Query 018735
Match_columns 351
No_of_seqs 124 out of 523
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 05:15:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018735.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018735hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x4la1 g.39.1.3 (A:8-36) Four 38.0 2.6 0.00019 24.5 -0.4 20 281-300 6-25 (29)
2 d1x68a1 g.39.1.3 (A:8-36) Four 34.6 4.8 0.00035 23.3 0.4 18 282-299 7-24 (29)
3 d2axth1 f.23.33.1 (H:2-65) Pho 19.6 82 0.006 21.1 4.6 33 314-346 30-63 (64)
4 d2h80a1 a.60.1.3 (A:11-81) Del 17.6 18 0.0013 25.0 0.8 20 243-262 13-32 (71)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 16.9 86 0.0063 17.5 3.6 18 317-334 10-27 (30)
6 d2dkya1 a.60.1.3 (A:8-85) Dele 14.9 23 0.0017 24.8 0.8 20 243-262 18-37 (78)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 13.0 69 0.005 17.6 2.3 18 59-76 1-18 (27)
8 d2e74e1 f.23.24.1 (E:1-32) Pet 11.7 1.3E+02 0.0097 16.8 4.0 21 307-328 3-23 (32)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 11.1 1.8E+02 0.013 20.3 5.1 29 307-335 30-58 (100)
10 d1wfla_ g.80.1.1 (A:) Zinc fin 10.2 1.1E+02 0.0082 21.0 3.4 20 9-28 3-22 (74)
No 1
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.97 E-value=2.6 Score=24.49 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=16.9
Q ss_pred ecCcccCceEEEEEEecccc
Q 018735 281 YNTYSFSGKKKLVLSTTSWL 300 (351)
Q Consensus 281 ypv~~F~G~K~ivlst~Sw~ 300 (351)
=|+..++|.|+|-+....|-
T Consensus 6 kPItg~gg~kyisFE~R~WH 25 (29)
T d1x4la1 6 NPISGLGGTKYISFEERQWH 25 (29)
T ss_dssp BCCCCSSSCSCEECSSCEEC
T ss_pred CcccccCCceEEEeeccccc
Confidence 37889999999999888774
No 2
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.61 E-value=4.8 Score=23.28 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=15.7
Q ss_pred cCcccCceEEEEEEeccc
Q 018735 282 NTYSFSGKKKLVLSTTSW 299 (351)
Q Consensus 282 pv~~F~G~K~ivlst~Sw 299 (351)
|+..++|.|+|-+....|
T Consensus 7 PItg~gG~k~isFedR~W 24 (29)
T d1x68a1 7 PISGLTGAKFICFQDSQW 24 (29)
T ss_dssp CCCTTTTCCEEEETTEEE
T ss_pred cccccCCceEEEeehhhc
Confidence 788999999999887766
No 3
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=19.59 E-value=82 Score=21.08 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHH-HHHHHhcCCCCCCCcccccCC
Q 018735 314 VGGLCFFLALSF-TIVYLVKPRRLGDPSYLSWNR 346 (351)
Q Consensus 314 vG~i~~~~~i~f-li~~~~~pr~lgD~~~L~w~~ 346 (351)
+|++..++++++ ++.+++.+--+-|--..+|+.
T Consensus 30 Mgv~m~Lf~vfl~iiLeiYNss~lldgv~v~W~~ 63 (64)
T d2axth1 30 MAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKA 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCTTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhccceeeccccccccc
Confidence 455555555544 556888999999998899973
No 4
>d2h80a1 a.60.1.3 (A:11-81) Deleted in Liver Cancer 2, DLC2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.56 E-value=18 Score=25.00 Aligned_cols=20 Identities=30% Similarity=0.830 Sum_probs=16.7
Q ss_pred hHHHHHhcCCCchhHHhhhc
Q 018735 243 DLIVWMRTAALPTFRKLYGK 262 (351)
Q Consensus 243 ~FivWMr~Aalp~FrKLYg~ 262 (351)
+=--|+|.|+||-+-.||.-
T Consensus 13 eAC~WLraaGFpqYAqlyEd 32 (71)
T d2h80a1 13 EACDWLRAAGFPQYAQLYED 32 (71)
T ss_dssp HHHHHHHHTTCHHHHHTTTT
T ss_pred HHHHHHHHcCChHHHHHhhh
Confidence 44579999999999999863
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.95 E-value=86 Score=17.47 Aligned_cols=18 Identities=22% Similarity=0.541 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 018735 317 LCFFLALSFTIVYLVKPR 334 (351)
Q Consensus 317 i~~~~~i~fli~~~~~pr 334 (351)
..+++|+.|+.+.+.-|-
T Consensus 10 fac~i~lfffaiffrepp 27 (30)
T d2axtt1 10 FACIIALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 445566666666655543
No 6
>d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.88 E-value=23 Score=24.84 Aligned_cols=20 Identities=25% Similarity=0.800 Sum_probs=16.9
Q ss_pred hHHHHHhcCCCchhHHhhhc
Q 018735 243 DLIVWMRTAALPTFRKLYGK 262 (351)
Q Consensus 243 ~FivWMr~Aalp~FrKLYg~ 262 (351)
+=--|.|.|+||-+-.||.-
T Consensus 18 eAC~WLraaGFpqYAqlyEd 37 (78)
T d2dkya1 18 EACDWLRATGFPQYAQLYED 37 (78)
T ss_dssp HHHHHHHHHTCTTHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHhhc
Confidence 44579999999999999963
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.03 E-value=69 Score=17.57 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhhhhc
Q 018735 59 LVVGIAFVPIGITSLLAS 76 (351)
Q Consensus 59 ~~igiifi~iGi~l~~~s 76 (351)
+++|+++..+|-+++.+.
T Consensus 1 ivlgli~~tl~glf~aay 18 (27)
T d2e74g1 1 LVLGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CeeeehHHHHHHHHHHHH
Confidence 467888888887666554
No 8
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.66 E-value=1.3e+02 Score=16.79 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 018735 307 LGIAYLTVGGLCFFLALSFTIV 328 (351)
Q Consensus 307 Lgi~yivvG~i~~~~~i~fli~ 328 (351)
||.+|-+| .+.+++|+..-++
T Consensus 3 lgavfyiv-fialffgiavgii 23 (32)
T d2e74e1 3 LGAVFYIV-FIALFFGIAVGII 23 (32)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHH
T ss_pred eeeeHHHH-HHHHHHHHHhhhe
Confidence 45554332 3444444444333
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.12 E-value=1.8e+02 Score=20.34 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018735 307 LGIAYLTVGGLCFFLALSFTIVYLVKPRR 335 (351)
Q Consensus 307 Lgi~yivvG~i~~~~~i~fli~~~~~pr~ 335 (351)
..+.+++++...++.++++.+...++.|+
T Consensus 30 ~~v~~i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 30 GFILVIIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 34445555666666666665555455444
No 10
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.20 E-value=1.1e+02 Score=21.01 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 018735 9 SSTANPDAAGSPDPPAPRRS 28 (351)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (351)
+..+.|+...+.+.++++++
T Consensus 3 s~~~~p~~~~~~~~~~~~~k 22 (74)
T d1wfla_ 3 SGSSGPSSSQSEEKAPELPK 22 (74)
T ss_dssp CCCCSCCCCCCCCCCCCCCC
T ss_pred CccCCCcccccccccccCCC
Confidence 34444555555544444443
Done!