Query 018735
Match_columns 351
No_of_seqs 124 out of 523
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:36:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2952 Cell cycle control pro 100.0 2E-112 4E-117 814.5 25.8 327 17-347 8-351 (351)
2 COG5035 CDC50 Cell cycle contr 100.0 3.9E-99 8E-104 709.0 22.7 319 24-347 15-372 (372)
3 PF03381 CDC50: LEM3 (ligand-e 100.0 4.1E-83 8.8E-88 611.7 22.2 259 72-340 1-278 (278)
4 PF01102 Glycophorin_A: Glycop 88.8 0.38 8.2E-06 41.2 2.9 27 308-334 65-91 (122)
5 COG1470 Predicted membrane pro 64.2 27 0.0006 36.4 7.7 37 264-301 453-489 (513)
6 PF11797 DUF3324: Protein of u 55.8 9.2 0.0002 33.0 2.4 48 248-296 84-131 (140)
7 PF01102 Glycophorin_A: Glycop 52.2 22 0.00048 30.4 4.1 30 305-334 65-94 (122)
8 PF13120 DUF3974: Domain of un 50.7 17 0.00036 30.0 2.9 38 306-348 3-40 (126)
9 PF05915 DUF872: Eukaryotic pr 48.9 44 0.00095 28.2 5.3 22 54-75 46-67 (115)
10 PF12669 P12: Virus attachment 44.9 16 0.00035 27.0 1.9 26 312-337 2-27 (58)
11 PF10204 DuoxA: Dual oxidase m 44.6 18 0.0004 35.2 2.7 26 312-337 246-271 (281)
12 PF06365 CD34_antigen: CD34/Po 39.1 34 0.00073 31.8 3.4 24 309-332 103-126 (202)
13 PF12273 RCR: Chitin synthesis 38.5 21 0.00045 30.4 1.8 23 52-74 1-23 (130)
14 PF12158 DUF3592: Protein of u 37.8 49 0.0011 27.7 4.1 24 51-74 121-147 (148)
15 PF10177 DUF2371: Uncharacteri 34.9 51 0.0011 28.9 3.7 24 52-75 36-59 (141)
16 PF15048 OSTbeta: Organic solu 34.5 53 0.0012 28.2 3.6 26 309-334 37-62 (125)
17 PF14991 MLANA: Protein melan- 33.2 11 0.00023 31.9 -0.7 42 284-337 11-52 (118)
18 PF05915 DUF872: Eukaryotic pr 32.3 38 0.00082 28.6 2.4 27 303-329 42-68 (115)
19 PF12606 RELT: Tumour necrosis 32.0 48 0.001 24.0 2.6 24 310-333 3-26 (50)
20 PF04835 Pox_A9: A9 protein co 31.9 76 0.0016 23.3 3.5 26 55-80 26-51 (54)
21 PF01299 Lamp: Lysosome-associ 31.3 35 0.00076 33.2 2.4 26 310-335 273-298 (306)
22 PF09788 Tmemb_55A: Transmembr 31.0 49 0.0011 31.8 3.2 23 54-76 197-219 (256)
23 PF05399 EVI2A: Ectropic viral 30.4 80 0.0017 29.7 4.4 20 307-326 130-149 (227)
24 PF05393 Hum_adeno_E3A: Human 29.1 82 0.0018 25.6 3.7 30 300-329 26-55 (94)
25 PF11014 DUF2852: Protein of u 28.4 82 0.0018 26.8 3.8 25 49-74 7-31 (115)
26 PF13908 Shisa: Wnt and FGF in 27.0 24 0.00051 31.6 0.3 7 243-249 56-62 (179)
27 PF08507 COPI_assoc: COPI asso 26.4 1E+02 0.0022 26.3 4.1 28 308-335 85-112 (136)
28 PF09788 Tmemb_55A: Transmembr 26.3 50 0.0011 31.7 2.4 46 298-344 187-233 (256)
29 PRK02935 hypothetical protein; 26.1 85 0.0018 26.3 3.4 25 50-74 35-59 (110)
30 PF02038 ATP1G1_PLM_MAT8: ATP1 25.2 46 0.001 24.1 1.5 25 307-331 14-38 (50)
31 PF13038 DUF3899: Domain of un 23.3 79 0.0017 25.0 2.7 23 57-79 4-26 (92)
32 PF02009 Rifin_STEVOR: Rifin/s 23.2 83 0.0018 31.0 3.3 30 307-336 258-287 (299)
33 PF08114 PMP1_2: ATPase proteo 22.8 72 0.0016 22.2 2.0 23 310-332 13-35 (43)
34 PF09925 DUF2157: Predicted me 22.1 82 0.0018 27.1 2.8 25 53-77 31-55 (145)
35 PF06781 UPF0233: Uncharacteri 22.0 2.4E+02 0.0051 22.8 5.1 13 48-60 27-39 (87)
36 PF10260 SAYSvFN: Uncharacteri 21.9 1.2E+02 0.0027 23.5 3.4 34 315-348 19-54 (71)
37 PF10183 ESSS: ESSS subunit of 21.8 2.9E+02 0.0063 22.7 5.9 21 55-75 61-81 (105)
38 PF11023 DUF2614: Protein of u 21.4 1.2E+02 0.0025 25.8 3.4 24 51-74 35-58 (114)
39 PF07214 DUF1418: Protein of u 21.4 1.4E+02 0.003 24.6 3.7 36 295-332 34-69 (96)
40 PF11381 DUF3185: Protein of u 21.3 92 0.002 23.3 2.5 24 302-325 35-58 (59)
41 KOG0196 Tyrosine kinase, EPH ( 21.2 3E+02 0.0066 31.1 7.3 55 266-323 504-565 (996)
42 PF04415 DUF515: Protein of un 21.1 89 0.0019 32.2 3.1 55 20-81 5-61 (416)
43 PF07234 DUF1426: Protein of u 21.0 1.1E+02 0.0025 25.3 3.2 25 305-329 16-40 (117)
44 PF04639 Baculo_E56: Baculovir 20.9 42 0.00091 32.8 0.7 32 301-332 272-303 (305)
45 COG5488 Integral membrane prot 20.3 1.2E+02 0.0026 27.1 3.3 34 293-328 19-52 (164)
No 1
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-112 Score=814.53 Aligned_cols=327 Identities=55% Similarity=0.980 Sum_probs=299.9
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccCCcccccchhHHHHHHHHHHHHHHHHHHhhhhhcCceEEEEEeCCCCCcCCCCC
Q 018735 17 AGSPDPPAPRRSSKRPKYSKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVANR 96 (351)
Q Consensus 17 ~~~~~~~~~~~~s~~p~~~~f~QQ~L~aw~P~lTp~~vi~~f~~igiifi~iGi~l~~~s~~v~E~~i~Yd~~c~~~~~~ 96 (351)
.+.+|-++..+++|||++++|+|||||||||+|||++|+++||++|++|+|||++++++|++|.|++++|+ +|.+.+..
T Consensus 8 ~~~~~~~~~~~~s~rP~~t~f~QQrLpA~qPilt~~~vlp~f~i~g~vFipiGv~l~~as~~v~Ei~i~YT-dc~~~~~~ 86 (351)
T KOG2952|consen 8 DVIPDLKGNRKKSRRPKNTAFKQQRLPAWQPILTPRTVLPLFFIIGVVFLPIGVGLLFASSKVIEITIRYT-DCIPTGFR 86 (351)
T ss_pred cccccccchhhhccCCccccchhccccccccccCcchHHHHHHHHHHHHHhhhhheeEeecceEEEEEecc-cCcccccc
Confidence 34566777778899999999999999999999999999999999999999999999999999999999995 79887666
Q ss_pred CCceeeeecCC--CceeEEEec---cCCCceEEEEEecchhhhhhhhhhCCChhhhcCcCCC-CCCCCCCCcccCCCCCe
Q 018735 97 TDKVAFIQSNA--SKTCTRQIT---HMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKT-SETSQCEPEDTTPDGKP 170 (351)
Q Consensus 97 ~~~~~~~~~~~--~~~C~i~f~---~m~~pVyvYY~L~NFyQNHRrYv~S~s~~QL~G~~~~-~~~~~C~P~~~~~~g~~ 170 (351)
+.+.++++... .+.|+++|+ +|++|||+||+|+|||||||||++|||++||+|+... ...++|.|++++.+|++
T Consensus 87 ~~~~~~~~~~~~~~~~C~~~f~vp~~~k~pVy~YY~L~nfyQNhRRYvkSr~d~QL~G~~~~~~~~~~C~Pl~~~~~~kp 166 (351)
T KOG2952|consen 87 TNPSEYIQGHFDQTKSCTITFTVPKDMKGPVYLYYELTNFYQNHRRYVKSRDDKQLRGEPSKELNVKSCAPLEYNEGGKP 166 (351)
T ss_pred ccchhhhhcccCcccceEEEEEccccCCCCEEEEEehhHHHHHHHHHHhcccHHHhcCCCccccCccCCCcceecCCCce
Confidence 66666665433 367999998 9999999999999999999999999999999999753 34566999999777799
Q ss_pred eecchhhhhccccceeecccCCc---cceeeeccccCCcccccccCCCCC-------CCCCCCCcccCCcccCCCCCCCC
Q 018735 171 IVPCGLIAWSLFNDTYTFSRNKR---QLTVNKNGIAWKSDRDHKFGKEVF-------PSNFQNGTLIGGAHLNESIPLSK 240 (351)
Q Consensus 171 i~PCGliA~S~FNDtF~l~~~~~---~~~~~~~gIaW~sD~~~kF~~~~~-------p~~w~~~~~~~~~~~~~~~~~~~ 240 (351)
|+||||||||||||||++...++ .++++++||||++|+ +||+++.+ |+||++..+.|+ ..|++.++.+
T Consensus 167 i~PCGlIAnSlFNDTf~~~~~~~~~~~~~l~~kgIaW~sDk-~kf~~p~~n~~~~~pPpnW~k~~~~gg-~~d~n~pl~~ 244 (351)
T KOG2952|consen 167 IYPCGLIANSLFNDTFELSLTNDGDSDYPLTTKGIAWESDK-HKFRKPIYNASGIVPPPNWQKGYPEGG-YTDDNIPLSE 244 (351)
T ss_pred eeecchhcchhcccccchhcccCCCccceeccCCccchhhh-hhhcCCCCccccccCCccccccCCcCC-cCCCCCCchh
Confidence 99999999999999999976543 789999999999999 99998655 999999999887 6777778999
Q ss_pred chhHHHHHhcCCCchhHHhhhccccc-CCCCCEEEEEEeeeecCcccCceEEEEEEeccccCcCCcchhHHHHHHHHHHH
Q 018735 241 QEDLIVWMRTAALPTFRKLYGKIEVD-LEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCF 319 (351)
Q Consensus 241 ne~FivWMr~Aalp~FrKLYg~i~~~-L~~G~~y~v~I~nnypv~~F~G~K~ivlst~Sw~GgkN~fLgi~yivvG~i~~ 319 (351)
||+||||||+||||+||||||||+++ |++| +|++.|++||||+.|+|+|++||+|+||+||||+||||+|||||++|+
T Consensus 245 nedfivWMRtAAlPtFrKLy~~i~~~gL~~G-~y~l~i~~Nypv~sf~G~K~~vlst~SwlGgkN~FLgI~YLvVG~ic~ 323 (351)
T KOG2952|consen 245 NEDFIVWMRTAALPTFRKLYRIIESNGLPKG-TYQLNITNNYPVRSFNGKKKFVLSTTSWLGGKNPFLGIAYLVVGSICI 323 (351)
T ss_pred hHHHHHHHHhcccchHHHHHhhhccCCCCCc-eEEEEEecccceeecCCceEEEEeeccccccCCccceehHHHHHHHHH
Confidence 99999999999999999999999986 9999 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccccCCC
Q 018735 320 FLALSFTIVYLVKPRRLGDPSYLSWNRN 347 (351)
Q Consensus 320 ~~~i~fli~~~~~pr~lgD~~~L~w~~~ 347 (351)
++|++|+++|+++||++||+++|+|++.
T Consensus 324 ~l~~~f~~~~l~~~r~~~d~~~l~~~~~ 351 (351)
T KOG2952|consen 324 LLGLIFLVIYLFKPRRLGDPSYLSWNRS 351 (351)
T ss_pred HHHHHHHHHHhhcccccCCccccccccC
Confidence 9999999999999999999999999974
No 2
>COG5035 CDC50 Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-99 Score=708.96 Aligned_cols=319 Identities=41% Similarity=0.714 Sum_probs=281.4
Q ss_pred CCCCCCCCCCCCcccccccCCcccccchhHHHHHHHHHHHHHHHHHHhhhhhcCceEEEEEeCCCCCcCCCCC------C
Q 018735 24 APRRSSKRPKYSKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVANR------T 97 (351)
Q Consensus 24 ~~~~~s~~p~~~~f~QQ~L~aw~P~lTp~~vi~~f~~igiifi~iGi~l~~~s~~v~E~~i~Yd~~c~~~~~~------~ 97 (351)
+...++|||.+++|+|||||||||++||+.|+++||++|++|.|||+.+++++.+|+|++|+|+ +|...+.. .
T Consensus 15 ~~~~k~r~p~nt~F~QQrL~awqpilsp~~vLpL~flig~vf~plG~gl~~~~s~VqeltI~Yt-dc~t~as~~f~~iPs 93 (372)
T COG5035 15 PSLLKSRRPPNTAFRQQRLKAWQPILSPRTVLPLLFLIGIVFAPLGGGLLVASSSVQELTIDYT-DCMTLASDEFSDIPS 93 (372)
T ss_pred cccccccCCchhhHHHhhccccccccCchHHHHHHHHHHHHHhhccceEEEEeeeeeeeeeccc-ccccccchhhhhCch
Confidence 3455789999999999999999999999999999999999999999999999999999999998 58765521 1
Q ss_pred Cceeee--------------ecC--CCceeEEEec---cCCCceEEEEEecchhhhhhhhhhCCChhhhcCcCCC--CCC
Q 018735 98 DKVAFI--------------QSN--ASKTCTRQIT---HMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKT--SET 156 (351)
Q Consensus 98 ~~~~~~--------------~~~--~~~~C~i~f~---~m~~pVyvYY~L~NFyQNHRrYv~S~s~~QL~G~~~~--~~~ 156 (351)
+.+.+. .++ +...|++.|+ +||.|||+||+|+|||||||||++|.|.+||+|+... ...
T Consensus 94 ~~~~~~f~~~~~~~pqW~~~~~~~~d~~~C~irf~vp~~~k~~vfiyyrl~nFyQNhrRY~~S~d~dQl~Ge~~~~~~l~ 173 (372)
T COG5035 94 EYIQFHFKKKVNVLPQWRFSTDEEDDFQKCQIRFTVPSDMKKPVFIYYRLTNFYQNHRRYVKSFDEDQLRGEALKSDDLK 173 (372)
T ss_pred hheeeeeecccccccceeecccccCCcceeEEEEEchhhcccceeeeehhHHHHHhhHHHHhccCHHHhcCccccccccc
Confidence 112211 111 1357999998 9999999999999999999999999999999999654 223
Q ss_pred CCCCCcccCCCCCeeecchhhhhccccceeecccC----CccceeeeccccCCcccccccCCC-------CCCCCCCCCc
Q 018735 157 SQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRN----KRQLTVNKNGIAWKSDRDHKFGKE-------VFPSNFQNGT 225 (351)
Q Consensus 157 ~~C~P~~~~~~g~~i~PCGliA~S~FNDtF~l~~~----~~~~~~~~~gIaW~sD~~~kF~~~-------~~p~~w~~~~ 225 (351)
+.|.|+++ .++|+||||||||||||||||+.... ++.+.++.+||||++|+ ++|+++ ++||||.+.+
T Consensus 174 ~nC~PL~~-nedK~~YPcGLIaNSmfNDtf~~~l~~i~Dts~Y~lttkgIaW~sDr-~rykktkYn~sdIvpPPnW~k~y 251 (372)
T COG5035 174 SNCKPLSY-NEDKIIYPCGLIANSMFNDTFSSLLTGIEDTSNYNLTTKGIAWESDR-HRYKKTKYNASDIVPPPNWAKMY 251 (372)
T ss_pred ccCCcccc-cCCCeeecccccccccccccchhhccccccccccccccCCccchhhc-ccccCCCCChhhcCCCCchHhhC
Confidence 68999998 45699999999999999999987542 45689999999999999 688764 6799999998
Q ss_pred ccCCcccCCCCCCCCchhHHHHHhcCCCchhHHhhhcccc-cCCCCCEEEEEEeeeecCcccCceEEEEEEeccccCcCC
Q 018735 226 LIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEV-DLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKN 304 (351)
Q Consensus 226 ~~~~~~~~~~~~~~~ne~FivWMr~Aalp~FrKLYg~i~~-~L~~G~~y~v~I~nnypv~~F~G~K~ivlst~Sw~GgkN 304 (351)
+.|+.+ ++-++++++|+|+||||+||||+|+||++|.+. .|++| +|+++|+.||||..|+|+|+|||+|.|.+||||
T Consensus 252 pdGYtd-~NiPDls~wE~Fq~WMrtAafP~F~KLa~~N~~d~l~~G-~Y~lnI~l~fPv~~f~GtKsi~Ltt~SviGgkN 329 (372)
T COG5035 252 PDGYTD-DNIPDLSTWEEFQNWMRTAAFPKFSKLAMRNVNDVLPPG-TYQLNITLNFPVLEFNGTKSIVLTTNSVIGGKN 329 (372)
T ss_pred CCCCCc-cCCCcchhHHHHHHHhhcccCchHHHHhcccccccCCCc-eEEEEEEeecceeecCCceEEEEEecccccCCC
Confidence 887653 334668899999999999999999999999975 69999 699999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCC
Q 018735 305 DFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRN 347 (351)
Q Consensus 305 ~fLgi~yivvG~i~~~~~i~fli~~~~~pr~lgD~~~L~w~~~ 347 (351)
+||||+|||||++|.++|++|++.++++||+|||++||+|+++
T Consensus 330 ~fLGI~ylivg~ical~~~if~~~~~f~pR~~~Dh~yLnw~~~ 372 (372)
T COG5035 330 YFLGIVYLIVGGICALLGLIFLIKWLFKPRKMADHSYLNWNME 372 (372)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhCCcccCCcccccccCC
Confidence 9999999999999999999999999999999999999999974
No 3
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=100.00 E-value=4.1e-83 Score=611.74 Aligned_cols=259 Identities=53% Similarity=0.870 Sum_probs=222.3
Q ss_pred hhhhcCceEEEEEeCCCCCcCCCCCCCceeeeecCCCceeEEEec---cCCCceEEEEEecchhhhhhhhhhCCChhhhc
Q 018735 72 SLLASRDVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQIT---HMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLK 148 (351)
Q Consensus 72 l~~~s~~v~E~~i~Yd~~c~~~~~~~~~~~~~~~~~~~~C~i~f~---~m~~pVyvYY~L~NFyQNHRrYv~S~s~~QL~ 148 (351)
|++++++|+|++++||+.|..... .........++|.++|+ +|++||||||||+|||||||||++|||++||+
T Consensus 1 ll~~s~~v~E~~~~Yd~~~~~~~~----~~~~~~~~~~~c~v~f~i~~~~~~pVyvYY~L~nFYQNhr~y~~S~~~~QL~ 76 (278)
T PF03381_consen 1 LLVASNSVVEIEIRYDDCCDCQNC----YINEFSPIPCTCSVTFNIPEDMKGPVYVYYELTNFYQNHRRYVKSRSDSQLK 76 (278)
T ss_pred CEEEeCCEEEEEEECCCCCCCCCc----cccccCCCCceEEEEEEcCccCCCCEEEEEEEehhhHHhHHHHhcCCHHHhC
Confidence 578899999999999988765221 00000111358999987 89999999999999999999999999999999
Q ss_pred CcCCC-CCCCCCCCcccC--CCCCeeecchhhhhccccceeeccc----CCccceeeeccccCCcccccccCCC------
Q 018735 149 KRSKT-SETSQCEPEDTT--PDGKPIVPCGLIAWSLFNDTYTFSR----NKRQLTVNKNGIAWKSDRDHKFGKE------ 215 (351)
Q Consensus 149 G~~~~-~~~~~C~P~~~~--~~g~~i~PCGliA~S~FNDtF~l~~----~~~~~~~~~~gIaW~sD~~~kF~~~------ 215 (351)
|+... ++.++|+|+++. .++++++||||||||||||||+|.. .++.++|+++||+|++|++.+|+++
T Consensus 77 G~~~~~~~~~~C~p~~~~~~~~~~~~~PCGliA~S~FNDtF~l~~~~~~~~~~~~~~~~gIaw~~d~~~~fk~~~~~~~~ 156 (278)
T PF03381_consen 77 GKIVSKSDLSDCDPLRTNNENNGKIIYPCGLIANSMFNDTFSLYRRNSGNNENIPLDETGIAWSSDRESKFKNPHYNNSN 156 (278)
T ss_pred CCccccCCCCCCCCceeccCCCCCEeecccHhHhhhccceEEeeecccCCCceeeeecccccCchHHHHhcCCCCCcccc
Confidence 99743 446799999984 4788999999999999999999973 3467899999999999999999873
Q ss_pred -CCCCCCCCCcccCCcccCCCCC-CCCchhHHHHHhcCCCchhHHhhhcc-cccCCCCCEEEEEEeeeecCcccCceEEE
Q 018735 216 -VFPSNFQNGTLIGGAHLNESIP-LSKQEDLIVWMRTAALPTFRKLYGKI-EVDLEENDIIDVILENNYNTYSFSGKKKL 292 (351)
Q Consensus 216 -~~p~~w~~~~~~~~~~~~~~~~-~~~ne~FivWMr~Aalp~FrKLYg~i-~~~L~~G~~y~v~I~nnypv~~F~G~K~i 292 (351)
++|++|... .+.+...+ ..+|||||||||+||||+|||||||| +++|++|+ |+|+|+|||||+.|+|+|+|
T Consensus 157 ~~~~~~W~~~-----~~~~~~~p~~~~ne~fivWMr~a~lp~FrKLYg~i~~~~L~~G~-y~i~I~nnypv~~f~G~K~i 230 (278)
T PF03381_consen 157 TVPPPNWRPG-----YENDTPWPDNSENEHFIVWMRPAALPTFRKLYGRIDNDDLPAGN-YTIDITNNYPVSSFGGKKSI 230 (278)
T ss_pred ccCCCceeee-----ccCCCCCCcccccHHHHHHhccccCCCeeEeEeeeccCCCCCce-EEEEEEEeecccccCcEEEE
Confidence 347777431 12233233 34699999999999999999999999 89999995 99999999999999999999
Q ss_pred EEEeccccCcCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 018735 293 VLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPS 340 (351)
Q Consensus 293 vlst~Sw~GgkN~fLgi~yivvG~i~~~~~i~fli~~~~~pr~lgD~~ 340 (351)
||+|+||+||||+||||+|||||+||+++|++|++.|+++||+|||++
T Consensus 231 vlst~s~~Ggkn~~Lgi~ylvvg~i~~v~~i~~~~~~~~~~r~~gD~~ 278 (278)
T PF03381_consen 231 VLSTTSWFGGKNYFLGIAYLVVGGICLVLAIIFLIIHYFKPRKLGDTS 278 (278)
T ss_pred EEEeccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999985
No 4
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=88.84 E-value=0.38 Score=41.16 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018735 308 GIAYLTVGGLCFFLALSFTIVYLVKPR 334 (351)
Q Consensus 308 gi~yivvG~i~~~~~i~fli~~~~~pr 334 (351)
.|+.||+|+++-++++++|+.++++.|
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888877777543
No 5
>COG1470 Predicted membrane protein [Function unknown]
Probab=64.15 E-value=27 Score=36.38 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=29.5
Q ss_pred cccCCCCCEEEEEEeeeecCcccCceEEEEEEeccccC
Q 018735 264 EVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLG 301 (351)
Q Consensus 264 ~~~L~~G~~y~v~I~nnypv~~F~G~K~ivlst~Sw~G 301 (351)
..+-.+|+ |.+.|+-.=+...+..+=.+++-+.|--|
T Consensus 453 P~~a~aGd-Y~i~i~~ksDq~s~e~tlrV~V~~sS~st 489 (513)
T COG1470 453 PEDAGAGD-YRITITAKSDQASSEDTLRVVVGQSSTST 489 (513)
T ss_pred CCCCCCCc-EEEEEEEeeccccccceEEEEEeccccch
Confidence 34667886 99999888888888888888888877655
No 6
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=55.80 E-value=9.2 Score=33.04 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=33.2
Q ss_pred HhcCCCchhHHhhhcccccCCCCCEEEEEEeeeecCcccCceEEEEEEe
Q 018735 248 MRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLST 296 (351)
Q Consensus 248 Mr~Aalp~FrKLYg~i~~~L~~G~~y~v~I~nnypv~~F~G~K~ivlst 296 (351)
|+.|+-++|.=.-..-+..|++| +|++.++-...-..|.-+|.|.|+.
T Consensus 84 ~~mAPNS~f~~~i~~~~~~lk~G-~Y~l~~~~~~~~~~W~f~k~F~It~ 131 (140)
T PF11797_consen 84 MQMAPNSNFNFPIPLGGKKLKPG-KYTLKITAKSGKKTWTFTKDFTITA 131 (140)
T ss_pred CEECCCCeEEeEecCCCcCccCC-EEEEEEEEEcCCcEEEEEEEEEECH
Confidence 34555555542111113579999 5999999888888888889888864
No 7
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=52.18 E-value=22 Score=30.43 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=20.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018735 305 DFLGIAYLTVGGLCFFLALSFTIVYLVKPR 334 (351)
Q Consensus 305 ~fLgi~yivvG~i~~~~~i~fli~~~~~pr 334 (351)
-..||++-||+||.+++.+++++++..+.|
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 468899988888777777766666655544
No 8
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=50.73 E-value=17 Score=30.02 Aligned_cols=38 Identities=21% Similarity=0.500 Sum_probs=20.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCCC
Q 018735 306 FLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNP 348 (351)
Q Consensus 306 fLgi~yivvG~i~~~~~i~fli~~~~~pr~lgD~~~L~w~~~~ 348 (351)
|+-.+.++ +|+.+++|+...++..+. |-..||||.++-
T Consensus 3 f~~~vl~l-~g~llligftivvl~vyf----grk~ylswakpy 40 (126)
T PF13120_consen 3 FIKMVLLL-IGTLLLIGFTIVVLLVYF----GRKFYLSWAKPY 40 (126)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhhhhee----cceeeeeecChh
Confidence 34444454 444455555444443333 444699998863
No 9
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=48.92 E-value=44 Score=28.24 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 018735 54 VILTFLVVGIAFVPIGITSLLA 75 (351)
Q Consensus 54 vi~~f~~igiifi~iGi~l~~~ 75 (351)
...+++++|++++.+|++++..
T Consensus 46 la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 46 LAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3457788899999999877765
No 10
>PF12669 P12: Virus attachment protein p12 family
Probab=44.86 E-value=16 Score=27.05 Aligned_cols=26 Identities=15% Similarity=0.292 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC
Q 018735 312 LTVGGLCFFLALSFTIVYLVKPRRLG 337 (351)
Q Consensus 312 ivvG~i~~~~~i~fli~~~~~pr~lg 337 (351)
||||+|.++++++.++.++++.++-|
T Consensus 2 iII~~Ii~~~~~~v~~r~~~k~~K~G 27 (58)
T PF12669_consen 2 IIIGIIILAAVAYVAIRKFIKDKKKG 27 (58)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34566655554433457777776666
No 11
>PF10204 DuoxA: Dual oxidase maturation factor; InterPro: IPR018469 DuoxA (Dual oxidase maturation factor) is the essential protein necessary for the final release of DUOX2 (an NADPH:O2 oxidoreductase flavoprotein) from the endoplasmic reticulum. Dual oxidases (DUOX1 and DUOX2) constitute the catalytic core of the hydrogen peroxide generator, which generates H2O2 at the apical membrane of thyroid follicular cells, essential for iodination of thyroglobulin by thyroid peroxidases. DuoxA carries five membrane-integral regions including a reverse signal-anchor with external N terminus (type III) and two N-glycosylation sites []. It is conserved from nematodes to humans.; GO: 0015031 protein transport, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=44.62 E-value=18 Score=35.21 Aligned_cols=26 Identities=31% Similarity=0.705 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC
Q 018735 312 LTVGGLCFFLALSFTIVYLVKPRRLG 337 (351)
Q Consensus 312 ivvG~i~~~~~i~fli~~~~~pr~lg 337 (351)
++.|.+|+++|+++++.++.+|.++.
T Consensus 246 LatGiLc~l~G~~i~~ld~~~p~~l~ 271 (281)
T PF10204_consen 246 LATGILCLLLGLIIVFLDYIRPHKLS 271 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 67899999999999999999997654
No 12
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=39.10 E-value=34 Score=31.84 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 018735 309 IAYLTVGGLCFFLALSFTIVYLVK 332 (351)
Q Consensus 309 i~yivvG~i~~~~~i~fli~~~~~ 332 (351)
|+.++.|++|++++++..+.++.+
T Consensus 103 I~lv~~g~~lLla~~~~~~Y~~~~ 126 (202)
T PF06365_consen 103 IALVTSGSFLLLAILLGAGYCCHQ 126 (202)
T ss_pred EehHHhhHHHHHHHHHHHHHHhhh
Confidence 456777888888877776544443
No 13
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=38.46 E-value=21 Score=30.37 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q 018735 52 KWVILTFLVVGIAFVPIGITSLL 74 (351)
Q Consensus 52 ~~vi~~f~~igiifi~iGi~l~~ 74 (351)
+|++.++||+.|+++.++.++.-
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666655554443
No 14
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=37.81 E-value=49 Score=27.71 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=16.5
Q ss_pred hhHHHHHHHHH---HHHHHHHHHhhhh
Q 018735 51 PKWVILTFLVV---GIAFVPIGITSLL 74 (351)
Q Consensus 51 p~~vi~~f~~i---giifi~iGi~l~~ 74 (351)
..++..+++++ |++|+.+|+++++
T Consensus 121 ~~~~~~~~~~~~~lG~~~~~~gl~~~v 147 (148)
T PF12158_consen 121 GLWLMFIFGFGFILGLIFFLVGLFMLV 147 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555444 8999999998765
No 15
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=34.94 E-value=51 Score=28.93 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Q 018735 52 KWVILTFLVVGIAFVPIGITSLLA 75 (351)
Q Consensus 52 ~~vi~~f~~igiifi~iGi~l~~~ 75 (351)
.+...+++++|++.+.+|+++.+.
T Consensus 36 ~s~Sg~~l~lG~lvllvGiaMAv~ 59 (141)
T PF10177_consen 36 CSPSGLFLLLGILVLLVGIAMAVL 59 (141)
T ss_pred ecHHHHHHHHHHHHHHHhhHhhee
Confidence 455678899999999999987643
No 16
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=34.46 E-value=53 Score=28.23 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018735 309 IAYLTVGGLCFFLALSFTIVYLVKPR 334 (351)
Q Consensus 309 i~yivvG~i~~~~~i~fli~~~~~pr 334 (351)
++-++..++|+++|+++|...+..-|
T Consensus 37 ysiL~Ls~vvlvi~~~LLgrsi~ANR 62 (125)
T PF15048_consen 37 YSILALSFVVLVISFFLLGRSIQANR 62 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhcc
Confidence 45588899999999999988776433
No 17
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=33.22 E-value=11 Score=31.93 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=1.8
Q ss_pred cccCceEEEEEEeccccCcCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 018735 284 YSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLG 337 (351)
Q Consensus 284 ~~F~G~K~ivlst~Sw~GgkN~fLgi~yivvG~i~~~~~i~fli~~~~~pr~lg 337 (351)
..|.|+..-.|+.---.| +|.+.+|+|+++++-.|+..|+-|
T Consensus 11 ~~~kg~~~syitAEEAaG------------IGiL~VILgiLLliGCWYckRRSG 52 (118)
T PF14991_consen 11 YPFKGKGHSYITAEEAAG------------IGILIVILGILLLIGCWYCKRRSG 52 (118)
T ss_dssp -----------------S------------SS----------------------
T ss_pred CccccCCcceeeHHHhcc------------ceeHHHHHHHHHHHhheeeeecch
Confidence 356777777777766666 567778888888888777766544
No 18
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=32.29 E-value=38 Score=28.61 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=17.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHH
Q 018735 303 KNDFLGIAYLTVGGLCFFLALSFTIVY 329 (351)
Q Consensus 303 kN~fLgi~yivvG~i~~~~~i~fli~~ 329 (351)
|-..|+++.+++|.+++++|+++++.+
T Consensus 42 K~I~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 42 KSIALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445666777777777777776665544
No 19
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=32.00 E-value=48 Score=24.00 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 018735 310 AYLTVGGLCFFLALSFTIVYLVKP 333 (351)
Q Consensus 310 ~yivvG~i~~~~~i~fli~~~~~p 333 (351)
++++|+.++++.-+.+++.+..|.
T Consensus 3 ~~~iV~i~iv~~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 3 AFLIVSIFIVMGLLGLSICTTLKA 26 (50)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhc
Confidence 567788888877777788777764
No 20
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=31.88 E-value=76 Score=23.32 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCceE
Q 018735 55 ILTFLVVGIAFVPIGITSLLASRDVV 80 (351)
Q Consensus 55 i~~f~~igiifi~iGi~l~~~s~~v~ 80 (351)
+.=.++--++++.+|+++++.+++-.
T Consensus 26 iik~vismimylilGi~L~yis~~~~ 51 (54)
T PF04835_consen 26 IIKSVISMIMYLILGIALIYISSNDD 51 (54)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCcc
Confidence 33334445677889999988777643
No 21
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=31.26 E-value=35 Score=33.21 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018735 310 AYLTVGGLCFFLALSFTIVYLVKPRR 335 (351)
Q Consensus 310 ~yivvG~i~~~~~i~fli~~~~~pr~ 335 (351)
+=|+||++..++.|+.|+.|++..||
T Consensus 273 vPIaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 273 VPIAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEecc
Confidence 44667877777777777778776555
No 22
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=31.04 E-value=49 Score=31.79 Aligned_cols=23 Identities=22% Similarity=0.496 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Q 018735 54 VILTFLVVGIAFVPIGITSLLAS 76 (351)
Q Consensus 54 vi~~f~~igiifi~iGi~l~~~s 76 (351)
-..+|+++|++|+++|+.+.+..
T Consensus 197 R~i~f~llgllfliiaigltvGT 219 (256)
T PF09788_consen 197 RAIIFFLLGLLFLIIAIGLTVGT 219 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 35799999999999999887654
No 23
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=30.42 E-value=80 Score=29.65 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 018735 307 LGIAYLTVGGLCFFLALSFT 326 (351)
Q Consensus 307 Lgi~yivvG~i~~~~~i~fl 326 (351)
+=|++||+|++.||..++||
T Consensus 130 mLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 130 MLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45668888888888877776
No 24
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=29.05 E-value=82 Score=25.57 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=17.8
Q ss_pred cCcCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 018735 300 LGGKNDFLGIAYLTVGGLCFFLALSFTIVY 329 (351)
Q Consensus 300 ~GgkN~fLgi~yivvG~i~~~~~i~fli~~ 329 (351)
+|-.-.-||+.|+++.++.+++.+..++..
T Consensus 26 ~~n~~~~Lgm~~lvI~~iFil~VilwfvCC 55 (94)
T PF05393_consen 26 FVNNWPNLGMWFLVICGIFILLVILWFVCC 55 (94)
T ss_pred ecCCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 343334578888887777555554444433
No 25
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=28.38 E-value=82 Score=26.75 Aligned_cols=25 Identities=28% Similarity=0.662 Sum_probs=15.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhh
Q 018735 49 LTPKWVILTFLVVGIAFVPIGITSLL 74 (351)
Q Consensus 49 lTp~~vi~~f~~igiifi~iGi~l~~ 74 (351)
-+|.++ .+.++.-|+|.|||++++.
T Consensus 7 ~~~a~I-a~mVlGFi~fWPlGla~La 31 (115)
T PF11014_consen 7 WKPAWI-AAMVLGFIVFWPLGLALLA 31 (115)
T ss_pred CchHHH-HHHHHHHHHHHHHHHHHHH
Confidence 344453 3444445678899988873
No 26
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=27.01 E-value=24 Score=31.57 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=2.7
Q ss_pred hHHHHHh
Q 018735 243 DLIVWMR 249 (351)
Q Consensus 243 ~FivWMr 249 (351)
+.-+|..
T Consensus 56 ~~~~~~~ 62 (179)
T PF13908_consen 56 DTPDWTP 62 (179)
T ss_pred ccccccc
Confidence 3334443
No 27
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=26.37 E-value=1e+02 Score=26.31 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018735 308 GIAYLTVGGLCFFLALSFTIVYLVKPRR 335 (351)
Q Consensus 308 gi~yivvG~i~~~~~i~fli~~~~~pr~ 335 (351)
++..+++|.+.+++|++.++.++..+++
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~l~~~~~~~ 112 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYIILGFFCPIK 112 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6677888999999999999999988765
No 28
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=26.30 E-value=50 Score=31.74 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=31.2
Q ss_pred cccCc-CCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccc
Q 018735 298 SWLGG-KNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSW 344 (351)
Q Consensus 298 Sw~Gg-kN~fLgi~yivvG~i~~~~~i~fli~~~~~pr~lgD~~~L~w 344 (351)
|..|. -.---+|+|+++|.+.+++|+++.+..+..-+..|- -|.+|
T Consensus 187 SSVG~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~g-iY~~w 233 (256)
T PF09788_consen 187 SSVGPRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGG-IYVSW 233 (256)
T ss_pred ccccchHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCc-EeHHH
Confidence 44553 223457889999999999999998877665555543 24444
No 29
>PRK02935 hypothetical protein; Provisional
Probab=26.10 E-value=85 Score=26.30 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhh
Q 018735 50 TPKWVILTFLVVGIAFVPIGITSLL 74 (351)
Q Consensus 50 Tp~~vi~~f~~igiifi~iGi~l~~ 74 (351)
+..+++.+|+++|++++..+.++++
T Consensus 35 ~~~~~m~ifm~~G~l~~l~S~vvYF 59 (110)
T PRK02935 35 ESIIIMTIFMLLGFLAVIASTVVYF 59 (110)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999998888774
No 30
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=25.24 E-value=46 Score=24.11 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 018735 307 LGIAYLTVGGLCFFLALSFTIVYLV 331 (351)
Q Consensus 307 Lgi~yivvG~i~~~~~i~fli~~~~ 331 (351)
|-+.=+|+++|.+++|+++++....
T Consensus 14 LrigGLi~A~vlfi~Gi~iils~kc 38 (50)
T PF02038_consen 14 LRIGGLIFAGVLFILGILIILSGKC 38 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred hhccchHHHHHHHHHHHHHHHcCcc
Confidence 4445577888889999887766433
No 31
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=23.29 E-value=79 Score=24.98 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcCce
Q 018735 57 TFLVVGIAFVPIGITSLLASRDV 79 (351)
Q Consensus 57 ~f~~igiifi~iGi~l~~~s~~v 79 (351)
++|++|++++++|.++++.....
T Consensus 4 ~~Fl~~l~lliig~~~~v~~~Gf 26 (92)
T PF13038_consen 4 ILFLVGLILLIIGGFLFVFQSGF 26 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Confidence 45688999999999888887766
No 32
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=23.25 E-value=83 Score=30.98 Aligned_cols=30 Identities=3% Similarity=0.238 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 018735 307 LGIAYLTVGGLCFFLALSFTIVYLVKPRRL 336 (351)
Q Consensus 307 Lgi~yivvG~i~~~~~i~fli~~~~~pr~l 336 (351)
+++..+++=+|.+|+-|++||++.+|.|+|
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRRKKKm 287 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRRKKKM 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444555666666677776665665
No 33
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=22.82 E-value=72 Score=22.22 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 018735 310 AYLTVGGLCFFLALSFTIVYLVK 332 (351)
Q Consensus 310 ~yivvG~i~~~~~i~fli~~~~~ 332 (351)
+|++||.+++.+...|+..+|..
T Consensus 13 VF~lVglv~i~iva~~iYRKw~a 35 (43)
T PF08114_consen 13 VFCLVGLVGIGIVALFIYRKWQA 35 (43)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHH
Confidence 46777877776666666666543
No 34
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=22.07 E-value=82 Score=27.08 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcC
Q 018735 53 WVILTFLVVGIAFVPIGITSLLASR 77 (351)
Q Consensus 53 ~vi~~f~~igiifi~iGi~l~~~s~ 77 (351)
....++..+|.+++.+|++++++.|
T Consensus 31 ~~~~~l~~lGall~~~gii~fvA~n 55 (145)
T PF09925_consen 31 WLARILLYLGALLLGLGIILFVAAN 55 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999887764
No 35
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=22.01 E-value=2.4e+02 Score=22.78 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=7.8
Q ss_pred ccchhHHHHHHHH
Q 018735 48 ILTPKWVILTFLV 60 (351)
Q Consensus 48 ~lTp~~vi~~f~~ 60 (351)
-.+|.+..++++.
T Consensus 27 ~~sp~W~~p~m~~ 39 (87)
T PF06781_consen 27 KPSPRWYAPLMLG 39 (87)
T ss_pred CCCCccHHHHHHH
Confidence 4566666666553
No 36
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=21.86 E-value=1.2e+02 Score=23.49 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHH-HhcCCCCCCCcccc-cCCCC
Q 018735 315 GGLCFFLALSFTIVY-LVKPRRLGDPSYLS-WNRNP 348 (351)
Q Consensus 315 G~i~~~~~i~fli~~-~~~pr~lgD~~~L~-w~~~~ 348 (351)
|.+.++++.++++.. +.++|+-|+.|.-| +|++-
T Consensus 19 G~vf~i~s~f~~I~~Nl~~~r~~ge~SAYSVFN~~~ 54 (71)
T PF10260_consen 19 GPVFFILSGFYLIFTNLGTPRKPGELSAYSVFNKGC 54 (71)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCccchhhhCCCc
Confidence 555555555444433 33469999988766 66543
No 37
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=21.77 E-value=2.9e+02 Score=22.71 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 018735 55 ILTFLVVGIAFVPIGITSLLA 75 (351)
Q Consensus 55 i~~f~~igiifi~iGi~l~~~ 75 (351)
.+.|+.+++.++.+++++.+.
T Consensus 61 ~~~f~~~~~~~v~~~~~~~y~ 81 (105)
T PF10183_consen 61 LPFFFGFSGSLVFGGVFLAYK 81 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 566777777777777766654
No 38
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=21.38 E-value=1.2e+02 Score=25.75 Aligned_cols=24 Identities=8% Similarity=0.355 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhh
Q 018735 51 PKWVILTFLVVGIAFVPIGITSLL 74 (351)
Q Consensus 51 p~~vi~~f~~igiifi~iGi~l~~ 74 (351)
-.+++.+|+++|++++..+.++++
T Consensus 35 ~~~im~ifmllG~L~~l~S~~VYf 58 (114)
T PF11023_consen 35 SPIIMVIFMLLGLLAILASTAVYF 58 (114)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999888887775
No 39
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=21.37 E-value=1.4e+02 Score=24.57 Aligned_cols=36 Identities=22% Similarity=0.081 Sum_probs=27.0
Q ss_pred EeccccCcCCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 018735 295 STTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVK 332 (351)
Q Consensus 295 st~Sw~GgkN~fLgi~yivvG~i~~~~~i~fli~~~~~ 332 (351)
+-+-++++++- +++.|++|+.|.+-+.+.++....+
T Consensus 34 ~LP~~l~~~~a--ai~MIf~Gi~lMlPAav~ivWR~a~ 69 (96)
T PF07214_consen 34 SLPAPLSTPTA--AIAMIFVGIGLMLPAAVNIVWRVAK 69 (96)
T ss_pred cCcccccCchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567886654 7788888999999998888776543
No 40
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.34 E-value=92 Score=23.29 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=17.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHH
Q 018735 302 GKNDFLGIAYLTVGGLCFFLALSF 325 (351)
Q Consensus 302 gkN~fLgi~yivvG~i~~~~~i~f 325 (351)
|+..-=.+.|++.|++|.+.|++.
T Consensus 35 G~~t~~t~~~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 35 GSPTDKTIWYLIGGAVAVIVGLFL 58 (59)
T ss_pred CCCCchhHHHHHhHHHHHHHHHhh
Confidence 555555677888888888888754
No 41
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=21.20 E-value=3e+02 Score=31.07 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=28.9
Q ss_pred cCCCCCEEEEEEeeeecC--cccCceEEEEEEecc-----ccCcCCcchhHHHHHHHHHHHHHHH
Q 018735 266 DLEENDIIDVILENNYNT--YSFSGKKKLVLSTTS-----WLGGKNDFLGIAYLTVGGLCFFLAL 323 (351)
Q Consensus 266 ~L~~G~~y~v~I~nnypv--~~F~G~K~ivlst~S-----w~GgkN~fLgi~yivvG~i~~~~~i 323 (351)
+|.+|.+|-|.|--+-+. -.|+++- -+.|.. -.|+...+.+.+ +++|++.+|+++
T Consensus 504 gL~p~t~YvfqVRarT~aG~G~~S~~~--~fqT~~~~~~~~~~~~l~~i~g~-~~~~v~~lll~~ 565 (996)
T KOG0196|consen 504 GLKPGTVYVFQVRARTAAGYGPYSGKH--EFQTLPSESSSQSGEQLPLIIGS-ILAGVVFLLLAA 565 (996)
T ss_pred ccCCCcEEEEEEEEecccCCCCCCCce--eeeecCcccccccccchhhHHHH-HHHHHHHHHHHH
Confidence 799998899999766333 2444433 334433 344444444333 333444444333
No 42
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=21.08 E-value=89 Score=32.20 Aligned_cols=55 Identities=24% Similarity=0.405 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCCCCC-CcccccccCCcccccchhHHH-HHHHHHHHHHHHHHHhhhhhcCceEE
Q 018735 20 PDPPAPRRSSKRPKY-SKFTQQELPACKPILTPKWVI-LTFLVVGIAFVPIGITSLLASRDVVE 81 (351)
Q Consensus 20 ~~~~~~~~~s~~p~~-~~f~QQ~L~aw~P~lTp~~vi-~~f~~igiifi~iGi~l~~~s~~v~E 81 (351)
|-|.+.++++|||.. ..|+|.+++. +.++ .+.+++.++++.+++..+..+...+|
T Consensus 5 ~K~kplk~~~kr~~ri~~~r~ke~~~-------riiiGa~Vl~iIii~~~~~~Y~~~~~~~~~e 61 (416)
T PF04415_consen 5 PKPKPLKKPSKRSSRIGSIREKERRK-------RIIIGAAVLIIIIIFIVYNIYYFLQNQPAQE 61 (416)
T ss_pred CCCCCCCCCCcccccccccchhhhhh-------hhhhhhhhHhHHHHHHHHHHHHHhhhhHHHH
Confidence 444445555666662 3556554432 1222 12455555666666666666666555
No 43
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=21.04 E-value=1.1e+02 Score=25.26 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Q 018735 305 DFLGIAYLTVGGLCFFLALSFTIVY 329 (351)
Q Consensus 305 ~fLgi~yivvG~i~~~~~i~fli~~ 329 (351)
.|+|..|+.+..+.++++++|-+-+
T Consensus 16 LF~~AIFiAItIlYILLalL~EvPk 40 (117)
T PF07234_consen 16 LFFGAIFIAITILYILLALLFEVPK 40 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4788889999999999998885433
No 44
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=20.94 E-value=42 Score=32.85 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=18.8
Q ss_pred CcCCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 018735 301 GGKNDFLGIAYLTVGGLCFFLALSFTIVYLVK 332 (351)
Q Consensus 301 GgkN~fLgi~yivvG~i~~~~~i~fli~~~~~ 332 (351)
-..+.++.+.++|.|++.+++-.+|+++.+.+
T Consensus 272 S~s~~l~piil~IG~vl~i~~Ig~~ifK~~~~ 303 (305)
T PF04639_consen 272 SVSDSLLPIILIIGGVLLIVFIGYFIFKRLMN 303 (305)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhheeeEeecc
Confidence 44577888888775555555544444444433
No 45
>COG5488 Integral membrane protein [Function unknown]
Probab=20.30 E-value=1.2e+02 Score=27.09 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=23.7
Q ss_pred EEEeccccCcCCcchhHHHHHHHHHHHHHHHHHHHH
Q 018735 293 VLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIV 328 (351)
Q Consensus 293 vlst~Sw~GgkN~fLgi~yivvG~i~~~~~i~fli~ 328 (351)
+|+-.-.+|-+. .++.++++++.+++.+++|+++
T Consensus 19 ll~p~rSlg~rg--f~~lm~~~~~~~~~v~~ff~~i 52 (164)
T COG5488 19 LLTPHRSLGPRG--FGVLMLALGILSLVVAIFFLVI 52 (164)
T ss_pred HhCcccccChhh--HHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555444 3678888999999999888764
Done!