Query 018737
Match_columns 351
No_of_seqs 132 out of 410
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:37:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 1.8E-50 3.9E-55 391.1 -0.8 284 1-300 13-346 (351)
2 KOG3849 GDP-fucose protein O-f 95.1 0.05 1.1E-06 53.3 6.4 148 124-298 209-369 (386)
3 PF05830 NodZ: Nodulation prot 95.0 0.063 1.4E-06 53.2 7.0 234 4-288 19-290 (321)
4 KOG3705 Glycoprotein 6-alpha-L 82.6 5.7 0.00012 41.2 8.2 125 124-284 340-475 (580)
5 PF14771 DUF4476: Domain of un 72.4 1.3 2.8E-05 35.9 0.2 53 201-265 39-91 (95)
6 PF00799 Gemini_AL1: Geminivir 41.8 26 0.00056 30.0 2.9 29 199-228 14-42 (114)
7 PF10892 DUF2688: Protein of u 39.6 21 0.00046 27.2 1.8 16 198-214 42-57 (60)
8 TIGR01354 cyt_deam_tetra cytid 34.2 43 0.00093 28.7 3.1 47 202-249 80-127 (127)
9 PRK05578 cytidine deaminase; V 32.9 42 0.0009 29.3 2.9 42 208-250 90-131 (131)
10 PLN02232 ubiquinone biosynthes 30.4 49 0.0011 28.9 3.0 28 201-228 125-152 (160)
11 smart00874 B5 tRNA synthetase 29.8 53 0.0012 24.6 2.7 24 194-218 12-35 (71)
12 PRK11611 enhanced serine sensi 26.3 67 0.0015 31.1 3.3 74 197-275 100-183 (246)
13 PRK10556 hypothetical protein; 26.0 44 0.00096 28.3 1.7 19 202-220 3-21 (111)
14 PRK15451 tRNA cmo(5)U34 methyl 24.1 1.1E+02 0.0023 28.7 4.2 28 196-223 203-230 (247)
15 KOG3849 GDP-fucose protein O-f 23.0 44 0.00094 33.4 1.3 47 7-57 50-99 (386)
16 PF03484 B5: tRNA synthetase B 22.6 59 0.0013 24.8 1.8 25 194-219 12-36 (70)
17 PF09400 DUF2002: Protein of u 22.5 44 0.00095 28.6 1.1 19 202-220 3-21 (111)
18 PF10365 DUF2436: Domain of un 20.7 29 0.00063 31.2 -0.3 21 24-44 30-50 (161)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=1.8e-50 Score=391.06 Aligned_cols=284 Identities=27% Similarity=0.405 Sum_probs=194.0
Q ss_pred CchhhhHHHHHHHHhcceEEecccccccccCCCCC-----CCCcCcHHHHHHhccCceEEeecCCccccCCCc-------
Q 018737 1 MRRDFCDGVGVAHLLNATLVLPKFEVAAYWNESSD-----FADIFEADYFIQHMDGFVKVVKELPPEISSKEP------- 68 (351)
Q Consensus 1 ~R~~IcdaV~vArlLnATLVlP~l~~~~~w~d~s~-----F~dIfD~dhFI~sL~~dVrIvk~LP~~~~~~~~------- 68 (351)
||+++++||++|++||+|||||.+...+.|++.++ |+++||++||+++++++|.+.+.+|..+.....
T Consensus 13 Qr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~~~~~~~~ 92 (351)
T PF10250_consen 13 QRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFRLQYCWSP 92 (351)
T ss_dssp HHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-EEEESS-
T ss_pred HHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccchhhcccc
Confidence 68999999999999999999999999999999887 999999999999999999999999865543211
Q ss_pred ------------------------ceecccC-CCCccchHHhhhHhhhhc------ceEEEccccccccc-CChhhhhhh
Q 018737 69 ------------------------FHVDCSK-RKGQFDYVESVLPALLEH------KYISLTPAMSQRRD-RYPRFAKAA 116 (351)
Q Consensus 69 ------------------------~~i~~~~-~~s~~~Y~~~vlp~l~k~------~vi~~~~~~~~l~~-~~P~~~q~l 116 (351)
....... +.++.+|+++++|.+.++ +++.|.++...+.+ ..+.++|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~r- 171 (351)
T PF10250_consen 93 WESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYLDRDLQR- 171 (351)
T ss_dssp B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GGGGGGGG-
T ss_pred cccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhcccCccceE-
Confidence 0011111 234557788899999886 99999999888764 47777776
Q ss_pred hHHhhcccccccHHHHHHHHHHHHhcC---CCeeEeeeccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCchhhhh
Q 018737 117 LCQACYSALRLTRSLQKKAAELLEAIP---KPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHI 193 (351)
Q Consensus 117 RCrvnf~ALrF~~~I~~lg~~lv~rl~---~~fiAlHLR~E~Dmla~s~C~~~g~~~~e~~~l~~~R~~~~~w~~~~~~~ 193 (351)
+|+|+++|+++|+++++++. ++|||+|||+|+|| +++|.+ ++ +...|+.+|.. ..+......
T Consensus 172 -------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~-~~---~~~~~~~~~~~--~~~~~~~~~ 236 (351)
T PF10250_consen 172 -------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEF-KG---ERHLLASPRCW--GKKSINPEK 236 (351)
T ss_dssp -------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT--T-------TTTHHHH---GGGTT---
T ss_pred -------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--Hhhccc-CC---chHHHHHhHhh--ccccccchh
Confidence 99999999999999999987 89999999999999 899997 44 55666666642 001112346
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCCCCcEEEEeecC---CcchhhhHHHhccccccccCCCChhhhccccCCcccceeeEE
Q 018737 194 WRRRGKCPLTPNETALILQALSIPTNTNIYLAAGD---GLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYV 270 (351)
Q Consensus 194 ~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~g~---g~~~l~~L~~~fP~~~tKe~L~~~~el~~~~~~~~aAlDy~V 270 (351)
.+..+.||++|++++.+++++|+.+.|.||||+++ |...|++|++.||++++|+++.+.+|++++.++++|+||++|
T Consensus 237 ~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~vD~~i 316 (351)
T PF10250_consen 237 KRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLNDDQLAMVDQEI 316 (351)
T ss_dssp --HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-----S--HHHHHHH
T ss_pred hhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccccchhHHHHHH
Confidence 67889999999999999999999999999999999 678899999999999999999999999999999999999999
Q ss_pred eecCceeeecCCCchHHHHHHHhhhcCCCe
Q 018737 271 SINSDSYMATYFGNMDKMVAAMRAFKGLYK 300 (351)
Q Consensus 271 ~l~SDvFv~t~~gnfa~~v~GhR~y~G~~k 300 (351)
|++||+||+|..++|+.+|+++|.|.|+.+
T Consensus 317 ~~~s~~Figt~~Stfs~~i~~~R~~~g~~~ 346 (351)
T PF10250_consen 317 CSRSDVFIGTCGSTFSSNIARERHYRGKPK 346 (351)
T ss_dssp HHHSSEEEE-TT-HHHHHHHHHHHHSSSS-
T ss_pred HhcCCEEEecCcchhHHHhhcccCcCCCCC
Confidence 999999999998899999999999999663
No 2
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.05 Score=53.33 Aligned_cols=148 Identities=16% Similarity=0.273 Sum_probs=84.8
Q ss_pred cccccHHHHHHHHHHHHh-cCCCeeEeeeccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCchh--hhhhhc----
Q 018737 124 ALRLTRSLQKKAAELLEA-IPKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEV--AHIWRR---- 196 (351)
Q Consensus 124 ALrF~~~I~~lg~~lv~r-l~~~fiAlHLR~E~Dmla~s~C~~~g~~~~e~~~l~~~R~~~~~w~~~~--~~~~R~---- 196 (351)
-|+.+.+|.+-|++.+.. |.+||+++|||...||+-- |.+-.-+. ..+.-... -...+.
T Consensus 209 Yl~WS~r~~e~~k~fI~a~L~rpfvgiHLRng~DWvra--Cehikd~~------------~~hlfASpQClGy~~~~gaL 274 (386)
T KOG3849|consen 209 YLRWSSRITEQAKKFISANLARPFVGIHLRNGADWVRA--CEHIKDTT------------NRHLFASPQCLGYGHHLGAL 274 (386)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcceeEEEeecCchHHHH--HHHhcccC------------CCccccChhhcccccccccc
Confidence 378999999999996654 7789999999999999863 65311100 00000000 000011
Q ss_pred -CCCCCCCHHHHH----HHHHHcCCCCCcEEEEeecCCcchhhhHH-HhccccccccCCCChhhhccccCCcccceeeEE
Q 018737 197 -RGKCPLTPNETA----LILQALSIPTNTNIYLAAGDGLMEIEGLT-SVYTNVVTKSALRTGEDFTRMHGNTKAALDYYV 270 (351)
Q Consensus 197 -~G~CPLtPeEvg----l~L~alGf~~~T~IYlA~g~g~~~l~~L~-~~fP~~~tKe~L~~~~el~~~~~~~~aAlDy~V 270 (351)
...|-=.-+|+- +-.+.+| .-..+|+|+-.. .-+.-|. +++|-=+.-..| . .--+-+|..|
T Consensus 275 t~e~C~Psk~~I~rqik~~v~si~--dakSVfVAsDs~-hmi~Eln~aL~~~~i~vh~l-~---------pdd~y~dLaI 341 (386)
T KOG3849|consen 275 TKEICSPSKQQILRQIKEKVGSIG--DAKSVFVASDSD-HMIDELNEALKPYEIEVHRL-E---------PDDMYTDLAI 341 (386)
T ss_pred chhhhCccHHHHHHHHHHHHhhhc--ccceEEEeccch-hhhHHHHHhhcccceeEEec-C---------cccchhhhhh
Confidence 123422233332 2222333 233589988662 1122222 222211111111 1 1224589999
Q ss_pred eecCceeeecCCCchHHHHHHHhhhcCC
Q 018737 271 SINSDSYMATYFGNMDKMVAAMRAFKGL 298 (351)
Q Consensus 271 ~l~SDvFv~t~~gnfa~~v~GhR~y~G~ 298 (351)
.-+||.||++--++|+..|.-.|-..|+
T Consensus 342 lGqadhFiGNCvSsfsafvKRERD~~Gr 369 (386)
T KOG3849|consen 342 LGQADHFIGNCVSSFSAFVKRERDHAGR 369 (386)
T ss_pred hcccchhhhhhHHHHHHHHhhhhcccCC
Confidence 9999999999999999999999988883
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=95.05 E-value=0.063 Score=53.20 Aligned_cols=234 Identities=16% Similarity=0.245 Sum_probs=108.7
Q ss_pred hhhHHHHHHHHhcceEEecccccccccCCC----CCCCCcCcHHHHHHhcc--CceEEeec-CCccccCCCcceecccCC
Q 018737 4 DFCDGVGVAHLLNATLVLPKFEVAAYWNES----SDFADIFEADYFIQHMD--GFVKVVKE-LPPEISSKEPFHVDCSKR 76 (351)
Q Consensus 4 ~IcdaV~vArlLnATLVlP~l~~~~~w~d~----s~F~dIfD~dhFI~sL~--~dVrIvk~-LP~~~~~~~~~~i~~~~~ 76 (351)
+++-|-.+|+-.|.||||= |+++ -.|...|++ |-+-.+ ..|+|.-. -=.+++..-|+- |+|
T Consensus 19 ~la~aw~~a~~~~r~l~id-------w~~s~~~~~~f~n~f~~--ffepv~~i~~~~~~~~d~i~~~~~~g~~f---p~~ 86 (321)
T PF05830_consen 19 SLAAAWRYAKRTGRTLVID-------WRGSCYLDQPFTNAFPV--FFEPVEDIAGVRVICDDRINQFSFPGPFF---PAW 86 (321)
T ss_dssp HHHHHHHHHHHHT-EEEEE--------BT-TT-SSTTSBSHHH--HB---SEETTEEEE-SGGGGT----SSEE---SGG
T ss_pred HHHHHHHHHHHhCCeEEEE-------cCCceecCCcccccCCc--ccchhhhhcCceeEecchhhhhcCCCCcC---hhH
Confidence 4677889999999999983 6654 356555543 555554 45665522 111111111111 222
Q ss_pred C-C--------ccchH---HhhhHhhhh-------cceEEEcccccccccCChhhhhhhhHHhhcccccccHHHHHHHHH
Q 018737 77 K-G--------QFDYV---ESVLPALLE-------HKYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAE 137 (351)
Q Consensus 77 ~-s--------~~~Y~---~~vlp~l~k-------~~vi~~~~~~~~l~~~~P~~~q~lRCrvnf~ALrF~~~I~~lg~~ 137 (351)
| . |..|+ .+-|..|.. +-||+-.=.+ +=-+-+..| .-|..|+-+++|++..+.
T Consensus 87 w~~p~~~~~~~pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~------~~c~~~aeR--~if~slkpR~eIqarID~ 158 (321)
T PF05830_consen 87 WNKPSIDCVYRPDEQIFRERDELRQLFQSQEDHEANTVVCDACLM------WRCDEEAER--EIFSSLKPRPEIQARIDA 158 (321)
T ss_dssp GGS-GGGGS---HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--T------TSS-HHHHH--HHHHHS-B-HHHHHHHHH
T ss_pred HhCCCcceecCChHHHhhhhHHHHHHhhcccccccchhhhHhhcC------CcchhHHHH--HHHHhCCCCHHHHHHHHH
Confidence 2 1 11222 222333322 3344432221 112223334 458999999999999999
Q ss_pred HHHhc-CC-CeeEeeeccc--hhhhhhcccccCCCChhHHHHHHHHhcCCCCCCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 018737 138 LLEAI-PK-PFLSLHLRFE--PDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCPLTPNETALILQA 213 (351)
Q Consensus 138 lv~rl-~~-~fiAlHLR~E--~Dmla~s~C~~~g~~~~e~~~l~~~R~~~~~w~~~~~~~~R~~G~CPLtPeEvgl~L~a 213 (351)
+-+.- .| +-|++|-|.- +|.+.+ +|.+ .++...|.+. ......+++
T Consensus 159 iy~ehf~g~~~IGVHVRhGngeD~~~h-~~~~----~D~e~~L~~V-------------------------~~ai~~ak~ 208 (321)
T PF05830_consen 159 IYREHFAGYSVIGVHVRHGNGEDIMDH-APYW----ADEERALRQV-------------------------CTAIDKAKA 208 (321)
T ss_dssp HHHHHTTTSEEEEEEE--------------------HHHHHHHHHH-------------------------HHHHHHHHT
T ss_pred HHHHHcCCCceEEEEEeccCCcchhcc-Cccc----cCchHHHHHH-------------------------HHHHHHHHh
Confidence 87764 44 4899999942 233332 2221 1111111111 011122344
Q ss_pred cCCCCCcEEEEeecCCcchhhhHHHhccccccccCCCChhhhccccC-------CcccceeeEEeecCceee-ecCCCch
Q 018737 214 LSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHG-------NTKAALDYYVSINSDSYM-ATYFGNM 285 (351)
Q Consensus 214 lGf~~~T~IYlA~g~g~~~l~~L~~~fP~~~tKe~L~~~~el~~~~~-------~~~aAlDy~V~l~SDvFv-~t~~gnf 285 (351)
.-...++.|+||+=. ...++-+++.||.+++-++=..+..-.++|+ -..|-+|.+...++|+-| .+-.+.|
T Consensus 209 ~~~~k~~~IFLATDS-aeVid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~F 287 (321)
T PF05830_consen 209 LAPPKPVRIFLATDS-AEVIDQFRKKFPDIITIPKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAF 287 (321)
T ss_dssp S--SS-EEEEEEES--HHHHHHHHHHSTTEE----------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GG
T ss_pred ccCCCCeeEEEecCc-HHHHHHHHHHCCCeEEcccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchh
Confidence 555668899999877 3677889999999877655443222223333 245889999999999999 5666666
Q ss_pred HHH
Q 018737 286 DKM 288 (351)
Q Consensus 286 a~~ 288 (351)
+..
T Consensus 288 sr~ 290 (321)
T PF05830_consen 288 SRY 290 (321)
T ss_dssp GHH
T ss_pred hhH
Confidence 654
No 4
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.63 E-value=5.7 Score=41.21 Aligned_cols=125 Identities=20% Similarity=0.308 Sum_probs=79.0
Q ss_pred cccccHHHHHHHHHHHHhcC--CCeeEeeeccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCchhhhhhhcCCCCC
Q 018737 124 ALRLTRSLQKKAAELLEAIP--KPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCP 201 (351)
Q Consensus 124 ALrF~~~I~~lg~~lv~rl~--~~fiAlHLR~E~Dmla~s~C~~~g~~~~e~~~l~~~R~~~~~w~~~~~~~~R~~G~CP 201 (351)
-+||+|-.++.-++-.+.|. .|-|++|.|-. |=+. +.+.--.|+.+=. |-
T Consensus 340 L~Rpqp~t~~~l~~a~k~lg~~~PivGvhvRRT-DKVG---------TEAAfH~~eEYM~----~v-------------- 391 (580)
T KOG3705|consen 340 LMRPQPATQEKLDKALKSLGLDKPIVGVHVRRT-DKVG---------TEAAFHALEEYME----WV-------------- 391 (580)
T ss_pred HhCCChhhHHHHHHHHHhCCCCCceeeEEEEec-cccc---------chhhhhhHHHHHH----HH--------------
Confidence 57899999998888888875 79999999975 3211 1111112222211 21
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEeecCCcchhhhHHHhccccccccCCCChhhhccc------c---CCcccceeeEEee
Q 018737 202 LTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRM------H---GNTKAALDYYVSI 272 (351)
Q Consensus 202 LtPeEvgl~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fP~~~tKe~L~~~~el~~~------~---~~~~aAlDy~V~l 272 (351)
|+--.+|..=|=+-.-+||||+-+. ..+.--+.-|||. .+.+..|.+.. + +...--+|..+.+
T Consensus 392 ---E~~f~~le~rg~~~~rRiflAsDDp-~vv~EAk~kYPnY----e~igd~eia~~A~l~nRYTd~sL~GvIlDIh~LS 463 (580)
T KOG3705|consen 392 ---EIWFKVLEKRGKPLERRIFLASDDP-TVVPEAKNKYPNY----EVIGDTEIAKTAQLNNRYTDASLMGVILDIHILS 463 (580)
T ss_pred ---HHHHHHHHHhCCchhheEEEecCCc-hhchHhhccCCCc----EEeccHHHHHHhhccccchhhhhhheeeeeeeec
Confidence 1222333333555567899999884 4455567789998 56666666432 1 2334567888889
Q ss_pred cCceeeecCCCc
Q 018737 273 NSDSYMATYFGN 284 (351)
Q Consensus 273 ~SDvFv~t~~gn 284 (351)
.+|..|.|+++-
T Consensus 464 ~~d~LVCTFSSQ 475 (580)
T KOG3705|consen 464 KVDYLVCTFSSQ 475 (580)
T ss_pred ccceEEEechHH
Confidence 999988887764
No 5
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=72.39 E-value=1.3 Score=35.90 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEeecCCcchhhhHHHhccccccccCCCChhhhccccCCcccc
Q 018737 201 PLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAA 265 (351)
Q Consensus 201 PLtPeEvgl~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fP~~~tKe~L~~~~el~~~~~~~~aA 265 (351)
++|-.+++-+|+...|++ .+|+.++.++|++++++.--+-.+.-.|.+++..|
T Consensus 39 ~~T~~Qv~~il~~f~fd~------------~kl~~lk~l~p~i~D~~n~~~i~~~f~f~s~k~~~ 91 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFDN------------DKLKALKLLYPYIVDPQNYYTIIDAFSFSSDKDKA 91 (95)
T ss_pred ceeHHHHHHHHHHcCCCH------------HHHHHHHHHhhhccCHHHHHHHHHHhcCcccHHHH
Confidence 499999999999999987 68999999999999997433322223344444443
No 6
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=41.85 E-value=26 Score=30.04 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEeecC
Q 018737 199 KCPLTPNETALILQALSIPTNTNIYLAAGD 228 (351)
Q Consensus 199 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g~ 228 (351)
.|||+|||+...|+++--+ ....||..+.
T Consensus 14 qC~l~ke~~l~~L~~l~~~-~~~~yI~v~r 42 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTP-SNKKYIRVCR 42 (114)
T ss_dssp T----HHHHHHHHHH---S-S-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc-cCceEEEeec
Confidence 6999999999999999754 4677876654
No 7
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=39.61 E-value=21 Score=27.24 Aligned_cols=16 Identities=50% Similarity=0.904 Sum_probs=13.6
Q ss_pred CCCCCCHHHHHHHHHHc
Q 018737 198 GKCPLTPNETALILQAL 214 (351)
Q Consensus 198 G~CPLtPeEvgl~L~al 214 (351)
|-| +||||-+.+++++
T Consensus 42 ~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 42 GDC-ITPEEDREILEAT 57 (60)
T ss_pred hcc-CCHHHHHHHHHHH
Confidence 557 9999999999875
No 8
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=34.19 E-value=43 Score=28.74 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=35.8
Q ss_pred CCHHHH-HHHHHHcCCCCCcEEEEeecCCcchhhhHHHhccccccccCC
Q 018737 202 LTPNET-ALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 249 (351)
Q Consensus 202 LtPeEv-gl~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fP~~~tKe~L 249 (351)
++|--+ -.+|..++ +.++.|++...+|.....+|+++.|.-+.+++|
T Consensus 80 ~sPCG~Crq~l~e~~-~~~~~v~~~~~~~~~~~~~l~eLLP~~f~~~~l 127 (127)
T TIGR01354 80 VSPCGACRQVLAEFA-GPDTPIYMTNNDGTYKVYTVGELLPFGFGPSDL 127 (127)
T ss_pred cCccHHHHHHHHHhC-CCCcEEEEECCCCCEEEEEHHHhCcCcCCcCcC
Confidence 445443 55788887 568999999988876667899999988877654
No 9
>PRK05578 cytidine deaminase; Validated
Probab=32.91 E-value=42 Score=29.26 Aligned_cols=42 Identities=19% Similarity=0.167 Sum_probs=33.1
Q ss_pred HHHHHHcCCCCCcEEEEeecCCcchhhhHHHhccccccccCCC
Q 018737 208 ALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALR 250 (351)
Q Consensus 208 gl~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fP~~~tKe~L~ 250 (351)
-.+|..++ +.++.||+...++.....+|+++.|.-+++++|.
T Consensus 90 RQ~l~e~~-~~~~~v~l~~~~~~~~~~~l~eLLP~~f~~~~l~ 131 (131)
T PRK05578 90 RQVLAEFG-GPDLLVTLVAKDGPTGEMTLGELLPYAFTPDDLG 131 (131)
T ss_pred HHHHHHhC-CCCcEEEEEcCCCCEEEEEHHHhCcCcCChhhcC
Confidence 34566664 5789999999887666688999999999888763
No 10
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=30.44 E-value=49 Score=28.94 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEeecC
Q 018737 201 PLTPNETALILQALSIPTNTNIYLAAGD 228 (351)
Q Consensus 201 PLtPeEvgl~L~alGf~~~T~IYlA~g~ 228 (351)
+++|+|...+|+..||.+-+.-+++.|-
T Consensus 125 f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 125 YLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred CcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 4899999999999999998888877764
No 11
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=29.79 E-value=53 Score=24.64 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.1
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCCC
Q 018737 194 WRRRGKCPLTPNETALILQALSIPT 218 (351)
Q Consensus 194 ~R~~G~CPLtPeEvgl~L~alGf~~ 218 (351)
.+..|. .++++|+..+|+.|||..
T Consensus 12 ~~llG~-~i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 12 NRLLGL-DLSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHHCC-CCCHHHHHHHHHHCCCeE
Confidence 355675 599999999999999975
No 12
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=26.29 E-value=67 Score=31.12 Aligned_cols=74 Identities=22% Similarity=0.369 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEeecC----C------cchhhhHHHhccccccccCCCChhhhccccCCcccce
Q 018737 197 RGKCPLTPNETALILQALSIPTNTNIYLAAGD----G------LMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAAL 266 (351)
Q Consensus 197 ~G~CPLtPeEvgl~L~alGf~~~T~IYlA~g~----g------~~~l~~L~~~fP~~~tKe~L~~~~el~~~~~~~~aAl 266 (351)
-|++ ++|+||..+|..-|....+...|-.|. | ..-++.|++.|.+- .-.-..=|...+...-...
T Consensus 100 ~gk~-f~p~EI~~LL~~~~~~~~~~~~i~~g~~v~lg~p~~~P~~lv~~L~~lf~~~----k~V~rAyL~~~~~~~d~~p 174 (246)
T PRK11611 100 TGKE-FMPREISLLLGEEGNPLSSQEVLEGGESLLLSEVAEPPAQMIDSLTTLFKTI----KPVKRAFLASIKENADAQP 174 (246)
T ss_pred CCcc-cCHHHHHHHHhccCCCcceeEEeCCCCEEEecCCccchHHHHHHHHHHHhhc----chHHHHHHHHHhccCCCCC
Confidence 4777 999999999999999999988888777 3 22344566655432 1111111223332224555
Q ss_pred eeEEeecCc
Q 018737 267 DYYVSINSD 275 (351)
Q Consensus 267 Dy~V~l~SD 275 (351)
.++|+++.|
T Consensus 175 ~LLI~le~~ 183 (246)
T PRK11611 175 NLLIGIEAD 183 (246)
T ss_pred ceEEEEecC
Confidence 688888874
No 13
>PRK10556 hypothetical protein; Provisional
Probab=25.98 E-value=44 Score=28.31 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHcCCCCCc
Q 018737 202 LTPNETALILQALSIPTNT 220 (351)
Q Consensus 202 LtPeEvgl~L~alGf~~~T 220 (351)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLe~aGF~~D~ 21 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDV 21 (111)
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999997654
No 14
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=24.12 E-value=1.1e+02 Score=28.74 Aligned_cols=28 Identities=4% Similarity=-0.091 Sum_probs=22.6
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 018737 196 RRGKCPLTPNETALILQALSIPTNTNIY 223 (351)
Q Consensus 196 ~~G~CPLtPeEvgl~L~alGf~~~T~IY 223 (351)
.+-..|+|++|...+|+..||..-..+|
T Consensus 203 ~~~~~~~~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 203 ENVMLTDSVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred HhhcccCCHHHHHHHHHHcCchhHHHHH
Confidence 3456789999999999999998755444
No 15
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.03 E-value=44 Score=33.39 Aligned_cols=47 Identities=26% Similarity=0.387 Sum_probs=29.4
Q ss_pred HHHHHHHHhcceEEeccc---ccccccCCCCCCCCcCcHHHHHHhccCceEEee
Q 018737 7 DGVGVAHLLNATLVLPKF---EVAAYWNESSDFADIFEADYFIQHMDGFVKVVK 57 (351)
Q Consensus 7 daV~vArlLnATLVlP~l---~~~~~w~d~s~F~dIfD~dhFI~sL~~dVrIvk 57 (351)
-..|.|+.||.|||+|-. ++-.+-+---.|+..|.++ .|+..-|||.
T Consensus 50 GsLAFAKaLnRTL~lPpwiEy~~pe~~n~~vpf~~yF~ve----pl~~YhRVit 99 (386)
T KOG3849|consen 50 GSLAFAKALNRTLVLPPWIEYKHPETKNLMVPFEFYFQVE----PLAKYHRVIT 99 (386)
T ss_pred HHHHHHHHhcccccCCcchhccCCcccccccchhheeecc----cHhhhhhhee
Confidence 356899999999999854 2222222234677788765 3444445554
No 16
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=22.62 E-value=59 Score=24.84 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=17.0
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCCCC
Q 018737 194 WRRRGKCPLTPNETALILQALSIPTN 219 (351)
Q Consensus 194 ~R~~G~CPLtPeEvgl~L~alGf~~~ 219 (351)
.+..|. .++++|+..+|+.|||.-.
T Consensus 12 ~~~lG~-~i~~~~i~~~L~~lg~~~~ 36 (70)
T PF03484_consen 12 NKLLGI-DISPEEIIKILKRLGFKVE 36 (70)
T ss_dssp HHHHTS----HHHHHHHHHHTT-EEE
T ss_pred HHHhCC-CCCHHHHHHHHHHCCCEEE
Confidence 355676 4999999999999999743
No 17
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=22.46 E-value=44 Score=28.57 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHcCCCCCc
Q 018737 202 LTPNETALILQALSIPTNT 220 (351)
Q Consensus 202 LtPeEvgl~L~alGf~~~T 220 (351)
|-|.||+.+|...||..+.
T Consensus 3 lrpdeva~vle~~gf~~d~ 21 (111)
T PF09400_consen 3 LRPDEVARVLEKAGFERDY 21 (111)
T ss_dssp --HHHHHHHHHHTT-EEEE
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999997653
No 18
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=20.72 E-value=29 Score=31.20 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=18.6
Q ss_pred cccccccCCCCCCCCcCcHHH
Q 018737 24 FEVAAYWNESSDFADIFEADY 44 (351)
Q Consensus 24 l~~~~~w~d~s~F~dIfD~dh 44 (351)
|..+.+|+|.|.|.-++|.||
T Consensus 30 Leah~vW~DgsGyQ~LlDaDH 50 (161)
T PF10365_consen 30 LEAHNVWGDGSGYQMLLDADH 50 (161)
T ss_pred EeccccccCCcceEEEEcCCc
Confidence 456679999999999999999
Done!