Query 018735
Match_columns 351
No_of_seqs 124 out of 523
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 05:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 74.2 6.1 0.00021 26.9 4.9 32 304-335 7-38 (44)
2 2ks1_B Epidermal growth factor 68.7 4.1 0.00014 27.7 3.0 31 305-335 9-39 (44)
3 1afo_A Glycophorin A; integral 47.0 23 0.00077 23.4 3.6 25 308-332 11-35 (40)
4 2k9y_A Ephrin type-A receptor 42.8 22 0.00077 23.0 3.2 24 307-330 13-36 (41)
5 2jwa_A Receptor tyrosine-prote 42.0 32 0.0011 23.3 3.9 29 304-332 9-37 (44)
6 2k1k_A Ephrin type-A receptor 39.2 44 0.0015 21.7 4.1 24 309-332 13-36 (38)
7 2jo1_A Phospholemman; FXYD1, N 31.0 39 0.0013 25.2 3.1 25 307-331 16-40 (72)
8 2jp3_A FXYD domain-containing 28.1 26 0.00089 25.8 1.7 25 307-331 17-41 (67)
9 2knc_B Integrin beta-3; transm 24.3 83 0.0028 23.6 4.0 23 306-328 10-32 (79)
10 2zxe_G FXYD10, phospholemman-l 22.3 33 0.0011 25.7 1.3 25 307-331 19-43 (74)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=74.17 E-value=6.1 Score=26.87 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=22.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018735 304 NDFLGIAYLTVGGLCFFLALSFTIVYLVKPRR 335 (351)
Q Consensus 304 N~fLgi~yivvG~i~~~~~i~fli~~~~~pr~ 335 (351)
....+|+=-|+|++.+++.+++++..+.+.|+
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 34456888889988887777776666666554
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=68.66 E-value=4.1 Score=27.69 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=22.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018735 305 DFLGIAYLTVGGLCFFLALSFTIVYLVKPRR 335 (351)
Q Consensus 305 ~fLgi~yivvG~i~~~~~i~fli~~~~~pr~ 335 (351)
...+|+--|||++.+++.+++++..+.+.|+
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 3456888889988887777777666666554
No 3
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=47.04 E-value=23 Score=23.41 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 018735 308 GIAYLTVGGLCFFLALSFTIVYLVK 332 (351)
Q Consensus 308 gi~yivvG~i~~~~~i~fli~~~~~ 332 (351)
.++.+|.|..+-++|.++++.+..+
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999988765
No 4
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=42.82 E-value=22 Score=22.97 Aligned_cols=24 Identities=17% Similarity=0.211 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 018735 307 LGIAYLTVGGLCFFLALSFTIVYL 330 (351)
Q Consensus 307 Lgi~yivvG~i~~~~~i~fli~~~ 330 (351)
.+|+--+++++.+++++++++..+
T Consensus 13 ~~I~~~vv~Gv~ll~~iv~~~~~~ 36 (41)
T 2k9y_A 13 LAVIGGVAVGVVLLLVLAGVGFFI 36 (41)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSS
T ss_pred EEEEeehhHHHHHHHHHHHHheeE
Confidence 445666667777766455444433
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=41.96 E-value=32 Score=23.28 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=16.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 018735 304 NDFLGIAYLTVGGLCFFLALSFTIVYLVK 332 (351)
Q Consensus 304 N~fLgi~yivvG~i~~~~~i~fli~~~~~ 332 (351)
.+...|+=.++|.+++++..+.+++++.+
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhheeh
Confidence 34456778888866555554444444443
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=39.17 E-value=44 Score=21.70 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 018735 309 IAYLTVGGLCFFLALSFTIVYLVK 332 (351)
Q Consensus 309 i~yivvG~i~~~~~i~fli~~~~~ 332 (351)
|+=+|+|++..+..++.++..+.+
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeeehHHHHHHHHHHHHHHHHee
Confidence 455666666544444444433333
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=30.98 E-value=39 Score=25.15 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 018735 307 LGIAYLTVGGLCFFLALSFTIVYLV 331 (351)
Q Consensus 307 Lgi~yivvG~i~~~~~i~fli~~~~ 331 (351)
|-+.=||+++|.|++||++++....
T Consensus 16 LRiGGLifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 16 LQIGGLVIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHcCcc
Confidence 4455578899999999998887654
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=28.06 E-value=26 Score=25.81 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 018735 307 LGIAYLTVGGLCFFLALSFTIVYLV 331 (351)
Q Consensus 307 Lgi~yivvG~i~~~~~i~fli~~~~ 331 (351)
|-+.=||+++|.|++|+++++....
T Consensus 17 LRigGLifA~vLfi~GI~iilS~kc 41 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIALALSGKC 41 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred heecchhhHHHHHHHHHHHHHcCcc
Confidence 4455578889999999988887543
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.32 E-value=83 Score=23.64 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 018735 306 FLGIAYLTVGGLCFFLALSFTIV 328 (351)
Q Consensus 306 fLgi~yivvG~i~~~~~i~fli~ 328 (351)
.++|+.-|+|+|.++.-+++++.
T Consensus 10 ~~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 35565555566544444444433
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=22.33 E-value=33 Score=25.75 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 018735 307 LGIAYLTVGGLCFFLALSFTIVYLV 331 (351)
Q Consensus 307 Lgi~yivvG~i~~~~~i~fli~~~~ 331 (351)
|-+.=||+++|.|++||++++....
T Consensus 19 LRigGLifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 19 LRVVGLIVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred heeccchhHHHHHHHHHHHHHcCcc
Confidence 4555578889999999988876544
Done!