BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018737
(351 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
GN=At1g04910 PE=1 SV=1
Length = 519
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 182/377 (48%), Gaps = 31/377 (8%)
Query: 2 RRDFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPP 61
R C+ V A ++NATLVLP+ + ++W++ S F I++ ++FI+ + VK+V ++P
Sbjct: 104 RSAICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPD 163
Query: 62 EISSKEPFHVDCSKRKGQFD-----YVESVLPALLEHKYISLTP---AMSQRRDRYPRFA 113
+ + + + + D Y+ + L A+ EH I LTP +++ D P +
Sbjct: 164 VHKNGKTKKIKAFQIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDN-PEYQ 222
Query: 114 KAALCQACYSALRLTRSLQKKAAELLEAIPKP--FLSLHLRFEPDMVAYSQCEYQGLSPT 171
+ C+ Y ALR + K + +++ + F+S+HLRFE DM+A++ C + +P
Sbjct: 223 RLR-CRVNYHALRFKPHIMKLSESIVDKLRSQGHFMSIHLRFEMDMLAFAGC-FDIFNPE 280
Query: 172 SMQAIEAARGDRKPWTGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGD--- 228
+ + R + + + R GKCPLTP E LIL+A+ +T IYLAAG+
Sbjct: 281 EQKILRKYRKENFADKRLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFG 340
Query: 229 GLMEIEGLTSVYTNVVTKSALRTGEDFTRM-HGNTKAALDYYVSINSDSYMATYFG--NM 285
G ++ +++ + S++ E+ + G +A+DY V + SD +M TY G N
Sbjct: 341 GEQFMKPFRTLFPRLDNHSSVDPSEELSATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNF 400
Query: 286 DKMVAAMRAFKGLYKTLFLSRKAFAEFTYQGLEGKE--LMQALWKVHRDDFLMGR----- 338
+ R + G T+ RKA A +GK +A+ +V G
Sbjct: 401 ANNLLGHRLYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVS 460
Query: 339 -----GSALPDCFCEFE 350
++ P+CFC+
Sbjct: 461 PESFYTNSWPECFCQMN 477
>sp|B3PGJ1|AGAL_CELJU Alpha-galactosidase A OS=Cellvibrio japonicus (strain Ueda107)
GN=agaA PE=1 SV=1
Length = 404
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 67/194 (34%), Gaps = 45/194 (23%)
Query: 156 DMVAYSQCEYQGLSPTSMQAI------EAAR---------GDRKPW--TGEVAHIWRRRG 198
D V Y C+ Q ++P S A +A R GD +PW +V H WR G
Sbjct: 147 DYVKYDWCDTQDINPKSAYATMRDAIHKAGRPMLFSICEWGDNQPWEWAQDVGHSWRTTG 206
Query: 199 KC-------------------PLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSV 239
P+ + L A N + G+G+ E E
Sbjct: 207 DIYPCWNCEHNHGSWSSFGVLPILDKQAGLRKYAGPGHWNDMDMMEVGNGMTEEEDRAHF 266
Query: 240 YTNVVTKSALRTGEDFTRMHGNTKAALDY--YVSINSDSYMATYF-----GNMDKMVAAM 292
S L G D M T+A L + ++IN D G+++ + +
Sbjct: 267 SLWAFMASPLIAGNDLRNMSDTTRAILTHKETIAINQDKLGIQAMKWIDEGDLEIYIKPL 326
Query: 293 RAFKGLYKTLFLSR 306
KG Y LFL+R
Sbjct: 327 E--KGHYAVLFLNR 338
>sp|Q5RID7|SNX17_DANRE Sorting nexin-17 OS=Danio rerio GN=snx17 PE=2 SV=1
Length = 473
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 81 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 139
+Y +V+PA K +LTPA + QRR++ ++ +A + + S +KA +
Sbjct: 49 EYGNNVVPAFPPKKIFTLTPAEVDQRREQLEKYMQAVRQDPILGSSEMFNSFLRKAQQET 108
Query: 140 EAIPKPFLSLHL 151
+ IP + L +
Sbjct: 109 QQIPTEEVQLEI 120
>sp|Q6MEW4|GPMA_PARUW 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
OS=Protochlamydia amoebophila (strain UWE25) GN=gpmA
PE=3 SV=1
Length = 226
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 28/105 (26%)
Query: 164 EYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCPLTPNETALILQALSIP--TNT- 220
E QG++ M K + E HIWRR P E+ + A +IP NT
Sbjct: 117 ELQGINKEEMA---------KKYGAEQVHIWRRSFDVPPPNGESLQMTAARTIPYFENTI 167
Query: 221 --------NIYLAA-GDGL----MEIEGLTSVYTNVVTKSALRTG 252
NI++AA G+ L M+++GLT T+ V K L TG
Sbjct: 168 VPHLKEKKNIFIAAHGNSLRSIIMKLDGLT---TDQVVKLELATG 209
>sp|O74728|YH93_SCHPO Uncharacterized endoplasmic reticulum membrane protein C1709.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1709.03 PE=4 SV=2
Length = 428
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 196 RRGKCPLTPNETALI------LQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 249
R CP + +L+ L +L T+IYL G++ I T VY+ + T +
Sbjct: 117 RISSCPSSNAFASLMCRYERQLDSLDNGKTTDIYLNDIGGVISIHDSTGVYSQITT-TPY 175
Query: 250 RTGEDFTRMHGNTKAALDYYVSINSD 275
++ ED+ ++ G KA++ + +S+ D
Sbjct: 176 KSLEDYEQLFGEDKASM-FDISVKQD 200
>sp|Q5EA77|SNX17_BOVIN Sorting nexin-17 OS=Bos taurus GN=SNX17 PE=2 SV=1
Length = 470
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 81 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 139
+Y +VLPA K SLTPA + QRR++ ++ +A + S ++A +
Sbjct: 50 EYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQET 109
Query: 140 EAIPKPFLSLHL 151
+ +P +SL +
Sbjct: 110 QQVPTEEVSLEV 121
>sp|Q5R4A5|SNX17_PONAB Sorting nexin-17 OS=Pongo abelii GN=SNX17 PE=2 SV=1
Length = 470
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 81 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 139
+Y +VLPA K SLTPA + QRR++ ++ +A + S ++A +
Sbjct: 50 EYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQET 109
Query: 140 EAIPKPFLSLHL 151
+ +P +SL +
Sbjct: 110 QQVPTEEVSLEV 121
>sp|Q15036|SNX17_HUMAN Sorting nexin-17 OS=Homo sapiens GN=SNX17 PE=1 SV=1
Length = 470
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 81 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 139
+Y +VLPA K SLTPA + QRR++ ++ +A + S ++A +
Sbjct: 50 EYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQET 109
Query: 140 EAIPKPFLSLHL 151
+ +P +SL +
Sbjct: 110 QQVPTEEVSLEV 121
>sp|Q6AYS6|SNX17_RAT Sorting nexin-17 OS=Rattus norvegicus GN=Snx17 PE=1 SV=1
Length = 470
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 81 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 139
+Y +VLPA K SLTPA + QRR++ ++ +A + S ++A +
Sbjct: 50 EYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQET 109
Query: 140 EAIPKPFLSLHL 151
+ +P +SL +
Sbjct: 110 QQVPTEEVSLEV 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,068,336
Number of Sequences: 539616
Number of extensions: 4955911
Number of successful extensions: 11256
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 11249
Number of HSP's gapped (non-prelim): 10
length of query: 351
length of database: 191,569,459
effective HSP length: 118
effective length of query: 233
effective length of database: 127,894,771
effective search space: 29799481643
effective search space used: 29799481643
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)