Query 018736
Match_columns 351
No_of_seqs 277 out of 1851
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:36:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02164 sulfotransferase 100.0 1.4E-76 3.1E-81 564.3 27.2 311 27-341 31-344 (346)
2 KOG1584 Sulfotransferase [Gene 100.0 2.1E-76 4.5E-81 540.8 23.6 289 37-342 1-296 (297)
3 PF00685 Sulfotransfer_1: Sulf 100.0 5.3E-39 1.2E-43 296.1 6.1 249 75-337 1-267 (267)
4 PF13469 Sulfotransfer_3: Sulf 98.7 3.4E-09 7.3E-14 92.9 0.6 24 237-262 191-214 (215)
5 KOG3988 Protein-tyrosine sulfo 98.5 4.8E-08 1E-12 88.9 3.1 148 162-339 175-328 (378)
6 PF09037 Sulphotransf: Stf0 su 97.6 7E-06 1.5E-10 75.5 -1.4 32 231-262 188-219 (245)
7 KOG3704 Heparan sulfate D-gluc 97.5 4.3E-05 9.2E-10 69.6 2.3 92 162-260 188-289 (360)
8 KOG3703 Heparan sulfate N-deac 97.0 0.0035 7.6E-08 62.5 8.7 164 163-346 686-867 (873)
9 PF06990 Gal-3-0_sulfotr: Gala 92.7 0.27 5.8E-06 48.6 6.3 125 70-203 62-189 (402)
10 KOG3922 Sulfotransferases [Pos 89.8 0.1 2.3E-06 48.7 0.2 102 76-186 79-182 (361)
11 PF03567 Sulfotransfer_2: Sulf 88.6 0.11 2.4E-06 46.8 -0.5 26 75-100 8-33 (253)
12 KOG4157 beta-1,6-N-acetylgluco 83.3 1.1 2.5E-05 44.1 3.5 168 69-263 198-368 (418)
13 COG4424 Uncharacterized protei 66.9 4.6 9.9E-05 35.9 2.4 50 233-284 189-238 (250)
14 COG4424 Uncharacterized protei 51.1 19 0.00042 32.1 3.6 26 77-102 7-32 (250)
15 PF07498 Rho_N: Rho terminatio 43.7 26 0.00056 22.9 2.5 37 240-276 1-37 (43)
16 KOG4651 Chondroitin 6-sulfotra 41.5 4.5 9.8E-05 38.8 -1.9 33 73-105 79-111 (324)
17 cd00808 GluRS_core catalytic c 35.8 46 0.001 30.5 3.8 53 208-262 12-69 (239)
18 COG1158 Rho Transcription term 34.5 35 0.00075 33.0 2.8 28 74-101 172-200 (422)
19 PF07582 AP_endonuc_2_N: AP en 30.2 1.6E+02 0.0034 20.5 4.8 31 229-259 13-43 (55)
20 PF13671 AAA_33: AAA domain; P 28.9 42 0.00091 27.1 2.2 20 78-97 2-22 (143)
21 PF01498 HTH_Tnp_Tc3_2: Transp 26.7 1.1E+02 0.0023 21.9 3.8 61 240-332 7-70 (72)
22 COG4088 Predicted nucleotide k 22.6 87 0.0019 28.4 3.0 25 78-102 4-29 (261)
23 cd00807 GlnRS_core catalytic c 22.2 1.2E+02 0.0027 27.7 4.1 53 208-262 12-69 (238)
24 PLN03223 Polycystin cation cha 22.1 1E+02 0.0022 35.3 4.0 87 238-344 1482-1568(1634)
25 TIGR03715 KxYKxGKxW KxYKxGKxW 20.9 79 0.0017 18.7 1.7 16 83-98 6-21 (29)
26 PF03484 B5: tRNA synthetase B 20.7 1.1E+02 0.0023 22.0 2.7 27 249-280 8-34 (70)
27 cd00418 GlxRS_core catalytic c 20.3 1.6E+02 0.0035 26.8 4.4 53 208-262 12-69 (230)
No 1
>PLN02164 sulfotransferase
Probab=100.00 E-value=1.4e-76 Score=564.29 Aligned_cols=311 Identities=47% Similarity=0.897 Sum_probs=267.9
Q ss_pred HHHHHHHhcCCCCCCCCCcc-ceeeCcEEcCCCcchhhHHHHhhhCCCCCCCeEEEcCCCccchHHHHHHHHHHhcCCCC
Q 018736 27 KGYRDKMATLPKYRGWSTLH-LCQYQGFWFQPKIGLEGVMWVQQRFKPRPTDVYLATNPKSGTTWLKAIVFSIMNRKRYN 105 (351)
Q Consensus 27 ~~~~~~~~~~p~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~f~~r~~DV~i~syPKSGTTW~~~il~~i~~~~~~~ 105 (351)
.+++.++++||.+.+|...+ ++.|+|+|+|... .++++.++.+|++|++||||||||||||||||+|+++|+++++++
T Consensus 31 ~~~~~~~~~lp~~~~~~~~~~~~~y~G~w~~~~~-~~~~~~~~~~f~~r~~DV~laSyPKsGTTWlq~iv~~i~~~~~~~ 109 (346)
T PLN02164 31 KRYQDLIATLPHKKGWRPKEPLIEYGGHWWLQPL-LEGLLHAQEFFQARPNDFLVCSYPKTGTTWLKALTFAIANRSRFD 109 (346)
T ss_pred HHHHHHHhhCCCCcCCCCCCCeEEECCEEechhh-hHHHHHHHHcCCCCCCCEEEEcCCCchhHHHHHHHHHHHcCCCcc
Confidence 37899999999999997655 8899999999976 588999999999999999999999999999999999999988765
Q ss_pred CCCCCCCCCCCCCCcccceeeeccCCCCCCCCCCCCCCCcEEEecCCCCCCCccccCCCCCeeeeecCCcceEEEeeehh
Q 018736 106 NFTTDHPLLKFSPHEVVPFMELDLFRTTPIADPEILPSPRILATHIAYNMLPESIQNSSCPIVYICRNPKDVFVSFWQFS 185 (351)
Q Consensus 106 ~~~~~~~~~~~~~~~~~p~le~~~~~~~~~~~~~~~~~pRiikTHl~~~~lp~~~~~~~~K~IyivRdPrDv~vS~y~~~ 185 (351)
.. .+++...+|++++||||.........+.++. ++||+||||+|++++|+++.++++|+|||+|||+|++||+|||.
T Consensus 110 ~~--~~pl~~~~p~~~vP~lE~~~~~~~~~~~l~~-~~PRlikTHlp~~~lP~~i~~~~~KiIyv~RnPkDv~VS~yhf~ 186 (346)
T PLN02164 110 DS--SNPLLKRNPHEFVPYIEIDFPFFPSVDVLKD-KGNTLFSTHIPYGLLPDSVVKSGCKMVYIWRDPKDTFISMWTFL 186 (346)
T ss_pred cc--cCcccccCccccCCceecccCCCCchhhhcc-CCCCeeEecCChhhCccccccCCceEEEEecCchhheeeHHHHH
Confidence 43 3678778889999999986432122334443 68999999999999999998999999999999999999999988
Q ss_pred hccCCCCCCCCCHHHHHHHhccCCCCCCCcHHHHHHHHHhhccCCCeEEEEechhhccChHHHHHHHHHHhCCCCChhhh
Q 018736 186 VKMRPKDLPELSSEEAFDLFCHGVTPCGPFWDQALGYWKASVEFPNRVLFLKYEDMKTEPLLCTKRIAEFLGQPFSLQEE 265 (351)
Q Consensus 186 ~~~~~~~~~~~~~~~f~~~f~~g~~~~g~~~~h~~~ww~~~~~~~~~vl~v~YEDL~~Dp~~~v~~I~~FLg~~~~~~~~ 265 (351)
..........++|+++++.|+.|...+|+||+|+++||....+.+++||+|+||||++||.++|++||+|||++++++++
T Consensus 187 ~~~~~~~~~~~s~ee~~e~f~~g~~~~G~y~dHv~~yw~~~~~~p~~VLfl~YEDmk~D~~~~v~ria~FLG~~~s~ee~ 266 (346)
T PLN02164 187 HKERSQQGPLNSLEESFDMFCRGLSVYGPYLDHVLGYWKAYQENPDRILFLKYETMRADPLPYVKRLAEFMGYGFTAEEE 266 (346)
T ss_pred hhccccCCCCCCHHHHHHHHHcCCCCCCcHHHHHHHHHHHhhcCCccEEEEEHHHHHHhHHHHHHHHHHHhCCCCchhhc
Confidence 76554432346899999999999999999999999999986435668999999999999999999999999999998866
Q ss_pred hhHHHHHHHHhcChHHHhhhhhhcCCCCcccc--ccCCcceeecCccCCCcCCCcHHHHHHHHHHHHhhcCCCCceee
Q 018736 266 ENGIVQEIVKLCSFENMSNLEVNRNGKSRVRA--EVKNDVFFRQGKVGDWKNHLTDEMIERLDQITKHKFDGTGLIVD 341 (351)
Q Consensus 266 ~~~~l~~iv~~~sf~~Mk~~~~~~~~~~~~~~--~~~~~~f~RKG~vGdWk~~ft~eq~~~~~~~~~e~l~~~g~~f~ 341 (351)
+++.+++|+++|||++||++++|..+...... ......|||||+||||||+||++|+++|+++++++|+++|+.|.
T Consensus 267 ~~~~v~~ive~~SFe~Mk~~e~n~~~~~~~~~~~~~~~~~FfRKG~vGdWkn~lt~e~~~r~d~~~~ekl~gsgl~~~ 344 (346)
T PLN02164 267 EKGVVEKVVKLCSFETLKNLEANKGEKDREDRPAVYANSAYFRKGKVGDWQNYLTPEMAARIDGLMEEKFKGTGLLEH 344 (346)
T ss_pred chHHHHHHHHHCCHHHHhhhHhhccccccccccccccCcceeeccCCCCCcccCCHHHHHHHHHHHHHHhcCCCCccc
Confidence 77789999999999999998877654311110 12455799999999999999999999999999999999999873
No 2
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=100.00 E-value=2.1e-76 Score=540.75 Aligned_cols=289 Identities=47% Similarity=0.872 Sum_probs=249.3
Q ss_pred CCCCCCCC-ccceeeCcEEcCCCcchhhHHHHhhhCCCCCCCeEEEcCCCccchHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 018736 37 PKYRGWST-LHLCQYQGFWFQPKIGLEGVMWVQQRFKPRPTDVYLATNPKSGTTWLKAIVFSIMNRKRYNNFTTDHPLLK 115 (351)
Q Consensus 37 p~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~f~~r~~DV~i~syPKSGTTW~~~il~~i~~~~~~~~~~~~~~~~~ 115 (351)
|...+|.+ ..+..|+|+++++.+ .+.+...+++|++||+||+||||||||||||++|+++|+++++.+... .+|+..
T Consensus 1 p~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~Fq~r~dDiiiaTyPKsGTTWlkel~~~i~~~~d~~~~~-~~pL~~ 78 (297)
T KOG1584|consen 1 PSEKGSRGRFKLVEYQGCWYPPKF-LQALLRVQKHFQARPDDVIIATYPKSGTTWLQELTFLILNRGDFEKAK-RHPLLE 78 (297)
T ss_pred CCccCcCCCcCeEEECCEEecHHH-HHHHHHHHhcCCCCCCCEEEEecCCCchHHHHHHHHHHHcCCCccccc-CCchhh
Confidence 34455554 678899999999977 777888778899999999999999999999999999999999876554 378888
Q ss_pred CCCCcccceeeeccCCCCCCCCCCCCCCCcEEEecCCCCCCCccccCCCCCeeeeecCCcceEEEeeehhhccCCCCCCC
Q 018736 116 FSPHEVVPFMELDLFRTTPIADPEILPSPRILATHIAYNMLPESIQNSSCPIVYICRNPKDVFVSFWQFSVKMRPKDLPE 195 (351)
Q Consensus 116 ~~~~~~~p~le~~~~~~~~~~~~~~~~~pRiikTHl~~~~lp~~~~~~~~K~IyivRdPrDv~vS~y~~~~~~~~~~~~~ 195 (351)
.+|+..+|++|...+. ...+..+++||+++||+|+.+||+++.++++|+||++|||+||+||+|||.++..... .+
T Consensus 79 ~~P~~e~p~~e~~~~~---~~~~~~l~SPRl~kTHlP~~lLp~s~~~~~cKvVYv~RNpKD~~VSy~hf~~~~~~~~-~~ 154 (297)
T KOG1584|consen 79 RNPHLEVPFLELQLYG---NDSAPDLPSPRLFKTHLPFQLLPESLKESKCKVVYVCRNPKDVLVSYYHFNRMLKTQP-GP 154 (297)
T ss_pred cCCceeeccccccccc---ccccccCCCCcceeccCChhhcchhhhcCCCcEEEEecCccceeeeHHHHHhhhccCC-CC
Confidence 8888888887776543 4456677899999999999999999999999999999999999999999999877765 35
Q ss_pred CCHHHHHHHhccCCCCCCCcHHHHHHHHHhhccCCCeEEEEechhhccChHHHHHHHHHHhCCCCChhhhhhHHHHHHHH
Q 018736 196 LSSEEAFDLFCHGVTPCGPFWDQALGYWKASVEFPNRVLFLKYEDMKTEPLLCTKRIAEFLGQPFSLQEEENGIVQEIVK 275 (351)
Q Consensus 196 ~~~~~f~~~f~~g~~~~g~~~~h~~~ww~~~~~~~~~vl~v~YEDL~~Dp~~~v~~I~~FLg~~~~~~~~~~~~l~~iv~ 275 (351)
++|++|++.||+|.+.||+||+||++||... ++.|||+++||||++||..+|+|||+|||+++++++ +++++.
T Consensus 155 ~~~e~~fe~F~~G~~~~Gp~~dHVl~~W~~~--~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~~Ee-----~~~~~~ 227 (297)
T KOG1584|consen 155 GTFEEFFESFCNGVVPYGPWWDHVLGYWELE--DPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFTKEE-----EDKGVV 227 (297)
T ss_pred CcHHHHHHHHhCCcCCcCChHHHHHHHHHhc--CCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCCHHH-----HhhhhH
Confidence 6799999999999999999999999999976 889999999999999999999999999999999998 677777
Q ss_pred hcChHHHhhh-----hhhcCCCCccccccCCcceeecCccCCCcCCCcHHHHHHHHHHHHhhcCC-CCceeee
Q 018736 276 LCSFENMSNL-----EVNRNGKSRVRAEVKNDVFFRQGKVGDWKNHLTDEMIERLDQITKHKFDG-TGLIVDT 342 (351)
Q Consensus 276 ~~sf~~Mk~~-----~~~~~~~~~~~~~~~~~~f~RKG~vGdWk~~ft~eq~~~~~~~~~e~l~~-~g~~f~~ 342 (351)
+.+|+.|+.+ +.|..+... +..+.|||||.|||||||||++|+++||.+++++|++ +|+.|.+
T Consensus 228 ~~~~~~~~~n~l~nle~n~~~~~~----~~~~~F~RKG~vGDWKn~~T~~~~ekfD~~~eekm~g~sgL~F~~ 296 (297)
T KOG1584|consen 228 HLSFELCSLNPLSNLEVNKTEKLL----HKISPFFRKGEVGDWKNYLTPEMNEKFDKIYEEKMEGCSGLKFRT 296 (297)
T ss_pred HHHHHHHhhccccCceeccccccc----ccchhhhcCCCcccccccCCHHHHHHHHHHHHHHhcCCCCccccc
Confidence 7677666643 333333211 2348899999999999999999999999999999999 8999863
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=100.00 E-value=5.3e-39 Score=296.14 Aligned_cols=249 Identities=32% Similarity=0.559 Sum_probs=181.0
Q ss_pred CCCeEEEcCCCccchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcccceeeecc---------------CC--CCCCCC
Q 018736 75 PTDVYLATNPKSGTTWLKAIVFSIMNRKRYNNFTTDHPLLKFSPHEVVPFMELDL---------------FR--TTPIAD 137 (351)
Q Consensus 75 ~~DV~i~syPKSGTTW~~~il~~i~~~~~~~~~~~~~~~~~~~~~~~~p~le~~~---------------~~--~~~~~~ 137 (351)
+.+|||+|+|||||||+++||............. .+..... ....|+++... .. ......
T Consensus 1 ~~~i~I~g~prSGTt~l~~lL~~h~~~~~~~~~~--~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (267)
T PF00685_consen 1 PPPIFIVGAPRSGTTWLRELLNSHPDIFSFSPFK--EPHFFNN-RDYSPFLEWYRDFFPFRIKPQEHIPSFSHVESKIVR 77 (267)
T ss_dssp TTSEEEEESTTSSHHHHHHHHHHHHTTTETHHHT--SSHHTTT-HHHSTBTTHHHHTSHEEGTTTEEEGGCTTTETHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHhCcccccccccc--cccccch-hhhhhhhhhhhcccccccccccccccccccchhHHH
Confidence 5799999999999999999999965433220000 0111011 23344444310 00 000112
Q ss_pred CCCCCCCcEEEecCCCCCCCccccCCCCCeeeeecCCcceEEEeeehhhccCCCCCCCC-CHHHHHHHhccCCCCCCCcH
Q 018736 138 PEILPSPRILATHIAYNMLPESIQNSSCPIVYICRNPKDVFVSFWQFSVKMRPKDLPEL-SSEEAFDLFCHGVTPCGPFW 216 (351)
Q Consensus 138 ~~~~~~pRiikTHl~~~~lp~~~~~~~~K~IyivRdPrDv~vS~y~~~~~~~~~~~~~~-~~~~f~~~f~~g~~~~g~~~ 216 (351)
+...+.+++++||+++..++..+..+++|+|+|+|||+|+++|.+++........ ..+ .++++++.++.....++.|+
T Consensus 78 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~KiI~ivRdP~d~~~S~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 156 (267)
T PF00685_consen 78 LRDLPSPRFIKTHLPLDLLPKKLLFPNAKIIYIVRDPRDVIVSRYKHSWRSNPFS-DPGQRFEEFVDWFLQPRLLYGSWA 156 (267)
T ss_dssp HHCSCSSEEEEE-S-GGGSHHHHHHTTEEEEEEE--HHHHHHHHHHHHHHBTTST-THHSHHHHHHHHHHTTHSTTSCHH
T ss_pred HhhccCchhhhhccccccccccccccccccceecccccchhHHHHHHHHhccccc-ccchhhhhhhhhhhcccccccccc
Confidence 2345689999999999888765556899999999999999999999887665322 122 37888888887777788999
Q ss_pred HHHHHHHHhhccCCCeEEEEechhhccChHHHHHHHHHHhCCCCChhhhhhHHHHHHHHhcChHHHhhhhhhcCCCCccc
Q 018736 217 DQALGYWKASVEFPNRVLFLKYEDMKTEPLLCTKRIAEFLGQPFSLQEEENGIVQEIVKLCSFENMSNLEVNRNGKSRVR 296 (351)
Q Consensus 217 ~h~~~ww~~~~~~~~~vl~v~YEDL~~Dp~~~v~~I~~FLg~~~~~~~~~~~~l~~iv~~~sf~~Mk~~~~~~~~~~~~~ 296 (351)
+++..||... ..+++++|+||||+.||.+++++|++|||++++++. ++.++++++++.|+............
T Consensus 157 ~~~~~~~~~~--~~~~~~~i~YEdl~~dp~~~l~~I~~FLgl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~- 228 (267)
T PF00685_consen 157 DHLKSWLSSF--DRDNVLIIRYEDLVADPEKELKRICDFLGLPFSDEP-----LDKIVEKSSFDNMRSKEARNKSKLSD- 228 (267)
T ss_dssp HHHHHHHHHT--TTSTEEEEEHHHHHHSHHHHHHHHHHHTTSS--HHH-----HHHHHHHTSHHHHHHETTTSSTTSCT-
T ss_pred ccccchhhhh--ccchhhhhcchhhhhhhhHHHHHHHHHHhhccchhh-----hHHHHHhhhhhhhccccccccccccc-
Confidence 9999999866 778999999999999999999999999999999887 99999999999999754322111000
Q ss_pred cccCCcceeecCccCCCcCCCcHHHHHHHHHHHHhhcCCCC
Q 018736 297 AEVKNDVFFRQGKVGDWKNHLTDEMIERLDQITKHKFDGTG 337 (351)
Q Consensus 297 ~~~~~~~f~RKG~vGdWk~~ft~eq~~~~~~~~~e~l~~~g 337 (351)
.....++|+|.+|+||++||+++++.|+++|++.|+.+|
T Consensus 229 --~~~~~~~~~~~~~~W~~~l~~e~~~~i~~~~~~~m~~~~ 267 (267)
T PF00685_consen 229 --GSSSRFFRKGKSGRWKNELSPEQIDRIERICGDAMRELG 267 (267)
T ss_dssp --TTTSTSSEET-STGGGGTSBHHHHHHHHHHHHHHHTTSS
T ss_pred --CCcceeeeecccCcccccCCHHHHHHHHHHHHHHHccCC
Confidence 124678999999999999999999999999999999987
No 4
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=98.70 E-value=3.4e-09 Score=92.94 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=18.5
Q ss_pred echhhccChHHHHHHHHHHhCCCCCh
Q 018736 237 KYEDMKTEPLLCTKRIAEFLGQPFSL 262 (351)
Q Consensus 237 ~YEDL~~Dp~~~v~~I~~FLg~~~~~ 262 (351)
+||||.+||.+++++|++ + +++++
T Consensus 191 ~yedl~~~p~~~l~~i~~-~-~~l~~ 214 (215)
T PF13469_consen 191 RYEDLVADPEATLRRICA-L-LELTR 214 (215)
T ss_dssp EHHHHHHSHHHHHHHHHH-C-----H
T ss_pred CHHHHHHCHHHHHHHHHH-h-hCCcC
Confidence 679999999999999999 7 77653
No 5
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.8e-08 Score=88.91 Aligned_cols=148 Identities=14% Similarity=0.213 Sum_probs=85.5
Q ss_pred CCCCCeeeeecCCcceEEEeeehhhccCCCCCCCCCHHHHHHHhccCCCCCCCcHHHHHHH-HHhhc-cCCCeEEEEech
Q 018736 162 NSSCPIVYICRNPKDVFVSFWQFSVKMRPKDLPELSSEEAFDLFCHGVTPCGPFWDQALGY-WKASV-EFPNRVLFLKYE 239 (351)
Q Consensus 162 ~~~~K~IyivRdPrDv~vS~y~~~~~~~~~~~~~~~~~~f~~~f~~g~~~~g~~~~h~~~w-w~~~~-~~~~~vl~v~YE 239 (351)
.|++|+++++||.|.++-|... ++..... -+...|.+.+. -|++..+- ...-. ....+++.|.||
T Consensus 175 fPNAKfllMvRDgRAtVhSmIs--RKVtIaG---fdlssyr~c~t--------kWN~aie~M~~QC~~vg~~~Cl~VyYE 241 (378)
T KOG3988|consen 175 FPNAKFLLMVRDGRATVHSMIS--RKVTIAG---FDLSSYRQCMT--------KWNQAIEVMYFQCMEVGKKKCLKVYYE 241 (378)
T ss_pred CCCceEEEEEecchHHHHHHHh--ccceecc---ccchHHHHHHH--------HHHHHHHHHHHHHHhccccchhHHHHH
Confidence 4799999999999999888753 2221111 12333332211 12221110 11100 134589999999
Q ss_pred hhccChHHHHHHHHHHhCCCCChhhhhhHHHHHHHHhcChHHHhhhhhhcCCCCcccc-ccCC---cceeecCccCCCcC
Q 018736 240 DMKTEPLLCTKRIAEFLGQPFSLQEEENGIVQEIVKLCSFENMSNLEVNRNGKSRVRA-EVKN---DVFFRQGKVGDWKN 315 (351)
Q Consensus 240 DL~~Dp~~~v~~I~~FLg~~~~~~~~~~~~l~~iv~~~sf~~Mk~~~~~~~~~~~~~~-~~~~---~~f~RKG~vGdWk~ 315 (351)
.|+..|++.+++|.+||++|+++.. +.|-. |-. .-|..+... .... ..-+.-+.--.|-.
T Consensus 242 qLVlhPe~~mr~Il~FLdipw~d~v---------LhHed---lIg----k~~gVsLskvErSsdQVikpVNl~AlskWvg 305 (378)
T KOG3988|consen 242 QLVLHPEEWMRRILKFLDIPWSDAV---------LHHED---LIG----KPGGVSLSKVERSSDQVIKPVNLEALSKWVG 305 (378)
T ss_pred HHHhCHHHHHHHHHHHhCCCcHHHH---------HhHHH---hcC----CCCCCChhhhhccHhhhhccccHHHHHHHhc
Confidence 9999999999999999999998874 22211 110 000000000 0000 11122234457999
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCce
Q 018736 316 HLTDEMIERLDQITKHKFDGTGLI 339 (351)
Q Consensus 316 ~ft~eq~~~~~~~~~e~l~~~g~~ 339 (351)
.++++..+.++.+ +.-|+.+||.
T Consensus 306 ~ip~dvvrdma~i-APmL~~LGYD 328 (378)
T KOG3988|consen 306 CIPEDVVRDMADI-APMLAILGYD 328 (378)
T ss_pred cCCHHHHHHHHHH-HHHHHHhCCC
Confidence 9999999998755 5677888886
No 6
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=97.64 E-value=7e-06 Score=75.54 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=26.0
Q ss_pred CeEEEEechhhccChHHHHHHHHHHhCCCCCh
Q 018736 231 NRVLFLKYEDMKTEPLLCTKRIAEFLGQPFSL 262 (351)
Q Consensus 231 ~~vl~v~YEDL~~Dp~~~v~~I~~FLg~~~~~ 262 (351)
.+-+.|.||||.+||.+++.+|++|||++...
T Consensus 188 i~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~~ 219 (245)
T PF09037_consen 188 IEPLEITYEDLLADPQKTVARVLDFLGVDPPL 219 (245)
T ss_dssp ---EEEEHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred CCeeEEEHHHHHhCHHHHHHHHHHHhCCCCcc
Confidence 34588999999999999999999999997644
No 7
>KOG3704 consensus Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=4.3e-05 Score=69.60 Aligned_cols=92 Identities=17% Similarity=0.249 Sum_probs=66.6
Q ss_pred CCCCCeeeeecCCcceEEEeeehhhccCCCCCCCCCHHHHHHHhccC---C-------CCCCCcHHHHHHHHHhhccCCC
Q 018736 162 NSSCPIVYICRNPKDVFVSFWQFSVKMRPKDLPELSSEEAFDLFCHG---V-------TPCGPFWDQALGYWKASVEFPN 231 (351)
Q Consensus 162 ~~~~K~IyivRdPrDv~vS~y~~~~~~~~~~~~~~~~~~f~~~f~~g---~-------~~~g~~~~h~~~ww~~~~~~~~ 231 (351)
++..|.|+|+|||.-.++|-|--.-..+.. .-+|+.+ .|.++ . +..|-|..|+..|...- .-.
T Consensus 188 ~pd~KLivvvR~PvtRaiSDyTQt~sk~~~---~P~fe~l--afkn~~~g~id~~w~ai~iglY~~Hle~WL~yF--pL~ 260 (360)
T KOG3704|consen 188 NPDTKLIVVVRDPVTRAISDYTQTLSKKPD---IPTFEVL--AFKNRTAGLIDTSWKAIRIGLYAVHLENWLRYF--PLR 260 (360)
T ss_pred CCCceEEEEEcCchhhhHHHHHHHHhcCCC---CCceeee--eeecCccceeecchhhhhhhHHHHHHHHHHHhC--chh
Confidence 578999999999999999998633222111 1123322 12222 1 22345778999988776 557
Q ss_pred eEEEEechhhccChHHHHHHHHHHhCCCC
Q 018736 232 RVLFLKYEDMKTEPLLCTKRIAEFLGQPF 260 (351)
Q Consensus 232 ~vl~v~YEDL~~Dp~~~v~~I~~FLg~~~ 260 (351)
++|+|.=|.|+.||.+++.++-+|||+.-
T Consensus 261 q~lfVsGerli~dPa~E~~rVqdFLgLkr 289 (360)
T KOG3704|consen 261 QILFVSGERLISDPAGELGRVQDFLGLKR 289 (360)
T ss_pred heEEecCceeecCcHHHHHHHHHHhcccc
Confidence 99999999999999999999999999973
No 8
>KOG3703 consensus Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0035 Score=62.51 Aligned_cols=164 Identities=15% Similarity=0.163 Sum_probs=94.6
Q ss_pred CCCCeeeeecCCcceEEEeeehhhccCCCCC---------CCC-CHHHHHHHhccCC-CCCCCcHHHHHHHHHhhccCCC
Q 018736 163 SSCPIVYICRNPKDVFVSFWQFSVKMRPKDL---------PEL-SSEEAFDLFCHGV-TPCGPFWDQALGYWKASVEFPN 231 (351)
Q Consensus 163 ~~~K~IyivRdPrDv~vS~y~~~~~~~~~~~---------~~~-~~~~f~~~f~~g~-~~~g~~~~h~~~ww~~~~~~~~ 231 (351)
|.+|+|-|.-||-|.+.|+|.|.+....... ..+ +-...+.. ++.. +.-|-|..|+..|...- ...
T Consensus 686 P~AKIvtILinPadRAYSWyQHqraH~DpvAl~~~fyeVIsas~~aps~lk~-lq~RClvpG~Ya~HlerWL~y~--~~~ 762 (873)
T KOG3703|consen 686 PHAKIVTILINPADRAYSWYQHQRAHEDPVALNYSFYEVISASSSAPSALKA-LQNRCLVPGWYATHLERWLTYF--PAQ 762 (873)
T ss_pred CcceEEEEEeChHHhhhHHHHHHhhcCCcceecceeEEEEecCCCCcHHHHH-HHHhccCcchHHHHHHHHHHhC--Ccc
Confidence 6799999999999999999998874332110 000 01111111 1111 12344557888887776 667
Q ss_pred eEEEEechhhccChHHHHHHHHHHhCCCCChhhhhhHHHHHHHHhcChHHHhhhhhhcCCCCccccccCCcceeecCccC
Q 018736 232 RVLFLKYEDMKTEPLLCTKRIAEFLGQPFSLQEEENGIVQEIVKLCSFENMSNLEVNRNGKSRVRAEVKNDVFFRQGKVG 311 (351)
Q Consensus 232 ~vl~v~YEDL~~Dp~~~v~~I~~FLg~~~~~~~~~~~~l~~iv~~~sf~~Mk~~~~~~~~~~~~~~~~~~~~f~RKG~vG 311 (351)
++++|.=+.|..||..++..+-.|||+...-. . -+...|+--|.--. ...+.+ +..-.-| .-|
T Consensus 763 QlliiDg~qLr~~Pa~vm~~~qkfLgv~p~~~------y---~~~lrfd~~KGF~C---qllegg----ktkCLGk-SKG 825 (873)
T KOG3703|consen 763 QLLIIDGQQLRTNPATVMNELQKFLGVTPELN------Y---SETLRFDPKKGFWC---QLLEGG----KTKCLGK-SKG 825 (873)
T ss_pred cEEEEccHHhccCcHHHHHHHHHHhCCCCCCC------h---hheeeecCCCceeE---eeccCC----ccccccc-ccC
Confidence 99999999999999999999999999943211 1 12233433222100 000000 1111111 112
Q ss_pred CCcCCCcHHHHHHHHHHHHh-------hcCCCCceeeeeccc
Q 018736 312 DWKNHLTDEMIERLDQITKH-------KFDGTGLIVDTWIDH 346 (351)
Q Consensus 312 dWk~~ft~eq~~~~~~~~~e-------~l~~~g~~f~~~~~~ 346 (351)
.=--.+.++....+...+.. .|...|...+.|+.+
T Consensus 826 RkYP~Md~~sr~fL~~yyr~hN~eLsKlL~klgqpiPsWLre 867 (873)
T KOG3703|consen 826 RKYPEMDEESRTFLSDYYRDHNVELSKLLHKLGQPIPSWLRE 867 (873)
T ss_pred CcCCCCChHHHHHHHHHHhhccHHHHHHHHHcCCCCcHHHHH
Confidence 22245677777777776653 466778888888653
No 9
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=92.67 E-value=0.27 Score=48.64 Aligned_cols=125 Identities=19% Similarity=0.215 Sum_probs=67.6
Q ss_pred hCCCCCCCeEEEcCCCccchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcccceeeeccCCCCCCCCCCCCCCCcEEEe
Q 018736 70 RFKPRPTDVYLATNPKSGTTWLKAIVFSIMNRKRYNNFTTDHPLLKFSPHEVVPFMELDLFRTTPIADPEILPSPRILAT 149 (351)
Q Consensus 70 ~f~~r~~DV~i~syPKSGTTW~~~il~~i~~~~~~~~~~~~~~~~~~~~~~~~p~le~~~~~~~~~~~~~~~~~pRiikT 149 (351)
.=+|+.+=|||=|. |||+|=++.|+.......+...+. |... ...-.-|..-.. .............++..
T Consensus 62 ~C~P~~nIvFlKTH-KTgSSTv~nIL~Rfg~~~nL~~al---P~~~-~~~~~~P~~f~~----~~v~~~~~~~~~nIl~~ 132 (402)
T PF06990_consen 62 SCQPKTNIVFLKTH-KTGSSTVQNILFRFGEKHNLTFAL---PRGG-RNQFGYPAPFNA----RFVEGYPPGGRFNILCH 132 (402)
T ss_pred cccccceEEEEecC-CcccHHHHHHHHHHHHHcCCEEec---CCCC-CCCCCCCCcCCc----cccccCCCCCCceEEee
Confidence 34555555666665 999999999998765433222110 1100 000011111000 00111112234569999
Q ss_pred cCCCCCC-CccccCCCCCeeeeecCCcceEEEeeehhhccCCCC--CCCCCHHHHHH
Q 018736 150 HIAYNML-PESIQNSSCPIVYICRNPKDVFVSFWQFSVKMRPKD--LPELSSEEAFD 203 (351)
Q Consensus 150 Hl~~~~l-p~~~~~~~~K~IyivRdPrDv~vS~y~~~~~~~~~~--~~~~~~~~f~~ 203 (351)
|+.|+.- -..+..+++++|-|+|||...+.|.|+|.+...+.. ....++++|++
T Consensus 133 H~rfn~~~~~~lmP~dt~yiTILRdP~~~feS~f~Yy~~~~~~~~~~~~~~l~~FL~ 189 (402)
T PF06990_consen 133 HMRFNRPEVRKLMPPDTKYITILRDPVSHFESSFNYYKRYAPAFRKAPNNSLEEFLE 189 (402)
T ss_pred hhccCHHHHHHhCCCCCeEEEEEcCHHHHHHhHHHHhhccchhhhcCCcchHHHHHh
Confidence 9988630 112223578999999999999999999886432211 11234676665
No 10
>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]
Probab=89.79 E-value=0.1 Score=48.68 Aligned_cols=102 Identities=15% Similarity=0.279 Sum_probs=57.1
Q ss_pred CCeEEEcCCCccchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcccceeeeccCCCCCCCCCC--CCCCCcEEEecCCC
Q 018736 76 TDVYLATNPKSGTTWLKAIVFSIMNRKRYNNFTTDHPLLKFSPHEVVPFMELDLFRTTPIADPE--ILPSPRILATHIAY 153 (351)
Q Consensus 76 ~DV~i~syPKSGTTW~~~il~~i~~~~~~~~~~~~~~~~~~~~~~~~p~le~~~~~~~~~~~~~--~~~~pRiikTHl~~ 153 (351)
.-|+----||||+|=...|+.-|.....+. +...+.+..-+-+-... ...-...+. ..+.|-++.-|..+
T Consensus 79 ~vViyNRVpKtGStTf~niaydL~ekn~F~-------vlh~nvtkn~~vlsl~d-Q~qfvknIssw~e~~P~~yhgHV~F 150 (361)
T KOG3922|consen 79 EVVIYNRVPKTGSTTFVNIAYDLSEKNGFH-------VLHINVTKNETVLSLPD-QQQFVKNISSWTEMKPALYHGHVAF 150 (361)
T ss_pred eEEEEecCCCccchhHHHHHHHHHhccCce-------EEEeeccccceeeccHH-HHHHHHhhccccccCcceeeeeeee
Confidence 346667789999998888887776543332 11111111111110000 000011122 23578899989887
Q ss_pred CCCCccccCCCCCeeeeecCCcceEEEeeehhh
Q 018736 154 NMLPESIQNSSCPIVYICRNPKDVFVSFWQFSV 186 (351)
Q Consensus 154 ~~lp~~~~~~~~K~IyivRdPrDv~vS~y~~~~ 186 (351)
--+.+ +--++.-+|-|+|||.+.++|+|+|.+
T Consensus 151 ldFsk-Fgi~~PIYINvIRdPveRllS~yyflR 182 (361)
T KOG3922|consen 151 LDFSK-FGIARPIYINVIRDPVERLLSYYYFLR 182 (361)
T ss_pred eehhh-hCCCCceEEeeeccHHHHHHhHhhhhc
Confidence 33221 111345677789999999999999876
No 11
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=88.62 E-value=0.11 Score=46.78 Aligned_cols=26 Identities=27% Similarity=0.412 Sum_probs=18.1
Q ss_pred CCCeEEEcCCCccchHHHHHHHHHHh
Q 018736 75 PTDVYLATNPKSGTTWLKAIVFSIMN 100 (351)
Q Consensus 75 ~~DV~i~syPKSGTTW~~~il~~i~~ 100 (351)
...|+.+-.||||.|=+..++..+..
T Consensus 8 ~~~i~f~~ipK~g~Ts~~~~l~~~~~ 33 (253)
T PF03567_consen 8 KHKIIFCHIPKTGGTSLKSILRRLYG 33 (253)
T ss_dssp --EEEE---SSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhh
Confidence 44578899999999999999888775
No 12
>KOG4157 consensus beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=83.33 E-value=1.1 Score=44.14 Aligned_cols=168 Identities=14% Similarity=0.193 Sum_probs=87.4
Q ss_pred hhCCCCCCCeEEEcCCCccchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcccceeeeccCCCC--CCCCCCCCCCCcE
Q 018736 69 QRFKPRPTDVYLATNPKSGTTWLKAIVFSIMNRKRYNNFTTDHPLLKFSPHEVVPFMELDLFRTT--PIADPEILPSPRI 146 (351)
Q Consensus 69 ~~f~~r~~DV~i~syPKSGTTW~~~il~~i~~~~~~~~~~~~~~~~~~~~~~~~p~le~~~~~~~--~~~~~~~~~~pRi 146 (351)
..+.|-..-+-..|+|+.|+||++.++..+..--.. .-+......... +.........-..
T Consensus 198 ~~~~p~ss~~~~st~~~~~~t~~~~~~~tat~~~t~-----------------s~y~~g~~~~~~~~~~~n~~~~~~~~~ 260 (418)
T KOG4157|consen 198 RSSLPSSTAVPLSSFPGLGNTWARYLIQQATGFLTG-----------------SIYKDGGLLKTGFPGERNHVCNSNVSL 260 (418)
T ss_pred cccCCCCCcccceeeeecccceeeeeeeceeeEeee-----------------eEEeccccccccccccccccccceeee
Confidence 445555666889999999999999888775421000 001110000000 0000011123456
Q ss_pred EEecCCCCCCCccccCCCCCeeeeecCCcceEEEeeehhhccCCCCCCCCCHH-HHHHHhccCCCCCCCcHHHHHHHHHh
Q 018736 147 LATHIAYNMLPESIQNSSCPIVYICRNPKDVFVSFWQFSVKMRPKDLPELSSE-EAFDLFCHGVTPCGPFWDQALGYWKA 225 (351)
Q Consensus 147 ikTHl~~~~lp~~~~~~~~K~IyivRdPrDv~vS~y~~~~~~~~~~~~~~~~~-~f~~~f~~g~~~~g~~~~h~~~ww~~ 225 (351)
+|+|...... .......|.++|+|.-.++..................+. ..++.+..+ ....|-.|..+ |..
T Consensus 261 ~~~~~~~~~v----~~~~~~~i~ll~~~~~~~~~~~~r~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~ss~~~~-w~~ 333 (418)
T KOG4157|consen 261 VKTGEWGSVV----GAVFSAAILLLRDPEKAYIAEFNRKSGGHIGFASPKSYKSKKWPQFVSN--KLSGWSSHTLS-WAR 333 (418)
T ss_pred eecceeccee----eecchhheeeeccccccccccccccccccccccccchhccccccccccC--CCCCccccchh-hhc
Confidence 7777765521 112345677888887555554332211111000000111 011122221 11123356666 444
Q ss_pred hccCCCeEEEEechhhccChHHHHHHHHHHhCCCCChh
Q 018736 226 SVEFPNRVLFLKYEDMKTEPLLCTKRIAEFLGQPFSLQ 263 (351)
Q Consensus 226 ~~~~~~~vl~v~YEDL~~Dp~~~v~~I~~FLg~~~~~~ 263 (351)
. ..+++.++||+|..++...+..+..|+|.+..++
T Consensus 334 ~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (418)
T KOG4157|consen 334 K---GTGSLVVFYDDLVHPTVAPLRLIVDFLQHPVPES 368 (418)
T ss_pred c---cccceeEEeecccccccccccccccccCcccccc
Confidence 3 2356999999999999999999999999877654
No 13
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.91 E-value=4.6 Score=35.94 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=37.3
Q ss_pred EEEEechhhccChHHHHHHHHHHhCCCCChhhhhhHHHHHHHHhcChHHHhh
Q 018736 233 VLFLKYEDMKTEPLLCTKRIAEFLGQPFSLQEEENGIVQEIVKLCSFENMSN 284 (351)
Q Consensus 233 vl~v~YEDL~~Dp~~~v~~I~~FLg~~~~~~~~~~~~l~~iv~~~sf~~Mk~ 284 (351)
-+-|-||.|.+||...+.+||+.||++....- .-.+++..+..|-+-|..
T Consensus 189 p~riaYe~Lsadp~aava~~~ealgv~~p~a~--~p~~a~qad~~s~eWv~R 238 (250)
T COG4424 189 PIRIAYEVLSADPTAAVASVLEALGVDPPLAP--APMLARQADQRSDEWVDR 238 (250)
T ss_pred HHHHhHHHHccCcHHHHHHHHHHhCCCCCCCc--CchHHHhhhhhhHHHHHH
Confidence 34578999999999999999999999876432 122566666666666664
No 14
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.07 E-value=19 Score=32.08 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=21.2
Q ss_pred CeEEEcCCCccchHHHHHHHHHHhcC
Q 018736 77 DVYLATNPKSGTTWLKAIVFSIMNRK 102 (351)
Q Consensus 77 DV~i~syPKSGTTW~~~il~~i~~~~ 102 (351)
--+|+|-||||+||+..+|..--+.|
T Consensus 7 ~Ylilt~pRSGStlLckllaatG~sG 32 (250)
T COG4424 7 PYLILTTPRSGSTLLCKLLAATGCSG 32 (250)
T ss_pred ceeEecCCCCcchHHHHHHHhcCCCC
Confidence 45799999999999999887755444
No 15
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=43.71 E-value=26 Score=22.87 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=25.6
Q ss_pred hhccChHHHHHHHHHHhCCCCChhhhhhHHHHHHHHh
Q 018736 240 DMKTEPLLCTKRIAEFLGQPFSLQEEENGIVQEIVKL 276 (351)
Q Consensus 240 DL~~Dp~~~v~~I~~FLg~~~~~~~~~~~~l~~iv~~ 276 (351)
||.+-+..+++.||.-+|++-....++..++.+|++.
T Consensus 1 eL~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~~ 37 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIEGYSKMRKQELIFAILKA 37 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHH
Confidence 5677788999999999999765554555667777654
No 16
>KOG4651 consensus Chondroitin 6-sulfotransferase and related sulfotransferases [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=41.54 E-value=4.5 Score=38.81 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=26.5
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHHHhcCCCC
Q 018736 73 PRPTDVYLATNPKSGTTWLKAIVFSIMNRKRYN 105 (351)
Q Consensus 73 ~r~~DV~i~syPKSGTTW~~~il~~i~~~~~~~ 105 (351)
.-.-.+..+.-|||++|-+..|+..|.+.+.+.
T Consensus 79 apk~kl~~C~I~Ksms~l~~nimc~L~n~~~y~ 111 (324)
T KOG4651|consen 79 APKYKLIYCEIPKSMSTLWTNIMCLLYNETQYT 111 (324)
T ss_pred CCCCceEEEeecccHhhhhhhhheeEeChhhhc
Confidence 345578899999999999999998887766543
No 17
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=35.77 E-value=46 Score=30.47 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=38.0
Q ss_pred CCCCCCCcHHHHHHHHHhhccCCCeEEEEechhhcc-----ChHHHHHHHHHHhCCCCCh
Q 018736 208 GVTPCGPFWDQALGYWKASVEFPNRVLFLKYEDMKT-----EPLLCTKRIAEFLGQPFSL 262 (351)
Q Consensus 208 g~~~~g~~~~h~~~ww~~~~~~~~~vl~v~YEDL~~-----Dp~~~v~~I~~FLg~~~~~ 262 (351)
|....|....-+.+|..++ ...-.+++|.||.-. +-...+.+.++.||+..++
T Consensus 12 G~LHlG~~~~al~n~l~ar--~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~ 69 (239)
T cd00808 12 GFLHIGGARTALFNYLFAR--KHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDE 69 (239)
T ss_pred CcccHHHHHHHHHHHHHHH--HcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCc
Confidence 4456677777888888877 345578899999632 2235667777899999886
No 18
>COG1158 Rho Transcription termination factor [Transcription]
Probab=34.50 E-value=35 Score=33.02 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=21.1
Q ss_pred CCCCeEEEcCCCcc-chHHHHHHHHHHhc
Q 018736 74 RPTDVYLATNPKSG-TTWLKAIVFSIMNR 101 (351)
Q Consensus 74 r~~DV~i~syPKSG-TTW~~~il~~i~~~ 101 (351)
+...-+||+.||+| ||.+|.|...|..+
T Consensus 172 kGQR~LIVAPPkaGKT~lLq~IA~aIt~N 200 (422)
T COG1158 172 KGQRGLIVAPPKAGKTTLLQNIANAITTN 200 (422)
T ss_pred CCceeeEecCCCCCchHHHHHHHHHHhcC
Confidence 45567899999999 55777777777754
No 19
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=30.22 E-value=1.6e+02 Score=20.48 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=22.2
Q ss_pred CCCeEEEEechhhccChHHHHHHHHHHhCCC
Q 018736 229 FPNRVLFLKYEDMKTEPLLCTKRIAEFLGQP 259 (351)
Q Consensus 229 ~~~~vl~v~YEDL~~Dp~~~v~~I~~FLg~~ 259 (351)
+-.-++.|-+||...++..-+++-++||..-
T Consensus 13 GYdG~~siE~ED~~~~~~~G~~~a~~~lr~~ 43 (55)
T PF07582_consen 13 GYDGWLSIEHEDALMDPEEGAREAAAFLRKL 43 (55)
T ss_dssp T--SEEEE---STTTSHHHHHHHHHHHHHTT
T ss_pred CCCceEEEEeecCCCCHHHHHHHHHHHHHHh
Confidence 3346889999999999999999999998543
No 20
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=28.90 E-value=42 Score=27.07 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=16.1
Q ss_pred eEEEcCCCcc-chHHHHHHHH
Q 018736 78 VYLATNPKSG-TTWLKAIVFS 97 (351)
Q Consensus 78 V~i~syPKSG-TTW~~~il~~ 97 (351)
|++++.|-|| |||.+++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 7899999999 6787777644
No 21
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=26.71 E-value=1.1e+02 Score=21.87 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=28.9
Q ss_pred hhccChHHHHHHHHHHh---CCCCChhhhhhHHHHHHHHhcChHHHhhhhhhcCCCCccccccCCcceeecCccCCCcCC
Q 018736 240 DMKTEPLLCTKRIAEFL---GQPFSLQEEENGIVQEIVKLCSFENMSNLEVNRNGKSRVRAEVKNDVFFRQGKVGDWKNH 316 (351)
Q Consensus 240 DL~~Dp~~~v~~I~~FL---g~~~~~~~~~~~~l~~iv~~~sf~~Mk~~~~~~~~~~~~~~~~~~~~f~RKG~vGdWk~~ 316 (351)
...+||..+...|..-| |..++... |.+++....| ++..-.|+-.
T Consensus 7 ~v~~~p~~s~~~i~~~l~~~~~~vS~~T-----I~r~L~~~g~---------------------------~~~~~~~kP~ 54 (72)
T PF01498_consen 7 MVRRNPRISAREIAQELQEAGISVSKST-----IRRRLREAGL---------------------------KKRKARKKPF 54 (72)
T ss_dssp ---------HHHHHHHT---T--S-HHH-----HHHHHHHT-E---------------------------EEETTEEEES
T ss_pred HHHHCCCCCHHHHHHHHHHccCCcCHHH-----HHHHHHHcCc---------------------------cccccccCCC
Confidence 35678999999999999 99998887 7666543211 1245566778
Q ss_pred CcHHHHHHHHHHHHhh
Q 018736 317 LTDEMIERLDQITKHK 332 (351)
Q Consensus 317 ft~eq~~~~~~~~~e~ 332 (351)
||+.+...=-+.+.+.
T Consensus 55 Ls~~~~~~Rl~fA~~h 70 (72)
T PF01498_consen 55 LSPKHKKKRLEFAKEH 70 (72)
T ss_dssp --HHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHhhhc
Confidence 8888876644455444
No 22
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=22.64 E-value=87 Score=28.42 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=17.9
Q ss_pred eEEEcCCCcc-chHHHHHHHHHHhcC
Q 018736 78 VYLATNPKSG-TTWLKAIVFSIMNRK 102 (351)
Q Consensus 78 V~i~syPKSG-TTW~~~il~~i~~~~ 102 (351)
|++.+||-|| ||.-+++...+-...
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhh
Confidence 6889999999 556666666655433
No 23
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=22.23 E-value=1.2e+02 Score=27.70 Aligned_cols=53 Identities=19% Similarity=0.083 Sum_probs=36.6
Q ss_pred CCCCCCCcHHHHHHHHHhhccCCCeEEEEechhhcc-----ChHHHHHHHHHHhCCCCCh
Q 018736 208 GVTPCGPFWDQALGYWKASVEFPNRVLFLKYEDMKT-----EPLLCTKRIAEFLGQPFSL 262 (351)
Q Consensus 208 g~~~~g~~~~h~~~ww~~~~~~~~~vl~v~YEDL~~-----Dp~~~v~~I~~FLg~~~~~ 262 (351)
|....|.-..-+.+|..++ ...--+++|+||.-. .-...+.+-+++||+..++
T Consensus 12 G~lHlG~~~~al~~~l~Ar--~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~ 69 (238)
T cd00807 12 GYLHIGHAKAILLNFGYAK--KYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYK 69 (238)
T ss_pred CcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCC
Confidence 3345555566677887776 334467799999754 3345677778899999884
No 24
>PLN03223 Polycystin cation channel protein; Provisional
Probab=22.07 E-value=1e+02 Score=35.29 Aligned_cols=87 Identities=20% Similarity=0.300 Sum_probs=59.8
Q ss_pred chhhccChHHHHHHHHHHhCCCCChhhhhhHHHHHHHHhcChHHHhhhhhhcCCCCccccccCCcceeecCccCCCcCCC
Q 018736 238 YEDMKTEPLLCTKRIAEFLGQPFSLQEEENGIVQEIVKLCSFENMSNLEVNRNGKSRVRAEVKNDVFFRQGKVGDWKNHL 317 (351)
Q Consensus 238 YEDL~~Dp~~~v~~I~~FLg~~~~~~~~~~~~l~~iv~~~sf~~Mk~~~~~~~~~~~~~~~~~~~~f~RKG~vGdWk~~f 317 (351)
||...+++ ++++..++.+++++. +.+|+++|-.+.-++... ...-...|+|.+|.-|..=
T Consensus 1482 ~~~~~~~~----~~~~~~~~~~~d~~~-----l~~v~~~c~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 1541 (1634)
T PLN03223 1482 EEAFREEK----EKVFTYLNKELDEAG-----LKRVLRRCVIETYQKTDK-----------SKVLLRLRVGNVGKGKKKE 1541 (1634)
T ss_pred chhhhhhh----hhhhhhhhhhhhHHH-----HHHHHHHHHHhhhccCch-----------hHHHHHHhhcccCCCcccc
Confidence 45555554 477788888888877 999999986554432100 0112235788999998777
Q ss_pred cHHHHHHHHHHHHhhcCCCCceeeeec
Q 018736 318 TDEMIERLDQITKHKFDGTGLIVDTWI 344 (351)
Q Consensus 318 t~eq~~~~~~~~~e~l~~~g~~f~~~~ 344 (351)
+.+..+.+++.+.-.|...|-.-+.+.
T Consensus 1542 ~~at~~ei~~aa~~~~~~~g~~p~~~~ 1568 (1634)
T PLN03223 1542 TLATADEIDQAAHMLMDQVGQVPDDED 1568 (1634)
T ss_pred ccccHHHHHHHHHHHHHHhCCCCCCCc
Confidence 888888888888888888887654333
No 25
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=20.90 E-value=79 Score=18.67 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=12.4
Q ss_pred CCCccchHHHHHHHHH
Q 018736 83 NPKSGTTWLKAIVFSI 98 (351)
Q Consensus 83 yPKSGTTW~~~il~~i 98 (351)
+-|||-+|+...+..+
T Consensus 6 myKsGK~Wv~a~~~~~ 21 (29)
T TIGR03715 6 MYKSGKQWVFAAITTL 21 (29)
T ss_pred EEecccHHHHHHHHHH
Confidence 3599999999876554
No 26
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=20.73 E-value=1.1e+02 Score=22.03 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCCChhhhhhHHHHHHHHhcChH
Q 018736 249 TKRIAEFLGQPFSLQEEENGIVQEIVKLCSFE 280 (351)
Q Consensus 249 v~~I~~FLg~~~~~~~~~~~~l~~iv~~~sf~ 280 (351)
+.+|.+.||.+++.++ +.+++++..|+
T Consensus 8 ~~~i~~~lG~~i~~~~-----i~~~L~~lg~~ 34 (70)
T PF03484_consen 8 LDKINKLLGIDISPEE-----IIKILKRLGFK 34 (70)
T ss_dssp HHHHHHHHTS---HHH-----HHHHHHHTT-E
T ss_pred HHHHHHHhCCCCCHHH-----HHHHHHHCCCE
Confidence 3578899999999887 88888776654
No 27
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=20.34 E-value=1.6e+02 Score=26.79 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=36.7
Q ss_pred CCCCCCCcHHHHHHHHHhhccCCCeEEEEechhhcc--C---hHHHHHHHHHHhCCCCCh
Q 018736 208 GVTPCGPFWDQALGYWKASVEFPNRVLFLKYEDMKT--E---PLLCTKRIAEFLGQPFSL 262 (351)
Q Consensus 208 g~~~~g~~~~h~~~ww~~~~~~~~~vl~v~YEDL~~--D---p~~~v~~I~~FLg~~~~~ 262 (351)
|....|.-..-+.+|..++ ...--+++|.||.-. . -...+.+-++.||+.+++
T Consensus 12 G~lHlG~~r~al~n~l~Ar--~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~ 69 (230)
T cd00418 12 GYLHIGHARTALFNFAFAR--KYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDE 69 (230)
T ss_pred CcccHHHHHHHHHHHHHHH--HcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCC
Confidence 3345566666778887777 344567899999743 2 245666667899999886
Done!