BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018735
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 57 TFLVVGIAFVPIGITSLLASRDVVEIVDR---YETDCIPVANRTDKVAFIQSNASKTCTR 113
+V G+ P+ + S + ++ +I + YE + V D++ + N T
Sbjct: 331 AMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATS 390
Query: 114 QITHM-------KRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSE 155
++H +PV + L+ Q ++VK E KK KT E
Sbjct: 391 YLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQE 439
>pdb|1QQK|A Chain A, The Crystal Structure Of Fibroblast Growth Factor 7
(Keratinocyte Growth Factor)
pdb|1QQK|B Chain B, The Crystal Structure Of Fibroblast Growth Factor 7
(Keratinocyte Growth Factor)
Length = 140
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 258 KLYGKIEVDLEENDIIDVILENNYNTYS 285
KLY K E + E+ + ++ILEN+YNTY+
Sbjct: 72 KLYAKKECN-EDCNFKELILENHYNTYA 98
>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
Length = 383
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 224 GTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENN--- 280
G++ A+ N + ++ L+V+ + L FR LY I +DL + I +E+
Sbjct: 80 GSMTTPANWNSPLRPGEKYPLVVF--SHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRS 137
Query: 281 -YNTYSFSGKKKLVLSTTSWL 300
TY F + + SWL
Sbjct: 138 ASATYYFKDQSAAEIGDKSWL 158
>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 383
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 233 NESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENN----YNTYSFSG 288
N + PL E + + + L FR LY I +DL + I +E+ TY F
Sbjct: 87 NWNSPLRPGEKYPLVVFSHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKD 146
Query: 289 KKKLVLSTTSWL 300
+ + SWL
Sbjct: 147 QSAAEIGDKSWL 158
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 57 TFLVVGIAFVPIGITSLLASRDVVEIVDR---YETDCIPVANRTDKVAFIQSNASKTCTR 113
+V G+ P+ + S + ++ +I + YE + V D++ + N T
Sbjct: 160 AMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATS 219
Query: 114 QITHM-------KRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSE 155
++H +PV + L+ Q ++VK E KK KT E
Sbjct: 220 YLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQE 268
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 57 TFLVVGIAFVPIGITSLLASRDVVEIVDR---YETDCIPVANRTDKVAFIQSNASKTCTR 113
+V G+ P+ + S + ++ +I + YE + V D++ + N T
Sbjct: 160 AMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATS 219
Query: 114 QITHM-------KRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSE 155
++H +PV + L+ Q ++VK E KK KT E
Sbjct: 220 YLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQE 268
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 57 TFLVVGIAFVPIGITSLLASRDVVEIVDR---YETDCIPVANRTDKVAFIQSNASKTCTR 113
+V G+ P+ + S + ++ +I + YE + V D++ + N T
Sbjct: 160 AMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATS 219
Query: 114 QITHM-------KRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSE 155
++H +PV + L+ Q ++VK E KK KT E
Sbjct: 220 YLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQE 268
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 57 TFLVVGIAFVPIGITSLLASRDVVEIVDR---YETDCIPVANRTDKVAFIQSNASKTCTR 113
+V G+ P+ + S + ++ +I + YE + V D++ + N T
Sbjct: 161 AMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATS 220
Query: 114 QITHM-------KRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSE 155
++H +PV + L+ Q ++VK E KK KT E
Sbjct: 221 YLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQE 269
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 57 TFLVVGIAFVPIGITSLLASRDVVEIVDR---YETDCIPVANRTDKVAFIQSNASKTCTR 113
+V G+ P+ + S + ++ +I + YE + V D++ + N T
Sbjct: 160 AMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATS 219
Query: 114 QITHM-------KRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSE 155
++H +PV + L+ Q ++VK E KK KT E
Sbjct: 220 YLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQE 268
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 57 TFLVVGIAFVPIGITSLLASRDVVEIVDR---YETDCIPVANRTDKVAFIQSNASKTCTR 113
+V G+ P+ + S + ++ +I + YE + V D++ + N T
Sbjct: 209 AMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATS 268
Query: 114 QITHM-------KRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSE 155
++H +PV + L+ Q ++VK E KK KT E
Sbjct: 269 YLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQE 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,286,290
Number of Sequences: 62578
Number of extensions: 439964
Number of successful extensions: 920
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 11
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)