
T Consensus 228 ~vDtai 233 (499)
T PRK12330 228 VVDTAI 233 (499)
T ss_pred EEEeec
Confidence 986433
No 342
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=83.19 E-value=12 Score=33.92 Aligned_cols=87 Identities=8% Similarity=0.015 Sum_probs=64.7
Q ss_pred CHHHHHHHHHcCCCeeecchhchHHHHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHH
Q 018731 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLR 273 (351)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~ 273 (351)
|.-.+..+.++|++.+.++=-.....+ .+.+. ..++++.+..++.+.+..+...+.+|+-.|+|++.++..++.+.+.
T Consensus 21 D~~sA~i~e~aG~dai~v~~s~~a~~~-G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~ 99 (240)
T cd06556 21 DYSMAKQFADAGLNVMLVGDSQGMTVA-GYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFM 99 (240)
T ss_pred CHHHHHHHHHcCCCEEEEChHHHHHhc-CCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHH
Confidence 777888899999999987522221111 11121 3589999999998886333457899999999888889999999888
Q ss_pred hCCCCEEee
Q 018731 274 SIDVDILTL 282 (351)
Q Consensus 274 ~lg~d~i~i 282 (351)
+.|++-+.+
T Consensus 100 ~aGa~gv~i 108 (240)
T cd06556 100 RAGAAGVKI 108 (240)
T ss_pred HcCCcEEEE
Confidence 899988777
No 343
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=83.07 E-value=9.8 Score=34.83 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=59.8
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++.+.+.++.+.+.|++.|.|..-..... .+.+.++++.+++..| +.+.+- +++.-+.....-...++|++.
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~ 210 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRFADTVGILD----PFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATH 210 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC----HHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 4578888999999999999999843222222 3789999999998765 444431 333222333333345799999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHH
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKH 240 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~ 240 (351)
|-.++-.+= +.. .....++.+..++.
T Consensus 211 vd~s~~G~G---~~a--GN~~tE~lv~~l~~ 236 (259)
T cd07939 211 VSVTVNGLG---ERA--GNAALEEVVMALKH 236 (259)
T ss_pred EEEeccccc---ccc--cCcCHHHHHHHHHH
Confidence 865433321 110 02356666665543
No 344
>PLN02591 tryptophan synthase
Probab=83.02 E-value=17 Score=33.25 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEee
Q 018731 261 SDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 261 t~e~~~~~l~~l~~lg~d~i~i 282 (351)
..|+..+....+++.|++.|.+
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEE
Confidence 3456666666666667666554
No 345
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=82.93 E-value=18 Score=32.54 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHH-hhhcCCCCCHHHHHHHHHHHHHh
Q 018731 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLS 244 (351)
Q Consensus 166 ~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~-~~~r~~~~~~~~~l~~i~~~~~~ 244 (351)
.+.+.++++.+++. ++.+..+... +.+.++.-++.|.++|-+.-..+-..+ ..-+ ...++...++.+.+++
T Consensus 109 ~~~l~~~i~~l~~~--gI~VSLFiDP---d~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~--~~el~~i~~aa~~a~~- 180 (234)
T cd00003 109 AEKLKPIIERLKDA--GIRVSLFIDP---DPEQIEAAKEVGADRVELHTGPYANAYDKAER--EAELERIAKAAKLARE- 180 (234)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEeCC---CHHHHHHHHHhCcCEEEEechhhhcCCCchhH--HHHHHHHHHHHHHHHH-
Confidence 57888899999886 7777765421 679999999999999976543322211 1000 1246777788888888
Q ss_pred CCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 245 KKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 245 ~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
.|+.|++ |+|-|.+.+..... + -++..++++..+
T Consensus 181 -~GL~VnA----GHgLny~Nv~~i~~-i--p~i~ElnIGHsi 214 (234)
T cd00003 181 -LGLGVNA----GHGLNYENVKPIAK-I--PGIAELNIGHAI 214 (234)
T ss_pred -cCCEEec----CCCCCHHHHHHHHh-C--CCCeEEccCHHH
Confidence 8888664 57777777655443 2 235566665443
No 346
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=82.67 E-value=33 Score=30.14 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=48.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
++....+.++.+.+.|++.|.|.-.+....++ .....+.++.+++..+ .+.+.+.+.+ ..+.++.+.++|++.+
T Consensus 14 ~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~v~l~v~d---~~~~i~~~~~~g~d~v 88 (220)
T PRK05581 14 DFARLGEEVKAVEAAGADWIHVDVMDGHFVPN--LTIGPPVVEAIRKVTKLPLDVHLMVEN---PDRYVPDFAKAGADII 88 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCccCCcCCC--cCcCHHHHHHHHhcCCCcEEEEeeeCC---HHHHHHHHHHcCCCEE
Confidence 44566778888899999999884322221121 1234567778876543 2345554543 3467788889999997
Q ss_pred ecc
Q 018731 211 AHN 213 (351)
Q Consensus 211 ~~~ 213 (351)
.+.
T Consensus 89 ~vh 91 (220)
T PRK05581 89 TFH 91 (220)
T ss_pred EEe
Confidence 654
No 347
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=82.66 E-value=32 Score=29.94 Aligned_cols=98 Identities=21% Similarity=0.278 Sum_probs=59.6
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcE--EEEeecCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM--VECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~--i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++...+.++.+.+.|++.|.|.-.+.+..++ ...-.+.++.+++. ++.. +.+.+.+ ..+.++.++++|.|
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~--~~~~~~~v~~i~~~-~~~~v~v~lm~~~---~~~~~~~~~~~gad 81 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVPN--LTFGPPVLEALRKY-TDLPIDVHLMVEN---PDRYIEDFAEAGAD 81 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC--cccCHHHHHHHHhc-CCCcEEEEeeeCC---HHHHHHHHHHcCCC
Confidence 345667788888899999999884222222222 22345777788764 3333 4444432 45789999999999
Q ss_pred eeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 018731 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (351)
.+.+..+. .++..+.++.+++ .|+.+
T Consensus 82 gv~vh~~~--------------~~~~~~~~~~~~~--~g~~~ 107 (210)
T TIGR01163 82 IITVHPEA--------------SEHIHRLLQLIKD--LGAKA 107 (210)
T ss_pred EEEEccCC--------------chhHHHHHHHHHH--cCCcE
Confidence 97653211 1233455566776 67653
No 348
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=82.58 E-value=4 Score=37.64 Aligned_cols=172 Identities=16% Similarity=0.211 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCc-EEEEeecCCCC-----CHHHHHHHHHcCC
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI-MVECLTSDFRG-----DLRAVETLVHSGL 207 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i-~i~~~~~~~~~-----~~e~l~~L~~aG~ 207 (351)
..+.+.++.+.+.|+++|++++-.- ++. ..+.++.+.+++...++ .+.+-.|.... +.+-++.+.++=.
T Consensus 58 ~~~~eaL~~L~~~G~~~V~VQplhi--ipG---~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~ 132 (262)
T PF06180_consen 58 DSPEEALAKLADEGYTEVVVQPLHI--IPG---EEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALA 132 (262)
T ss_dssp --HHHHHHHHHHCT--EEEEEE--S--CSS---HHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCEEEEeecce--eCc---HhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHH
Confidence 4455666777899999999987653 554 45556666666543222 45554454321 3555554444311
Q ss_pred CeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 208 DVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 208 ~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
+.+.-. .-++ +--+-.|..+........++...+. .|. -++.+|.=|..-++.+.+..+++.|+..+.+.+|+
T Consensus 133 ~~~~~~--~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~-~~~---~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~PlM 206 (262)
T PF06180_consen 133 EEFPKK--RKDEAVVLMGHGTPHPANAAYSALQAMLKK-HGY---PNVFVGTVEGYPSLEDVIARLKKKGIKKVHLIPLM 206 (262)
T ss_dssp CCS-TT---TTEEEEEEE---SCHHHHHHHHHHHHHHC-CT----TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEEEES
T ss_pred Hhcccc--CCCCEEEEEeCCCCCCccHHHHHHHHHHHh-CCC---CeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEecc
Confidence 111100 0001 0000012233444455555555431 332 23345542323347777888888999998887665
Q ss_pred CCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 287 QPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 287 ~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
.-...| ....+.-++-+-|+..++..||.-
T Consensus 207 lVAGdH--a~nDmaGde~dSWks~L~~~G~~v 236 (262)
T PF06180_consen 207 LVAGDH--AKNDMAGDEEDSWKSRLEAAGFEV 236 (262)
T ss_dssp SS--HH--HHCCCCSSSTTSHHHHHHHTT-EE
T ss_pred cccchh--hhhhhcCCCcchHHHHHHHCCCEE
Confidence 222222 112222223356888999999963
No 349
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=82.51 E-value=16 Score=33.47 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=12.4
Q ss_pred EEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 152 VLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 152 ~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
+++.|+|+ .+...++++.+.+.
T Consensus 15 y~~aG~P~------~~~~~~~~~~l~~~ 36 (256)
T TIGR00262 15 FVTAGDPT------LETSLEIIKTLIEA 36 (256)
T ss_pred EEeCCCCC------HHHHHHHHHHHHHc
Confidence 56666652 24566666666554
No 350
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=82.38 E-value=34 Score=30.04 Aligned_cols=151 Identities=14% Similarity=0.107 Sum_probs=92.3
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHH-HHHHhCCCcEEEEe--ecCCCCC-H---HHHHHHH
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVK-AMKKQKPDIMVECL--TSDFRGD-L---RAVETLV 203 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~-~ik~~~p~i~i~~~--~~~~~~~-~---e~l~~L~ 203 (351)
.+.+++.+.++.+.+.|+..++++- .+.+.++ .++. .++.+.+. .|.+..+ + ..++...
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p------------~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~ 79 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNP------------CFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAI 79 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcH------------HHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHH
Confidence 4568899999998888999988731 2333322 2222 23444432 2322212 1 3466777
Q ss_pred HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+.|.|.+-+.+.-. ... ...++..++-+..+++...|+.+.. |+.. .-+.+++....+...++|+|++-.
T Consensus 80 ~~GAdevdvv~~~g-----~~~--~~~~~~~~~ei~~v~~~~~g~~lkv--I~e~~~l~~~~i~~a~ria~e~GaD~IKT 150 (203)
T cd00959 80 ADGADEIDMVINIG-----ALK--SGDYEAVYEEIAAVVEACGGAPLKV--ILETGLLTDEEIIKACEIAIEAGADFIKT 150 (203)
T ss_pred HcCCCEEEEeecHH-----HHh--CCCHHHHHHHHHHHHHhcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEc
Confidence 78999885533211 121 4567777777777777555777666 5555 356788999999999999998877
Q ss_pred ecccCCCCCcccccCCCCHHHHHHHHHHHH
Q 018731 283 GQYLQPTPLHLTVKEYVTPEKFDFWKAYGE 312 (351)
Q Consensus 283 ~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~ 312 (351)
+ |.+. ....+++....+++...
T Consensus 151 s-----TG~~---~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 151 S-----TGFG---PGGATVEDVKLMKEAVG 172 (203)
T ss_pred C-----CCCC---CCCCCHHHHHHHHHHhC
Confidence 3 2221 12355666666665554
No 351
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=82.19 E-value=41 Score=31.98 Aligned_cols=137 Identities=23% Similarity=0.214 Sum_probs=81.5
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCC----------CCCCCCcHHHHHHHHHHHHHhCCCc--EEEEeec--CC-CCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDR----------DDIPDGGSGHFARTVKAMKKQKPDI--MVECLTS--DF-RGD 195 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~----------~~l~~~~~~~~~~li~~ik~~~p~i--~i~~~~~--~~-~~~ 195 (351)
.+|+...+.++.+.+.|+..|-|--|-| ..|- .+.+.+.++++++++..+++ ++.+-.. +. ...
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll-~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~ 154 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALL-KNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILA 154 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhc-CCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccH
Confidence 4566666777777888988887754443 1121 23688999999999876433 4433111 11 123
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCC--CHHHHHHHHHHHH
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGE--SDDDLKEAMADLR 273 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgE--t~e~~~~~l~~l~ 273 (351)
.+.++.+.++|++.+.+.--|....+. + ..+| +.|..+++..+.+. ++|-|+ |.++..+.+ .
T Consensus 155 ~~ia~~~~~~g~~~ltVHgRtr~~~y~---~-~ad~----~~I~~vk~~~~~ip-----vi~NGdI~s~~~a~~~l---~ 218 (323)
T COG0042 155 LEIARILEDAGADALTVHGRTRAQGYL---G-PADW----DYIKELKEAVPSIP-----VIANGDIKSLEDAKEML---E 218 (323)
T ss_pred HHHHHHHHhcCCCEEEEecccHHhcCC---C-ccCH----HHHHHHHHhCCCCe-----EEeCCCcCCHHHHHHHH---H
Confidence 468899999999999876555433321 1 2344 44444554222333 344443 666665554 4
Q ss_pred hCCCCEEeeec
Q 018731 274 SIDVDILTLGQ 284 (351)
Q Consensus 274 ~lg~d~i~i~~ 284 (351)
..|+|-+.++.
T Consensus 219 ~tg~DgVMigR 229 (323)
T COG0042 219 YTGADGVMIGR 229 (323)
T ss_pred hhCCCEEEEcH
Confidence 67899888763
No 352
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=82.14 E-value=16 Score=34.23 Aligned_cols=110 Identities=18% Similarity=0.107 Sum_probs=63.0
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEeecCCC---CC-H---HHHHHH
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFR---GD-L---RAVETL 202 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~~~~~---~~-~---e~l~~L 202 (351)
.+..++...+..+.+.|++.|...+|+++...+....+-.++++.|++.. -.+.+.++ |.+. .+ + +.++.=
T Consensus 94 ~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~y-Peghp~~~~~~~dl~~Lk~K 172 (296)
T PRK09432 94 ATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAY-PEVHPEAKSAQADLINLKRK 172 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeC-CCCCCCCCCHHHHHHHHHHH
Confidence 35678888888889999999988888865333222233447777777641 12333332 2211 11 2 234444
Q ss_pred HHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 203 VHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 203 ~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
.++|.+.+ ..+ .-++.+...+.++.+++ .|+. .-++.|+
T Consensus 173 ~~aGA~~~------iTQ-------~~Fd~~~~~~f~~~~~~--~Gi~--vPIi~GI 211 (296)
T PRK09432 173 VDAGANRA------ITQ-------FFFDVESYLRFRDRCVS--AGID--VEIVPGI 211 (296)
T ss_pred HHcCCCee------ecc-------cccchHHHHHHHHHHHH--cCCC--CCEEeec
Confidence 46777643 111 24566667777777777 7753 3456666
No 353
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=82.13 E-value=13 Score=35.28 Aligned_cols=133 Identities=24% Similarity=0.250 Sum_probs=77.5
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchh
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ie 215 (351)
..+.++.+.+.|++.|.+...... .+...++++.+++..|++.|-+ +...+.+.+..+.++|+|.|.+++-
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~------~~~~~~~i~~ik~~~p~v~Vi~---G~v~t~~~A~~l~~aGaD~I~vg~g 165 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGH------SVYVIEMIKFIKKKYPNVDVIA---GNVVTAEAARDLIDAGADGVKVGIG 165 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC------cHHHHHHHHHHHHHCCCceEEE---CCCCCHHHHHHHHhcCCCEEEECCC
Confidence 345667777889998887543321 1567889999999877655543 2234889999999999999876432
Q ss_pred chHH-HHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 216 TVKR-LQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 216 s~~~-~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
.... ..+...+. ..++.-..+..+.+.+ .++.+-++ |=-.+..++.+.+ .+|.+.+.++..+
T Consensus 166 ~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~--~~vpVIA~---GGI~~~~di~kAl----a~GA~~VmiGt~f 229 (325)
T cd00381 166 PGSICTTRIVTGVGVPQATAVADVAAAARD--YGVPVIAD---GGIRTSGDIVKAL----AAGADAVMLGSLL 229 (325)
T ss_pred CCcCcccceeCCCCCCHHHHHHHHHHHHhh--cCCcEEec---CCCCCHHHHHHHH----HcCCCEEEecchh
Confidence 1111 11111101 1244444444444444 45553221 1123456666554 4899988886544
No 354
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=82.11 E-value=27 Score=31.23 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=60.7
Q ss_pred eeeEEEEeeccCCCCCCcCcccCC-CCCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 101 IATATIMLLGDTCTRGCRFCAVKT-SRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 101 ~~~~~~i~~s~gC~~~C~FC~~~~-~~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
+...+++.+..+|. +.. +......+++++..-+.....+|.+-|++- +... ..+ .++++.+++.
T Consensus 108 ~i~~gYiv~~~~~~-------v~~v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe-~SG~-~~~------~e~I~~v~~~ 172 (219)
T cd02812 108 LIPEGYLVLNPDST-------VARVTGAKTDLKPEDAAAYALAAEYLGMPIVYLE-YSGA-YGP------PEVVRAVKKV 172 (219)
T ss_pred ccceEEEEECCCCc-------eeeeeccCcCCCHHHHHHHHHHHHHcCCeEEEeC-CCCC-cCC------HHHHHHHHHh
Confidence 34567777766663 222 221224567788888877788897777775 3221 121 4556666665
Q ss_pred CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
..++.+.+ .++..+.+.++.+.++|.|.|-+|
T Consensus 173 ~~~~pl~v--GGGIrs~e~a~~l~~aGAD~VVVG 204 (219)
T cd02812 173 LGDTPLIV--GGGIRSGEQAKEMAEAGADTIVVG 204 (219)
T ss_pred cCCCCEEE--eCCCCCHHHHHHHHHcCCCEEEEC
Confidence 32444433 556679999999999999999775
No 355
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=82.07 E-value=6.9 Score=34.54 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEee-cCCCCC-HHHHHHHHHcCCCeeec
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT-SDFRGD-LRAVETLVHSGLDVFAH 212 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~-~~~~~~-~e~l~~L~~aG~~~i~~ 212 (351)
.+.+.++.+.+.|++.++|.--+++.-- +.+...++++..+ ++.+..-. -|...+ .+.++.|.+.|+++|.=
T Consensus 73 ~M~~dI~~~~~~GadG~VfG~L~~dg~i--D~~~~~~Li~~a~----~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLT 146 (201)
T PF03932_consen 73 IMKEDIRMLRELGADGFVFGALTEDGEI--DEEALEELIEAAG----GMPVTFHRAFDEVPDPEEALEQLIELGFDRVLT 146 (201)
T ss_dssp HHHHHHHHHHHTT-SEEEE--BETTSSB---HHHHHHHHHHHT----TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHHHcCCCeeEEEeECCCCCc--CHHHHHHHHHhcC----CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEEC
Confidence 4466777788899999998543332112 2456666666654 34443211 122223 57899999999999832
Q ss_pred --chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 213 --NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 213 --~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+..+. ....+...+.++.++ ..| .+|.|=|=+.+.+.+.++ +.|+..++.
T Consensus 147 SGg~~~a----------~~g~~~L~~lv~~a~---~~i----~Im~GgGv~~~nv~~l~~---~tg~~~~H~ 198 (201)
T PF03932_consen 147 SGGAPTA----------LEGIENLKELVEQAK---GRI----EIMPGGGVRAENVPELVE---ETGVREIHG 198 (201)
T ss_dssp STTSSST----------TTCHHHHHHHHHHHT---TSS----EEEEESS--TTTHHHHHH---HHT-SEEEE
T ss_pred CCCCCCH----------HHHHHHHHHHHHHcC---CCc----EEEecCCCCHHHHHHHHH---hhCCeEEee
Confidence 21110 123333333333322 334 477776666655554433 477777766
No 356
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=82.01 E-value=30 Score=31.08 Aligned_cols=95 Identities=14% Similarity=0.191 Sum_probs=56.3
Q ss_pred eEEEEeeccCCCCCCcCcccCC-CC-CCCCCCchhHHHHHHHHHh-CCCcEEEEecc--CCCCCCCCcHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKT-SR-NPAPPDPMEPENTAKAIAS-WGVDYIVLTSV--DRDDIPDGGSGHFARTVKAMK 177 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~-~~-~~~~~~~eei~~~~~~~~~-~G~~~I~ltgg--~~~~l~~~~~~~~~~li~~ik 177 (351)
..+++.+..+|. +.. ++ .+.+.+.+++........+ +|.+-++|-.| -+...+ .++++.++
T Consensus 109 p~gYiv~~~~~~-------v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~-------~e~i~~v~ 174 (223)
T TIGR01768 109 PEGYIIVNPGGA-------AARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVP-------PELVAEVK 174 (223)
T ss_pred ceEEEEECCCcc-------eeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcC-------HHHHHHHH
Confidence 456666666652 222 12 1233455665544443333 69999998532 221111 35566666
Q ss_pred HhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 178 KQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 178 ~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+...++.+.. .++..+.+.++.+.++|.|+|.+|
T Consensus 175 ~~~~~~pl~v--GGGIrs~e~a~~l~~aGAD~VVVG 208 (223)
T TIGR01768 175 KVLDKARLFV--GGGIRSVEKAREMAEAGADTIVTG 208 (223)
T ss_pred HHcCCCCEEE--ecCCCCHHHHHHHHHcCCCEEEEC
Confidence 6543445443 556679999999999999999775
No 357
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=81.91 E-value=23 Score=32.05 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEeeecccCC-CCCcccccCCCCHHHHHHHHHHHH-hcCcceecc
Q 018731 261 SDDDLKEAMADLRSIDVDILTLGQYLQP-TPLHLTVKEYVTPEKFDFWKAYGE-SIGFRYVAS 321 (351)
Q Consensus 261 t~e~~~~~l~~l~~lg~d~i~i~~~l~P-Tp~~~~~~~~v~~~e~~~~~~~~~-~~G~~~~~~ 321 (351)
..|+..+.++.+++.|++.+.+ +.| |+ .++++.++. ..||.++.+
T Consensus 114 ~~ee~~~~~~~~~~~g~~~i~~---i~P~T~-------------~~~i~~i~~~~~~~vy~~s 160 (242)
T cd04724 114 PPEEAEEFREAAKEYGLDLIFL---VAPTTP-------------DERIKKIAELASGFIYYVS 160 (242)
T ss_pred CHHHHHHHHHHHHHcCCcEEEE---eCCCCC-------------HHHHHHHHhhCCCCEEEEe
Confidence 3456667777777777765554 134 22 223444454 678887654
No 358
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=81.74 E-value=10 Score=35.73 Aligned_cols=118 Identities=18% Similarity=0.196 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCCeeecchhchHH-HHhhhcCC--CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHH
Q 018731 197 RAVETLVHSGLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLR 273 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~--~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~ 273 (351)
+.++.+.+.|++.|-+|.=-..+ ..+.-.|- -.+++...+.++.+++. .++.++.-+=+|..++.++..+.++.+.
T Consensus 70 ~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~-~~~pvsvKiR~g~~~~~~~~~~~~~~l~ 148 (309)
T PF01207_consen 70 EAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA-VPIPVSVKIRLGWDDSPEETIEFARILE 148 (309)
T ss_dssp HHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH--SSEEEEEEESECT--CHHHHHHHHHHH
T ss_pred HHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc-cccceEEecccccccchhHHHHHHHHhh
Confidence 34455555678887766543222 11110000 12677777777777753 4688888888998878888999999999
Q ss_pred hCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccC
Q 018731 274 SIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (351)
Q Consensus 274 ~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~ 322 (351)
+.|++.+++... |+.+. +-.+..++.++++.+.+....+..|
T Consensus 149 ~~G~~~i~vH~R---t~~q~----~~~~a~w~~i~~i~~~~~ipvi~NG 190 (309)
T PF01207_consen 149 DAGVSAITVHGR---TRKQR----YKGPADWEAIAEIKEALPIPVIANG 190 (309)
T ss_dssp HTT--EEEEECS----TTCC----CTS---HHHHHHCHHC-TSEEEEES
T ss_pred hcccceEEEecC---chhhc----CCcccchHHHHHHhhcccceeEEcC
Confidence 999999999522 44431 1123344444444444444333333
No 359
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=81.54 E-value=30 Score=32.29 Aligned_cols=82 Identities=20% Similarity=0.108 Sum_probs=50.3
Q ss_pred HHHHHHHHcC-CCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSG-LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG-~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~l 275 (351)
+.++.+.++| +|.|-+|+-+.+.-+-... -..+.+...+.++.+++.. ++.+. +-+.-+.+++.+.++.+.+.
T Consensus 108 ~~a~~~~~aG~~D~iElN~~cP~~~~gg~~-~~~~~~~~~eiv~~vr~~~-~~pv~----vKl~~~~~~~~~~a~~l~~~ 181 (301)
T PRK07259 108 EVAEKLSKAPNVDAIELNISCPNVKHGGMA-FGTDPELAYEVVKAVKEVV-KVPVI----VKLTPNVTDIVEIAKAAEEA 181 (301)
T ss_pred HHHHHHhccCCcCEEEEECCCCCCCCCccc-cccCHHHHHHHHHHHHHhc-CCCEE----EEcCCCchhHHHHHHHHHHc
Confidence 6777888899 9999886632211000000 1235667777777777621 33322 22234556888999999999
Q ss_pred CCCEEeeec
Q 018731 276 DVDILTLGQ 284 (351)
Q Consensus 276 g~d~i~i~~ 284 (351)
|+|.+.+.+
T Consensus 182 G~d~i~~~n 190 (301)
T PRK07259 182 GADGLSLIN 190 (301)
T ss_pred CCCEEEEEc
Confidence 999887643
No 360
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=81.44 E-value=41 Score=30.37 Aligned_cols=129 Identities=15% Similarity=0.100 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++.+.+......|...|.+= -++|-..-..+++..+-+.++. .+++++. .++++++...+...+.+++-.
T Consensus 22 dpv~aA~~a~~aGAdgITvH--lReDrRHI~d~Dv~~L~~~~~~---~lNlE~a-----~t~em~~ia~~~kP~~vtLVP 91 (234)
T cd00003 22 DPVEAALLAEKAGADGITVH--LREDRRHIQDRDVRLLRELVRT---ELNLEMA-----PTEEMLEIALEVKPHQVTLVP 91 (234)
T ss_pred CHHHHHHHHHHcCCCEEEec--CCCCcCcCCHHHHHHHHHHcCC---CEEeccC-----CCHHHHHHHHHCCCCEEEECC
Confidence 34556666677899988761 1111111112444444433331 4667653 278999999999999999877
Q ss_pred hchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 215 ETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 215 es~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|.-.++. ..--+-....+.....++.+++ .||.|+..+ .-+ .+.++..+++|++.|-++
T Consensus 92 Ekr~E~TTegGldv~~~~~~l~~~i~~l~~--~gI~VSLFi----DPd----~~qi~~A~~~GAd~VELh 151 (234)
T cd00003 92 EKREELTTEGGLDVAGQAEKLKPIIERLKD--AGIRVSLFI----DPD----PEQIEAAKEVGADRVELH 151 (234)
T ss_pred CCCCCccCCccchhhcCHHHHHHHHHHHHH--CCCEEEEEe----CCC----HHHHHHHHHhCcCEEEEe
Confidence 6644431 1000012356777788899999 999865432 122 345577789999999884
No 361
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=81.42 E-value=34 Score=33.41 Aligned_cols=127 Identities=16% Similarity=0.145 Sum_probs=75.1
Q ss_pred CchhH-HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcE-EEEee--cCCCC--CHHHHHHHHHc
Q 018731 132 DPMEP-ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM-VECLT--SDFRG--DLRAVETLVHS 205 (351)
Q Consensus 132 ~~eei-~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~-i~~~~--~~~~~--~~e~l~~L~~a 205 (351)
+++++ ...++...+.|++-+-+- |.+.| ...+..-++.+|+...... .-+++ |-..+ -.+.++.|.+.
T Consensus 95 yaDDvVe~Fv~ka~~nGidvfRiF----DAlND--~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~ 168 (472)
T COG5016 95 YADDVVEKFVEKAAENGIDVFRIF----DALND--VRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEM 168 (472)
T ss_pred CchHHHHHHHHHHHhcCCcEEEec----hhccc--hhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHc
Confidence 45554 567777888999987552 33544 3567788888888732221 11222 22111 14788999999
Q ss_pred CCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe--EEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEe
Q 018731 206 GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI--TKSSIMLGLGESDDDLKEAMADLRSIDVDILT 281 (351)
Q Consensus 206 G~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~--v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~ 281 (351)
|+|+|++- +|-- --+.....+.++.+++.. ++. +.+.-..|+ -..+.....+.|+|.+-
T Consensus 169 g~DSIciK-----DmaG-----lltP~~ayelVk~iK~~~-~~pv~lHtH~TsG~------a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 169 GVDSICIK-----DMAG-----LLTPYEAYELVKAIKKEL-PVPVELHTHATSGM------AEMTYLKAVEAGVDGID 229 (472)
T ss_pred CCCEEEee-----cccc-----cCChHHHHHHHHHHHHhc-CCeeEEecccccch------HHHHHHHHHHhCcchhh
Confidence 99999762 3321 235566667777777643 444 444445553 23444555678888653
No 362
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=81.21 E-value=13 Score=34.61 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=60.6
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCC------CcHHHHHHHHHHHHHhCCC-cEEEEe-ecCC---CCC-H---
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPD------GGSGHFARTVKAMKKQKPD-IMVECL-TSDF---RGD-L--- 196 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~------~~~~~~~~li~~ik~~~p~-i~i~~~-~~~~---~~~-~--- 196 (351)
+..++...+..+.+.|++.|.+..|+++...+ .+..+..++++.+++...+ +.+.+. .|.+ ..+ +
T Consensus 83 n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~~~~ 162 (287)
T PF02219_consen 83 NREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFEAEL 162 (287)
T ss_dssp BHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHHHHH
Confidence 45778888888889999999888887643311 1233467888888854322 344321 1221 112 2
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCC--eEEEeee
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGL--ITKSSIM 255 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi--~v~~~~I 255 (351)
+.++.=.++|.+.+. +.+.++.+...+.++.+++ .|+ .+-.+++
T Consensus 163 ~~l~~Ki~aGA~f~i-------------TQ~~fd~~~~~~~~~~~~~--~g~~~pIi~GI~ 208 (287)
T PF02219_consen 163 KRLKKKIDAGADFII-------------TQPFFDAEAFERFLDRLRE--AGIDVPIIPGIM 208 (287)
T ss_dssp HHHHHHHHTTESEEE-------------EEE-SSHHHHHHHHHHHHH--TTHTSEEEEEEE
T ss_pred HHHHHHHHCCCCEEe-------------ccccCCHHHHHHHHHHHHH--cCCCCcEEEEEe
Confidence 233344567887651 1134566777777778877 776 5555544
No 363
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=81.17 E-value=30 Score=28.72 Aligned_cols=71 Identities=18% Similarity=0.121 Sum_probs=47.5
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.+++|+. +++.+..+.-|.++|-... ....+.++++.+++...+ .|.+. -++.+.++.+..|+++|+++|
T Consensus 50 ~tp~e~v---~aA~~~dv~vIgvSsl~g~-----h~~l~~~lve~lre~G~~-~i~v~-~GGvip~~d~~~l~~~G~~~i 119 (143)
T COG2185 50 QTPEEAV---RAAVEEDVDVIGVSSLDGG-----HLTLVPGLVEALREAGVE-DILVV-VGGVIPPGDYQELKEMGVDRI 119 (143)
T ss_pred CCHHHHH---HHHHhcCCCEEEEEeccch-----HHHHHHHHHHHHHHhCCc-ceEEe-ecCccCchhHHHHHHhCccee
Confidence 4556554 4446777888888764431 136788899999998654 33322 234457777999999999988
Q ss_pred e
Q 018731 211 A 211 (351)
Q Consensus 211 ~ 211 (351)
.
T Consensus 120 f 120 (143)
T COG2185 120 F 120 (143)
T ss_pred e
Confidence 5
No 364
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.12 E-value=8.3 Score=35.91 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=46.5
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+++.++.+.|++.|.| |.++ .+.+.+.++.++.. ..+++ .++ .+.+.+..+++.|+|.|+.|.
T Consensus 204 leea~ea~~~gaDiI~L-----Dn~s---~e~l~~av~~~~~~---~~lea--SGG-I~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 204 LDQLEEALELGVDAVLL-----DNMT---PDTLREAVAIVAGR---AITEA--SGR-ITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred HHHHHHHHHcCCCEEEe-----CCCC---HHHHHHHHHHhCCC---ceEEE--ECC-CCHHHHHHHHhcCCCEEEeCh
Confidence 45666667889988888 3344 47788888766543 23555 444 499999999999999998764
No 365
>PRK02227 hypothetical protein; Provisional
Probab=81.10 E-value=43 Score=30.37 Aligned_cols=165 Identities=19% Similarity=0.193 Sum_probs=95.9
Q ss_pred CCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEE-EEeecCC-----CCCHHHHHH
Q 018731 128 PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV-ECLTSDF-----RGDLRAVET 201 (351)
Q Consensus 128 ~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i-~~~~~~~-----~~~~e~l~~ 201 (351)
..+..+..+..-+......|+++|-+.=...... ....+.+..+++.++...++..+ .+.-.+. ....+..+.
T Consensus 61 D~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~-~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~ 139 (238)
T PRK02227 61 DVPYKPGTISLAALGAAATGADYVKVGLYGGKTA-EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAI 139 (238)
T ss_pred CCCCCchHHHHHHHHHHhhCCCEEEEcCCCCCcH-HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHH
Confidence 3344566676667777788999987721111101 11123344455666665555443 2221221 124588899
Q ss_pred HHHcCCCeeecchhchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CC-CHHHHHHHHHHHHhCCCC
Q 018731 202 LVHSGLDVFAHNIETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GE-SDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 202 L~~aG~~~i~~~ies~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gE-t~e~~~~~l~~l~~lg~d 278 (351)
.+++|++.+-+ +|..+-. .... --+.++.-+.++.+++ .|+ +.|+ |- ..+| +..|+.+++|
T Consensus 140 a~~aGf~g~Ml--DTa~Kdg~~Lfd--~l~~~~L~~Fv~~ar~--~Gl------~~gLAGSL~~~d----ip~L~~l~pD 203 (238)
T PRK02227 140 AADAGFDGAML--DTAIKDGKSLFD--HMDEEELAEFVAEARS--HGL------MSALAGSLKFED----IPALKRLGPD 203 (238)
T ss_pred HHHcCCCEEEE--ecccCCCcchHh--hCCHHHHHHHHHHHHH--ccc------HhHhcccCchhh----HHHHHhcCCC
Confidence 99999998765 4543211 1111 2377888888889998 776 4677 43 3344 4566899999
Q ss_pred EEeeecccCCCCCcccccCCCCHHHHHHHHHHHH
Q 018731 279 ILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGE 312 (351)
Q Consensus 279 ~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~ 312 (351)
++.|---+ -.... ....++++...++++.+.
T Consensus 204 ~lGfRgav-C~g~d--R~~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 204 ILGVRGAV-CGGGD--RTGRIDPELVAELREALR 234 (238)
T ss_pred EEEechhc-cCCCC--cccccCHHHHHHHHHHhh
Confidence 99983222 11111 345688888888877654
No 366
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=81.00 E-value=32 Score=31.17 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 018731 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKL 243 (351)
Q Consensus 167 ~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~ 243 (351)
..+.+.++.+++..++..+.+ ..+..+.+.++.+.++|.|.+-+|- .+.+.+. ..+.++..+.++.+++
T Consensus 170 ~~~~~~i~~lr~~~~~~~i~v--~gGI~~~e~i~~~~~~gaD~vvvGS----ai~~~~~--~~~~~~~~~~~~~~~~ 238 (244)
T PRK13125 170 VSVERNIKRVRNLVGNKYLVV--GFGLDSPEDARDALSAGADGVVVGT----AFIEELE--KNGVESALNLLKKIRG 238 (244)
T ss_pred HHHHHHHHHHHHhcCCCCEEE--eCCcCCHHHHHHHHHcCCCEEEECH----HHHHHHH--hcCHHHHHHHHHHHHH
Confidence 456677778887654444432 3344488999999999999987762 2222222 1235566666665543
No 367
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=80.96 E-value=17 Score=34.13 Aligned_cols=57 Identities=19% Similarity=0.359 Sum_probs=40.6
Q ss_pred CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC-C------cHHHHHHHHHHHHHhCCCcEE
Q 018731 127 NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD-G------GSGHFARTVKAMKKQKPDIMV 185 (351)
Q Consensus 127 ~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~-~------~~~~~~~li~~ik~~~p~i~i 185 (351)
+..+.+.+.+.++++.+.+.|++.|.|-|.. . ..| . .-.-+.+.++.||+.+|++.|
T Consensus 54 g~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~-~-~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~v 117 (322)
T PRK13384 54 GISRLPESALADEIERLYALGIRYVMPFGIS-H-HKDAKGSDTWDDNGLLARMVRTIKAAVPEMMV 117 (322)
T ss_pred CcceECHHHHHHHHHHHHHcCCCEEEEeCCC-C-CCCCCcccccCCCChHHHHHHHHHHHCCCeEE
Confidence 3445667889999999999999999887752 1 111 0 012467889999999998643
No 368
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=80.94 E-value=43 Score=33.61 Aligned_cols=79 Identities=23% Similarity=0.172 Sum_probs=51.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+++...+.++++.+.|+..|.|..-..- +. ...+.++++.+++..+ +.|++- +++.-+.....-.-.++|++.|
T Consensus 151 t~e~~~~~a~~l~~~Gad~I~i~Dt~G~-l~---P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAieaGad~v 225 (467)
T PRK14041 151 TLEYYLEFARELVDMGVDSICIKDMAGL-LT---PKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEAGADMF 225 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccCC-cC---HHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHhCCCEE
Confidence 4677888899999999999999432221 22 3789999999998763 544432 2222123333444568999998
Q ss_pred ecchh
Q 018731 211 AHNIE 215 (351)
Q Consensus 211 ~~~ie 215 (351)
..++.
T Consensus 226 D~sv~ 230 (467)
T PRK14041 226 DTAIS 230 (467)
T ss_pred Eeecc
Confidence 66544
No 369
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=80.87 E-value=18 Score=33.28 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHh-cCcceeccCcc
Q 018731 259 GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGES-IGFRYVASGPL 324 (351)
Q Consensus 259 gEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~-~G~~~~~~~~~ 324 (351)
.+..|+..+.+..+++.|++.+.+- .|| .+++ +++.++.. -||.|+.+.+-
T Consensus 127 DLP~ee~~~~~~~~~~~gi~~I~lv---~Pt---------T~~e---ri~~i~~~a~gFIY~vS~~G 178 (263)
T CHL00200 127 DLPYEESDYLISVCNLYNIELILLI---APT---------SSKS---RIQKIARAAPGCIYLVSTTG 178 (263)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEE---CCC---------CCHH---HHHHHHHhCCCcEEEEcCCC
Confidence 3445566666666667776655541 341 1223 34444443 48999866443
No 370
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=80.57 E-value=10 Score=37.67 Aligned_cols=120 Identities=17% Similarity=0.188 Sum_probs=70.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCC------CCCcHHHHHHHHHHHHHhCCC-cEEEEe-ecCC---------CC
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDI------PDGGSGHFARTVKAMKKQKPD-IMVECL-TSDF---------RG 194 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l------~~~~~~~~~~li~~ik~~~p~-i~i~~~-~~~~---------~~ 194 (351)
..+.+...++.+.+.|++.|.-.=|+|+.= ..+++.+-.++++.|++.+-+ +.|.+. -|.+ ..
T Consensus 90 ~~~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~IgVAgYPEghpe~~~~~~~~ 169 (590)
T KOG0564|consen 90 PKEMIDKALEQAKALGIRNILALRGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGDYFCIGVAGYPEGHPEAPSHDYLA 169 (590)
T ss_pred cHHHHHHHHHHHHHhCchhhhhhcCCCCCCccccccccCCchhHHHHHHHHHHHhCCeEEEEeccCCCCCcCCcccchhh
Confidence 345666777788889999987665664311 124677889999999998644 223221 1221 22
Q ss_pred CHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHH
Q 018731 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEA 268 (351)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~ 268 (351)
|-+.++.=.+||.|-| ..++ -++.+..++.++..++ .|+ +.-++.|+ -++...+...
T Consensus 170 Dl~yLk~KvdaGaDFI------iTQl-------FYd~e~flkfv~~cR~--~gi--~~PIvPGIMPI~~Y~sf~R~ 228 (590)
T KOG0564|consen 170 DLPYLKEKVDAGADFI------ITQL-------FYDVETFLKFVKDCRA--AGI--NVPIVPGIMPIQSYRSFLRI 228 (590)
T ss_pred hhHHHHHhhcccchhh------hhhh-------hcCHHHHHHHHHHHHH--hCC--CCCcccccccchhHHHHHHH
Confidence 3455555556777654 1121 2466667777777777 676 45555665 4555544443
No 371
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=80.52 E-value=6.5 Score=35.53 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHhCCCcEEEEecc--------CCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSV--------DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg--------~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
+|+.+.+..+ ....++|.-- .+-++. ...+.+.++++.+++. ++.+..+... +.+.++.-++.
T Consensus 74 ~e~~~ia~~~---kP~~vtLVPE~r~e~TTegGldv~-~~~~~l~~~i~~L~~~--gIrvSLFiDP---~~~qi~~A~~~ 144 (239)
T PF03740_consen 74 EEMVDIALKV---KPDQVTLVPEKREELTTEGGLDVA-GNRDRLKPVIKRLKDA--GIRVSLFIDP---DPEQIEAAKEL 144 (239)
T ss_dssp HHHHHHHHHH-----SEEEEE--SGGGBSTTSSB-TC-GGHHHHHHHHHHHHHT--T-EEEEEE-S----HHHHHHHHHT
T ss_pred HHHHHHHHhC---CcCEEEECCCCCCCcCCCcCChhh-cCHHHHHHHHHHHHhC--CCEEEEEeCC---CHHHHHHHHHc
Confidence 5566665544 4566766321 111122 2357899999999986 7887765421 67999999999
Q ss_pred CCCeeecchhchHHHH-hhhcCCCCC-HHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 206 GLDVFAHNIETVKRLQ-RIVRDPRAG-YEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 206 G~~~i~~~ies~~~~~-~~~r~~~~~-~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|.++|-+.-..+-..+ ..-+ .... +++..++.+.+++ .|+.|++ |+|=+.+.+... ++--++..++++
T Consensus 145 Gad~VELhTG~yA~a~~~~~~-~~~ell~~l~~aa~~a~~--lGL~VnA----GHgL~y~N~~~i---~~i~~i~EvnIG 214 (239)
T PF03740_consen 145 GADRVELHTGPYANAFDDAEE-AEEELLERLRDAARYAHE--LGLGVNA----GHGLNYDNVRPI---AAIPPIEEVNIG 214 (239)
T ss_dssp T-SEEEEETHHHHHHSSHHHH-HHHHHHHHHHHHHHHHHH--TT-EEEE----ETT--TTTHHHH---HTSTTEEEEEE-
T ss_pred CCCEEEEehhHhhhhcCCHHH-HHHHHHHHHHHHHHHHHH--cCCEEec----CCCCCHHHHHHH---HhCCCceEEecC
Confidence 9999976543332221 0000 0112 4777888888888 9998775 455444443322 223346667776
Q ss_pred ccc
Q 018731 284 QYL 286 (351)
Q Consensus 284 ~~l 286 (351)
..+
T Consensus 215 Hai 217 (239)
T PF03740_consen 215 HAI 217 (239)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 372
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=80.36 E-value=17 Score=33.98 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=49.6
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
.++.++.++.+.+.|.+-|++-++.. + .+.+.++.+.+...+|++.+-+....+ ....++.|.++|+++++.
T Consensus 168 ~~eAi~Ra~ay~eAGAD~ifv~~~~~----~--~~ei~~~~~~~~~~~p~~pl~~~~~~~--~~~~~~eL~~lG~~~v~~ 239 (285)
T TIGR02320 168 MEDALKRAEAYAEAGADGIMIHSRKK----D--PDEILEFARRFRNHYPRTPLVIVPTSY--YTTPTDEFRDAGISVVIY 239 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCC----C--HHHHHHHHHHhhhhCCCCCEEEecCCC--CCCCHHHHHHcCCCEEEE
Confidence 45666777788888998888864322 1 367888888887766665553321111 112478899999999987
Q ss_pred chhc
Q 018731 213 NIET 216 (351)
Q Consensus 213 ~ies 216 (351)
+...
T Consensus 240 ~~~~ 243 (285)
T TIGR02320 240 ANHL 243 (285)
T ss_pred hHHH
Confidence 6444
No 373
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=80.32 E-value=15 Score=34.10 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=51.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++.+.+.++.+.+.|+..|.|..-..-.. ...+.++++.+++..+ +.+.+- +++.-+-..-.-...++|++.
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~ 220 (275)
T cd07937 146 HTLEYYVKLAKELEDMGADSICIKDMAGLLT----PYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDI 220 (275)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC----HHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 4578888899999999999999943222212 3789999999998764 444431 333322233333345789999
Q ss_pred eecch
Q 018731 210 FAHNI 214 (351)
Q Consensus 210 i~~~i 214 (351)
|..++
T Consensus 221 vd~sv 225 (275)
T cd07937 221 VDTAI 225 (275)
T ss_pred EEEec
Confidence 86544
No 374
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=80.29 E-value=29 Score=32.97 Aligned_cols=163 Identities=18% Similarity=0.244 Sum_probs=87.2
Q ss_pred HHHHHHHhCCCcEEEEeccCC-------CCC--CCCcHHHHH-HHHHHHHHhCCCcEEEEeecCCCCCH-HHHHHHHHcC
Q 018731 138 NTAKAIASWGVDYIVLTSVDR-------DDI--PDGGSGHFA-RTVKAMKKQKPDIMVECLTSDFRGDL-RAVETLVHSG 206 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~-------~~l--~~~~~~~~~-~li~~ik~~~p~i~i~~~~~~~~~~~-e~l~~L~~aG 206 (351)
+.++.+.+.|++.+.||-... ..- .+.++..+. ++++++-+. ++-|.+... ++ -..+.+.-+.
T Consensus 121 ~~l~~~y~lGvR~~~Lt~n~~N~~a~g~~~~~~~~~GLT~~G~~vV~~mn~l--Gm~vDvSH~----s~~t~~Dv~~~s~ 194 (320)
T PF01244_consen 121 ERLDEFYDLGVRYIGLTWNYRNELADGCGEPGNRDGGLTPFGREVVREMNRL--GMLVDVSHL----SEKTFWDVLEISK 194 (320)
T ss_dssp HHHHHHHHTTEEEEES-SSSBBSSBBBTTSTTTTSSSB-HHHHHHHHHHHHH--T-EEE-TTB-----HHHHHHHHHH-S
T ss_pred HHHHHHHHcCCEEEEEeecCCCccccccccccccCCCcChHHHHHHHHHHHc--CCeeeeccC----CHHHHHHHHhhcC
Confidence 566777889999998873211 111 234555665 677777776 677776432 33 3344444433
Q ss_pred CC-eeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CC------CHHHHHHHHHHHHh-CCC
Q 018731 207 LD-VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GE------SDDDLKEAMADLRS-IDV 277 (351)
Q Consensus 207 ~~-~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gE------t~e~~~~~l~~l~~-lg~ 277 (351)
.- .++|+ ....+.. .|+.-.++.+++| .+ .|=-+..++.-.+ ++ |.+++.++++++.+ .|+
T Consensus 195 ~PviaSHS--n~ral~~---h~RNltDe~irai---a~--~GGviGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~ 264 (320)
T PF01244_consen 195 KPVIASHS--NARALCP---HPRNLTDEQIRAI---AE--RGGVIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGI 264 (320)
T ss_dssp SEEEECCE--EBTTTS-----TTSB-HHHHHHH---HH--TT-EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-G
T ss_pred CCEEEecc--ChHhhCC---CCCCCCHHHHHHH---HH--CCcEEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCC
Confidence 22 22332 1222221 1334455556554 34 5555777777666 44 79999999999877 589
Q ss_pred CEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 278 DILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 278 d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
|+|.++.=+--... .....-++.++..+.+.+.+.||..
T Consensus 265 dhVgiGsDfdg~~~--~~~gl~~~~~~~~l~~~L~~rG~s~ 303 (320)
T PF01244_consen 265 DHVGIGSDFDGIDG--PPEGLEDPSDLPNLTEELLKRGYSE 303 (320)
T ss_dssp GGEEEE--BTTTSS--HBBTBSSGGGHHHHHHHHHHTTS-H
T ss_pred CeEEECcccCCCCC--CCCccCCHHHHHHHHHHHHHCCCCH
Confidence 99999732200000 0123334667888888888788854
No 375
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=80.16 E-value=31 Score=32.20 Aligned_cols=81 Identities=20% Similarity=0.135 Sum_probs=50.4
Q ss_pred HHHHHHHHcC--CCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 197 RAVETLVHSG--LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 197 e~l~~L~~aG--~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
+.++.+.+++ ++.|-+|+-+.....+... -..+.+...+.++.+++. .++.+..- +..+.++..+.++.+.+
T Consensus 107 ~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~-l~~~~~~~~eiv~~vr~~-~~~pv~vK----i~~~~~~~~~~a~~l~~ 180 (300)
T TIGR01037 107 EVAEKLEKAPPYVDAYELNLSCPHVKGGGIA-IGQDPELSADVVKAVKDK-TDVPVFAK----LSPNVTDITEIAKAAEE 180 (300)
T ss_pred HHHHHHHhccCccCEEEEECCCCCCCCCccc-cccCHHHHHHHHHHHHHh-cCCCEEEE----CCCChhhHHHHHHHHHH
Confidence 5567777764 8888887654322100000 124677777888888762 14433222 23456788889999999
Q ss_pred CCCCEEeee
Q 018731 275 IDVDILTLG 283 (351)
Q Consensus 275 lg~d~i~i~ 283 (351)
.|+|.+.+.
T Consensus 181 ~G~d~i~v~ 189 (300)
T TIGR01037 181 AGADGLTLI 189 (300)
T ss_pred cCCCEEEEE
Confidence 999999874
No 376
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=80.14 E-value=9.9 Score=34.03 Aligned_cols=75 Identities=23% Similarity=0.252 Sum_probs=50.5
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHH-HHHcCCCeee
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVET-LVHSGLDVFA 211 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~-L~~aG~~~i~ 211 (351)
..+..+.++.+.+.|+..+.+++.+..... .+ ...++++.+++.. ++.+-+ .++..+.+.+.. +++.|++.+.
T Consensus 152 ~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~-~g--~~~~~~~~i~~~~-~ipvia--~GGi~s~~di~~~l~~~gadgV~ 225 (232)
T TIGR03572 152 GRDPVEWAREAEQLGAGEILLNSIDRDGTM-KG--YDLELIKTVSDAV-SIPVIA--LGGAGSLDDLVEVALEAGASAVA 225 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCCCccCCc-CC--CCHHHHHHHHhhC-CCCEEE--ECCCCCHHHHHHHHHHcCCCEEE
Confidence 344567788888999999999985542111 11 2367777787753 445433 455557777777 9999999987
Q ss_pred cc
Q 018731 212 HN 213 (351)
Q Consensus 212 ~~ 213 (351)
++
T Consensus 226 vg 227 (232)
T TIGR03572 226 AA 227 (232)
T ss_pred Ee
Confidence 65
No 377
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=80.05 E-value=12 Score=34.65 Aligned_cols=64 Identities=23% Similarity=0.392 Sum_probs=44.9
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+++.+....|++.|.|.. +. .+.+.++++.+++. +.+.+++ .++ .+.+.+..++++|+|.|.++
T Consensus 192 eea~~A~~~gaD~I~ld~-----~~---~e~l~~~v~~i~~~-~~i~i~a--sGG-It~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 192 EEAEEALEAGADIIMLDN-----MS---PEELKEAVKLLKGL-PRVLLEA--SGG-ITLENIRAYAETGVDVISTG 255 (269)
T ss_pred HHHHHHHHcCCCEEEECC-----CC---HHHHHHHHHHhccC-CCeEEEE--ECC-CCHHHHHHHHHcCCCEEEEc
Confidence 344445567888888721 32 36777777777765 5666655 445 48999999999999999865
No 378
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=79.95 E-value=57 Score=32.74 Aligned_cols=79 Identities=13% Similarity=0.070 Sum_probs=50.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEee-cCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT-SDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~-~~~~~~~e~l~~L~~aG~~~i 210 (351)
+.+-..+.++++.+.|++.|.|..-..- +. ...+.++++++++. +++.|..-+ ++.-+.....-.-.++|++.|
T Consensus 161 t~~y~~~~a~~l~~~Gad~I~IkDtaG~-l~---P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAieAGad~v 235 (468)
T PRK12581 161 TLNYYLSLVKELVEMGADSICIKDMAGI-LT---PKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVEAGADRI 235 (468)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCCCC-cC---HHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHHcCCCEE
Confidence 3455678888888999999999433221 22 37899999999884 566554322 222123344444568999998
Q ss_pred ecchh
Q 018731 211 AHNIE 215 (351)
Q Consensus 211 ~~~ie 215 (351)
-.++.
T Consensus 236 D~ai~ 240 (468)
T PRK12581 236 DTALS 240 (468)
T ss_pred Eeecc
Confidence 66554
No 379
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=79.95 E-value=53 Score=30.92 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=45.8
Q ss_pred CchhHHHHHHHHHhCCCcEEE--EeccCCCC-----CCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHH
Q 018731 132 DPMEPENTAKAIASWGVDYIV--LTSVDRDD-----IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~--ltgg~~~~-----l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~ 204 (351)
+++++.+.++...+.|+..|. ++|+.... ......+.+.++++..++. ++.+.+-.. ....++.+.+
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~--g~~v~~H~~----~~~~i~~~l~ 191 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA--GLYVAAHAY----GAEAIRRAIR 191 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc--CCEEEEEeC----CHHHHHHHHH
Confidence 467888888888888998774 34432100 0011247788888888886 444432111 2345666667
Q ss_pred cCCCeeecc
Q 018731 205 SGLDVFAHN 213 (351)
Q Consensus 205 aG~~~i~~~ 213 (351)
+|++.+.|+
T Consensus 192 ~G~~~i~H~ 200 (342)
T cd01299 192 AGVDTIEHG 200 (342)
T ss_pred cCCCEEeec
Confidence 777777664
No 380
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=79.49 E-value=48 Score=34.32 Aligned_cols=98 Identities=16% Similarity=0.085 Sum_probs=60.3
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+++...+.++++.+.|++.|.|-.-..-.. ...+.++++.+++..+ +.|++- +++.-+.-...-.-.++|++.|
T Consensus 147 ~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~----P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~~v 221 (582)
T TIGR01108 147 TLETYLDLAEELLEMGVDSICIKDMAGILT----PKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGADGI 221 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcC----HHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCCEE
Confidence 567788889999999999999943332212 3789999999998764 444332 2222123334444568999999
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHH
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLK 239 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~ 239 (351)
...+.++-. .. .....+..+..++
T Consensus 222 d~ai~GlG~---~t--Gn~~le~vv~~L~ 245 (582)
T TIGR01108 222 DTAISSMSG---GT--SHPPTETMVAALR 245 (582)
T ss_pred Eeccccccc---cc--cChhHHHHHHHHH
Confidence 766544322 11 1235666666554
No 381
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=79.45 E-value=44 Score=29.50 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCC-HHHHHHHHHHHHhCCCCE
Q 018731 228 RAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GES-DDDLKEAMADLRSIDVDI 279 (351)
Q Consensus 228 ~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt-~e~~~~~l~~l~~lg~d~ 279 (351)
+.++.+.++.++.++. .|+.+ --+++|+ +-- .--..+.++.+++.|+.-
T Consensus 76 g~tl~~i~emvk~ar~--~gvt~-PIiLmgYYNPIl~yG~e~~iq~ak~aGanG 126 (268)
T KOG4175|consen 76 GTTLNSIIEMVKEARP--QGVTC-PIILMGYYNPILRYGVENYIQVAKNAGANG 126 (268)
T ss_pred CCcHHHHHHHHHHhcc--cCccc-ceeeeecccHHHhhhHHHHHHHHHhcCCCc
Confidence 5678888888888777 66642 2223344 110 111245666667777654
No 382
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=79.41 E-value=15 Score=33.96 Aligned_cols=65 Identities=17% Similarity=0.307 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+++.++.+.|++.|.|.- +. ...+.++++.+++.+|.+.+.+ .++. +++.+..+.++|+|.|.++
T Consensus 194 eea~~A~~~gaD~I~ld~-----~~---p~~l~~~~~~~~~~~~~i~i~A--sGGI-~~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 194 EEALAAAEAGADILQLDK-----FS---PEELAELVPKLRSLAPPVLLAA--AGGI-NIENAAAYAAAGADILVTS 258 (272)
T ss_pred HHHHHHHHcCCCEEEECC-----CC---HHHHHHHHHHHhccCCCceEEE--ECCC-CHHHHHHHHHcCCcEEEEC
Confidence 344445578999888731 22 2566777777776556666655 4454 8999999999999999654
No 383
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=79.41 E-value=12 Score=34.43 Aligned_cols=130 Identities=11% Similarity=0.055 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++...+.|++.+++..-+... ..-.++++.|.+ . ++.+++ .+++.+ +.++.+.++|+++|.+|
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdgg~------~~n~~~i~~i~~-~-~~~vqv--GGGIR~-e~i~~~l~~Ga~rViig 111 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGADD------ASLAAALEALRA-Y-PGGLQV--GGGVNS-ENAMSYLDAGASHVIVT 111 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCC------cccHHHHHHHHh-C-CCCEEE--eCCccH-HHHHHHHHcCCCEEEEc
Confidence 578889999999999988774332211 112567777776 3 356654 455544 99999999999999886
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee--------e--eC-CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM--------L--GL-GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I--------v--Gl-gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
--.++. +..+++-..+.++..-. --+-+..+.- . |= ..|.-+..+.+..+.+.++..+-+
T Consensus 112 T~Av~~-------~~~~p~~v~~~~~~~G~--~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~ 182 (262)
T PLN02446 112 SYVFRD-------GQIDLERLKDLVRLVGK--QRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLV 182 (262)
T ss_pred hHHHhC-------CCCCHHHHHHHHHHhCC--CCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEE
Confidence 322211 12234333343333211 1133333322 1 11 224445666667777778877666
Q ss_pred e
Q 018731 283 G 283 (351)
Q Consensus 283 ~ 283 (351)
.
T Consensus 183 T 183 (262)
T PLN02446 183 H 183 (262)
T ss_pred E
Confidence 3
No 384
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=79.33 E-value=54 Score=30.53 Aligned_cols=141 Identities=15% Similarity=0.122 Sum_probs=78.3
Q ss_pred HHHHHhCCCcEEEEeccCC---CCCCCCc---HHHHHHHHHHHHHhCCCcEEEEeecCCCCC----HHHHHHHHHcCCCe
Q 018731 140 AKAIASWGVDYIVLTSVDR---DDIPDGG---SGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETLVHSGLDV 209 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltgg~~---~~l~~~~---~~~~~~li~~ik~~~p~i~i~~~~~~~~~~----~e~l~~L~~aG~~~ 209 (351)
+..+.+.|++-++++|..- --++|.+ ++.+.+.++.|.+.. ++.+.+=...+..+ ...+..+.++|+..
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~-~lPv~vD~dtGfG~~~nvartV~~~~~aG~ag 109 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV-DLPVLVDIDTGFGEALNVARTVRELEQAGAAG 109 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc-CCceEEeccCCCCcHHHHHHHHHHHHHcCcce
Confidence 3445678999999988431 0123322 456666666666542 44433211112222 37888999999999
Q ss_pred eecchhchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCC--CCeEEEee-eeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKK--GLITKSSI-MLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~--Gi~v~~~~-IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+++--++..... ..-+++-.+.++..+.|+.+++... .+.+.+-. -.+. +..++..+-++.-.+.|.|.+..
T Consensus 110 i~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~-~~ld~AI~Ra~AY~eAGAD~if~ 185 (289)
T COG2513 110 IHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLV-EGLDDAIERAQAYVEAGADAIFP 185 (289)
T ss_pred eeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHh-ccHHHHHHHHHHHHHcCCcEEcc
Confidence 877544444332 1111123588888888888887554 33222211 1122 12444444445556789998766
No 385
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=79.14 E-value=16 Score=33.76 Aligned_cols=79 Identities=8% Similarity=0.066 Sum_probs=49.4
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC-cEEEEe-ecCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECL-TSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~-i~i~~~-~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++.+.+.++.+.+.|+..|.|..-..-.. .+++.++++.+++..+. +.+..- +++.-+.-.-.-...++|++
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~ 210 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVDSFGSMY----PEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVE 210 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCCC----HHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCC
Confidence 3567788888888888999998843322222 37889999999887642 555432 33322222333334578998
Q ss_pred eeecc
Q 018731 209 VFAHN 213 (351)
Q Consensus 209 ~i~~~ 213 (351)
.|..+
T Consensus 211 ~vd~s 215 (266)
T cd07944 211 IIDAT 215 (266)
T ss_pred EEEEe
Confidence 88543
No 386
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=78.94 E-value=21 Score=31.22 Aligned_cols=80 Identities=19% Similarity=0.317 Sum_probs=48.2
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC---cEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD---IMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~---i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
+...+.+++.++.+.|++.+.+---+....++-.+- .-+++.+++.... +.++....+ .++.++.+.++|.+
T Consensus 15 dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G--~pvV~slR~~~~~~~ffD~HmMV~~---Peq~V~~~a~agas 89 (224)
T KOG3111|consen 15 DFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFG--PPVVESLRKHTGADPFFDVHMMVEN---PEQWVDQMAKAGAS 89 (224)
T ss_pred chHHHHHHHHHHHHcCCCeEEEeeecccccCCcccc--hHHHHHHHhccCCCcceeEEEeecC---HHHHHHHHHhcCcc
Confidence 345667788888999999887632222222321111 2356677765311 334433321 45789999999999
Q ss_pred eeecchhc
Q 018731 209 VFAHNIET 216 (351)
Q Consensus 209 ~i~~~ies 216 (351)
.+++..|.
T Consensus 90 ~~tfH~E~ 97 (224)
T KOG3111|consen 90 LFTFHYEA 97 (224)
T ss_pred eEEEEEee
Confidence 99876655
No 387
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=78.70 E-value=48 Score=29.57 Aligned_cols=181 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchh
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ie 215 (351)
+...+..+++.|++++.++.-.- ++..+.+.+...++..+..+..+.+.- |... ..+-.+.+.++
T Consensus 62 P~~aL~klk~~gy~eviiQ~lhi--IpG~EyEklvr~V~~~~~dF~~lkig~--PlLy-~k~DYe~~v~a---------- 126 (265)
T COG4822 62 PIQALNKLKDQGYEEVIIQPLHI--IPGIEYEKLVREVNKYSNDFKRLKIGR--PLLY-YKNDYEICVEA---------- 126 (265)
T ss_pred HHHHHHHHHHccchheeeeeeee--cCchHHHHHHHHHHHHhhhhheeecCC--ceee-chhhHHHHHHH----------
Q ss_pred chHHHHh----------hhcCCCCCHHHHHHHHHHH-HHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeec
Q 018731 216 TVKRLQR----------IVRDPRAGYEQSLEVLKHA-KLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 216 s~~~~~~----------~~r~~~~~~~~~l~~i~~~-~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
...... +..|..+........++.. .+ .|+ .++.++--|..-.+...++.+++.|+..+++.+
T Consensus 127 -ik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~--~~f---~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~P 200 (265)
T COG4822 127 -IKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDE--YGF---DNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIP 200 (265)
T ss_pred -HHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHh--cCC---CceEEEEecCCCcHHHHHHHHHHcCCceEEEee
Q ss_pred ccCCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccchHHHHHH
Q 018731 285 YLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTM 339 (351)
Q Consensus 285 ~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~~~~~~~ 339 (351)
++--...+ .......++-+.|+.+.+..||.--..-.-...-+..-+.|++++
T Consensus 201 lMlvAG~H--a~nDMasddedswk~il~~~G~~v~~~l~GLGE~~~iq~ifi~Hi 253 (265)
T COG4822 201 LMLVAGDH--AKNDMASDDEDSWKNILEKNGFKVEVYLHGLGENPAIQAIFIDHI 253 (265)
T ss_pred eEEeechh--hhhhhcccchHHHHHHHHhCCceeEEEeecCCCcHHHHHHHHHHH
No 388
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=78.61 E-value=15 Score=33.92 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.++++++.+.|++-|.| |.++ .+.+.+.++.+.. ...+.+++ +++ .+.+.+...++.|+|.|+.|.
T Consensus 198 le~~~eAl~agaDiImL-----DNm~---~e~~~~av~~l~~-~~~~~lEa--SGg-It~~ni~~yA~tGVD~IS~ga 263 (280)
T COG0157 198 LEEAEEALEAGADIIML-----DNMS---PEELKEAVKLLGL-AGRALLEA--SGG-ITLENIREYAETGVDVISVGA 263 (280)
T ss_pred HHHHHHHHHcCCCEEEe-----cCCC---HHHHHHHHHHhcc-CCceEEEE--eCC-CCHHHHHHHhhcCCCEEEeCc
Confidence 45667777889998888 4455 4778887777632 23456665 344 489999999999999998764
No 389
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=78.59 E-value=17 Score=31.18 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=46.1
Q ss_pred HHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CC--------C------HH
Q 018731 199 VETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GE--------S------DD 263 (351)
Q Consensus 199 l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gE--------t------~e 263 (351)
++.++++|++.|.+.......... . ....-+..+.+++ .|+.+.+...... .. + .+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~-----~--~~~~~~~~~~~~~--~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 71 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE-----K--DDEAEELRRLLED--YGLKIASLHPPTNFWSPDEENGSANDEREEALE 71 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH-----H--HHHHHHHHHHHHH--TTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCccccc-----c--hHHHHHHHHHHHH--cCCeEEEEecccccccccccccCcchhhHHHHH
Confidence 467888999988765433222111 0 2333444455566 8988544333222 22 2 67
Q ss_pred HHHHHHHHHHhCCCCEEeee
Q 018731 264 DLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 264 ~~~~~l~~l~~lg~d~i~i~ 283 (351)
.+.+.++.++.+|+..+.+.
T Consensus 72 ~~~~~i~~a~~lg~~~i~~~ 91 (213)
T PF01261_consen 72 YLKKAIDLAKRLGAKYIVVH 91 (213)
T ss_dssp HHHHHHHHHHHHTBSEEEEE
T ss_pred HHHHHHHHHHHhCCCceeec
Confidence 88888888899999888774
No 390
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=78.56 E-value=85 Score=32.35 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=77.0
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh-C--CCcEEEEeecCCCCC-HHHHHHHHHc
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ-K--PDIMVECLTSDFRGD-LRAVETLVHS 205 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~-~--p~i~i~~~~~~~~~~-~e~l~~L~~a 205 (351)
.+++++-+++++.+.+.|+++|=.+ .|. .. ..++.. ++.+.+. . ++..+.++++....+ +..++.+..+
T Consensus 44 ~~s~e~Ki~ia~~L~~~Gvd~IE~G--fp~-~s---~~D~e~-v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~ 116 (564)
T TIGR00970 44 PMSPARKRRYFDLLVRIGFKEIEVG--FPS-AS---QTDFDF-VREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGA 116 (564)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--CCC-CC---HHHHHH-HHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCC
Confidence 3677888899999999999998774 331 12 234333 3333333 1 256777766543211 2334444444
Q ss_pred CCCeeecchhchHHHH-hhhcCCCCCHHHHH----HHHHHHHHhCCCCe----EEEeeeeeC-CC----C-HHHHHHHHH
Q 018731 206 GLDVFAHNIETVKRLQ-RIVRDPRAGYEQSL----EVLKHAKLSKKGLI----TKSSIMLGL-GE----S-DDDLKEAMA 270 (351)
Q Consensus 206 G~~~i~~~ies~~~~~-~~~r~~~~~~~~~l----~~i~~~~~~~~Gi~----v~~~~IvGl-gE----t-~e~~~~~l~ 270 (351)
+...|.+.+-+.+-.. ..+ +.+.++.+ +.++.+++ .|.. +.+.+.+-+ +| + .+-+.+.++
T Consensus 117 ~~~~v~i~~~~Sd~h~~~~l---~~s~ee~l~~~~~~v~~ak~--~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~ 191 (564)
T TIGR00970 117 KRATVHFYNATSILFREVVF---RASRAEVQAIATDGTKLVRK--CTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCE 191 (564)
T ss_pred CCCEEEEEEcCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHH--hcccccccccceEEEEEecccCCCCCHHHHHHHHH
Confidence 4446777665555432 223 23555544 45666677 5542 233233333 55 4 577788888
Q ss_pred HHHhCCCC
Q 018731 271 DLRSIDVD 278 (351)
Q Consensus 271 ~l~~lg~d 278 (351)
.+.+.|.+
T Consensus 192 ~a~~ag~~ 199 (564)
T TIGR00970 192 AVKEVWAP 199 (564)
T ss_pred HHHHhCCC
Confidence 88999764
No 391
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=78.53 E-value=11 Score=34.94 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=50.3
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEec--cCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltg--g~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~ 207 (351)
..+.+.+.+.++.+.+.|++.|++.| |+...|. .+.-.++++.+.+...++-+.+.+......-+.++...++|.
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt---~eEr~~l~~~~~~~~~~vi~gvg~~~~~~ai~~a~~a~~~Ga 92 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLS---FQEKLELLKAYSDITDKVIFQVGSLNLEESIELARAAKSFGI 92 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCC---HHHHHHHHHHHHHHcCCEEEEeCcCCHHHHHHHHHHHHHcCC
Confidence 46677888999999999999998865 4444455 356666776665543233222211111112366677778899
Q ss_pred Ceeec
Q 018731 208 DVFAH 212 (351)
Q Consensus 208 ~~i~~ 212 (351)
|.+.+
T Consensus 93 d~v~v 97 (279)
T cd00953 93 YAIAS 97 (279)
T ss_pred CEEEE
Confidence 98754
No 392
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=78.42 E-value=32 Score=32.64 Aligned_cols=53 Identities=6% Similarity=0.103 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCeeec-chhchHHHHhhhcCCCCCHHHHHHHHHHH----HHhCCCCe
Q 018731 197 RAVETLVHSGLDVFAH-NIETVKRLQRIVRDPRAGYEQSLEVLKHA----KLSKKGLI 249 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~-~ies~~~~~~~~r~~~~~~~~~l~~i~~~----~~~~~Gi~ 249 (351)
+.++.+.+.|+|.+.+ ++++.....+--.+.....++.++.++.+ |+.++++.
T Consensus 151 ~rl~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~ 208 (315)
T TIGR01370 151 SYLDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFV 208 (315)
T ss_pred HHHHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEE
Confidence 4588888999999987 45554322110000122345556666555 76555554
No 393
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=78.37 E-value=58 Score=30.28 Aligned_cols=138 Identities=16% Similarity=0.153 Sum_probs=84.5
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+-+...++.+.+.+..-|.-.+... ....+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.+....++|++.|-
T Consensus 22 n~e~~~avi~AAe~~~sPvIi~~~~~~--~~~~~~~~~~~~~~~~a~~~-~VPV~l-HLDH~~~~~~i~~ai~~GftSVM 97 (276)
T cd00947 22 NLETLKAILEAAEETRSPVILQISEGA--IKYAGLELLVAMVKAAAERA-SVPVAL-HLDHGSSFELIKRAIRAGFSSVM 97 (276)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcch--hhhCCHHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHhCCCEEE
Confidence 345566677777777777555443222 22223678888888877654 445433 33433478888999999999986
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eeeeeCCCC-------HHHHHHHHHHHHhCCCCEEee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SIMLGLGES-------DDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~IvGlgEt-------~e~~~~~l~~l~~lg~d~i~i 282 (351)
+.--.++ + ..+.+...+.++.++. .|+.|.+ +-|-|-.+. .-+..+..+|+++.|+|.+.+
T Consensus 98 iD~S~l~-~-------eeNi~~t~~vv~~ah~--~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAv 167 (276)
T cd00947 98 IDGSHLP-F-------EENVAKTKEVVELAHA--YGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAV 167 (276)
T ss_pred eCCCCCC-H-------HHHHHHHHHHHHHHHH--cCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEe
Confidence 6321111 1 1234445577888888 7887654 445443111 124577888999999998777
Q ss_pred e
Q 018731 283 G 283 (351)
Q Consensus 283 ~ 283 (351)
.
T Consensus 168 s 168 (276)
T cd00947 168 A 168 (276)
T ss_pred c
Confidence 3
No 394
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.24 E-value=13 Score=34.81 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++++.++.+.|++.|.| |.++ .+.+.+.++.++. .+.+++ .++ .+.+.+..+++.|+|.|+.|.
T Consensus 215 leea~eA~~aGaDiImL-----Dnms---pe~l~~av~~~~~---~~~lEa--SGG-It~~ni~~yA~tGVD~IS~ga 278 (294)
T PRK06978 215 LAQLETALAHGAQSVLL-----DNFT---LDMMREAVRVTAG---RAVLEV--SGG-VNFDTVRAFAETGVDRISIGA 278 (294)
T ss_pred HHHHHHHHHcCCCEEEE-----CCCC---HHHHHHHHHhhcC---CeEEEE--ECC-CCHHHHHHHHhcCCCEEEeCc
Confidence 45666677889998888 3454 4677787776643 345555 444 499999999999999998763
No 395
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=78.15 E-value=13 Score=34.89 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.+++.++.+.|++.|.| |.++ .+.+.++++.++. .+.+++ .++ .+.+.+..+++.|+|.|+.|
T Consensus 218 leea~ea~~~gaDiI~L-----Dn~s---~e~~~~av~~~~~---~~~iea--SGG-I~~~ni~~yA~tGVD~Is~g 280 (296)
T PRK09016 218 LDELDQALKAGADIIML-----DNFT---TEQMREAVKRTNG---RALLEV--SGN-VTLETLREFAETGVDFISVG 280 (296)
T ss_pred HHHHHHHHHcCCCEEEe-----CCCC---hHHHHHHHHhhcC---CeEEEE--ECC-CCHHHHHHHHhcCCCEEEeC
Confidence 45666777889988887 3344 3677787776643 455655 444 49999999999999999876
No 396
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=78.13 E-value=12 Score=33.78 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=59.7
Q ss_pred CHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee-------eeeC-CCC-----
Q 018731 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI-------MLGL-GES----- 261 (351)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-------IvGl-gEt----- 261 (351)
-.|.+..-+++|+|.|-++++-.|+...++ .-+-+++++.++.+.+ .|+.+.+-. .+|- .++
T Consensus 20 W~erl~~AK~~GFDFvEmSvDEsDeRLaRL---DWs~~er~~l~~ai~e--tgv~ipSmClSaHRRfPfGS~D~~~r~~a 94 (287)
T COG3623 20 WLERLALAKELGFDFVEMSVDESDERLARL---DWSKEERLALVNAIQE--TGVRIPSMCLSAHRRFPFGSKDEATRQQA 94 (287)
T ss_pred HHHHHHHHHHcCCCeEEEeccchHHHHHhc---CCCHHHHHHHHHHHHH--hCCCccchhhhhhccCCCCCCCHHHHHHH
Confidence 478999999999999999987666532211 4578899999999998 888765443 3443 222
Q ss_pred HHHHHHHHHHHHhCCCCEEee
Q 018731 262 DDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 262 ~e~~~~~l~~l~~lg~d~i~i 282 (351)
.+-+.+.+.+.+++|+..|.+
T Consensus 95 leiM~KaI~LA~dLGIRtIQL 115 (287)
T COG3623 95 LEIMEKAIQLAQDLGIRTIQL 115 (287)
T ss_pred HHHHHHHHHHHHHhCceeEee
Confidence 234466777888999988876
No 397
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=78.07 E-value=67 Score=30.89 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=101.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
..+.+...++++.+.+..-|.-++... ....+.+.+..+++.+.+..+++.|.+ .-|.-.+.+.+..-.++|+++|-
T Consensus 27 n~e~~~avi~AAEe~~sPvIlq~s~~~--~~~~g~~~~~~~v~~~ae~~~~VPVaL-HLDHg~~~e~i~~Ai~~GFtSVM 103 (347)
T PRK13399 27 NMEQILAIMEAAEATDSPVILQASRGA--RKYAGDAMLRHMVLAAAEMYPDIPICL-HQDHGNSPATCQSAIRSGFTSVM 103 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcch--hhhCCHHHHHHHHHHHHHhcCCCcEEE-ECCCCCCHHHHHHHHhcCCCEEE
Confidence 456667777777777777665544322 222346778888888887654455533 33443478899999999999987
Q ss_pred cchhchHHHHhhhcCCCC----CHHHHHHHHHHHHHhCCCCeEEEee--eeeCC-------CC------------HHHHH
Q 018731 212 HNIETVKRLQRIVRDPRA----GYEQSLEVLKHAKLSKKGLITKSSI--MLGLG-------ES------------DDDLK 266 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~----~~~~~l~~i~~~~~~~~Gi~v~~~~--IvGlg-------Et------------~e~~~ 266 (351)
+.--.+++ .. ... +.+...+.++.++. .|+.|.+-+ |-|.. +. .-+-.
T Consensus 104 iDgS~l~~--~~---~~~~~eeNI~~Trevve~Ah~--~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~Pe 176 (347)
T PRK13399 104 MDGSLLAD--GK---TPASYDYNVDVTRRVTEMAHA--VGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPD 176 (347)
T ss_pred EeCCCCCC--CC---CccCHHHHHHHHHHHHHHHHH--cCCeEEEEeeeccCcccccccccCCccccccccccccCCCHH
Confidence 64221211 00 012 33344567777888 888876543 32111 10 12357
Q ss_pred HHHHHHHhCCCCEEeeecccCCCCCccc-ccCCCCHHHHHHHHHHHHhc-CcceeccC
Q 018731 267 EAMADLRSIDVDILTLGQYLQPTPLHLT-VKEYVTPEKFDFWKAYGESI-GFRYVASG 322 (351)
Q Consensus 267 ~~l~~l~~lg~d~i~i~~~l~PTp~~~~-~~~~v~~~e~~~~~~~~~~~-G~~~~~~~ 322 (351)
+..+|+++.|+|.+.+. +=.--..+.. ..+....-.+++++++.+.+ ++..+.+|
T Consensus 177 eA~~Fv~~TgvD~LAva-iGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHG 233 (347)
T PRK13399 177 QAVDFVQRTGVDALAIA-IGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHG 233 (347)
T ss_pred HHHHHHHHHCcCEEhhh-hccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeC
Confidence 78899999999987663 2111112210 00110112466777776666 56555443
No 398
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=77.65 E-value=61 Score=30.19 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=83.7
Q ss_pred chhHHHHHHHHHhCCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 133 PMEPENTAKAIASWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
.+.+..+++.+.+.+..-|+=++ |... +. ++.+.+..+++.+.+.++ +.|.+ ..|.-.+.+....-.++|++++-
T Consensus 28 lE~~~AileaA~e~~sPvIiq~S~g~~~-y~-gg~~~~~~~v~~~a~~~~-vPV~l-HlDHg~~~~~~~~ai~~GFsSvM 103 (286)
T COG0191 28 LETLQAILEAAEEEKSPVIIQFSEGAAK-YA-GGADSLAHMVKALAEKYG-VPVAL-HLDHGASFEDCKQAIRAGFSSVM 103 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccHHH-Hh-chHHHHHHHHHHHHHHCC-CCEEE-ECCCCCCHHHHHHHHhcCCceEE
Confidence 45566667777776766553322 2221 22 225778888888888775 77644 44443478999999999999886
Q ss_pred cc--hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeCC-----CC----HHHHHHHHHHHHhCCCC
Q 018731 212 HN--IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGLG-----ES----DDDLKEAMADLRSIDVD 278 (351)
Q Consensus 212 ~~--ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGlg-----Et----~e~~~~~l~~l~~lg~d 278 (351)
+. ...++ .+.....+.++.+++ .|+.|.+- .+-|.. ++ ..+..+..+++...|+|
T Consensus 104 iDgS~~~~e----------ENi~~tkevv~~ah~--~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD 171 (286)
T COG0191 104 IDGSHLPFE----------ENIAITKEVVEFAHA--YGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGID 171 (286)
T ss_pred ecCCcCCHH----------HHHHHHHHHHHHHHH--cCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcc
Confidence 52 12221 133344577778888 88876553 343331 11 34457788899999999
Q ss_pred EEee
Q 018731 279 ILTL 282 (351)
Q Consensus 279 ~i~i 282 (351)
.+.+
T Consensus 172 ~LA~ 175 (286)
T COG0191 172 ALAA 175 (286)
T ss_pred eeee
Confidence 8766
No 399
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.65 E-value=15 Score=34.41 Aligned_cols=64 Identities=19% Similarity=0.303 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+++.++.+.|++-|.| |.+. .+.+.+.++.++. .+.+++ .++ .+.+.+...++.|+|.|+.|.
T Consensus 207 leea~~a~~agaDiImL-----Dnms---pe~l~~av~~~~~---~~~lea--SGG-I~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 207 LAAAEEAAAAGADIIML-----DNMS---LEQIEQAITLIAG---RSRIEC--SGN-IDMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred HHHHHHHHHcCCCEEEE-----CCCC---HHHHHHHHHHhcC---ceEEEE--ECC-CCHHHHHHHHhcCCCEEEeCc
Confidence 46666777889998888 3344 4778888876654 345555 444 499999999999999998764
No 400
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=77.59 E-value=24 Score=30.39 Aligned_cols=73 Identities=11% Similarity=-0.010 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC---HHHHHHHHHcCCCee
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD---LRAVETLVHSGLDVF 210 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~---~e~l~~L~~aG~~~i 210 (351)
+-+.+.++.....| ..++|.|+.+ +.+.++.+.+++.+|++.|... .++... ++.++.+.++|.|-+
T Consensus 35 dl~~~l~~~~~~~~-~~vfllG~~~--------~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~~~~~i~~~I~~s~~dil 104 (177)
T TIGR00696 35 DLMEELCQRAGKEK-LPIFLYGGKP--------DVLQQLKVKLIKEYPKLKIVGA-FGPLEPEERKAALAKIARSGAGIV 104 (177)
T ss_pred HHHHHHHHHHHHcC-CeEEEECCCH--------HHHHHHHHHHHHHCCCCEEEEE-CCCCChHHHHHHHHHHHHcCCCEE
Confidence 43445666665666 4677777764 4677888899999999987654 333311 356888999999998
Q ss_pred ecchhc
Q 018731 211 AHNIET 216 (351)
Q Consensus 211 ~~~ies 216 (351)
.+++-+
T Consensus 105 ~VglG~ 110 (177)
T TIGR00696 105 FVGLGC 110 (177)
T ss_pred EEEcCC
Confidence 877533
No 401
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=77.54 E-value=23 Score=32.26 Aligned_cols=99 Identities=21% Similarity=0.193 Sum_probs=62.0
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC-CCeee
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG-LDVFA 211 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG-~~~i~ 211 (351)
..+..+.++.+.+.|+..|.+++.+..-.. .+ .-.++++.+++.. ++.+-+ .++..+.+.+..+.+.| ++.+.
T Consensus 154 ~~~~~~~~~~l~~~G~~~iivt~i~~~g~~-~g--~~~~~~~~i~~~~-~ipvia--~GGi~s~~di~~~~~~g~~dgv~ 227 (254)
T TIGR00735 154 GLDAVEWAKEVEKLGAGEILLTSMDKDGTK-SG--YDLELTKAVSEAV-KIPVIA--SGGAGKPEHFYEAFTKGKADAAL 227 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCcCcccCC-CC--CCHHHHHHHHHhC-CCCEEE--eCCCCCHHHHHHHHHcCCcceee
Confidence 456677888888999999999886642221 11 2246677777653 445433 45556888888888877 99875
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (351)
++ ..++. ...+.++.++.+ ++ .|+.+
T Consensus 228 ~g----~a~~~----~~~~~~~~~~~~---~~--~gi~~ 253 (254)
T TIGR00735 228 AA----SVFHY----REITIGEVKEYL---AE--RGIPV 253 (254)
T ss_pred Eh----HHHhC----CCCCHHHHHHHH---HH--CCCcc
Confidence 54 23332 245666555544 44 67754
No 402
>PLN02334 ribulose-phosphate 3-epimerase
Probab=77.49 E-value=19 Score=32.18 Aligned_cols=73 Identities=16% Similarity=0.261 Sum_probs=45.2
Q ss_pred HHHHHHHhCC-CcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 138 NTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 138 ~~~~~~~~~G-~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+.++.+...| +++|.+.+..++.-.........+.++.+++..++..|.+ .++. +.+.+..+.++|.+.+.++
T Consensus 129 ~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a--~GGI-~~e~i~~l~~aGad~vvvg 202 (229)
T PLN02334 129 EAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEV--DGGV-GPSTIDKAAEAGANVIVAG 202 (229)
T ss_pred HHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEE--eCCC-CHHHHHHHHHcCCCEEEEC
Confidence 3344444553 8888776555421111011344566677777655555543 4454 8999999999999999775
No 403
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=77.47 E-value=39 Score=29.64 Aligned_cols=83 Identities=11% Similarity=0.228 Sum_probs=53.3
Q ss_pred CcEEEEeccCCCCCCCCc-HHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcC
Q 018731 148 VDYIVLTSVDRDDIPDGG-SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRD 226 (351)
Q Consensus 148 ~~~I~ltgg~~~~l~~~~-~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~ 226 (351)
++-+.+-+.+|. +.... .+....=++.+++++|.+.|++ .++ +.++.++...+||.+.+-.| .. .++
T Consensus 135 ~D~vLvMtVePG-FGGQkFme~mm~KV~~lR~kyp~l~iev--DGG-v~~~ti~~~a~AGAN~iVaG----sa---vf~- 202 (224)
T KOG3111|consen 135 VDMVLVMTVEPG-FGGQKFMEDMMPKVEWLREKYPNLDIEV--DGG-VGPSTIDKAAEAGANMIVAG----SA---VFG- 202 (224)
T ss_pred ccEEEEEEecCC-CchhhhHHHHHHHHHHHHHhCCCceEEe--cCC-cCcchHHHHHHcCCCEEEec----ce---eec-
Confidence 445555566653 32100 2344455677888899988886 444 48899999999999987543 11 222
Q ss_pred CCCCHHHHHHHHHHHHH
Q 018731 227 PRAGYEQSLEVLKHAKL 243 (351)
Q Consensus 227 ~~~~~~~~l~~i~~~~~ 243 (351)
..++.++++.|+....
T Consensus 203 -a~d~~~vi~~lr~~v~ 218 (224)
T KOG3111|consen 203 -AADPSDVISLLRNSVE 218 (224)
T ss_pred -CCCHHHHHHHHHHHHh
Confidence 4577777777776654
No 404
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=77.47 E-value=39 Score=30.38 Aligned_cols=76 Identities=13% Similarity=0.200 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++.+.++.+.+. ++++++..-+. .+.. ...-.++++.+.+. +++.+.+ .++..+.+.++.+.++|++.+.+|-
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldg-a~~g--~~~n~~~i~~i~~~-~~~pv~~--gGGIrs~edv~~l~~~G~~~vivGt 103 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDG-AFEG--KPKNLDVVKNIIRE-TGLKVQV--GGGLRTYESIKDAYEIGVENVIIGT 103 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcc-hhcC--CcchHHHHHHHHhh-CCCCEEE--cCCCCCHHHHHHHHHCCCCEEEECc
Confidence 566677777776 89888854432 1211 11235566666664 3555544 5566789999999999999988774
Q ss_pred hch
Q 018731 215 ETV 217 (351)
Q Consensus 215 es~ 217 (351)
++.
T Consensus 104 aa~ 106 (228)
T PRK04128 104 KAF 106 (228)
T ss_pred hhc
Confidence 443
No 405
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=77.45 E-value=69 Score=33.23 Aligned_cols=80 Identities=16% Similarity=0.107 Sum_probs=53.0
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+++...+.++++.+.|++.|+|-.-..-.. ...+.++++.+++.++ .+.+++ +++.-+.....-...++|++.|
T Consensus 152 t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~----P~~~~~lv~~lk~~~~~pi~~H~-Hnt~Gla~An~laAv~aGad~v 226 (592)
T PRK09282 152 TIEKYVELAKELEEMGCDSICIKDMAGLLT----PYAAYELVKALKEEVDLPVQLHS-HCTSGLAPMTYLKAVEAGVDII 226 (592)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCCcC----HHHHHHHHHHHHHhCCCeEEEEE-cCCCCcHHHHHHHHHHhCCCEE
Confidence 567788999999999999999943322222 3789999999998763 134444 2222223344445568999998
Q ss_pred ecchhc
Q 018731 211 AHNIET 216 (351)
Q Consensus 211 ~~~ies 216 (351)
..++..
T Consensus 227 D~ai~g 232 (592)
T PRK09282 227 DTAISP 232 (592)
T ss_pred Eeeccc
Confidence 765543
No 406
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=77.36 E-value=16 Score=37.02 Aligned_cols=135 Identities=20% Similarity=0.251 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC-cEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~-i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
.+..+.++.+.+.|++.|.++..+. . .....+.++.+++.+|+ +.|-+ +...+.+.++.+.++|.|.|-+
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd~a~g--~----~~~~~~~i~~ir~~~~~~~~V~a---GnV~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCIDSSEG--Y----SEWQKRTLDWIREKYGDSVKVGA---GNVVDREGFRYLAEAGADFVKV 311 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeecCccc--c----cHHHHHHHHHHHHhCCCCceEEe---ccccCHHHHHHHHHcCCCEEEE
Confidence 4556778888899999999862221 2 25678999999998874 55543 2235889999999999999988
Q ss_pred chhchHH-HHhhhcCCC-CCHHHHHHHHHHH----HHhCCCCeEEEeeee--eCCCCHHHHHHHHHHHHhCCCCEEeeec
Q 018731 213 NIETVKR-LQRIVRDPR-AGYEQSLEVLKHA----KLSKKGLITKSSIML--GLGESDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 213 ~ies~~~-~~~~~r~~~-~~~~~~l~~i~~~----~~~~~Gi~v~~~~Iv--GlgEt~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
++-...- ..+...+-+ ....-..+..+.+ ++ .|..+ .+|. |+ .+--|+.+.+ .+|.|.+.++.
T Consensus 312 g~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~--~g~~~--~viadgGi-r~~gdi~KAl----a~GA~~vm~G~ 382 (502)
T PRK07107 312 GIGGGSICITREQKGIGRGQATALIEVAKARDEYFEE--TGVYI--PICSDGGI-VYDYHMTLAL----AMGADFIMLGR 382 (502)
T ss_pred CCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhh--cCCcc--eEEEcCCC-CchhHHHHHH----HcCCCeeeeCh
Confidence 7665532 112111111 1222233333322 23 35321 2222 22 3344555443 48999988875
Q ss_pred cc
Q 018731 285 YL 286 (351)
Q Consensus 285 ~l 286 (351)
.+
T Consensus 383 ~~ 384 (502)
T PRK07107 383 YF 384 (502)
T ss_pred hh
Confidence 54
No 407
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=77.33 E-value=56 Score=29.55 Aligned_cols=46 Identities=20% Similarity=0.121 Sum_probs=35.3
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
..++.+|+.+......+.|-.-+-|-+|++..+ .-+.|=++++.++
T Consensus 57 a~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiY-----gA~~EQm~~L~~~ 102 (254)
T COG2875 57 ASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIY-----GALAEQMRELEAL 102 (254)
T ss_pred CcCCHHHHHHHHHHHHHcCCeEEEeecCChhHH-----HHHHHHHHHHHHc
Confidence 347789999988888889999899999997533 3566666777765
No 408
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=76.84 E-value=23 Score=33.30 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=42.1
Q ss_pred CCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------cHHHHHHHHHHHHHhCCCcEE
Q 018731 126 RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-------GSGHFARTVKAMKKQKPDIMV 185 (351)
Q Consensus 126 ~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~-------~~~~~~~li~~ik~~~p~i~i 185 (351)
.+..+.+.+.+.++++.+.+.|++.|.|-|..++...|. .-.-+.+.++.||+.+|++.|
T Consensus 46 Pg~~r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~v 112 (320)
T cd04823 46 PGVFRLSIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGI 112 (320)
T ss_pred CCceeeCHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCCCcEE
Confidence 344455678899999999999999998887733222110 012467899999999998643
No 409
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=76.72 E-value=58 Score=29.43 Aligned_cols=164 Identities=23% Similarity=0.257 Sum_probs=90.7
Q ss_pred CCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEE-EEeecCCC-----CCHHHHHH
Q 018731 128 PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV-ECLTSDFR-----GDLRAVET 201 (351)
Q Consensus 128 ~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i-~~~~~~~~-----~~~e~l~~ 201 (351)
..+..|..+...+......|+++|-+.=-...+. +...+.+..+.+.++...++..+ .+.-.|.. ...+..+.
T Consensus 61 Dlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~~-~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~ 139 (235)
T PF04476_consen 61 DLPMKPGTASLAALGAAATGVDYVKVGLFGCKDY-DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEI 139 (235)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEEecCCCCCH-HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHH
Confidence 3344455555445555667999987731110111 11123444555666665444433 22222321 13467788
Q ss_pred HHHcCCCeeecchhchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-C-CCHHHHHHHHHHHHhCCCC
Q 018731 202 LVHSGLDVFAHNIETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G-ESDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 202 L~~aG~~~i~~~ies~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-g-Et~e~~~~~l~~l~~lg~d 278 (351)
.+++|++.+-+ +|..+-. .... --+.++.-+.++.+++ .|+ +.|+ | -..+| +..|+.+++|
T Consensus 140 a~~aG~~gvMl--DTa~Kdg~~L~d--~~~~~~L~~Fv~~ar~--~gL------~~aLAGSL~~~d----i~~L~~l~pD 203 (235)
T PF04476_consen 140 AAEAGFDGVML--DTADKDGGSLFD--HLSEEELAEFVAQARA--HGL------MCALAGSLRFED----IPRLKRLGPD 203 (235)
T ss_pred HHHcCCCEEEE--ecccCCCCchhh--cCCHHHHHHHHHHHHH--ccc------hhhccccCChhH----HHHHHhcCCC
Confidence 99999998754 4543311 1111 2377888888889998 776 4677 4 33444 4566789999
Q ss_pred EEeeecccCCCCCcccccCCCCHHHHHHHHHH
Q 018731 279 ILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAY 310 (351)
Q Consensus 279 ~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~ 310 (351)
++.|---+ ..........++++...++++.
T Consensus 204 ~lGfRGAv--C~ggdR~~G~id~~~V~~lr~~ 233 (235)
T PF04476_consen 204 ILGFRGAV--CGGGDRRAGRIDPELVAALRAL 233 (235)
T ss_pred EEEechhh--CCCCCcCccccCHHHHHHHHHh
Confidence 99983122 1111011236888888877764
No 410
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=76.70 E-value=50 Score=31.13 Aligned_cols=138 Identities=17% Similarity=0.098 Sum_probs=77.5
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCC---------CCCcHHHHHHHHHHHHHhCCCcEEEEee-c----CCCCCH
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDI---------PDGGSGHFARTVKAMKKQKPDIMVECLT-S----DFRGDL 196 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l---------~~~~~~~~~~li~~ik~~~p~i~i~~~~-~----~~~~~~ 196 (351)
.+++++.+.++.+.+.|++.|-|-.|.|..- -....+.+.++++.+++.. ++.|.+-. . +.....
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-~~pv~vKir~g~~~~~~~~~ 150 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-DIPVTVKIRIGWDDAHINAV 150 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-CCCEEEEEEcccCCCcchHH
Confidence 3577888888888888999988866654110 0012466778999998763 33333211 1 111124
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID 276 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg 276 (351)
+.++.+.++|++.|.+.-.+... ... ... .++.++.+++. .++.+- ..|=-.|.+++.+.+ +..|
T Consensus 151 ~~a~~l~~~G~d~i~vh~r~~~~---~~~-~~~----~~~~i~~i~~~-~~ipvi---~nGgI~~~~da~~~l---~~~g 215 (319)
T TIGR00737 151 EAARIAEDAGAQAVTLHGRTRAQ---GYS-GEA----NWDIIARVKQA-VRIPVI---GNGDIFSPEDAKAML---ETTG 215 (319)
T ss_pred HHHHHHHHhCCCEEEEEcccccc---cCC-Cch----hHHHHHHHHHc-CCCcEE---EeCCCCCHHHHHHHH---HhhC
Confidence 77888999999999764322111 111 111 24555555552 233321 112125566665555 4578
Q ss_pred CCEEeeec
Q 018731 277 VDILTLGQ 284 (351)
Q Consensus 277 ~d~i~i~~ 284 (351)
+|.+.++.
T Consensus 216 ad~VmigR 223 (319)
T TIGR00737 216 CDGVMIGR 223 (319)
T ss_pred CCEEEECh
Confidence 99988864
No 411
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=76.69 E-value=66 Score=30.06 Aligned_cols=140 Identities=14% Similarity=0.118 Sum_probs=84.1
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+.+.+...++.+.+.+..-|.-.+...-.+. .+.+.+..+++.+.+... .+.|.+ .-|.-.+.+.+....++|+++|
T Consensus 27 n~e~~~avi~AAee~~sPvIl~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~vPV~l-HLDHg~~~e~i~~ai~~GftSV 104 (286)
T PRK08610 27 NLEFTQAILEASQEENAPVILGVSEGAARYM-SGFYTVVKMVEGLMHDLNITIPVAI-HLDHGSSFEKCKEAIDAGFTSV 104 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccHHhhc-CcHHHHHHHHHHHHHHcCCCCCEEE-ECCCCCCHHHHHHHHHcCCCEE
Confidence 3566667777777777776654433221121 235678888888776542 234432 3343347899999999999998
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeC-CC---C---HHHHHHHHHHHHhCCCCEEe
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGL-GE---S---DDDLKEAMADLRSIDVDILT 281 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGl-gE---t---~e~~~~~l~~l~~lg~d~i~ 281 (351)
-+.--.++ + ..+.+...+.++.++. .|+.|.+- .|-|- ++ + .-+..+..+|+++.|+|.+.
T Consensus 105 M~DgS~l~-~-------eeNi~~T~~vve~Ah~--~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LA 174 (286)
T PRK08610 105 MIDASHSP-F-------EENVATTKKVVEYAHE--KGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALA 174 (286)
T ss_pred EEeCCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEE
Confidence 65311111 1 1133344577888888 88876553 34333 11 0 23567788899999999877
Q ss_pred ee
Q 018731 282 LG 283 (351)
Q Consensus 282 i~ 283 (351)
+.
T Consensus 175 va 176 (286)
T PRK08610 175 PA 176 (286)
T ss_pred ee
Confidence 63
No 412
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=76.50 E-value=41 Score=33.54 Aligned_cols=81 Identities=15% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++-+.+.++.+.+.|++.|.|..-..- +. .....++++.+++..+ +.|++- +++.-+.....-.-.++|++.
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~-l~---P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAieaGad~ 225 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKDMAGI-LT---PYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIEAGADI 225 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCC-CC---HHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHHcCCCE
Confidence 45677788999999999999999432221 22 3789999999998763 555442 222212333344456899999
Q ss_pred eecchhc
Q 018731 210 FAHNIET 216 (351)
Q Consensus 210 i~~~ies 216 (351)
|..++..
T Consensus 226 vD~sv~g 232 (448)
T PRK12331 226 IDTAISP 232 (448)
T ss_pred EEeeccc
Confidence 8665543
No 413
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=76.47 E-value=21 Score=32.66 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeee-----CC--------CCH
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG-----LG--------ESD 262 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG-----lg--------Et~ 262 (351)
++.++.++++|++.|-+.+......... ...+.++.-+.-+.+.+ .||.+.+...-+ ++ +..
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~~~~~~l~~~l~~--~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~ 93 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLAR---LDWSKEERLSLVKAIYE--TGVRIPSMCLSGHRRFPFGSRDPATRERAL 93 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCccccccc---ccCCHHHHHHHHHHHHH--cCCCceEEecccccCcCCCCCCHHHHHHHH
Confidence 5777777777777776653321110000 01233334444445556 777654321111 11 123
Q ss_pred HHHHHHHHHHHhCCCCEEee
Q 018731 263 DDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 263 e~~~~~l~~l~~lg~d~i~i 282 (351)
+.+...++..+.+|++.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 44566677777777777665
No 414
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=76.11 E-value=69 Score=29.97 Aligned_cols=139 Identities=18% Similarity=0.135 Sum_probs=83.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCC-CcHHHHHHHHHHHHHhC-CCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPD-GGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~-~~~~~~~~li~~ik~~~-p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
+.+.+...++++.+.+..-|.-.+... +.. .+.+.+..+++...+.. +.+.|.+ .-|.-.+.+.+..-.++|+++
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~--~~~~~g~~~~~~~~~~~a~~~~~~VPV~l-HLDHg~~~e~i~~ai~~GftS 103 (288)
T TIGR00167 27 NLETINAVLEAAAEEKSPVIIQFSNGA--AKYIAGLGAISAMVKAMSEAYPYGVPVAL-HLDHGASEEDCAQAVKAGFSS 103 (288)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCcch--hhccCCHHHHHHHHHHHHHhccCCCcEEE-ECCCCCCHHHHHHHHHcCCCE
Confidence 356666777777777777655443322 221 23677888887776653 2345433 334334789999999999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eeeeeCCCC---------HHHHHHHHHHHHhCCCC
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SIMLGLGES---------DDDLKEAMADLRSIDVD 278 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~IvGlgEt---------~e~~~~~l~~l~~lg~d 278 (351)
|-+.--.++ + ..+.+...+.++.++. .|+.|.+ +.|-|-.+. .-+-.+..+|+++.|+|
T Consensus 104 VMiDgS~lp-~-------eeNi~~T~~vv~~Ah~--~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 173 (288)
T TIGR00167 104 VMIDGSHEP-F-------EENIELTKKVVERAHK--MGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVD 173 (288)
T ss_pred EEecCCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCc
Confidence 865311111 1 1133344577778888 7887655 334333111 11346788899999999
Q ss_pred EEeee
Q 018731 279 ILTLG 283 (351)
Q Consensus 279 ~i~i~ 283 (351)
.+.+.
T Consensus 174 ~LAva 178 (288)
T TIGR00167 174 SLAAA 178 (288)
T ss_pred EEeec
Confidence 87773
No 415
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=75.90 E-value=14 Score=33.03 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
..+.+.++.+.+.|+.++++++.+..... .+ .-.++++.+++. .++.+. ..++..+.+.++.+++.|++.+.++
T Consensus 145 ~~~~~~~~~~~~~g~~~ii~~~~~~~g~~-~g--~~~~~i~~i~~~-~~ipvi--a~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 145 VSLEELAKRLEELGLEGIIYTDISRDGTL-SG--PNFELTKELVKA-VNVPVI--ASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeecCCCCc-CC--CCHHHHHHHHHh-CCCCEE--EeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 34556777788899999998766542221 11 125566666665 344443 3556668888889999999998775
No 416
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=75.80 E-value=27 Score=33.28 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=63.5
Q ss_pred CcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC--HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCH-HHHHHHHHH
Q 018731 164 GGSGHFARTVKAMKKQKPDIMVECLTSDFRGD--LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGY-EQSLEVLKH 240 (351)
Q Consensus 164 ~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~--~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~-~~~l~~i~~ 240 (351)
.+.+.+.+.++.+++.. +..+-+........ .+.++.+.++|+|.|.+|+-.... ....+ +.+. +.+.+.++.
T Consensus 84 ~g~d~~~~~i~~~~~~~-~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~-~~~~~--g~~~~~~~~eil~~ 159 (334)
T PRK07565 84 VGPEEYLELIRRAKEAV-DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPT-DPDIS--GAEVEQRYLDILRA 159 (334)
T ss_pred cCHHHHHHHHHHHHHhc-CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCCCc--cccHHHHHHHHHHH
Confidence 34678888888776653 44433322221111 267778888999999887632111 00111 2223 335566777
Q ss_pred HHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecc
Q 018731 241 AKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQY 285 (351)
Q Consensus 241 ~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~ 285 (351)
+++. .++.+..-+- -..+++.+.++.+.+.|+|.+.+.+-
T Consensus 160 v~~~-~~iPV~vKl~----p~~~~~~~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 160 VKSA-VSIPVAVKLS----PYFSNLANMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred HHhc-cCCcEEEEeC----CCchhHHHHHHHHHHcCCCeEEEECC
Confidence 6652 2444333321 12346778888899999998887543
No 417
>PRK14847 hypothetical protein; Provisional
Probab=75.77 E-value=76 Score=30.34 Aligned_cols=135 Identities=12% Similarity=0.072 Sum_probs=75.8
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC---CCcEEEEeecCCCCCHH----HHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK---PDIMVECLTSDFRGDLR----AVETL 202 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~---p~i~i~~~~~~~~~~~e----~l~~L 202 (351)
.+++++-+++++.+.+.|++.|-. |.| ... +.=.+.++.|.+.. .+..+.+++.. ..+ .++..
T Consensus 50 ~fs~eeKl~IA~~L~~lGVd~IEv--G~P-a~s----~~e~e~ir~I~~~~~~~~~~~i~~~~r~---~~~dId~a~e~~ 119 (333)
T PRK14847 50 PMDGARKLRLFEQLVAVGLKEIEV--AFP-SAS----QTDFDFVRKLIDERRIPDDVTIEALTQS---RPDLIARTFEAL 119 (333)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe--eCC-CCC----HHHHHHHHHHHHhCCCCCCcEEEEEecC---cHHHHHHHHHHh
Confidence 367788889999999999999877 443 233 22345666665542 14566665542 233 44444
Q ss_pred HHcCCCeeecchhchHHH-HhhhcCCCCCHHH----HHHHHHHHHHhCCCCeE---EEeeeeeC---CCCH-HHHHHHHH
Q 018731 203 VHSGLDVFAHNIETVKRL-QRIVRDPRAGYEQ----SLEVLKHAKLSKKGLIT---KSSIMLGL---GESD-DDLKEAMA 270 (351)
Q Consensus 203 ~~aG~~~i~~~ies~~~~-~~~~r~~~~~~~~----~l~~i~~~~~~~~Gi~v---~~~~IvGl---gEt~-e~~~~~l~ 270 (351)
+.++..+|.+.+-+.+-. ...++ .+.++ ..++++.+++ .|... ...+-+|. ..++ +-+.+.++
T Consensus 120 ~~~~~~~Vhi~~p~Sd~h~~~kl~---~s~~~vl~~~~~~v~~Ak~--~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~ 194 (333)
T PRK14847 120 AGSPRAIVHLYNPIAPQWRRIVFG---MSRAEIKEIALAGTRQIRA--LADANPGTQWIYEYSPETFSLAELDFAREVCD 194 (333)
T ss_pred CCCCCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH--hccccCCCceEEEEeeecCCCCCHHHHHHHHH
Confidence 444556688887776553 23332 34444 4556777887 54421 11345555 3333 44444555
Q ss_pred HHHhC-CCCE
Q 018731 271 DLRSI-DVDI 279 (351)
Q Consensus 271 ~l~~l-g~d~ 279 (351)
.+.+. |++.
T Consensus 195 ~a~~~~ga~r 204 (333)
T PRK14847 195 AVSAIWGPTP 204 (333)
T ss_pred HHHHHhCCCc
Confidence 44333 6443
No 418
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=75.66 E-value=69 Score=33.25 Aligned_cols=98 Identities=14% Similarity=0.103 Sum_probs=59.8
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+++...+.++.+.+.|++.|+|..-..-.. ...+.++++.+++.. ++.|+.- +++.-+.....-.-.++|++.|
T Consensus 153 ~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~----P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAGa~~v 227 (593)
T PRK14040 153 TLQTWVDLAKQLEDMGVDSLCIKDMAGLLK----PYAAYELVSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAGIDGV 227 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcC----HHHHHHHHHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcCCCEE
Confidence 466778888888999999999944332222 378999999999875 4444432 2222123334444568999998
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHH
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLK 239 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~ 239 (351)
...+.++-.- .. ....+..+.+++
T Consensus 228 D~ai~glG~~---~G--n~~le~vv~~L~ 251 (593)
T PRK14040 228 DTAISSMSMT---YG--HSATETLVATLE 251 (593)
T ss_pred Eecccccccc---cc--chhHHHHHHHHH
Confidence 7665443221 11 235556665553
No 419
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=75.39 E-value=42 Score=27.12 Aligned_cols=96 Identities=22% Similarity=0.187 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEE-EeecC------------CCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHH
Q 018731 166 SGHFARTVKAMKKQKPDIMVE-CLTSD------------FRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYE 232 (351)
Q Consensus 166 ~~~~~~li~~ik~~~p~i~i~-~~~~~------------~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~ 232 (351)
.+.+..+.+.+++.+|+..|. +++.. ...-++.++.|.+.|+++|.+- +++ .+ ++..++
T Consensus 16 ~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~-----Pl~-l~--~G~e~~ 87 (127)
T cd03412 16 EKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQ-----SLH-II--PGEEYE 87 (127)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEE-----eCe-eE--CcHHHH
Confidence 467888888998889987765 33320 1112567777777777776431 111 11 233455
Q ss_pred HHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHH
Q 018731 233 QSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLR 273 (351)
Q Consensus 233 ~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~ 273 (351)
+..+.++.++. ++..+..+--+ +.+.+|....+..+.
T Consensus 88 di~~~v~~~~~--~~~~i~~g~pL--l~~~~d~~~v~~al~ 124 (127)
T cd03412 88 KLKREVDAFKK--GFKKIKLGRPL--LYSPEDYEEVAAALK 124 (127)
T ss_pred HHHHHHHHHhC--CCceEEEccCC--CCCHHHHHHHHHHHH
Confidence 55555555543 44333222221 455666666655543
No 420
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=75.28 E-value=33 Score=31.91 Aligned_cols=82 Identities=21% Similarity=0.123 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID 276 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg 276 (351)
+.++.+.++|+|.|-+|+-+.....+ -..-..+.+...+.++.+++.. ++.+.. -++-+.++..+.++.+.+.|
T Consensus 106 ~~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~~~-~~Pv~v----Kl~~~~~~~~~~a~~~~~~G 179 (296)
T cd04740 106 EVAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKKAT-DVPVIV----KLTPNVTDIVEIARAAEEAG 179 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHhcc-CCCEEE----EeCCCchhHHHHHHHHHHcC
Confidence 56777788888888776544221100 0001245677777787877721 444332 23334457888889999999
Q ss_pred CCEEeeec
Q 018731 277 VDILTLGQ 284 (351)
Q Consensus 277 ~d~i~i~~ 284 (351)
+|.+.+.+
T Consensus 180 ~d~i~~~n 187 (296)
T cd04740 180 ADGLTLIN 187 (296)
T ss_pred CCEEEEEC
Confidence 99887643
No 421
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=75.21 E-value=17 Score=33.01 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=76.8
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+.+.++...+.|++.+++..-+. .. .+ ...=.++++.|.+.. +..+.+ .+++.+.+.++.|.++|++++.
T Consensus 29 y~~~P~~~a~~~~~~Ga~~lHlVDLdg-A~-~g-~~~n~~~i~~i~~~~-~~~vQv--GGGIRs~~~v~~ll~~G~~rVi 102 (241)
T COG0106 29 YSDDPLEVAKKWSDQGAEWLHLVDLDG-AK-AG-GPRNLEAIKEILEAT-DVPVQV--GGGIRSLEDVEALLDAGVARVI 102 (241)
T ss_pred ecCCHHHHHHHHHHcCCcEEEEeeccc-cc-cC-CcccHHHHHHHHHhC-CCCEEe--eCCcCCHHHHHHHHHCCCCEEE
Confidence 446788889999999999888744332 11 01 112245566666543 345554 5677799999999999999998
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeee------eC-CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML------GL-GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv------Gl-gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
++.-.. .+++...+.++..- -.+.+..+.=- |- ..|.-++.+.++.+.+.|+..+-+.
T Consensus 103 iGt~av-----------~~p~~v~~~~~~~g---~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~T 167 (241)
T COG0106 103 IGTAAV-----------KNPDLVKELCEEYG---DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYT 167 (241)
T ss_pred Eeccee-----------cCHHHHHHHHHHcC---CcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEE
Confidence 763221 13333333332211 11112222222 22 2333367788888888998876653
No 422
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=75.18 E-value=61 Score=28.98 Aligned_cols=124 Identities=21% Similarity=0.291 Sum_probs=69.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+.....++++++.+.|++.+.+-=-+....++ ..-=..+++.+++.. --+.++....+ -+..++.+.++|.+.|
T Consensus 14 D~~~l~~el~~~~~agad~iH~DVMDghFVPN--iTfGp~~v~~l~~~t~~p~DvHLMV~~---p~~~i~~fa~agad~I 88 (220)
T COG0036 14 DFARLGEELKALEAAGADLIHIDVMDGHFVPN--ITFGPPVVKALRKITDLPLDVHLMVEN---PDRYIEAFAKAGADII 88 (220)
T ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCcCCC--cccCHHHHHHHhhcCCCceEEEEecCC---HHHHHHHHHHhCCCEE
Confidence 34566778888888999988774333222232 111235666777642 12345544321 3578999999999999
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
++..|+... ..++++.+|+ .|.+ +++.+-.+-..+.+...+. .+|.+.++
T Consensus 89 t~H~E~~~~--------------~~r~i~~Ik~--~G~k--aGv~lnP~Tp~~~i~~~l~-----~vD~VllM 138 (220)
T COG0036 89 TFHAEATEH--------------IHRTIQLIKE--LGVK--AGLVLNPATPLEALEPVLD-----DVDLVLLM 138 (220)
T ss_pred EEEeccCcC--------------HHHHHHHHHH--cCCe--EEEEECCCCCHHHHHHHHh-----hCCEEEEE
Confidence 998873211 1245556666 6764 4444432222333333333 25666664
No 423
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=75.17 E-value=36 Score=29.02 Aligned_cols=71 Identities=10% Similarity=0.192 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCC---CCHHHHHHHHHcCCCeeecc
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR---GDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~---~~~e~l~~L~~aG~~~i~~~ 213 (351)
.+.++.+...|. .|+|.|+.+ +.+.++.+.+++.+|++.|....+... .+++.++.+.++|.|.+.++
T Consensus 38 ~~l~~~~~~~~~-~ifllG~~~--------~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 38 PDLLRRAEQRGK-RIFLLGGSE--------EVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVG 108 (172)
T ss_pred HHHHHHHHHcCC-eEEEEeCCH--------HHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 344444444444 677777764 567788889999999998865433322 23578888999999999887
Q ss_pred hhc
Q 018731 214 IET 216 (351)
Q Consensus 214 ies 216 (351)
+-+
T Consensus 109 lG~ 111 (172)
T PF03808_consen 109 LGA 111 (172)
T ss_pred CCC
Confidence 543
No 424
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=75.05 E-value=73 Score=29.75 Aligned_cols=133 Identities=15% Similarity=0.150 Sum_probs=73.9
Q ss_pred CCcEEEEeccCC---CCCCCCc---HHHHHHHHHHHHHhCCCcEEEEeecCCCCCH----HHHHHHHHcCCCeeecchhc
Q 018731 147 GVDYIVLTSVDR---DDIPDGG---SGHFARTVKAMKKQKPDIMVECLTSDFRGDL----RAVETLVHSGLDVFAHNIET 216 (351)
Q Consensus 147 G~~~I~ltgg~~---~~l~~~~---~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~----e~l~~L~~aG~~~i~~~ies 216 (351)
|++-++++|..- --++|.+ ++.+.+.++.|.... .+.|.+=..++ .++ ..++.+.++|+..|++-=++
T Consensus 38 Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~-~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~ 115 (285)
T TIGR02320 38 GFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVT-TKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKL 115 (285)
T ss_pred CcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhc-CCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccC
Confidence 899888877320 0023322 455666666665542 33432211223 343 55888999999988773222
Q ss_pred hHHHHhhhcC----CCCCHHHHHHHHHHHHHhC--CCCeEEE--eeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 217 VKRLQRIVRD----PRAGYEQSLEVLKHAKLSK--KGLITKS--SIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 217 ~~~~~~~~r~----~~~~~~~~l~~i~~~~~~~--~Gi~v~~--~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.....-.+.+ +-.+.++..+.|+.+++.. ..+.+.+ +..++ ++..++..+-.+...+.|.|.+.+
T Consensus 116 ~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~-~~~~~eAi~Ra~ay~eAGAD~ifv 188 (285)
T TIGR02320 116 GLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLIL-GKGMEDALKRAEAYAEAGADGIMI 188 (285)
T ss_pred CCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccc-cCCHHHHHHHHHHHHHcCCCEEEe
Confidence 2221000110 1237788888888887732 2233322 22221 345677777778888999999887
No 425
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=74.85 E-value=23 Score=32.84 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCe-EEEeeeeeCC-CCHHHHHHHHHHHHh
Q 018731 229 AGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLG-ESDDDLKEAMADLRS 274 (351)
Q Consensus 229 ~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGlg-Et~e~~~~~l~~l~~ 274 (351)
.+.++.++..+.+.+ .|.. +-..-.+-+. -+.+++.+....+.+
T Consensus 75 ~~~~~ai~~a~~a~~--~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~ 120 (279)
T cd00953 75 LNLEESIELARAAKS--FGIYAIASLPPYYFPGIPEEWLIKYFTDISS 120 (279)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh
Confidence 466777777777777 6664 1111111112 356667677666666
No 426
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=74.84 E-value=19 Score=32.84 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=72.4
Q ss_pred CcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCC--------CCHHHHHHHHHcCCCeeecchhchHH
Q 018731 148 VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR--------GDLRAVETLVHSGLDVFAHNIETVKR 219 (351)
Q Consensus 148 ~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~--------~~~e~l~~L~~aG~~~i~~~ies~~~ 219 (351)
++.+-|.+|+...++ .+.+.+.++..+++ ++.+.. .+.. .-++.++..++.|++.|-++-=|.
T Consensus 38 ID~~K~g~Gt~~l~~---~~~l~eki~l~~~~--gV~v~~--GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti-- 108 (244)
T PF02679_consen 38 IDFLKFGWGTSALYP---EEILKEKIDLAHSH--GVYVYP--GGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTI-- 108 (244)
T ss_dssp -SEEEE-TTGGGGST---CHHHHHHHHHHHCT--T-EEEE---HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS--
T ss_pred ccEEEecCceeeecC---HHHHHHHHHHHHHc--CCeEeC--CcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCce--
Confidence 788999888854444 26788888888876 555431 1100 136899999999999996652221
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-------CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 220 LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-------GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 220 ~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-------gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.-+.+++.+.|+.+++ .|+.|.+- +|- ..+.+++.+.++.-.+.|++.|.+
T Consensus 109 --------~l~~~~r~~~I~~~~~--~Gf~v~~E--vG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 166 (244)
T PF02679_consen 109 --------DLPEEERLRLIRKAKE--EGFKVLSE--VGKKDPESDFSLDPEELIEQAKRDLEAGADKVII 166 (244)
T ss_dssp -----------HHHHHHHHHHHCC--TTSEEEEE--ES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE
T ss_pred --------eCCHHHHHHHHHHHHH--CCCEEeec--ccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEE
Confidence 2366778889999998 99986654 343 134566777777777889998877
No 427
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.74 E-value=18 Score=33.62 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++++.++.+.|++.|.| |.++ .+.+.+.++.++.. ..+++ .++ .+.+.+...++.|+|.|+.|.
T Consensus 203 lee~~ea~~~gaDiImL-----Dn~s---~e~l~~av~~~~~~---~~lea--SGg-I~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 203 LDQIEPVLAAGVDTIML-----DNFS---LDDLREGVELVDGR---AIVEA--SGN-VNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred HHHHHHHHhcCCCEEEE-----CCCC---HHHHHHHHHHhCCC---eEEEE--ECC-CCHHHHHHHHhcCCCEEEeCc
Confidence 35556666789988887 4454 47888888877643 35555 344 499999999999999998763
No 428
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.73 E-value=19 Score=33.47 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+++.++.+.|++.|.+ + .+. .+.+.++++.++ +++.+++ .++ ++.+.+..++++|+|.|+.|.
T Consensus 199 leea~eA~~~gaD~I~L--D---~~~---~e~l~~~v~~~~---~~i~leA--sGG-It~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 199 LDELRQALAAGADIVML--D---ELS---LDDMREAVRLTA---GRAKLEA--SGG-INESTLRVIAETGVDYISIGA 262 (277)
T ss_pred HHHHHHHHHcCCCEEEE--C---CCC---HHHHHHHHHHhC---CCCcEEE--ECC-CCHHHHHHHHHcCCCEEEECh
Confidence 45566667889999877 1 133 467777776553 3556655 344 389999999999999998764
No 429
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=74.61 E-value=46 Score=27.30 Aligned_cols=73 Identities=14% Similarity=0.002 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEeecC---CCCCHHHHHHHHHcCC
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSD---FRGDLRAVETLVHSGL 207 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~~~---~~~~~e~l~~L~~aG~ 207 (351)
+++++.+ .+.+.+++.|.++.-... ....+.++++.+++.. +++.+-+-... .....+..+.+++.|+
T Consensus 42 p~e~i~~---~a~~~~~d~V~lS~~~~~-----~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~ 113 (137)
T PRK02261 42 SQEEFID---AAIETDADAILVSSLYGH-----GEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF 113 (137)
T ss_pred CHHHHHH---HHHHcCCCEEEEcCcccc-----CHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCC
Confidence 3455544 445667888887654432 1367888888888873 35554331111 1113466788999999
Q ss_pred Ceeec
Q 018731 208 DVFAH 212 (351)
Q Consensus 208 ~~i~~ 212 (351)
+.+..
T Consensus 114 ~~vf~ 118 (137)
T PRK02261 114 DRVFP 118 (137)
T ss_pred CEEEC
Confidence 98754
No 430
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=74.35 E-value=62 Score=28.61 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=69.3
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhch
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV 217 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~ 217 (351)
+.++.+.+.|++.|.+.+...+ .++ .+.+.++++.+++. +++.+-+.+ .+.+.+..+.++|+|.+.++.-..
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~-~p~--~~~~~~~i~~~~~~-~~i~vi~~v----~t~ee~~~a~~~G~d~i~~~~~g~ 150 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRP-RPD--GETLAELVKRIKEY-PGQLLMADC----STLEEGLAAQKLGFDFIGTTLSGY 150 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC-CCC--CCCHHHHHHHHHhC-CCCeEEEeC----CCHHHHHHHHHcCCCEEEcCCcee
Confidence 4567778899996665433210 111 03566788888875 566553311 266778899999999886532111
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCC-CHHHHHHHHHHHHhCCCCEEeeecc
Q 018731 218 KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGE-SDDDLKEAMADLRSIDVDILTLGQY 285 (351)
Q Consensus 218 ~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgE-t~e~~~~~l~~l~~lg~d~i~i~~~ 285 (351)
... .... .... .+.++.+++. .+ .-++.+.|- |.+++.+. .+.|+|.+.++..
T Consensus 151 t~~-~~~~-~~~~----~~~i~~i~~~-~~----iPvia~GGI~t~~~~~~~----l~~GadgV~iGsa 204 (221)
T PRK01130 151 TEE-TKKP-EEPD----FALLKELLKA-VG----CPVIAEGRINTPEQAKKA----LELGAHAVVVGGA 204 (221)
T ss_pred ecC-CCCC-CCcC----HHHHHHHHHh-CC----CCEEEECCCCCHHHHHHH----HHCCCCEEEEchH
Confidence 110 0000 1112 3455555551 13 335555555 67776654 3478998888643
No 431
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=74.28 E-value=71 Score=29.28 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=74.5
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
...+.+.++.+...|+.-+.+..- +. +..++ .+.++.+++.. ++.| +..+|..++.+++..+++|.|.|.+
T Consensus 69 ~~~~~~~A~~~~~~GA~aisvlte-~~-~f~g~----~~~l~~v~~~v-~iPv--l~kdfi~~~~qi~~a~~~GAD~VlL 139 (260)
T PRK00278 69 DFDPVEIAKAYEAGGAACLSVLTD-ER-FFQGS----LEYLRAARAAV-SLPV--LRKDFIIDPYQIYEARAAGADAILL 139 (260)
T ss_pred CCCHHHHHHHHHhCCCeEEEEecc-cc-cCCCC----HHHHHHHHHhc-CCCE--EeeeecCCHHHHHHHHHcCCCEEEE
Confidence 346678888888899988865332 22 33333 34455566542 3333 2367888888999999999999977
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
....+ +.++..+.++.+++ .|+.+-..+ .|.+|+.. +.++|++.+.++
T Consensus 140 i~~~l------------~~~~l~~li~~a~~--lGl~~lvev-----h~~~E~~~----A~~~gadiIgin 187 (260)
T PRK00278 140 IVAAL------------DDEQLKELLDYAHS--LGLDVLVEV-----HDEEELER----ALKLGAPLIGIN 187 (260)
T ss_pred EeccC------------CHHHHHHHHHHHHH--cCCeEEEEe-----CCHHHHHH----HHHcCCCEEEEC
Confidence 53221 22455566677777 776543322 35555533 457788888874
No 432
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=74.23 E-value=68 Score=29.02 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=74.7
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+.+.++.+.+.|++.+.+ ++++-.-.++..++++.+++..-...+ +.+|.. +.+.++.+.+..-..+.+++
T Consensus 89 ~~~~~i~~~~~~Gadgvii-----~dlp~e~~~~~~~~~~~~~~~Gl~~~~-~v~p~T--~~e~l~~~~~~~~~~l~msv 160 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLF-----PDLLIDYPDDLEKYVEIIKNKGLKPVF-FTSPKF--PDLLIHRLSKLSPLFIYYGL 160 (244)
T ss_pred CHHHHHHHHHHcCCCEEEE-----CCCCCCcHHHHHHHHHHHHHcCCCEEE-EECCCC--CHHHHHHHHHhCCCEEEEEe
Confidence 4455677778899999988 233311125778889999987433233 334432 56788887777555554443
Q ss_pred hchHHHHhhhcCCCCC-HHHHHHHHHHHHHhCCCCeEEEeeeeeCCC-CHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 215 ETVKRLQRIVRDPRAG-YEQSLEVLKHAKLSKKGLITKSSIMLGLGE-SDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 215 es~~~~~~~~r~~~~~-~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgE-t~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
+... +.+ ..+..+.++.+++.... ..+++|+|= |.+++. .+.+.|+|.+-++..+
T Consensus 161 ~~~~---------g~~~~~~~~~~i~~lr~~~~~----~~i~v~gGI~~~e~i~----~~~~~gaD~vvvGSai 217 (244)
T PRK13125 161 RPAT---------GVPLPVSVERNIKRVRNLVGN----KYLVVGFGLDSPEDAR----DALSAGADGVVVGTAF 217 (244)
T ss_pred CCCC---------CCCchHHHHHHHHHHHHhcCC----CCEEEeCCcCCHHHHH----HHHHcCCCEEEECHHH
Confidence 2211 111 22334466666652222 247789877 777664 4456899988776443
No 433
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=74.08 E-value=63 Score=30.78 Aligned_cols=85 Identities=13% Similarity=0.136 Sum_probs=48.0
Q ss_pred CHHHHHHHHHcCCCeeecchhchHH-HHhhhcC-CCCCHHHHHHHHHHHHHhCCCCe-EEEeeeee-CCCCHHHHHHHHH
Q 018731 195 DLRAVETLVHSGLDVFAHNIETVKR-LQRIVRD-PRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLG-LGESDDDLKEAMA 270 (351)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~-~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvG-lgEt~e~~~~~l~ 270 (351)
|-.....+-++|+|.|.++ +|+-. .+ ...+ -.-+.++.+...+.+++. .... +-+|+-+| ++++.++..+...
T Consensus 44 D~~sA~i~d~aGvD~ILVG-DSlgmv~l-G~~~T~~Vtld~mi~H~~aV~Rg-a~~a~vVaDmPfgSY~~s~e~av~nA~ 120 (332)
T PLN02424 44 DYPSAVHVDSAGIDVCLVG-DSAAMVVH-GHDTTLPITLDEMLVHCRAVARG-ANRPLLVGDLPFGSYESSTDQAVESAV 120 (332)
T ss_pred CHHHHHHHHHcCCCEEEEC-CcHHHHhc-CCCCCCCcCHHHHHHHHHHHhcc-CCCCEEEeCCCCCCCCCCHHHHHHHHH
Confidence 5677788888888888765 22211 11 0000 134677777777666541 1122 44477777 4667766665555
Q ss_pred HH-HhCCCCEEee
Q 018731 271 DL-RSIDVDILTL 282 (351)
Q Consensus 271 ~l-~~lg~d~i~i 282 (351)
.+ ++.|++.|.+
T Consensus 121 rl~~eaGa~aVKl 133 (332)
T PLN02424 121 RMLKEGGMDAVKL 133 (332)
T ss_pred HHHHHhCCcEEEE
Confidence 44 5667665544
No 434
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=74.01 E-value=87 Score=30.14 Aligned_cols=180 Identities=15% Similarity=0.094 Sum_probs=100.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
..+.+...++++.+.+..-|.-.+.....+ .+.+.+..+++...+..+.+.|.+ .-|.-.+.+.+..-.++|+++|-
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~s~~~~~~--~g~~~~~~~~~~~a~~~~~VPVal-HLDHg~~~e~i~~ai~~GftSVM 103 (347)
T PRK09196 27 NLEQVQAIMEAADETDSPVILQASAGARKY--AGEPFLRHLILAAVEEYPHIPVVM-HQDHGNSPATCQRAIQLGFTSVM 103 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHhhh--CCHHHHHHHHHHHHHhCCCCcEEE-ECCCCCCHHHHHHHHHcCCCEEE
Confidence 356667777777777777665443322112 235678888888877654455533 33433478899999999999986
Q ss_pred cchhchHHHHhhhcCCCC----CHHHHHHHHHHHHHhCCCCeEEEee--eeeCC------C------C-------HHHHH
Q 018731 212 HNIETVKRLQRIVRDPRA----GYEQSLEVLKHAKLSKKGLITKSSI--MLGLG------E------S-------DDDLK 266 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~----~~~~~l~~i~~~~~~~~Gi~v~~~~--IvGlg------E------t-------~e~~~ 266 (351)
+.--.+.+ .. ... +.+...++++.++. .|+.|.+-+ +-|.. + . .-+-.
T Consensus 104 iDgS~l~~---~~--~~~p~eENI~~Tkevve~Ah~--~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~Pe 176 (347)
T PRK09196 104 MDGSLKAD---GK--TPASYEYNVDVTRKVVEMAHA--CGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPE 176 (347)
T ss_pred ecCCCCcc---cC--CCCCHHHHHHHHHHHHHHHHH--cCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHH
Confidence 63211110 00 011 33344567777888 888876543 32221 0 0 12467
Q ss_pred HHHHHHHhCCCCEEeeecccCCCCCccc-ccCCCCHHHHHHHHHHHHhc-CcceeccC
Q 018731 267 EAMADLRSIDVDILTLGQYLQPTPLHLT-VKEYVTPEKFDFWKAYGESI-GFRYVASG 322 (351)
Q Consensus 267 ~~l~~l~~lg~d~i~i~~~l~PTp~~~~-~~~~v~~~e~~~~~~~~~~~-G~~~~~~~ 322 (351)
+..+|+++.|+|.+.+. +=.--..+.. ..+..+.-++++++++.+.+ ++..+.+|
T Consensus 177 eA~~Fv~~TgvD~LAva-iGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHG 233 (347)
T PRK09196 177 EAADFVKKTQVDALAIA-IGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHG 233 (347)
T ss_pred HHHHHHHHhCcCeEhhh-hccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeC
Confidence 88899999999987663 2011111110 01110113566777777766 56555443
No 435
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=73.90 E-value=22 Score=36.07 Aligned_cols=134 Identities=17% Similarity=0.209 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
+..+.++++.+.|++-|.+-..+. ......+++++||+.+|+..|-+ -+ ..+.+....+.++|+|.|.+++
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~~~g------~~~~~~~~i~~ik~~~p~~~vi~--g~-v~t~e~a~~a~~aGaD~i~vg~ 318 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDSSQG------DSIYQLEMIKYIKKTYPELDVIG--GN-VVTMYQAQNLIQAGVDGLRVGM 318 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCC------CcHHHHHHHHHHHHhCCCCcEEE--ec-CCCHHHHHHHHHcCcCEEEECC
Confidence 345677888899999998854332 23567799999999988766532 11 2478899999999999996654
Q ss_pred hchHH-HHhhhcCCCC-CHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 215 ETVKR-LQRIVRDPRA-GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 215 es~~~-~~~~~r~~~~-~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
-+..- ..+...+.+. ....+...-+.+++ .++.|-++ |=-.+..++.+.+ .+|.+.+.++..+
T Consensus 319 g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~--~~vpVIad---GGI~~~~di~kAl----a~GA~~V~vGs~~ 383 (505)
T PLN02274 319 GSGSICTTQEVCAVGRGQATAVYKVASIAAQ--HGVPVIAD---GGISNSGHIVKAL----TLGASTVMMGSFL 383 (505)
T ss_pred CCCccccCccccccCCCcccHHHHHHHHHHh--cCCeEEEe---CCCCCHHHHHHHH----HcCCCEEEEchhh
Confidence 22111 0111110011 11122222222333 45553222 1124566666554 4899988887655
No 436
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=73.78 E-value=66 Score=28.68 Aligned_cols=122 Identities=17% Similarity=0.279 Sum_probs=79.9
Q ss_pred HHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC-HHHHHHHHHcCCCeeecchhch
Q 018731 139 TAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDVFAHNIETV 217 (351)
Q Consensus 139 ~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~-~e~l~~L~~aG~~~i~~~ies~ 217 (351)
+++.+.+.|.+.+.+.|..+ .+.+.+.++..++....+.++.... .+ ++..+.+.++|++.+.+.. +.
T Consensus 72 e~~ma~~aGAd~~tV~g~A~-------~~TI~~~i~~A~~~~~~v~iDl~~~---~~~~~~~~~l~~~gvd~~~~H~-g~ 140 (217)
T COG0269 72 EARMAFEAGADWVTVLGAAD-------DATIKKAIKVAKEYGKEVQIDLIGV---WDPEQRAKWLKELGVDQVILHR-GR 140 (217)
T ss_pred HHHHHHHcCCCEEEEEecCC-------HHHHHHHHHHHHHcCCeEEEEeecC---CCHHHHHHHHHHhCCCEEEEEe-cc
Confidence 45556788999999988764 2578888888888754556665432 13 4667777779999876431 11
Q ss_pred HHHHhhhcCCCCCH-HHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 218 KRLQRIVRDPRAGY-EQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 218 ~~~~~~~r~~~~~~-~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
|... . +.++ .+.++.++.+.+ .|+.+. +.| |-+.+++ ..+...+++.+-++..+
T Consensus 141 D~q~---~--G~~~~~~~l~~ik~~~~--~g~~vA---VaG-GI~~~~i----~~~~~~~~~ivIvGraI 195 (217)
T COG0269 141 DAQA---A--GKSWGEDDLEKIKKLSD--LGAKVA---VAG-GITPEDI----PLFKGIGADIVIVGRAI 195 (217)
T ss_pred cHhh---c--CCCccHHHHHHHHHhhc--cCceEE---Eec-CCCHHHH----HHHhcCCCCEEEECchh
Confidence 1111 1 4456 677888888887 777643 233 5666665 45567889888887554
No 437
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=73.72 E-value=80 Score=29.60 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=77.3
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
..+.+...++.+.+.+..-|.-.+...-.+. ++.+.+..+++.+.+.. ..+.|.+ .-|.- +.+.+....++|++.|
T Consensus 27 n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~-~~~~~~~~~~~~~a~~~~~~vPV~l-HLDH~-~~~~i~~ai~~GftSV 103 (293)
T PRK07315 27 NLEWTQAILRAAEAKKAPVLIQTSMGAAKYM-GGYKVCKNLIENLVESMGITVPVAI-HLDHG-HYEDALECIEVGYTSI 103 (293)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccHHhhc-CcHHHHHHHHHHHHHHcCCCCcEEE-ECCCC-CHHHHHHHHHcCCCEE
Confidence 3566667777777777776654433221121 12567778888777653 1334433 44544 7788999999999998
Q ss_pred ecchhchHHHHhhhcCCCCCHHH----HHHHHHHHHHhCCCCeE--EEeeeeeC-----CCCH-HHHHHHHHHHHhCCCC
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQ----SLEVLKHAKLSKKGLIT--KSSIMLGL-----GESD-DDLKEAMADLRSIDVD 278 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~----~l~~i~~~~~~~~Gi~v--~~~~IvGl-----gEt~-e~~~~~l~~l~~lg~d 278 (351)
.+.- +..++++ ..+..+.++. .|+.+ ..+-+.|- |.+. .+..+..++. +.|+|
T Consensus 104 m~d~------------S~l~~eEni~~t~~v~~~a~~--~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~-~tgvD 168 (293)
T PRK07315 104 MFDG------------SHLPVEENLKLAKEVVEKAHA--KGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV-ETGID 168 (293)
T ss_pred EEcC------------CCCCHHHHHHHHHHHHHHHHH--cCCEEEEecCcccCcCccccCccCCCCHHHHHHHH-HcCCC
Confidence 6531 1223333 3345555666 66654 33445441 2222 3455555666 78999
Q ss_pred EEeee
Q 018731 279 ILTLG 283 (351)
Q Consensus 279 ~i~i~ 283 (351)
.+.++
T Consensus 169 ~LAv~ 173 (293)
T PRK07315 169 FLAAG 173 (293)
T ss_pred EEeec
Confidence 98874
No 438
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=73.71 E-value=47 Score=32.43 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=69.5
Q ss_pred CcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC----HHHHHHHHHcCCCeeecchhchHHHH-hhhc-CCCCCHHHHHHH
Q 018731 164 GGSGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETLVHSGLDVFAHNIETVKRLQ-RIVR-DPRAGYEQSLEV 237 (351)
Q Consensus 164 ~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~----~e~l~~L~~aG~~~i~~~ies~~~~~-~~~r-~~~~~~~~~l~~ 237 (351)
.+.+.+.+.++.+++.+|++.+-+...+.. + .+.++.+.++|.|.+-+|+-..+-.. +... .-..+.+...+.
T Consensus 95 ~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~-s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i 173 (385)
T PLN02495 95 RPFETMLAEFKQLKEEYPDRILIASIMEEY-NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEV 173 (385)
T ss_pred cCHHHHHHHHHHHHhhCCCCcEEEEccCCC-CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHH
Confidence 346778877888877666655433221211 2 36777888899999988774432210 1000 002455555555
Q ss_pred HHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 238 LKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 238 i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
++.+++ . +..-+++=+.-+..++.+.++.+.+.|+|-+.+.+-+
T Consensus 174 ~~~Vk~--~---~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 174 CGWINA--K---ATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred HHHHHH--h---hcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 566655 2 1233444445556678999999999999987775543
No 439
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=73.69 E-value=84 Score=29.87 Aligned_cols=169 Identities=14% Similarity=0.100 Sum_probs=89.5
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCC---CCCCCcH-HHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcC
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRD---DIPDGGS-GHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~---~l~~~~~-~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG 206 (351)
++++..+.++.+.+.|+..|.|--+.++ ....... +.+.++++.+++.. ++.|-+- +++.....+.++.+.++|
T Consensus 112 ~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G 190 (334)
T PRK07565 112 SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAG 190 (334)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcC
Confidence 3566777777777789888766222111 1111111 35778899998753 3443332 343322357888899999
Q ss_pred CCeeecchhchHH--H-Hh--------hhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHH
Q 018731 207 LDVFAHNIETVKR--L-QR--------IVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLR 273 (351)
Q Consensus 207 ~~~i~~~ies~~~--~-~~--------~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~ 273 (351)
+|.|.+. .+... . .+ .+.+ .......++.+..+++. .++. |+|. -.|.+|+.+.+ .
T Consensus 191 ~dgI~~~-n~~~~~~~d~~~~~~~~~~glsg-~~~~~~al~~v~~~~~~-~~ip-----Iig~GGI~s~~Da~e~l---~ 259 (334)
T PRK07565 191 ADGLVLF-NRFYQPDIDLETLEVVPGLVLST-PAELRLPLRWIAILSGR-VGAD-----LAATTGVHDAEDVIKML---L 259 (334)
T ss_pred CCeEEEE-CCcCCCCcChhhcccccCCCCCC-chhhhHHHHHHHHHHhh-cCCC-----EEEECCCCCHHHHHHHH---H
Confidence 9998652 11100 0 00 0110 11233455666666541 1333 4455 26777776665 2
Q ss_pred hCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCccee
Q 018731 274 SIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (351)
Q Consensus 274 ~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~ 319 (351)
+|++.|.++.- +.. ....+-..-...+++++.+.||..+
T Consensus 260 -aGA~~V~v~t~-----~~~-~g~~~~~~i~~~L~~~l~~~g~~~i 298 (334)
T PRK07565 260 -AGADVVMIASA-----LLR-HGPDYIGTILRGLEDWMERHGYESL 298 (334)
T ss_pred -cCCCceeeehH-----Hhh-hCcHHHHHHHHHHHHHHHHcCCCCH
Confidence 89999888522 211 0011222234456777777888644
No 440
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=73.52 E-value=83 Score=29.74 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=67.9
Q ss_pred CCchhHHHHHHHHHh-C-CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIAS-W-GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~-~-G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+.+++.+..+.+.. . ....+++.|.-|+-++ .+++.++++.+++. +..+-+= .+.+.|....+++..
T Consensus 111 is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~---~d~y~~li~~~~~~--g~~vilD-----~Sg~~L~~~L~~~P~ 180 (310)
T COG1105 111 ISEAELEQFLEQLKALLESDDIVVLSGSLPPGVP---PDAYAELIRILRQQ--GAKVILD-----TSGEALLAALEAKPW 180 (310)
T ss_pred CCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCC---HHHHHHHHHHHHhc--CCeEEEE-----CChHHHHHHHccCCc
Confidence 455666666666555 2 2445777776666565 58999999999987 4554331 156788888888877
Q ss_pred eeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe
Q 018731 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI 249 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~ 249 (351)
-|--|.+-+..+. ..+-.+.++.+++.+.+.. .|+.
T Consensus 181 lIKPN~~EL~~~~---g~~~~~~~d~i~~a~~l~~--~g~~ 216 (310)
T COG1105 181 LIKPNREELEALF---GRELTTLEDVIKAARELLA--EGIE 216 (310)
T ss_pred EEecCHHHHHHHh---CCCCCChHHHHHHHHHHHH--CCCC
Confidence 7766654444433 2133466788888777777 7775
No 441
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=73.32 E-value=56 Score=30.45 Aligned_cols=168 Identities=19% Similarity=0.209 Sum_probs=90.3
Q ss_pred CchhHHHHHHHHHhCC-CcEEEEeccCC------CCCCCCcHHHHHHHHHHHHHhCCCcE--EEEeecCCCCCHHHHHHH
Q 018731 132 DPMEPENTAKAIASWG-VDYIVLTSVDR------DDIPDGGSGHFARTVKAMKKQKPDIM--VECLTSDFRGDLRAVETL 202 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G-~~~I~ltgg~~------~~l~~~~~~~~~~li~~ik~~~p~i~--i~~~~~~~~~~~e~l~~L 202 (351)
++++..+.++.+.+.| ++.|-|--+-| ..+ ....+.+.++++.+++.. ++. +.+ +++.....+.++.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~-~~~~~~~~eiv~~vr~~~-~~pv~vKl-~~~~~~~~~~a~~l 178 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAF-GTDPELAYEVVKAVKEVV-KVPVIVKL-TPNVTDIVEIAKAA 178 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCcccc-ccCHHHHHHHHHHHHHhc-CCCEEEEc-CCCchhHHHHHHHH
Confidence 3678888888888888 88886622111 111 123567889999999864 333 333 33322124678889
Q ss_pred HHcCCCeeec-c--------hhchHHH-H---hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-C-CCHHHHHH
Q 018731 203 VHSGLDVFAH-N--------IETVKRL-Q---RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G-ESDDDLKE 267 (351)
Q Consensus 203 ~~aG~~~i~~-~--------ies~~~~-~---~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-g-Et~e~~~~ 267 (351)
.++|+|.|.+ | +++.... . ..+.++ ....-.++.++.+++. .++. ++|. | .|.+++.+
T Consensus 179 ~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~-~~~p~~l~~v~~i~~~-~~ip-----vi~~GGI~~~~da~~ 251 (301)
T PRK07259 179 EEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGP-AIKPIALRMVYQVYQA-VDIP-----IIGMGGISSAEDAIE 251 (301)
T ss_pred HHcCCCEEEEEccccccccccccCceeecCCcCccCCc-CcccccHHHHHHHHHh-CCCC-----EEEECCCCCHHHHHH
Confidence 9999998753 1 1111110 0 001101 1111245555666551 2333 3444 3 57787777
Q ss_pred HHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcceec
Q 018731 268 AMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVA 320 (351)
Q Consensus 268 ~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~ 320 (351)
.+ ..|+|.|.+..-+ .. .+.+-..-...+.+.+++.||..+.
T Consensus 252 ~l----~aGAd~V~igr~l-----l~--~P~~~~~i~~~l~~~~~~~g~~~i~ 293 (301)
T PRK07259 252 FI----MAGASAVQVGTAN-----FY--DPYAFPKIIEGLEAYLDKYGIKSIE 293 (301)
T ss_pred HH----HcCCCceeEcHHH-----hc--CcHHHHHHHHHHHHHHHHcCCCCHH
Confidence 65 3689988885322 10 1122222344566777778876543
No 442
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=73.29 E-value=21 Score=34.87 Aligned_cols=103 Identities=14% Similarity=0.200 Sum_probs=61.2
Q ss_pred ccCCCCCCcCcccCCCC-CC--CCCC--c-----------hhHHHHHHHHHhCCCcEEEEec--cCCCCC-----CCCcH
Q 018731 110 GDTCTRGCRFCAVKTSR-NP--APPD--P-----------MEPENTAKAIASWGVDYIVLTS--VDRDDI-----PDGGS 166 (351)
Q Consensus 110 s~gC~~~C~FC~~~~~~-~~--~~~~--~-----------eei~~~~~~~~~~G~~~I~ltg--g~~~~l-----~~~~~ 166 (351)
-.-|.++|.||+..... .. .... . -...+.++.+.+.|+..+.++= -+| ++ .+..+
T Consensus 82 ~~~~~~~d~~c~p~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p-~lR~klm~n~~A 160 (414)
T COG1625 82 AKQCGNGDTFCYPDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNP-ELRAKLMKNPNA 160 (414)
T ss_pred eeecCCCCcccCcchhhhhhHHHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCH-HHHHHHhcCCcH
Confidence 35689999999876421 00 0000 0 0123455668899999987753 232 22 34445
Q ss_pred HHHHHHHHHHHHhCCCcEEE-EeecCCC---CCHHHHHHHHHcCCCeeecc
Q 018731 167 GHFARTVKAMKKQKPDIMVE-CLTSDFR---GDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 167 ~~~~~li~~ik~~~p~i~i~-~~~~~~~---~~~e~l~~L~~aG~~~i~~~ 213 (351)
..+.+.++...++..++... ++.|+.. .-++.++.|.+.|.+.+.+-
T Consensus 161 ~~~le~L~~f~~~~~~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~ 211 (414)
T COG1625 161 EQLLELLRRFAERCIEVHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILM 211 (414)
T ss_pred HHHHHHHHHHHHhhhheeeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeEE
Confidence 67778887777764344322 3456553 12578888999998876543
No 443
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=73.24 E-value=40 Score=29.84 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHh--hhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHH
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQR--IVRD-PRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLR 273 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~--~~r~-~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~ 273 (351)
+.++.+.++|+|.|.++.-......+ ...+ -..+.+...+.++.+++. .++.+...+=.|..+. ++..+.++.+.
T Consensus 71 ~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-~~~~v~vk~r~~~~~~-~~~~~~~~~l~ 148 (231)
T cd02801 71 EAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-VPIPVTVKIRLGWDDE-EETLELAKALE 148 (231)
T ss_pred HHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-cCCCEEEEEeeccCCc-hHHHHHHHHHH
Confidence 57788888999999876544222111 0000 012556666777777653 2344444443443222 57888889999
Q ss_pred hCCCCEEeee
Q 018731 274 SIDVDILTLG 283 (351)
Q Consensus 274 ~lg~d~i~i~ 283 (351)
+.|++.+.+.
T Consensus 149 ~~Gvd~i~v~ 158 (231)
T cd02801 149 DAGASALTVH 158 (231)
T ss_pred HhCCCEEEEC
Confidence 9999999884
No 444
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=73.23 E-value=58 Score=27.82 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC--CCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~--p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.++..+.++.+.+.|+..|.+---+ +. .+.+.++++.+.+.. .+..+-+ ++ ..+...+.|++.+
T Consensus 11 ~~~~~~~l~~~~~~gv~~v~lR~k~---~~---~~~~~~~a~~l~~~~~~~~~~lii--n~------~~~la~~~~~dGv 76 (180)
T PF02581_consen 11 GDDFLEQLEAALAAGVDLVQLREKD---LS---DEELLELARRLAELCQKYGVPLII--ND------RVDLALELGADGV 76 (180)
T ss_dssp TCHHHHHHHHHHHTT-SEEEEE-SS---S----HHHHHHHHHHHHHHHHHTTGCEEE--ES-------HHHHHHCT-SEE
T ss_pred cchHHHHHHHHHHCCCcEEEEcCCC---CC---ccHHHHHHHHHHHHhhcceEEEEe--cC------CHHHHHhcCCCEE
Confidence 3456677778888899999884322 23 355555555555431 1334322 22 4456677999999
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeecccCCC
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPT 289 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l~PT 289 (351)
.++.+.. ...+. +.... ++. ++|. -.+.+++ ..+.+.++|++.+++++ ||
T Consensus 77 Hl~~~~~------------~~~~~----r~~~~--~~~------~ig~S~h~~~e~----~~a~~~g~dYv~~gpvf-~T 127 (180)
T PF02581_consen 77 HLGQSDL------------PPAEA----RKLLG--PDK------IIGASCHSLEEA----REAEELGADYVFLGPVF-PT 127 (180)
T ss_dssp EEBTTSS------------SHHHH----HHHHT--TTS------EEEEEESSHHHH----HHHHHCTTSEEEEETSS---
T ss_pred Eeccccc------------chHHh----hhhcc--cce------EEEeecCcHHHH----HHhhhcCCCEEEECCcc-CC
Confidence 8864221 11111 12122 343 4666 6777773 44558999999998654 65
Q ss_pred CCc
Q 018731 290 PLH 292 (351)
Q Consensus 290 p~~ 292 (351)
.-.
T Consensus 128 ~sk 130 (180)
T PF02581_consen 128 SSK 130 (180)
T ss_dssp SSS
T ss_pred CCC
Confidence 443
No 445
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=73.22 E-value=82 Score=29.53 Aligned_cols=148 Identities=14% Similarity=0.083 Sum_probs=82.5
Q ss_pred CchhHHHHHHHHHhCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCH---HHHHHHHHcCC
Q 018731 132 DPMEPENTAKAIASWGVDYIVLT-SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL---RAVETLVHSGL 207 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~lt-gg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~---e~l~~L~~aG~ 207 (351)
++++..+.++.+.+.|++.|-+- |+++ +.-.+.++.+++..+++.+.+=.+.....+ +.++.|.+.|+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~--------~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l 205 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDL--------EDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGV 205 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCCh--------hhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCC
Confidence 46777788888888999988763 3321 345678888888654443332122222112 34455566666
Q ss_pred CeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccC
Q 018731 208 DVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQ 287 (351)
Q Consensus 208 ~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~ 287 (351)
..+ ++- + +..+++ .++.+++. .++. +..||+.-+..+...++..-++|.+.+-
T Consensus 206 ~~i-------EeP---~--~~~d~~----~~~~L~~~-~~ip------Ia~~E~~~~~~~~~~~~~~~~~d~v~~~---- 258 (316)
T cd03319 206 ELI-------EQP---V--PAGDDD----GLAYLRDK-SPLP------IMADESCFSAADAARLAGGGAYDGINIK---- 258 (316)
T ss_pred CEE-------ECC---C--CCCCHH----HHHHHHhc-CCCC------EEEeCCCCCHHHHHHHHhcCCCCEEEEe----
Confidence 665 111 1 122332 23334431 3343 2225665555555566677788887772
Q ss_pred CCCCcccccCCCCHHHHHHHHHHHHhcCcceecc
Q 018731 288 PTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (351)
Q Consensus 288 PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~ 321 (351)
|+... ...+..++.++++..|...+.+
T Consensus 259 ~~~~G-------Gi~~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 259 LMKTG-------GLTEALRIADLARAAGLKVMVG 285 (316)
T ss_pred ccccC-------CHHHHHHHHHHHHHcCCCEEEE
Confidence 32221 2345777888888899876654
No 446
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=73.17 E-value=21 Score=32.96 Aligned_cols=80 Identities=11% Similarity=0.048 Sum_probs=51.9
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEec--cCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEeecCCC--CCHHHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFR--GDLRAVETLVH 204 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltg--g~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~~~~~--~~~e~l~~L~~ 204 (351)
..+.+...+.++.+.+.|++.|++.| |+...|. .+.-.++++.+.+... .+.+-+.+.... ...+.++...+
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls---~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLT---DEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCC---HHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHH
Confidence 46778888999999999999998865 4444444 4666777777766533 344433222111 12356667788
Q ss_pred cCCCeeec
Q 018731 205 SGLDVFAH 212 (351)
Q Consensus 205 aG~~~i~~ 212 (351)
+|+|.+.+
T Consensus 91 ~Gad~v~v 98 (281)
T cd00408 91 AGADGVLV 98 (281)
T ss_pred cCCCEEEE
Confidence 89999865
No 447
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=73.00 E-value=7.9 Score=37.72 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCeeecchhc------------hHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe--EEEeeeeeC----
Q 018731 197 RAVETLVHSGLDVFAHNIET------------VKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI--TKSSIMLGL---- 258 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies------------~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~--v~~~~IvGl---- 258 (351)
+.+++.++||+|.|-++.-. .+...+.+ +.+++.+.+.+..+.+ .++ +..++++|+
T Consensus 154 ~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDey---GGslenR~rf~~eii~---~vr~~~g~~f~v~vri~~ 227 (382)
T cd02931 154 ESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKY---GGSLENRLRFAIEIVE---EIKARCGEDFPVSLRYSV 227 (382)
T ss_pred HHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcC---CCCHHHHhHHHHHHHH---HHHHhcCCCceEEEEEec
Q ss_pred --------------------CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 259 --------------------GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 259 --------------------gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|-|.++..+.++.+.+.|+|.+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~v 271 (382)
T cd02931 228 KSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDV 271 (382)
T ss_pred hhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEe
No 448
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=72.95 E-value=17 Score=34.56 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHH-cCCCeeecc
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH-SGLDVFAHN 213 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~-aG~~~i~~~ 213 (351)
+..+.++.+.+.|+..|.+.|.+......+.. . .+.++.+++.. ++.|- .+++..+.+.++.+.+ .|+|.|.++
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a-~-~~~i~~ik~~~-~iPVI--~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTRACLFNGEA-E-YDSIRAVKQKV-SIPVI--ANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCccccccCCCc-C-hHHHHHHHHhc-CCcEE--EeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 45677777788899999988766432222211 1 36777777753 44443 3555567777766665 799999876
No 449
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=72.86 E-value=92 Score=29.96 Aligned_cols=133 Identities=15% Similarity=0.151 Sum_probs=73.5
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe----ecCCCCC-HHHHHHHHHcCCCeee
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL----TSDFRGD-LRAVETLVHSGLDVFA 211 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~----~~~~~~~-~e~l~~L~~aG~~~i~ 211 (351)
.+.+....+.|+-- .++++.. .+.+ +.+.+.++.+++..|+..+-++ .... .+ ++..+.....+.|.+.
T Consensus 80 ~~La~~a~~~G~~~-~~Gs~~~-~~~~---~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~-~~~~~~~~~~~~~~adal~ 153 (352)
T PRK05437 80 RKLAEAAEELGIAM-GVGSQRA-ALKD---PELADSFSVVRKVAPDGLLFANLGAVQLYG-YGVEEAQRAVEMIEADALQ 153 (352)
T ss_pred HHHHHHHHHcCCCe-EecccHh-hccC---hhhHHHHHHHHHHCCCceEEeecCccccCC-CCHHHHHHHHHhcCCCcEE
Confidence 44555555666542 2322211 1221 3377888888887776543321 1112 23 3455555666788887
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+++....+... .....+++.+++.++.+++. .++.|..-. +|.|-+ .+.++.+.+.|+|.+.++
T Consensus 154 l~l~~~qe~~~--p~g~~~f~~~le~i~~i~~~-~~vPVivK~-~g~g~s----~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 154 IHLNPLQELVQ--PEGDRDFRGWLDNIAEIVSA-LPVPVIVKE-VGFGIS----KETAKRLADAGVKAIDVA 217 (352)
T ss_pred EeCccchhhcC--CCCcccHHHHHHHHHHHHHh-hCCCEEEEe-CCCCCc----HHHHHHHHHcCCCEEEEC
Confidence 77644333211 00123678788888888872 155544332 355655 355677778999999884
No 450
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=72.80 E-value=69 Score=28.47 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=96.7
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEee--cCCCCC----HHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT--SDFRGD----LRAVETLV 203 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~--~~~~~~----~e~l~~L~ 203 (351)
..+.+++.+.+++..+.|+..+++ + ..+..+.+..-+. .++.+.+.. |.+..+ -..++...
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv----~--------p~~v~~a~~~l~~-~~v~v~tVigFP~G~~~~~~K~~E~~~Av 80 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCV----N--------PSYVPLAKELLKG-TEVRICTVVGFPLGASTTDVKLYETKEAI 80 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEe----C--------HHHHHHHHHHcCC-CCCeEEEEeCCCCCCCcHHHHHHHHHHHH
Confidence 356688999999999999999887 1 2344444433221 245655432 222222 23456677
Q ss_pred HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+.|.|.|-+-+. ...++ ...++...+-++.+++...|+.++.-+=.|+ -+.+++....+...+.|+|++-.+
T Consensus 81 ~~GAdEiDvv~n-----~g~l~--~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~-L~~~ei~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 81 KYGADEVDMVIN-----IGALK--DGNEEVVYDDIRAVVEACAGVLLKVIIETGL-LTDEEIRKACEICIDAGADFVKTS 152 (211)
T ss_pred HcCCCEEEeecc-----hHhhh--CCcHHHHHHHHHHHHHHcCCCeEEEEEecCC-CCHHHHHHHHHHHHHhCCCEEEeC
Confidence 789998754322 12232 5688888888888887555777766333444 566888899999999999988763
Q ss_pred cccCCCCCcccccCCCCHHHHHHHHHHHH
Q 018731 284 QYLQPTPLHLTVKEYVTPEKFDFWKAYGE 312 (351)
Q Consensus 284 ~~l~PTp~~~~~~~~v~~~e~~~~~~~~~ 312 (351)
|.+. ....++++...+++...
T Consensus 153 -----TGf~---~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 153 -----TGFG---AGGATVEDVRLMRNTVG 173 (211)
T ss_pred -----CCCC---CCCCCHHHHHHHHHHhc
Confidence 3332 13356666666666544
No 451
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=72.63 E-value=33 Score=32.94 Aligned_cols=86 Identities=17% Similarity=0.263 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCCeeecch-hc--hHHH----HhhhcC-CCCCHH----HHHHHHHHHHHhC-CCCeEEE-----eeeeeC
Q 018731 197 RAVETLVHSGLDVFAHNI-ET--VKRL----QRIVRD-PRAGYE----QSLEVLKHAKLSK-KGLITKS-----SIMLGL 258 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~i-es--~~~~----~~~~r~-~~~~~~----~~l~~i~~~~~~~-~Gi~v~~-----~~IvGl 258 (351)
+.++..+++|+|.|-+.. .. +.++ ....+| -+.+.+ -.++.++.+++.. .++.+.. +..-|
T Consensus 141 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~- 219 (353)
T cd02930 141 RCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEG- 219 (353)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCC-
Confidence 456677889999997532 11 1111 100000 122333 3445555555532 3333321 11111
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 259 GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 259 gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|.+.++..+.++.|.+.|+|.++++
T Consensus 220 g~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 220 GSTWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 4688889999999999999999884
No 452
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=72.52 E-value=37 Score=30.51 Aligned_cols=75 Identities=24% Similarity=0.255 Sum_probs=48.6
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc-CCCeee
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS-GLDVFA 211 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a-G~~~i~ 211 (351)
..+..+.++.+.+.|+..+.+++.+... ... ....++++.+++.. ++.+- ..++..+.+.++.+.+. |++.+.
T Consensus 148 ~~~~~~~~~~l~~~G~d~i~v~~i~~~g-~~~--g~~~~~i~~i~~~~-~~pvi--a~GGi~~~~di~~~l~~~g~dgv~ 221 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTSMDRDG-TKK--GYDLELIRAVSSAV-NIPVI--ASGGAGKPEHFVEAFEEGGADAAL 221 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeccCCCC-CCC--CCCHHHHHHHHhhC-CCCEE--EeCCCCCHHHHHHHHHhCCCCEEE
Confidence 4456677788888999999998765321 111 12356677777653 44443 35555677777777776 999887
Q ss_pred cc
Q 018731 212 HN 213 (351)
Q Consensus 212 ~~ 213 (351)
++
T Consensus 222 vg 223 (243)
T cd04731 222 AA 223 (243)
T ss_pred Ee
Confidence 64
No 453
>PLN02334 ribulose-phosphate 3-epimerase
Probab=72.52 E-value=71 Score=28.50 Aligned_cols=127 Identities=17% Similarity=0.248 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHH--HHHHHHHHhCCCc--EEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFA--RTVKAMKKQKPDI--MVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~--~li~~ik~~~p~i--~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
..+.+.++.+.+.|++.+.+---+....++ ... ++++.+++. ++. .+...+.+ ..+.++.+.++|.+.
T Consensus 20 ~~l~~~l~~~~~~g~~~ihld~~d~~f~~~----~~~g~~~~~~l~~~-~~~~~~vhlmv~~---p~d~~~~~~~~gad~ 91 (229)
T PLN02334 20 ANLAEEAKRVLDAGADWLHVDVMDGHFVPN----LTIGPPVVKALRKH-TDAPLDCHLMVTN---PEDYVPDFAKAGASI 91 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCCcCCc----cccCHHHHHHHHhc-CCCcEEEEeccCC---HHHHHHHHHHcCCCE
Confidence 466778888888999998883222110111 111 677778775 332 34333321 257889999999999
Q ss_pred eecchhc-hHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC-CCEEeeecccC
Q 018731 210 FAHNIET-VKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID-VDILTLGQYLQ 287 (351)
Q Consensus 210 i~~~ies-~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg-~d~i~i~~~l~ 287 (351)
|.+.++- .+ +...+.++.+++ .|+.+...+ . ..|..+.. +.+.+.+ +|.+.++.. .
T Consensus 92 v~vH~~q~~~-------------d~~~~~~~~i~~--~g~~iGls~--~-~~t~~~~~---~~~~~~~~~Dyi~~~~v-~ 149 (229)
T PLN02334 92 FTFHIEQAST-------------IHLHRLIQQIKS--AGMKAGVVL--N-PGTPVEAV---EPVVEKGLVDMVLVMSV-E 149 (229)
T ss_pred EEEeeccccc-------------hhHHHHHHHHHH--CCCeEEEEE--C-CCCCHHHH---HHHHhccCCCEEEEEEE-e
Confidence 9665541 11 122456667777 776432222 1 23444332 3333453 898887633 4
Q ss_pred CCC
Q 018731 288 PTP 290 (351)
Q Consensus 288 PTp 290 (351)
||.
T Consensus 150 pg~ 152 (229)
T PLN02334 150 PGF 152 (229)
T ss_pred cCC
Confidence 643
No 454
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=72.43 E-value=59 Score=31.47 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHHHHHH
Q 018731 227 PRAGYEQSLEVLKHAKL 243 (351)
Q Consensus 227 ~~~~~~~~l~~i~~~~~ 243 (351)
|+.+.+++.+.++.+.+
T Consensus 165 Pgqt~~~~~~~l~~~~~ 181 (370)
T PRK06294 165 PTQSLSDFIVDLHQAIT 181 (370)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 45566666666666665
No 455
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=72.41 E-value=27 Score=32.29 Aligned_cols=79 Identities=16% Similarity=0.075 Sum_probs=50.3
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCC------------CCc---H---HHHHHHHHHHHHhCC-CcEEEEeecCCC
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIP------------DGG---S---GHFARTVKAMKKQKP-DIMVECLTSDFR 193 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~------------~~~---~---~~~~~li~~ik~~~p-~i~i~~~~~~~~ 193 (351)
.+++.+.++.+.+.|++.|.+++....... ..+ . ..-.+.++.+++..+ ++.|- ..++.
T Consensus 175 ~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipii--a~GGI 252 (289)
T cd02810 175 LEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPII--GVGGI 252 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEE--EECCC
Confidence 457788888888899999988754321000 000 0 123566777777654 45543 34565
Q ss_pred CCHHHHHHHHHcCCCeeecc
Q 018731 194 GDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~ 213 (351)
.+.+.+..+.++|.+.|.++
T Consensus 253 ~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 253 DSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred CCHHHHHHHHHcCccHheEc
Confidence 67777788778999988765
No 456
>PRK01254 hypothetical protein; Provisional
Probab=72.41 E-value=74 Score=33.39 Aligned_cols=106 Identities=13% Similarity=0.182 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHh-CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC--CCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 134 MEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 134 eei~~~~~~~~~-~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~--p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
....++++.+.+ .|++.|.+.+|.+.++.... .++++.+.+.. +.+.|- +.. .+++.|+.|.+-|...+
T Consensus 468 ~~l~eLLrkLr~IpGVKkVrI~SgiR~Dl~l~d----~elIeel~~~hV~g~LkVp---pEH-~Sd~VLk~M~Kp~~~~~ 539 (707)
T PRK01254 468 EPTINLYRRARDLKGIKKILIASGVRYDLAVED----PRYVKELVTHHVGGYLKIA---PEH-TEEGPLSKMMKPGMGSY 539 (707)
T ss_pred HHHHHHHHHHHhCCCceEEEEEcCCCccccccC----HHHHHHHHHhCCccccccc---ccc-CCHHHHHHhCCCCcccH
Confidence 456667777765 49999999999876554211 33555554431 123332 222 37788888877654432
Q ss_pred ecchhchHHHHhh-----------h-cCCCCCHHHHHHHHHHHHHhCCCCe
Q 018731 211 AHNIETVKRLQRI-----------V-RDPRAGYEQSLEVLKHAKLSKKGLI 249 (351)
Q Consensus 211 ~~~ies~~~~~~~-----------~-r~~~~~~~~~l~~i~~~~~~~~Gi~ 249 (351)
.--.+-++++.+. + .-|+.+.++..+.++.+++ .|+.
T Consensus 540 e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLke--l~f~ 588 (707)
T PRK01254 540 DRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKK--NRFR 588 (707)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHH--hCCC
Confidence 1111222222211 1 1266788999999999999 7775
No 457
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=72.21 E-value=33 Score=31.56 Aligned_cols=76 Identities=9% Similarity=0.089 Sum_probs=45.0
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCeee
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
++.+.+.++.+.+.|+..|.|..-..-.. .+.+.++++.+++..+ +.+.+- +++.-+.-.-.-.-.++|++++.
T Consensus 140 ~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~----P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd 214 (262)
T cd07948 140 LVDLLRVYRAVDKLGVNRVGIADTVGIAT----PRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHID 214 (262)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCCCC----HHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 56677788888888888888833222112 3678888888888754 444331 23322222223333478888875
Q ss_pred cc
Q 018731 212 HN 213 (351)
Q Consensus 212 ~~ 213 (351)
.+
T Consensus 215 ~s 216 (262)
T cd07948 215 TT 216 (262)
T ss_pred Ee
Confidence 43
No 458
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=72.20 E-value=39 Score=30.94 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCCeeecch
Q 018731 196 LRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~i 214 (351)
++.++.++++|++.|-+.+
T Consensus 24 ~e~~~~~~~~G~~~iEl~~ 42 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSV 42 (283)
T ss_pred HHHHHHHHHcCCCeEEEec
Confidence 4666666666666665543
No 459
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=71.95 E-value=92 Score=29.55 Aligned_cols=167 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccC---CCCCCCCcH-HHHHHHHHHHHHhCCCcEEEE-eecCCCCCHHHHHHHHHcC
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVD---RDDIPDGGS-GHFARTVKAMKKQKPDIMVEC-LTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~---~~~l~~~~~-~~~~~li~~ik~~~p~i~i~~-~~~~~~~~~e~l~~L~~aG 206 (351)
++++..+.++.+.+.|++.|-|--.. .+.+..... +.+.++++.+++.. ++.|-+ ++++.....+.++.+.++|
T Consensus 110 ~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~~~~~~a~~l~~~G 188 (325)
T cd04739 110 SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFSALAHMAKQLDAAG 188 (325)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCccCHHHHHHHHHHcC
Q ss_pred CCeee---------cchhchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee-eeeC--CCCHHHHHHHHHHHH
Q 018731 207 LDVFA---------HNIETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI-MLGL--GESDDDLKEAMADLR 273 (351)
Q Consensus 207 ~~~i~---------~~ies~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-IvGl--gEt~e~~~~~l~~l~ 273 (351)
++.|. +.+++..... ..+. ...-....++.+..+++ ..++ |+|. -.|.+|..+.+.
T Consensus 189 adgi~~~nt~~~~~id~~~~~~~~~~glS-G~~~~~~al~~v~~v~~-------~~~ipIig~GGI~s~~Da~e~l~--- 257 (325)
T cd04739 189 ADGLVLFNRFYQPDIDLETLEVVPNLLLS-SPAEIRLPLRWIAILSG-------RVKASLAASGGVHDAEDVVKYLL--- 257 (325)
T ss_pred CCeEEEEcCcCCCCccccccceecCCCcC-CccchhHHHHHHHHHHc-------ccCCCEEEECCCCCHHHHHHHHH---
Q ss_pred hCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcc
Q 018731 274 SIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (351)
Q Consensus 274 ~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~ 317 (351)
.|++.|.++.-+ ......+-..-...+.+++++.||.
T Consensus 258 -aGA~~Vqv~ta~------~~~gp~~~~~i~~~L~~~l~~~g~~ 294 (325)
T cd04739 258 -AGADVVMTTSAL------LRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred -cCCCeeEEehhh------hhcCchHHHHHHHHHHHHHHHcCCC
No 460
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=71.75 E-value=91 Score=33.38 Aligned_cols=140 Identities=16% Similarity=0.146 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
...+.++.+.+.|+.-|.+- + ..++ .+.+.++++.+++......+.++.++ ..+...++|.+ |.++.
T Consensus 20 ~~~~~l~~~l~~g~~~iqlR--~-K~~~---~~~~~~~a~~l~~l~~~~~~~liind------~~~la~~~~~d-VHlg~ 86 (755)
T PRK09517 20 KVAGIVDSAISGGVSVVQLR--D-KNAG---VEDVRAAAKELKELCDARGVALVVND------RLDVAVELGLH-VHIGQ 86 (755)
T ss_pred cHHHHHHHHHhcCCCEEEEe--C-CCCC---HHHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCC-eecCC
Confidence 34556667777899888873 2 1233 35566666666543211122333332 35667788999 87764
Q ss_pred hchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC---CCCEEeeecccCCCC
Q 018731 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI---DVDILTLGQYLQPTP 290 (351)
Q Consensus 215 es~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l---g~d~i~i~~~l~PTp 290 (351)
+.++. +..+... | -+.++|. ..|.+++.........+ |+|.+.+++++ ||.
T Consensus 87 ~dl~~----------------~~~r~~~----~----~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf-~T~ 141 (755)
T PRK09517 87 GDTPY----------------TQARRLL----P----AHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVA-STA 141 (755)
T ss_pred CcCCH----------------HHHHHhc----C----CCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCcc-ccC
Confidence 33211 1111111 1 2346788 88988875543333334 59999998664 654
Q ss_pred CcccccCCCCHHHHHHHHHHHH
Q 018731 291 LHLTVKEYVTPEKFDFWKAYGE 312 (351)
Q Consensus 291 ~~~~~~~~v~~~e~~~~~~~~~ 312 (351)
-.......+..+.+..+.+...
T Consensus 142 tK~~~~~~lG~~~l~~~~~~~~ 163 (755)
T PRK09517 142 TKPDAPPALGVDGIAEIAAVAQ 163 (755)
T ss_pred CCCCCCCCCCHHHHHHHHHhcC
Confidence 4321123345566666665554
No 461
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=71.74 E-value=90 Score=32.40 Aligned_cols=81 Identities=12% Similarity=0.043 Sum_probs=53.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecC-CCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD-FRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~-~~~~~e~l~~L~~aG~~~ 209 (351)
.+++...+.++++.+.|++.|.|-.-..- +. ...+.++++++++.. ++.|..-+.+ .-+.....-.-.++|++.
T Consensus 151 ~t~e~~~~~ak~l~~~Gad~I~IkDtaG~-l~---P~~v~~lv~alk~~~-~ipi~~H~Hnt~Gla~an~laAieaGad~ 225 (596)
T PRK14042 151 HTLDNFLELGKKLAEMGCDSIAIKDMAGL-LT---PTVTVELYAGLKQAT-GLPVHLHSHSTSGLASICHYEAVLAGCNH 225 (596)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCcccC-CC---HHHHHHHHHHHHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCCCE
Confidence 45678889999999999999999432221 22 378999999999875 4555432222 112333444457899999
Q ss_pred eecchhc
Q 018731 210 FAHNIET 216 (351)
Q Consensus 210 i~~~ies 216 (351)
|-.++.+
T Consensus 226 iD~ai~g 232 (596)
T PRK14042 226 IDTAISS 232 (596)
T ss_pred EEecccc
Confidence 8655433
No 462
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=71.64 E-value=21 Score=33.59 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=51.0
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEec--cCCCCCCCCcHHHHHHHHHHHHHhCCC-cEEEEee--cCCCCCHHHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLT--SDFRGDLRAVETLVH 204 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltg--g~~~~l~~~~~~~~~~li~~ik~~~p~-i~i~~~~--~~~~~~~e~l~~L~~ 204 (351)
..+.+.+.+.++.+.+.|++.|++.| |+...|. .+.-.++++...+...+ +.|-+-+ .+....-+.++...+
T Consensus 25 ~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt---~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~ 101 (309)
T cd00952 25 TVDLDETARLVERLIAAGVDGILTMGTFGECATLT---WEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLD 101 (309)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcccccchhCC---HHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHH
Confidence 46677888999999999999999865 4444455 46666777766654333 3332222 111112356677778
Q ss_pred cCCCeeec
Q 018731 205 SGLDVFAH 212 (351)
Q Consensus 205 aG~~~i~~ 212 (351)
+|.|.+.+
T Consensus 102 ~Gad~vlv 109 (309)
T cd00952 102 LGADGTML 109 (309)
T ss_pred hCCCEEEE
Confidence 89998864
No 463
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=71.56 E-value=57 Score=27.87 Aligned_cols=89 Identities=19% Similarity=0.338 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCc-EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCC
Q 018731 169 FARTVKAMKKQKPDI-MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKG 247 (351)
Q Consensus 169 ~~~li~~ik~~~p~i-~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~G 247 (351)
+.+.++.+++..|.. .|++-.. +.+.++...++|+|.|.+. ..+.++..++++.+++..+.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~----~~ee~~ea~~~g~d~I~lD--------------~~~~~~~~~~v~~l~~~~~~ 127 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVE----NLEEAEEALEAGADIIMLD--------------NMSPEDLKEAVEELRELNPR 127 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEES----SHHHHHHHHHTT-SEEEEE--------------S-CHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCceEEEEcC----CHHHHHHHHHhCCCEEEec--------------CcCHHHHHHHHHHHhhcCCc
Confidence 566777778776654 3554332 5678888999999998542 23667777777776663344
Q ss_pred CeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 248 LITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 248 i~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+.+.+ -| |=|.+.+.+. .+.|+|.+.++
T Consensus 128 v~ie~---SG-GI~~~ni~~y----a~~gvD~isvg 155 (169)
T PF01729_consen 128 VKIEA---SG-GITLENIAEY----AKTGVDVISVG 155 (169)
T ss_dssp SEEEE---ES-SSSTTTHHHH----HHTT-SEEEEC
T ss_pred EEEEE---EC-CCCHHHHHHH----HhcCCCEEEcC
Confidence 43211 12 4444444333 46899999885
No 464
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.40 E-value=10 Score=36.55 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 259 GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 259 gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|-+.+|..+.++.+.+.|+|.++++
T Consensus 231 g~~~ee~~~i~~~L~~~GvD~I~Vs 255 (353)
T cd04735 231 GIRMEDTLALVDKLADKGLDYLHIS 255 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEec
Confidence 5578899999999999999999985
No 465
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=71.27 E-value=22 Score=33.58 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=45.4
Q ss_pred HHHHHHHHh------CCCcEEEEecc--CCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 137 ENTAKAIAS------WGVDYIVLTSV--DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 137 ~~~~~~~~~------~G~~~I~ltgg--~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++.++.+ .|++.|.|--. .|..+ ....+.+.+.++.++.. ..+++ .++ .+.+.+..+++.|+|
T Consensus 213 leea~ea~~~~~~~~agaDiImLDnm~~~~~~~-~~~~e~l~~av~~~~~~---~~lEa--SGG-It~~ni~~yA~tGVD 285 (308)
T PLN02716 213 LEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENG-DVDVSMLKEAVELINGR---FETEA--SGN-VTLDTVHKIGQTGVT 285 (308)
T ss_pred HHHHHHHHHhcccccCCCCEEEeCCCccccccc-CCCHHHHHHHHHhhCCC---ceEEE--ECC-CCHHHHHHHHHcCCC
Confidence 455555667 88988887322 11111 11246777777766543 34555 344 489999999999999
Q ss_pred eeecch
Q 018731 209 VFAHNI 214 (351)
Q Consensus 209 ~i~~~i 214 (351)
.|+.|.
T Consensus 286 ~Is~Ga 291 (308)
T PLN02716 286 YISSGA 291 (308)
T ss_pred EEEeCc
Confidence 998764
No 466
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=71.24 E-value=75 Score=28.25 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCCCcCcccCCCCCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCC
Q 018731 114 TRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR 193 (351)
Q Consensus 114 ~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~ 193 (351)
...+..|++-+.........+. .+.++.+.+.|++-+.| + -.+.....+.++.+.++...-...+.++.++
T Consensus 2 ~~~~~~lylvt~~~~~~~~~~~-~~~ve~al~~Gv~~vQl----R--~K~~~~~~~~~~a~~~~~lc~~~~v~liINd-- 72 (211)
T COG0352 2 SMELLRLYLVTDRPLIYDGVDL-LEWVEAALKGGVTAVQL----R--EKDLSDEEYLALAEKLRALCQKYGVPLIIND-- 72 (211)
T ss_pred CCcccceEEEcCCccccccchh-HHHHHHHHhCCCeEEEE----e--cCCCChHHHHHHHHHHHHHHHHhCCeEEecC--
Q ss_pred CCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHH
Q 018731 194 GDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADL 272 (351)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l 272 (351)
.++...+.|.|.|.++.+...- ...+++.. +++ ++|+ ..+.|+..+.
T Consensus 73 ----~~dlA~~~~AdGVHlGq~D~~~----------------~~ar~~~~--~~~------iIG~S~h~~eea~~A---- 120 (211)
T COG0352 73 ----RVDLALAVGADGVHLGQDDMPL----------------AEARELLG--PGL------IIGLSTHDLEEALEA---- 120 (211)
T ss_pred ----cHHHHHhCCCCEEEcCCcccch----------------HHHHHhcC--CCC------EEEeecCCHHHHHHH----
Q ss_pred HhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHH
Q 018731 273 RSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAY 310 (351)
Q Consensus 273 ~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~ 310 (351)
.+.|+|++.+++++ ||+-.... .....+-+..+++.
T Consensus 121 ~~~g~DYv~~Gpif-pT~tK~~~-~~~G~~~l~~~~~~ 156 (211)
T COG0352 121 EELGADYVGLGPIF-PTSTKPDA-PPLGLEGLREIREL 156 (211)
T ss_pred HhcCCCEEEECCcC-CCCCCCCC-CccCHHHHHHHHHh
No 467
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=71.21 E-value=22 Score=31.98 Aligned_cols=73 Identities=25% Similarity=0.285 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.+.+.++.+.+.|+..+++++.+.+.... + .-.++++.+.+.. ++.+. ..++..+.+.+..+.++|++.+.++
T Consensus 150 ~~~~~~~~~~~~G~~~i~~~~~~~~g~~~-g--~~~~~i~~i~~~~-~iPvi--a~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 150 TPVEAAKRFEELGAGSILFTNVDVEGLLE-G--VNTEPVKELVDSV-DIPVI--ASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEeecCCCCcC-C--CCHHHHHHHHHhC-CCCEE--EeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 45667777788999999998764321111 1 1134556666543 34443 3556667888888999999998775
No 468
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.13 E-value=17 Score=34.99 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=48.8
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+.++..+.++.+.+.|+..|.++++..............+.++.+++.. .++.|- ..+...+++.++.+.+.|+|.
T Consensus 232 ~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi--~~Ggi~t~e~ae~~l~~gaD~ 309 (353)
T cd04735 232 IRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLI--AVGSINTPDDALEALETGADL 309 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEE--EECCCCCHHHHHHHHHcCCCh
Confidence 34567778888888899999999876532111000011234445555543 234443 244445788888887779998
Q ss_pred eecc
Q 018731 210 FAHN 213 (351)
Q Consensus 210 i~~~ 213 (351)
|.++
T Consensus 310 V~~g 313 (353)
T cd04735 310 VAIG 313 (353)
T ss_pred HHHh
Confidence 8765
No 469
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.08 E-value=22 Score=33.58 Aligned_cols=79 Identities=23% Similarity=0.199 Sum_probs=51.8
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCC------CcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPD------GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~------~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
+.++..+.++.+.+.|+..|.++++....... .......+.++.+++.. ++.|- ..+...+.+.++.+.+.
T Consensus 226 ~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi--~~Ggi~t~~~a~~~l~~ 302 (327)
T cd02803 226 TLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVI--AVGGIRDPEVAEEILAE 302 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEE--EeCCCCCHHHHHHHHHC
Confidence 45677888888889999999988765321110 01134557777888764 44443 34455567777777777
Q ss_pred -CCCeeecc
Q 018731 206 -GLDVFAHN 213 (351)
Q Consensus 206 -G~~~i~~~ 213 (351)
|+|.|.++
T Consensus 303 g~aD~V~ig 311 (327)
T cd02803 303 GKADLVALG 311 (327)
T ss_pred CCCCeeeec
Confidence 79988775
No 470
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=70.98 E-value=56 Score=30.52 Aligned_cols=79 Identities=10% Similarity=-0.039 Sum_probs=49.8
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEec--cCCCCCCCCcHHHHHHHHHHHHHhCCC-cEEEEeecCCCCCH---HHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLTSDFRGDL---RAVETLV 203 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltg--g~~~~l~~~~~~~~~~li~~ik~~~p~-i~i~~~~~~~~~~~---e~l~~L~ 203 (351)
..+.+.+.+.++.+.+.|++.+++.| |+...|+ .+.-.++++.+.+...+ +.|-+-+.. ..++ +..+...
T Consensus 17 ~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls---~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ai~~a~~A~ 92 (294)
T TIGR02313 17 DIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLT---LEERKQAIENAIDQIAGRIPFAPGTGA-LNHDETLELTKFAE 92 (294)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccCcccccCC---HHHHHHHHHHHHHHhCCCCcEEEECCc-chHHHHHHHHHHHH
Confidence 46778889999999999999998866 4444455 35566666665554333 433221211 1123 4556667
Q ss_pred HcCCCeeec
Q 018731 204 HSGLDVFAH 212 (351)
Q Consensus 204 ~aG~~~i~~ 212 (351)
++|+|.+.+
T Consensus 93 ~~Gad~v~v 101 (294)
T TIGR02313 93 EAGADAAMV 101 (294)
T ss_pred HcCCCEEEE
Confidence 789999864
No 471
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=70.93 E-value=56 Score=26.63 Aligned_cols=83 Identities=16% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEeecCCCCC------HHHHHHHHHcCCC
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGD------LRAVETLVHSGLD 208 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~~~~~~~------~e~l~~L~~aG~~ 208 (351)
+++.++.+.+.+++-|.+++-....+ ..+.++++.+++... ++.+-+ ++... ++..++|+++|++
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t~~~-----~~~~~~~~~l~~~gl~~v~viv---GG~~~i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYGHGE-----IDCKGLREKCDEAGLKDILLYV---GGNLVVGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred HHHHHHHHHHcCCCEEEEeccccCCH-----HHHHHHHHHHHHCCCCCCeEEE---ECCCCCChhhhHHHHHHHHHcCCC
Q ss_pred eeecchhchHHHHhhhcCCCCCHHHHHHHHHH
Q 018731 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKH 240 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~ 240 (351)
.+. +|+.+.++.+..|++
T Consensus 111 ~vf--------------~pgt~~~~i~~~l~~ 128 (128)
T cd02072 111 RVF--------------APGTPPEEAIADLKK 128 (128)
T ss_pred EEE--------------CcCCCHHHHHHHHhC
No 472
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=70.93 E-value=18 Score=32.31 Aligned_cols=75 Identities=23% Similarity=0.225 Sum_probs=49.7
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..+..+.++.+.+.|+.++.+++.+.+... .+ .-.++++.+++.. ++.+- ..++..+.+.+..+.+.|++.+.+
T Consensus 145 ~~~~~~~~~~~~~~ga~~iii~~~~~~g~~-~g--~~~~~i~~i~~~~-~ipvi--~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 145 EVSLEELAKRFEELGVKAIIYTDISRDGTL-SG--PNFELYKELAAAT-GIPVI--ASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeecCCCcc-CC--CCHHHHHHHHHhc-CCCEE--EecCCCCHHHHHHHHHCCCCEEEE
Confidence 345567777888899999999876432221 11 1246677777653 34443 355666788888888899999877
Q ss_pred c
Q 018731 213 N 213 (351)
Q Consensus 213 ~ 213 (351)
+
T Consensus 219 g 219 (234)
T cd04732 219 G 219 (234)
T ss_pred e
Confidence 5
No 473
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=70.92 E-value=36 Score=31.19 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=11.4
Q ss_pred HHHHHHHHHcCCCeeecch
Q 018731 196 LRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~i 214 (351)
++.++.++++|++.|-+.+
T Consensus 19 ~e~l~~~~~~G~~~VEl~~ 37 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSV 37 (279)
T ss_pred HHHHHHHHHcCCCEEEEec
Confidence 4566666666666665543
No 474
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=70.87 E-value=44 Score=31.86 Aligned_cols=131 Identities=19% Similarity=0.302 Sum_probs=76.2
Q ss_pred HHHHHHHHHhCCC--cEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 136 PENTAKAIASWGV--DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 136 i~~~~~~~~~~G~--~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
-.+.++++.+.|+ +-|.+-..++ ....+.++++.|++.+|+..|-+- +. .+.+.+..|.++|+|.+-++
T Consensus 98 ~~~~~~~Lv~ag~~~d~i~iD~a~g------h~~~~~e~I~~ir~~~p~~~vi~g--~V-~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 98 EYDFVDQLAAEGLTPEYITIDIAHG------HSDSVINMIQHIKKHLPETFVIAG--NV-GTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCC------chHHHHHHHHHHHhhCCCCeEEEE--ec-CCHHHHHHHHHcCcCEEEEC
Confidence 3456667777755 8888743332 246889999999999887665331 11 37889999999999998765
Q ss_pred hhchHH-HHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeee-eCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 214 IETVKR-LQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIML-GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 214 ies~~~-~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv-GlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
.-.... ..+...+. ..+| -+.++..+.+. ..+. +|. |=-.+..|+.+.+. +|++.+.++..+
T Consensus 169 ~~~G~~~~t~~~~g~~~~~w--~l~ai~~~~~~-~~ip----VIAdGGI~~~~Di~KaLa----~GA~aV~vG~~~ 233 (326)
T PRK05458 169 IGPGKVCITKIKTGFGTGGW--QLAALRWCAKA-ARKP----IIADGGIRTHGDIAKSIR----FGATMVMIGSLF 233 (326)
T ss_pred CCCCcccccccccCCCCCcc--HHHHHHHHHHH-cCCC----EEEeCCCCCHHHHHHHHH----hCCCEEEechhh
Confidence 322211 11111101 1223 23334444441 2332 222 11367777776654 599988887544
No 475
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=70.80 E-value=14 Score=36.16 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=8.7
Q ss_pred HHHHHHHhCCCCe-EEEeeeeeC
Q 018731 237 VLKHAKLSKKGLI-TKSSIMLGL 258 (351)
Q Consensus 237 ~i~~~~~~~~Gi~-v~~~~IvGl 258 (351)
.|+.+-+ .||+ ++-+||..+
T Consensus 88 ~irNla~--~GI~vicYNFMPv~ 108 (394)
T TIGR00695 88 TLRNLAQ--CGIKTVCYNFMPVL 108 (394)
T ss_pred HHHHHHH--cCCCEEEEEecccc
Confidence 3444444 4554 344444433
No 476
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=70.78 E-value=29 Score=33.55 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=50.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++.+.+.++.+.+.|++.|.|..-.....| ..+.++++.+++..+ +.+++- +++.-+--.-.-.-.++|++.
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P----~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~ 212 (363)
T TIGR02090 138 TDIDFLIKVFKRAEEAGADRINIADTVGVLTP----QKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQ 212 (363)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCCccCH----HHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCE
Confidence 45788888999999999999988433222233 789999999998754 444432 333322222223334689999
Q ss_pred eecch
Q 018731 210 FAHNI 214 (351)
Q Consensus 210 i~~~i 214 (351)
|..++
T Consensus 213 vd~s~ 217 (363)
T TIGR02090 213 VHVTV 217 (363)
T ss_pred EEEEe
Confidence 86543
No 477
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=70.69 E-value=17 Score=32.28 Aligned_cols=74 Identities=16% Similarity=0.088 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCC-CCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc-CCCeee
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDD-IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS-GLDVFA 211 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~-l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a-G~~~i~ 211 (351)
++..+.++.+.+.|+..|.+++..... ... ....+.++.+++. .++.|-+ +++..+.+.+..+.+. |+|.|.
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~---~~~~~~~~~i~~~-~~ipvi~--~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQRYSG---PADWDYIAEIKEA-VSIPVIA--NGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHHcCCC---CCCHHHHHHHHhC-CCCeEEE--eCCCCCHHHHHHHHHhcCCCEEE
Confidence 367777888888899999988765321 111 1123556667764 3555543 5555577777777776 899988
Q ss_pred cc
Q 018731 212 HN 213 (351)
Q Consensus 212 ~~ 213 (351)
++
T Consensus 212 ig 213 (231)
T cd02801 212 IG 213 (231)
T ss_pred Ec
Confidence 76
No 478
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=70.45 E-value=1e+02 Score=29.58 Aligned_cols=183 Identities=14% Similarity=0.063 Sum_probs=101.4
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
..+.+...++++.+.+..-|.-.+... ....+.+.+..+++.+.+..+.+.|.+ .-|.-.+.+.+..-.++|+++|-
T Consensus 25 n~e~~~aii~AAEe~~sPvIlq~s~~~--~~~~g~~~~~~~~~~~ae~~~~VPVal-HLDHg~~~e~i~~Ai~~GFtSVM 101 (347)
T TIGR01521 25 NMEQMRAIMEAADKTDSPVILQASRGA--RSYAGAPFLRHLILAAIEEYPHIPVVM-HQDHGNSPATCQRAIQLGFTSVM 101 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcch--hhhCCHHHHHHHHHHHHHhCCCCcEEE-ECCCCCCHHHHHHHHHcCCCEEe
Confidence 356667777777777877665544332 222236778888888887654455543 33433478999999999999986
Q ss_pred cchhchHHHHhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEee--eeeCC-------CC------------HHHHHHHH
Q 018731 212 HNIETVKRLQRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLG-------ES------------DDDLKEAM 269 (351)
Q Consensus 212 ~~ies~~~~~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--IvGlg-------Et------------~e~~~~~l 269 (351)
+.--.+++ .... +-..+.+...++++.++. .|+.|.+-+ |-|.. +. .-+-.+..
T Consensus 102 iDgS~l~~--~~~~~p~eENI~~Tkevve~Ah~--~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~ 177 (347)
T TIGR01521 102 MDGSLRED--AKTPADYDYNVRVTAEVVAFAHA--VGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAA 177 (347)
T ss_pred ecCcCCcc--cCCCCCHHHHHHHHHHHHHHHHH--cCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHHH
Confidence 63211110 0000 001133344567778888 888775543 32221 11 11347788
Q ss_pred HHHHhCCCCEEeeecccCCCCCccc-ccCCCCHHHHHHHHHHHHhc-CcceeccC
Q 018731 270 ADLRSIDVDILTLGQYLQPTPLHLT-VKEYVTPEKFDFWKAYGESI-GFRYVASG 322 (351)
Q Consensus 270 ~~l~~lg~d~i~i~~~l~PTp~~~~-~~~~v~~~e~~~~~~~~~~~-G~~~~~~~ 322 (351)
+|+++.|+|.+.+. +=+--..+.. +.+....-++++++++.+.+ .+..+.+|
T Consensus 178 ~Fv~~TgvD~LAva-iGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHG 231 (347)
T TIGR01521 178 DFVKKTKVDALAVA-IGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHG 231 (347)
T ss_pred HHHHHHCcCEEehh-cccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeC
Confidence 99999999987763 2111112210 01110113466777776666 46555443
No 479
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=70.45 E-value=35 Score=32.11 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCCeeecchhc---hHHH-----HhhhcCCCCCHHHH----HHHHHHHHHhC-CCCeEEEeeeee--C--C
Q 018731 197 RAVETLVHSGLDVFAHNIET---VKRL-----QRIVRDPRAGYEQS----LEVLKHAKLSK-KGLITKSSIMLG--L--G 259 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies---~~~~-----~~~~r~~~~~~~~~----l~~i~~~~~~~-~Gi~v~~~~IvG--l--g 259 (351)
+.++..+++|+|.|-++.-- ++++ +++...-+.+.+.. ++.++.+++.. .++.+...+-.+ . |
T Consensus 145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence 45677888999998765421 1111 11000012344433 45555665532 344444433221 1 4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeee
Q 018731 260 ESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 260 Et~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.+.++..+.++.+.+.|+|.+.+.
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs 248 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVS 248 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC
Confidence 688999999999999999999885
No 480
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=70.40 E-value=30 Score=30.49 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=44.2
Q ss_pred HHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
++.+.+.|+..+.+|+-+...+. ..+ +.++.+++..| ++.+- ..++..+.+.+..+.++|.+.+.++
T Consensus 134 ~~~~~~~g~~~i~~t~~~~~~~~----~~~-~~~~~l~~~~~~~~pvi--a~gGI~s~edi~~~~~~Ga~gvivG 201 (217)
T cd00331 134 LERALALGAKIIGINNRDLKTFE----VDL-NTTERLAPLIPKDVILV--SESGISTPEDVKRLAEAGADAVLIG 201 (217)
T ss_pred HHHHHHcCCCEEEEeCCCccccC----cCH-HHHHHHHHhCCCCCEEE--EEcCCCCHHHHHHHHHcCCCEEEEC
Confidence 55566789999988865433222 122 55666766543 44443 2345558899999999999999775
No 481
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=70.34 E-value=27 Score=31.34 Aligned_cols=74 Identities=26% Similarity=0.350 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
..+.+.++.+.+.|+.++.+|..+.+-.. .+. .+ ++++.+++.. ++.+-+ .++..+.+.+..+++.|++.+.++
T Consensus 147 ~~~~~~~~~~~~~g~~~ii~tdi~~dGt~-~G~-d~-~~~~~l~~~~-~~~via--sGGv~~~~Dl~~l~~~G~~gvivg 220 (229)
T PF00977_consen 147 IDLEEFAKRLEELGAGEIILTDIDRDGTM-QGP-DL-ELLKQLAEAV-NIPVIA--SGGVRSLEDLRELKKAGIDGVIVG 220 (229)
T ss_dssp EEHHHHHHHHHHTT-SEEEEEETTTTTTS-SS---H-HHHHHHHHHH-SSEEEE--ESS--SHHHHHHHHHTTECEEEES
T ss_pred cCHHHHHHHHHhcCCcEEEEeeccccCCc-CCC-CH-HHHHHHHHHc-CCCEEE--ecCCCCHHHHHHHHHCCCcEEEEe
Confidence 45777888889999999999987753221 222 22 6677776654 455543 566668899999999999988664
No 482
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.27 E-value=93 Score=28.94 Aligned_cols=91 Identities=22% Similarity=0.341 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCC
Q 018731 168 HFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKG 247 (351)
Q Consensus 168 ~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~G 247 (351)
.+.+.++.+++..|...|++-. .+.+.+....++|.|.|.+. +.+.++..++++.+++ .|
T Consensus 168 ~i~~av~~~r~~~~~~kIeVEv----~~leea~~a~~agaDiI~LD--------------n~~~e~l~~~v~~l~~--~~ 227 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVEVEV----ESLEDALKAAKAGADIIMLD--------------NMTPEEIREVIEALKR--EG 227 (278)
T ss_pred HHHHHHHHHHHhCCCCcEEEEe----CCHHHHHHHHHcCcCEEEEC--------------CCCHHHHHHHHHHHHh--cC
Confidence 4667777778776655555432 26788888899999988541 3366677777777766 44
Q ss_pred CeEEE-eeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 248 LITKS-SIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 248 i~v~~-~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
..-.. -..-| |=|.+.+.+ ..+.|+|.+.++
T Consensus 228 ~~~~~~leaSG-GI~~~ni~~----yA~tGvD~Is~g 259 (278)
T PRK08385 228 LRERVKIEVSG-GITPENIEE----YAKLDVDVISLG 259 (278)
T ss_pred cCCCEEEEEEC-CCCHHHHHH----HHHcCCCEEEeC
Confidence 32111 11223 667666655 456899999986
No 483
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=70.25 E-value=74 Score=29.57 Aligned_cols=90 Identities=10% Similarity=0.206 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCC
Q 018731 168 HFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKG 247 (351)
Q Consensus 168 ~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~G 247 (351)
.+.+.++.+|+..|+..|++-. .+.+.+....++|+|.|.+. +.+.++..+.++.+++..++
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv----~tleea~ea~~~GaDiI~lD--------------n~~~e~l~~~v~~l~~~~~~ 235 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEA----DTIEQALTVLQASPDILQLD--------------KFTPQQLHHLHERLKFFDHI 235 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEEC----CCHHHHHHHHHcCcCEEEEC--------------CCCHHHHHHHHHHHhccCCC
Confidence 4678888888877665554422 26788888899999998542 35777888888877642244
Q ss_pred CeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 248 LITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 248 i~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+.+ ...| |=|.+.+.+ ..+.|+|.+.++
T Consensus 236 ~~l---easG-GI~~~ni~~----ya~~GvD~is~g 263 (277)
T TIGR01334 236 PTL---AAAG-GINPENIAD----YIEAGIDLFITS 263 (277)
T ss_pred EEE---EEEC-CCCHHHHHH----HHhcCCCEEEeC
Confidence 322 1223 666666544 467899998885
No 484
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=70.20 E-value=14 Score=34.35 Aligned_cols=80 Identities=11% Similarity=0.062 Sum_probs=51.0
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEec--cCCCCCCCCcHHHHHHHHHHHHHhCCC-cEEEEeecC--CCCCHHHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLTSD--FRGDLRAVETLVH 204 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltg--g~~~~l~~~~~~~~~~li~~ik~~~p~-i~i~~~~~~--~~~~~e~l~~L~~ 204 (351)
..+.+...+.++.+.+.|++.+++.| |+...++ .+.-.++++.+.+...+ +.|-+-+.. ....-+.++..++
T Consensus 18 ~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls---~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~ 94 (292)
T PRK03170 18 SVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLT---HEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEK 94 (292)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCC---HHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHH
Confidence 46677888999999999999998865 4444444 35566666666654333 333221211 1112366777888
Q ss_pred cCCCeeec
Q 018731 205 SGLDVFAH 212 (351)
Q Consensus 205 aG~~~i~~ 212 (351)
+|+|.+.+
T Consensus 95 ~G~d~v~~ 102 (292)
T PRK03170 95 AGADGALV 102 (292)
T ss_pred cCCCEEEE
Confidence 89999865
No 485
>TIGR03586 PseI pseudaminic acid synthase.
Probab=69.89 E-value=1e+02 Score=29.34 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=61.2
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCC---------------C------------CcHHHHHHHHHHHHHhCCCcE
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIP---------------D------------GGSGHFARTVKAMKKQKPDIM 184 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~---------------~------------~~~~~~~~li~~ik~~~p~i~ 184 (351)
+.+...+.++.+.+.|++-|-|+.-.++.+. + .+.+++.++.+..++. |+.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~--Gi~ 92 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKEL--GLT 92 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHh--CCc
Confidence 4666778888888889987777543321110 0 0123334444444443 443
Q ss_pred EEEeecCCCCCHHHHHHHHHcCCCeeecch-hc--h---HHHHhh-----hcCCCCCHHHHHHHHHHHHHhCCCC
Q 018731 185 VECLTSDFRGDLRAVETLVHSGLDVFAHNI-ET--V---KRLQRI-----VRDPRAGYEQSLEVLKHAKLSKKGL 248 (351)
Q Consensus 185 i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i-es--~---~~~~~~-----~r~~~~~~~~~l~~i~~~~~~~~Gi 248 (351)
+ ++.- .+.+.++.+.+.|++.+.++- +. . +.+-+. +.....+.+++..+++.+.+ .|-
T Consensus 93 ~--~stp--fd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~--~g~ 161 (327)
T TIGR03586 93 I--FSSP--FDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAVEACRE--AGC 161 (327)
T ss_pred E--EEcc--CCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHH--CCC
Confidence 3 2332 378899999999999887642 11 1 111110 11012477888888888876 554
No 486
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.83 E-value=74 Score=27.57 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=68.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
++++..+.++.+.+.|++.+-++--++ .-.++++.+++..+.+.+..-+ .+..+.++...++|.+.+.
T Consensus 22 ~~~~~~~~~~~~~~~Gv~~vqlr~k~~---------~~~e~~~~~~~~~~~~~~g~gt---vl~~d~~~~A~~~gAdgv~ 89 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMRLIEITWNSD---------QPAELISQLREKLPECIIGTGT---ILTLEDLEEAIAAGAQFCF 89 (187)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCC---------CHHHHHHHHHHhCCCcEEeEEE---EEcHHHHHHHHHcCCCEEE
Confidence 567888899999999999998864322 1234555555555544444322 2356899999999999884
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.+ +.-.+.++ ..+. .++ ..++| -.|.+++.+.. +.|+|.+.+
T Consensus 90 ~p---------------~~~~~~~~---~~~~--~~~----~~i~G-~~t~~e~~~A~----~~Gadyv~~ 131 (187)
T PRK07455 90 TP---------------HVDPELIE---AAVA--QDI----PIIPG-ALTPTEIVTAW----QAGASCVKV 131 (187)
T ss_pred CC---------------CCCHHHHH---HHHH--cCC----CEEcC-cCCHHHHHHHH----HCCCCEEEE
Confidence 32 11122222 2223 444 35677 57777765554 589999888
No 487
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=69.72 E-value=40 Score=31.90 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=40.7
Q ss_pred CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------cHHHHHHHHHHHHHhCCCcEE
Q 018731 127 NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-------GSGHFARTVKAMKKQKPDIMV 185 (351)
Q Consensus 127 ~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~-------~~~~~~~li~~ik~~~p~i~i 185 (351)
+..+.+.+++.++++.+.+.|++.|.|-|.. . ..+. .-.-+.+.++.||+.+|++.|
T Consensus 52 g~~r~s~d~l~~~v~~~~~~Gi~av~LFgv~-~-~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~v 115 (323)
T PRK09283 52 GVYRLSIDLLVKEAEEAVELGIPAVALFGVP-E-LKDEDGSEAYNPDGLVQRAIRAIKKAFPELGV 115 (323)
T ss_pred CceeeCHHHHHHHHHHHHHCCCCEEEEeCcC-C-CCCcccccccCCCCHHHHHHHHHHHhCCCcEE
Confidence 3344567889999999999999999887762 1 2110 012467899999999998653
No 488
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=69.71 E-value=33 Score=33.38 Aligned_cols=79 Identities=18% Similarity=0.054 Sum_probs=50.3
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++.+.+.++.+.+.|+..|.|..-..... ...+.++++.+++.. ++.+++- +++.-+--.-.-.-.++|++.
T Consensus 142 ~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~----P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~ 216 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAGADRVRFCDTVGILD----PFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQ 216 (378)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCC----HHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCE
Confidence 4578888889988899999998843332223 378999999998875 4444431 333222222222334799999
Q ss_pred eecch
Q 018731 210 FAHNI 214 (351)
Q Consensus 210 i~~~i 214 (351)
|...+
T Consensus 217 vd~tv 221 (378)
T PRK11858 217 VHTTV 221 (378)
T ss_pred EEEee
Confidence 86544
No 489
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=69.70 E-value=27 Score=31.49 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
-.+.+.++.+...|+.++.+|..+.+-... + .=.++++.+.+. .++.+.+ .++..+.+.+..+.++|++.+.++
T Consensus 148 ~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~-G--~~~~li~~l~~~-~~ipvi~--~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 148 LNLFSFVRQLSDIPLGGIIYTDIAKDGKMS-G--PNFELTGQLVKA-TTIPVIA--SGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccCcCCCC-c--cCHHHHHHHHHh-CCCCEEE--eCCCCCHHHHHHHHHcCCCEEEEh
Confidence 345667777888999999998876432211 1 113455555554 2445443 456668899999999999998765
No 490
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=69.44 E-value=16 Score=34.94 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=50.9
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC-CC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG-LD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG-~~ 208 (351)
.++++..+.++.+.+.|+..|.+++|.....+ ........++.+.+++.. ++.|- ..+...+.+.++.+.+.| +|
T Consensus 224 ~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~-~ipVi--~~G~i~~~~~a~~~l~~g~~D 300 (337)
T PRK13523 224 LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA-NIATG--AVGLITSGAQAEEILQNNRAD 300 (337)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc-CCcEE--EeCCCCCHHHHHHHHHcCCCC
Confidence 35677788888888899999999887621000 000122456777788753 34433 244445788888877776 88
Q ss_pred eeecc
Q 018731 209 VFAHN 213 (351)
Q Consensus 209 ~i~~~ 213 (351)
.|.++
T Consensus 301 ~V~~g 305 (337)
T PRK13523 301 LIFIG 305 (337)
T ss_pred hHHhh
Confidence 87654
No 491
>PLN02858 fructose-bisphosphate aldolase
Probab=69.32 E-value=2.2e+02 Score=32.87 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhC
Q 018731 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSK 245 (351)
Q Consensus 166 ~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~ 245 (351)
.+ +..++....+.. .+.|.+ +-|.-.+.+.+..-.++|++.|-+.--.+ ++ ..+.....+.++.++.
T Consensus 1155 ~~-~~~~~~~~a~~~-~vpV~l-HLDHg~~~~~i~~ai~~Gf~SVM~DgS~l-~~-------eeNi~~t~~vv~~Ah~-- 1221 (1378)
T PLN02858 1155 IP-LVSCCIAAAEQA-SVPITV-HFDHGTSKHELLEALELGFDSVMVDGSHL-SF-------TENISYTKSISSLAHS-- 1221 (1378)
T ss_pred HH-HHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHhCCCEEEEeCCCC-CH-------HHHHHHHHHHHHHHHH--
Confidence 45 666666665543 445433 33433477889999999999886531111 01 1123334567778888
Q ss_pred CCCeEEEee--eeeCCCC---------HHHHHHHHHHHHhCCCCEEee
Q 018731 246 KGLITKSSI--MLGLGES---------DDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 246 ~Gi~v~~~~--IvGlgEt---------~e~~~~~l~~l~~lg~d~i~i 282 (351)
.|+.|.+-+ |-|-.+. ..+..+..+|+++.|+|.+.+
T Consensus 1222 ~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAv 1269 (1378)
T PLN02858 1222 KGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAV 1269 (1378)
T ss_pred cCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEee
Confidence 788776543 4333111 125578889999999998776
No 492
>PLN02321 2-isopropylmalate synthase
Probab=69.25 E-value=28 Score=36.34 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=47.2
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC-----cEEEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD-----IMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~-----i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+++.+.+.++.+.+.|+..|.|..-..-.+| ..+.++++.+++..|+ +.+++ +++.-+--.-.-.-.++
T Consensus 237 td~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P----~~v~~li~~l~~~~~~~~~v~i~vH~-HND~GlAvANslaAv~A 311 (632)
T PLN02321 237 SDPEFLYRILGEVIKAGATTLNIPDTVGYTLP----SEFGQLIADIKANTPGIENVIISTHC-QNDLGLSTANTLAGAHA 311 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccCCCH----HHHHHHHHHHHHhcCCCCCceEEEEe-CCCCCHHHHHHHHHHHh
Confidence 34667778888888888888888432222233 6788888888887654 23333 33321111222223578
Q ss_pred CCCeeecch
Q 018731 206 GLDVFAHNI 214 (351)
Q Consensus 206 G~~~i~~~i 214 (351)
|+++|...+
T Consensus 312 GA~~Vd~Ti 320 (632)
T PLN02321 312 GARQVEVTI 320 (632)
T ss_pred CCCEEEEec
Confidence 898886543
No 493
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=69.23 E-value=14 Score=34.19 Aligned_cols=81 Identities=12% Similarity=0.056 Sum_probs=51.8
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEec--cCCCCCCCCcHHHHHHHHHHHHHhCCC-cEEEEeec--CCCCCHHHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLTS--DFRGDLRAVETLVH 204 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltg--g~~~~l~~~~~~~~~~li~~ik~~~p~-i~i~~~~~--~~~~~~e~l~~L~~ 204 (351)
..+.+...+.++.+.+.|++.+++.| |+...+. .+...++++.+.+...+ +.+-+... ......+.++...+
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt---~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~ 93 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVCGTTGESPTLS---DEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEK 93 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCC---HHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHH
Confidence 46777888999999999999998865 4444455 46666777766665433 33322111 11112466777888
Q ss_pred cCCCeeecc
Q 018731 205 SGLDVFAHN 213 (351)
Q Consensus 205 aG~~~i~~~ 213 (351)
+|+|.+.+.
T Consensus 94 ~G~d~v~~~ 102 (284)
T cd00950 94 AGADAALVV 102 (284)
T ss_pred cCCCEEEEc
Confidence 899988653
No 494
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=69.01 E-value=91 Score=28.32 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCC-CCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc-CCCeee
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDI-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS-GLDVFA 211 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l-~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a-G~~~i~ 211 (351)
-++.+.++.+.+.|+.+|.+|..+.+-+ ..-+.+-+.++.+.+ ++.+- ..++..+.+-++.|++. |+..+-
T Consensus 147 ~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~-----~ipvi--aSGGv~s~~Di~~l~~~~G~~GvI 219 (241)
T COG0106 147 VELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV-----DIPVI--ASGGVSSLDDIKALKELSGVEGVI 219 (241)
T ss_pred CCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh-----CcCEE--EecCcCCHHHHHHHHhcCCCcEEE
Confidence 4677888899999999999998764322 222334444444433 34443 35666688999999999 888876
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHH
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLK 239 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~ 239 (351)
+| ..+|. .+.+..+.++.++
T Consensus 220 vG----~ALy~----g~~~l~ea~~~~~ 239 (241)
T COG0106 220 VG----RALYE----GKFTLEEALACVR 239 (241)
T ss_pred Ee----hHHhc----CCCCHHHHHHHHh
Confidence 65 44553 2467777776654
No 495
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=68.74 E-value=75 Score=27.25 Aligned_cols=81 Identities=12% Similarity=0.160 Sum_probs=52.6
Q ss_pred ecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-----CCCHH
Q 018731 189 TSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-----GESDD 263 (351)
Q Consensus 189 ~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-----gEt~e 263 (351)
.|.+..++..++.+++.|...+..++++.+-. ..+.+++.+.+....+ +| ++|+-+ ..|.+
T Consensus 103 ~P~G~~~~~~~~~l~~~G~~~v~w~~~~~D~~-------~~~~~~i~~~~~~~~~--~g-----~Iil~Hd~~~~~~t~~ 168 (191)
T TIGR02764 103 PPSGAFNKAVLKAAESLGYTVVHWSVDSRDWK-------NPGVESIVDRVVKNTK--PG-----DIILLHASDSAKQTVK 168 (191)
T ss_pred CCCcCCCHHHHHHHHHcCCeEEEecCCCCccC-------CCCHHHHHHHHHhcCC--CC-----CEEEEeCCCCcHhHHH
Confidence 35555688999999999999887777665421 2245555554322222 44 233333 24677
Q ss_pred HHHHHHHHHHhCCCCEEeee
Q 018731 264 DLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 264 ~~~~~l~~l~~lg~d~i~i~ 283 (351)
.+...+..+++.|...+++.
T Consensus 169 ~l~~~i~~l~~~Gy~~vtl~ 188 (191)
T TIGR02764 169 ALPTIIKKLKEKGYEFVTIS 188 (191)
T ss_pred HHHHHHHHHHHCCCEEEEHH
Confidence 88888899999998887763
No 496
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=68.71 E-value=29 Score=35.14 Aligned_cols=79 Identities=11% Similarity=0.173 Sum_probs=50.4
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC---cEEEE-eecCCCCCHHHHHHHHHcC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD---IMVEC-LTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~---i~i~~-~~~~~~~~~e~l~~L~~aG 206 (351)
.+++.+.+.++.+.+.|+..|.|..-..-..| ..+.++++.+++..|+ +.+.+ .+++.-+--.-.-.-.++|
T Consensus 143 ~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P----~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aG 218 (494)
T TIGR00973 143 TEIPFLARIVEAAINAGATTINIPDTVGYALP----AEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNG 218 (494)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCH----HHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhC
Confidence 45678888899888999999998433222233 7899999999887663 33332 1344322222223334699
Q ss_pred CCeeecc
Q 018731 207 LDVFAHN 213 (351)
Q Consensus 207 ~~~i~~~ 213 (351)
+++|...
T Consensus 219 a~~vd~t 225 (494)
T TIGR00973 219 ARQVECT 225 (494)
T ss_pred CCEEEEE
Confidence 9998643
No 497
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=68.63 E-value=1.2e+02 Score=29.66 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCCcEE--EEeecCCCCCHHH-HHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCC
Q 018731 170 ARTVKAMKKQKPDIMV--ECLTSDFRGDLRA-VETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKK 246 (351)
Q Consensus 170 ~~li~~ik~~~p~i~i--~~~~~~~~~~~e~-l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~ 246 (351)
.++++.+++..|+..+ ..-+.+. +.. ++.+.++|.|.+.+..++.. +...++++.+++ .
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~Di---~~~vv~~~a~aGAD~vTVH~ea~~-------------~ti~~ai~~akk--~ 275 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTLDT---GNLEARMAADATADAVVISGLAPI-------------STIEKAIHEAQK--T 275 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEecccCh---hhHHHHHHHhcCCCEEEEeccCCH-------------HHHHHHHHHHHH--c
Confidence 5678888887666333 2222221 233 77899999999987655432 223456677888 8
Q ss_pred CCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeec
Q 018731 247 GLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 247 Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
|+.+..+ +++. +|..+..+-+ ..++|.+.++.
T Consensus 276 GikvgVD-~lnp-~tp~e~i~~l----~~~vD~Vllht 307 (391)
T PRK13307 276 GIYSILD-MLNV-EDPVKLLESL----KVKPDVVELHR 307 (391)
T ss_pred CCEEEEE-EcCC-CCHHHHHHHh----hCCCCEEEEcc
Confidence 8765443 3332 4544443332 56888887753
No 498
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=68.40 E-value=58 Score=29.45 Aligned_cols=41 Identities=12% Similarity=-0.019 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCCc-EEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 169 FARTVKAMKKQKPDI-MVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 169 ~~~li~~ik~~~p~i-~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.++.+++. |+ .|++..+......+..+.+.+.|+....
T Consensus 17 l~~~l~~~a~~--Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQC--GFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHh--CCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 55666666665 32 4554443322123455556677777543
No 499
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=68.33 E-value=51 Score=28.04 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCC---CHHHHHHHHHcCCCeeecc
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG---DLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~---~~e~l~~L~~aG~~~i~~~ 213 (351)
.+..+.+...+ ..|+|.|+.+ +.+.++.+.+++.+|++.|.....+... .++.++.+.+++.|.|.++
T Consensus 36 ~~ll~~~~~~~-~~v~llG~~~--------~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 36 PALLELAAQKG-LRVFLLGAKP--------EVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVG 106 (171)
T ss_pred HHHHHHHHHcC-CeEEEECCCH--------HHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 44455555444 4577767654 5677788889999999988653333221 2346899999999999887
Q ss_pred hhc
Q 018731 214 IET 216 (351)
Q Consensus 214 ies 216 (351)
+-+
T Consensus 107 lG~ 109 (171)
T cd06533 107 LGA 109 (171)
T ss_pred CCC
Confidence 544
No 500
>PRK13753 dihydropteroate synthase; Provisional
Probab=67.83 E-value=1.1e+02 Score=28.61 Aligned_cols=75 Identities=16% Similarity=0.122 Sum_probs=48.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCC-CCCC----CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDR-DDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~-~~l~----~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+++...+.++.+.+.|+.-|-+.|... +... ..+.+++..+++.+++. +..|.+ |. ...+.++...++
T Consensus 22 ~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~--~~~ISI---DT-~~~~va~~al~a 95 (279)
T PRK13753 22 LDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ--MHRVSI---DS-FQPETQRYALKR 95 (279)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC--CCcEEE---EC-CCHHHHHHHHHc
Confidence 5678888899999999999888865432 1111 01345666888888765 333332 22 267777877788
Q ss_pred CCCeee
Q 018731 206 GLDVFA 211 (351)
Q Consensus 206 G~~~i~ 211 (351)
|++.|+
T Consensus 96 GadiIN 101 (279)
T PRK13753 96 GVGYLN 101 (279)
T ss_pred CCCEEE
Confidence 887765
Done!