Query 018732
Match_columns 351
No_of_seqs 136 out of 1534
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 05:12:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lat_A Dolichyl-diphosphooligo 10.2 2.5E+02 0.0084 17.2 2.8 17 333-349 8-24 (37)
2 4g1u_A Hemin transport system 9.4 1.3E+02 0.0046 28.0 2.1 11 296-306 172-182 (357)
3 2zy9_A Mg2+ transporter MGTE; 8.3 3.1E+02 0.011 26.2 4.3 24 43-66 415-438 (473)
4 2a9h_A Voltage-gated potassium 8.2 7E+02 0.024 19.8 5.9 17 330-346 112-128 (155)
5 2l9u_A Receptor tyrosine-prote 8.1 2.4E+02 0.0083 16.9 2.1 11 298-308 20-30 (40)
6 1rkl_A Dolichyl-diphosphooligo 7.3 2.5E+02 0.0086 17.0 2.0 16 334-349 9-24 (36)
7 3eff_K Voltage-gated potassium 6.9 6.9E+02 0.024 19.0 5.2 19 329-347 67-85 (139)
8 1v54_L VIIIA, cytochrome C oxi 6.1 5.9E+02 0.02 16.2 3.7 19 332-350 24-42 (47)
9 3j1r_A Archaeal adhesion filam 5.7 4.6E+02 0.016 14.5 3.0 16 293-308 8-23 (26)
10 2zt9_E Cytochrome B6-F complex 4.8 5.8E+02 0.02 14.9 2.5 14 293-306 10-23 (31)
No 1
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=10.24 E-value=2.5e+02 Score=17.18 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 018732 333 ANASLLLGAGCMSVLAK 349 (351)
Q Consensus 333 ~~~~~~lG~~~ma~i~~ 349 (351)
..++.++|.+.|.++-.
T Consensus 8 ~~lan~lG~~~~~LIVl 24 (37)
T 2lat_A 8 AIFANMLGVSLFLLVVL 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788999999988753
No 2
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=9.38 E-value=1.3e+02 Score=27.98 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 018732 296 IFNSASAGILI 306 (351)
Q Consensus 296 il~alaaGtfl 306 (351)
++.|++.+.++
T Consensus 172 iL~Giavs~~~ 182 (357)
T 4g1u_A 172 LLAGIAINALC 182 (357)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455544443
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=8.26 E-value=3.1e+02 Score=26.24 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHcHHhhhcccc
Q 018732 43 LAAIATILVAGALGVSLPLLGKKI 66 (351)
Q Consensus 43 i~~~~~i~~~sllg~~lP~~~~~~ 66 (351)
+..++.+.+++++|+++|++.+|+
T Consensus 415 ~a~~~~~~~a~~~g~~~p~~~~~~ 438 (473)
T 2zy9_A 415 VSLVLIVFFANLVGAMLPFLLRRL 438 (473)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444666777777777766653
No 4
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=8.15 E-value=7e+02 Score=19.78 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018732 330 QLGANASLLLGAGCMSV 346 (351)
Q Consensus 330 ~~~~~~~~~lG~~~ma~ 346 (351)
|++..+.++.|+.+++.
T Consensus 112 r~~~~~~~l~Gv~~~a~ 128 (155)
T 2a9h_A 112 RCVAVVVMVAGITSYGL 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555444
No 5
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=8.08 E-value=2.4e+02 Score=16.90 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=7.4
Q ss_pred HHHHHHHHHHH
Q 018732 298 NSASAGILIYM 308 (351)
Q Consensus 298 ~alaaGtflYV 308 (351)
.-+-+|||+|-
T Consensus 20 f~~lg~tflyw 30 (40)
T 2l9u_A 20 FMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhCceeEEE
Confidence 34557888884
No 6
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=7.35 E-value=2.5e+02 Score=17.02 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 018732 334 NASLLLGAGCMSVLAK 349 (351)
Q Consensus 334 ~~~~~lG~~~ma~i~~ 349 (351)
.++.++|.+.|.++-.
T Consensus 9 ~lan~lG~~~~~LIvl 24 (36)
T 1rkl_A 9 SLAITFGIVMMTLIVI 24 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999999988753
No 7
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=6.87 E-value=6.9e+02 Score=19.00 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018732 329 LQLGANASLLLGAGCMSVL 347 (351)
Q Consensus 329 ~~~~~~~~~~lG~~~ma~i 347 (351)
.|++..+.+++|+.+++..
T Consensus 67 ~r~~~~~~~~~G~~~~~~~ 85 (139)
T 3eff_K 67 GRLVAVVVMVAGITSFGLV 85 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556666666665543
No 8
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=6.13 E-value=5.9e+02 Score=16.18 Aligned_cols=19 Identities=5% Similarity=-0.123 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 018732 332 GANASLLLGAGCMSVLAKW 350 (351)
Q Consensus 332 ~~~~~~~lG~~~ma~i~~w 350 (351)
.-.+.+.+||++-.+++.|
T Consensus 24 ~~~~f~g~GF~~PF~i~~~ 42 (47)
T 1v54_L 24 MMTLFFGSGFAAPFFIVRH 42 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 3456788899998888876
No 9
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=5.70 E-value=4.6e+02 Score=14.52 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 018732 293 VEGIFNSASAGILIYM 308 (351)
Q Consensus 293 ~~gil~alaaGtflYV 308 (351)
+.-|+.+++++.++|.
T Consensus 8 ~lLIviav~aaVllyl 23 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456778888888886
No 10
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=4.81 E-value=5.8e+02 Score=14.86 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHH
Q 018732 293 VEGIFNSASAGILI 306 (351)
Q Consensus 293 ~~gil~alaaGtfl 306 (351)
..++..++|.|.++
T Consensus 10 ~l~~~~~iA~GL~f 23 (31)
T 2zt9_E 10 FLALFTGIAAGLLF 23 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34566777777654
Done!