Query 018737
Match_columns 351
No_of_seqs 132 out of 410
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:17:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.4 1.2E-12 4.2E-17 129.5 11.8 166 123-300 217-383 (408)
2 3zy2_A Putative GDP-fucose pro 98.8 7.4E-09 2.5E-13 101.6 9.1 145 123-297 189-348 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 96.5 0.014 4.8E-07 60.0 11.4 142 124-297 273-421 (526)
4 2hhc_A NODZ, nodulation fucosy 94.6 0.085 2.9E-06 49.9 8.0 139 120-290 143-294 (330)
5 1p3q_Q VPS9P, vacuolar protein 47.4 2.6 8.8E-05 30.7 -1.0 38 231-271 14-51 (54)
6 1wgl_A TOLL-interacting protei 44.0 1.4 4.8E-05 32.4 -2.9 48 230-280 10-57 (59)
7 3zy2_A Putative GDP-fucose pro 41.9 11 0.00037 37.1 2.1 47 6-56 28-75 (362)
8 1l2m_A REP protein; A+B fold, 27.7 39 0.0014 28.0 3.0 29 199-228 17-45 (118)
9 2fr5_A Cytidine deaminase; tet 27.1 39 0.0013 28.7 3.0 98 147-249 38-142 (146)
10 2dhy_A CUE domain-containing p 25.4 5.7 0.0002 29.9 -2.3 38 230-270 19-56 (67)
11 2g7j_A Putative cytoplasmic pr 22.8 32 0.0011 28.5 1.5 19 202-220 3-21 (124)
12 2d30_A Cytidine deaminase; pur 20.7 58 0.002 27.5 2.8 99 146-249 34-139 (141)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.39 E-value=1.2e-12 Score=129.50 Aligned_cols=166 Identities=14% Similarity=0.145 Sum_probs=109.1
Q ss_pred ccccccHHHHHHHHHHHHh-cCCCeeEeeeccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCchhhhhhhcCCCCC
Q 018737 123 SALRLTRSLQKKAAELLEA-IPKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCP 201 (351)
Q Consensus 123 ~ALrF~~~I~~lg~~lv~r-l~~~fiAlHLR~E~Dmla~s~C~~~g~~~~e~~~l~~~R~~~~~w~~~~~~~~R~~G~CP 201 (351)
..|+|.+.|.+.|++.++. |.++|+++|+|...|+... |...+- +. ..-....+|...+-. .-....+|
T Consensus 217 r~l~~s~~l~~~a~~fi~~~L~~~~~~~h~r~~~dw~~~--~~~~~~--~~-----~~~y~~~H~Rr~d~~-~~~~~~~p 286 (408)
T 4ap5_A 217 RSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKM--KVKLGS--AL-----GGPYLGVHLRRKDFI-WGHRQDVP 286 (408)
T ss_dssp HTCCBCHHHHHHHHHHHHHHHCCCTTTTTCCCCSSGGGC--CCCTTC--BC-----CEEEEEEEECCTTTT-TTTCSSSC
T ss_pred HHhhhhHHHHHHHHHHHHHHhCcccceeecccchhHhhh--hccccc--cc-----CCCccccccccccch-hhhhccCC
Confidence 4799999999999998775 6789999999999888763 331110 00 000001112211100 01122344
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEeecCCcchhhhHHHhccccccccCCCChhhhccccCCcccceeeEEeecCceeeecC
Q 018737 202 LTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATY 281 (351)
Q Consensus 202 LtPeEvgl~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fP~~~tKe~L~~~~el~~~~~~~~aAlDy~V~l~SDvFv~t~ 281 (351)
-.++-+..+.+.+.=.+.+.||||+-+.+..+.-|++.+|.++.-.. ..+++..+...+.|.||-+||.+|++||+|.
T Consensus 287 s~~~~~~~i~~~~~~~~~~~VyiATD~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~d~~~a~idq~Ic~~a~~FiGt~ 364 (408)
T 4ap5_A 287 SLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEP--TWEELELYKDGGVAIIDQWICAHARFFIGTS 364 (408)
T ss_dssp CHHHHHHHHHHHHHHHTCSCEEEEECCCHHHHHHHHHHCTTEECCCC--CHHHHHHHHHHHHHHHHHHHHHTEEEEEBCT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHhCCCcEEecC--cchhhhccCcchhhHHHHHHHHhCCeeEeCC
Confidence 44333333433333234567999987655667789999988754322 2345555556678999999999999999999
Q ss_pred CCchHHHHHHHhhhcCCCe
Q 018737 282 FGNMDKMVAAMRAFKGLYK 300 (351)
Q Consensus 282 ~gnfa~~v~GhR~y~G~~k 300 (351)
.++|+..|.-.|.+.|+..
T Consensus 365 ~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 365 VSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp TCHHHHHHHHHHHHHTBCG
T ss_pred cCchhHHHHHHHHhcCCCC
Confidence 9999999999999999763
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.83 E-value=7.4e-09 Score=101.57 Aligned_cols=145 Identities=17% Similarity=0.293 Sum_probs=96.5
Q ss_pred ccccccHHHHHHHHHHHHh-cCCCeeEeeeccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCchhhh---hhhcCC
Q 018737 123 SALRLTRSLQKKAAELLEA-IPKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAH---IWRRRG 198 (351)
Q Consensus 123 ~ALrF~~~I~~lg~~lv~r-l~~~fiAlHLR~E~Dmla~s~C~~~g~~~~e~~~l~~~R~~~~~w~~~~~~---~~R~~G 198 (351)
+-|+++++|.+.|++.++. |.+||||+|||--.|+.-. |.+-..+. .. ..-. .+. -....|
T Consensus 189 kYm~WS~~i~~~a~~fI~~~L~rpyVgIHLR~G~DW~~a--C~hlk~~~--------~~----~lfa-SPQC~Gy~~~~~ 253 (362)
T 3zy2_A 189 KYLRWSSRITEQAKKFISANLAKPFVAVHLRNDADWVRV--CEHIDTTT--------NR----PLFA-SEQCLGEGHHLG 253 (362)
T ss_dssp GGCCBCHHHHHHHHHHHHHHCCSSEEEEEECCCHHHHHH--HHTCCTTT--------CC----CCTT-THHHHCGGGTTC
T ss_pred HhccccHHHHHHHHHHHHHhcCCCeEEEEEecCCcHHHH--Hhhhcccc--------Cc----cccc-CCcccCCcccCc
Confidence 4589999999999998887 8899999999999999865 76311100 00 0000 000 001112
Q ss_pred CCCCC-------HHH----HHHHHHHcCCCCCcEEEEeecCCcchhhhHHHhccccccccCCCChhhhccccCCccccee
Q 018737 199 KCPLT-------PNE----TALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALD 267 (351)
Q Consensus 199 ~CPLt-------PeE----vgl~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fP~~~tKe~L~~~~el~~~~~~~~aAlD 267 (351)
||| -++ +...++.++ -..||||+-. ...++-|++.|+..-. .+.+ +.. -.|+||
T Consensus 254 --~lt~emClPSle~I~rqIk~~vk~~~---lksVFIATDa-~~~~~ELk~~L~~~~v--~vv~------~~p-e~a~ID 318 (362)
T 3zy2_A 254 --TLTKEICSPSKQQILEQIVEKVGSIG---AKSVFVASDK-DHMIDEINEALKPYEI--EAHR------QEP-DDMYTS 318 (362)
T ss_dssp --CCCHHHHSCCHHHHHHHHHHHHHHHT---CSEEEEEESS-CCCHHHHHHHHGGGTC--CEEC------CSS-CCHHHH
T ss_pred --ccchhccCCCHHHHHHHHHHHHHhcC---CcEEEEecCC-HHHHHHHHHHhhccCc--eEEE------eCC-chhHHH
Confidence 343 222 444555554 5679999954 3457778888864210 0100 111 178999
Q ss_pred eEEeecCceeeecCCCchHHHHHHHhhhcC
Q 018737 268 YYVSINSDSYMATYFGNMDKMVAAMRAFKG 297 (351)
Q Consensus 268 y~V~l~SDvFv~t~~gnfa~~v~GhR~y~G 297 (351)
.+||.+||+||+|..++|+..|.-.|--.|
T Consensus 319 ~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 319 LAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp HHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred HHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 999999999999999999999999999988
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=96.51 E-value=0.014 Score=60.01 Aligned_cols=142 Identities=16% Similarity=0.229 Sum_probs=87.4
Q ss_pred cccccHHHHHHHHHHHHhc--CCCeeEeeeccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCchhhhhhhcCCCCC
Q 018737 124 ALRLTRSLQKKAAELLEAI--PKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCP 201 (351)
Q Consensus 124 ALrF~~~I~~lg~~lv~rl--~~~fiAlHLR~E~Dmla~s~C~~~g~~~~e~~~l~~~R~~~~~w~~~~~~~~R~~G~CP 201 (351)
-+|++++|++..+++.+.+ .+|.|++|.|-- |-..... .++.. .+..+.++
T Consensus 273 l~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrG-Dk~~~E~-~~~~~-~~Y~~~v~------------------------ 325 (526)
T 2de0_X 273 LIRPQPWLEKEIEEATKKLGFKHPVIGVHVRRT-DKVGTEA-AFHPI-EEYMVHVE------------------------ 325 (526)
T ss_dssp HTCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC------CC-CSCSH-HHHHHHHH------------------------
T ss_pred HcCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCC-CCCcccc-ccCCH-HHHHHHHH------------------------
Confidence 4899999999999999886 689999999975 4322100 11111 11111110
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEeecCCcchhhhHHHhcccc--ccccCCCChhhhcc-c--cCCcccceeeEEeecCce
Q 018737 202 LTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNV--VTKSALRTGEDFTR-M--HGNTKAALDYYVSINSDS 276 (351)
Q Consensus 202 LtPeEvgl~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fP~~--~tKe~L~~~~el~~-~--~~~~~aAlDy~V~l~SDv 276 (351)
+.-..|+.......+.||||+-+ ....+-+++.||+. ++-........+.. . .+...+.+|.++.+++|+
T Consensus 326 ----~~~~~l~~~~~~~~~~ifLATDD-p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~ 400 (526)
T 2de0_X 326 ----EHFQLLARRMQVDKKRVYLATDD-PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADF 400 (526)
T ss_dssp ----HHHHHHHTTSCCSSCEEEEEESC-HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSE
T ss_pred ----HHHHHHHhhcCCCCCeEEEEcCC-HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCe
Confidence 11112333346778899999876 34566778889985 32222211111111 1 112457899999999999
Q ss_pred eeecCCCchHHHHHHHhhhcC
Q 018737 277 YMATYFGNMDKMVAAMRAFKG 297 (351)
Q Consensus 277 Fv~t~~gnfa~~v~GhR~y~G 297 (351)
||+|.++||+.++...|.-.+
T Consensus 401 ~Vgt~sS~~srla~~l~~~~~ 421 (526)
T 2de0_X 401 LVCTFSSQVCRVAYEIMQTLH 421 (526)
T ss_dssp EEECTTSHHHHHHHHHHTTSS
T ss_pred eecCCCCHHHHHHHHHhcCcC
Confidence 999999999999888775443
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=94.59 E-value=0.085 Score=49.90 Aligned_cols=139 Identities=9% Similarity=0.264 Sum_probs=77.4
Q ss_pred hhcccccccHHHHHHHHHHHHh-cC-CCeeEeeeccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCchhhhhhhcC
Q 018737 120 ACYSALRLTRSLQKKAAELLEA-IP-KPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRR 197 (351)
Q Consensus 120 vnf~ALrF~~~I~~lg~~lv~r-l~-~~fiAlHLR~E~Dmla~s~C~~~g~~~~e~~~l~~~R~~~~~w~~~~~~~~R~~ 197 (351)
.-|.-|+++++|++..+++.+. +. .++||+|.|.-.+.- .|.. +. .|.+.
T Consensus 143 ~i~~yl~p~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~~---~~~~-~~----------------~~~~~-------- 194 (330)
T 2hhc_A 143 LIFRNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHGNGED---IMEH-AP----------------YWADS-------- 194 (330)
T ss_dssp HHHHHSCBCHHHHHHHHHHHHHHTTTSEEEEEEECC--------------------------------CHHH--------
T ss_pred HHHhcCCccHHHHHHHHHHHHHhccCCceEEEEEecCCCCc---cccc-Cc----------------chHHH--------
Confidence 3457789999999999998865 45 599999999753311 2321 10 01000
Q ss_pred CCCCCCHHHHHHHHHHc-C-CC-CCcEEEEeecCCcchhhhHHHhcccccccc-CCCCh--hhhc----cccCCccccee
Q 018737 198 GKCPLTPNETALILQAL-S-IP-TNTNIYLAAGDGLMEIEGLTSVYTNVVTKS-ALRTG--EDFT----RMHGNTKAALD 267 (351)
Q Consensus 198 G~CPLtPeEvgl~L~al-G-f~-~~T~IYlA~g~g~~~l~~L~~~fP~~~tKe-~L~~~--~el~----~~~~~~~aAlD 267 (351)
.|| -++.-.-++.+ . .+ .+..||||+-+- ..++-|++.||++.+-. .+... ..+. ...+.+.+.+|
T Consensus 195 -~~~--l~~~~~~i~~~~~~~~~~~~~vfvaSDd~-~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~D 270 (330)
T 2hhc_A 195 -ELA--LHQVCMAIRKAKALSYPKPVKVFLCTDSA-QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALID 270 (330)
T ss_dssp -HHH--HHHHHHHHHHHHTSCCSSCEEEEEEESCH-HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHH
T ss_pred -hHH--HHHHHHHHHHHHhccCcCceEEEEEeCCH-HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHH
Confidence 011 01111111111 1 12 457899998774 45678999999853321 11110 0000 01124568899
Q ss_pred eEEeecCceee-ecCCCchHHHHH
Q 018737 268 YYVSINSDSYM-ATYFGNMDKMVA 290 (351)
Q Consensus 268 y~V~l~SDvFv-~t~~gnfa~~v~ 290 (351)
.+..+.+|.+| .+..|+|+...+
T Consensus 271 m~LLS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 271 MYLLARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HHHHTTCSEEEEESTTCGGGHHHH
T ss_pred HHHHHcCCeeEECCCCCCHHHHHH
Confidence 99999999999 545888998776
No 5
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=47.39 E-value=2.6 Score=30.68 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=22.5
Q ss_pred chhhhHHHhccccccccCCCChhhhccccCCcccceeeEEe
Q 018737 231 MEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVS 271 (351)
Q Consensus 231 ~~l~~L~~~fP~~~tKe~L~~~~el~~~~~~~~aAlDy~V~ 271 (351)
..+..|++|||++ +++-+- +=+....+...++||-...
T Consensus 14 ~~~~~L~~MFP~l-D~evI~--~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 14 DTLNTLQNMFPDM-DPSLIE--DVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHSTTS-CHHHHH--HHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHcccC-CHHHHH--HHHHHcCCCHHHHHHHHHh
Confidence 4578899999998 554332 2345567888888887643
No 6
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=44.03 E-value=1.4 Score=32.37 Aligned_cols=48 Identities=13% Similarity=0.341 Sum_probs=32.7
Q ss_pred cchhhhHHHhccccccccCCCChhhhccccCCcccceeeEEeecCceeeec
Q 018737 230 LMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMAT 280 (351)
Q Consensus 230 ~~~l~~L~~~fP~~~tKe~L~~~~el~~~~~~~~aAlDy~V~l~SDvFv~t 280 (351)
+..++.|++|||++ +++.+- .-|....++..+|||-+..+..+-|-|+
T Consensus 10 ee~l~~L~emFP~l-d~~~I~--~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQEVIR--SVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHH--HHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHHCCCC-CHHHHH--HHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 56788999999998 443321 1344556788888888877776655554
No 7
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=41.91 E-value=11 Score=37.10 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=29.9
Q ss_pred hHHHHHHHHhcceEEecccccccccC-CCCCCCCcCcHHHHHHhccCceEEe
Q 018737 6 CDGVGVAHLLNATLVLPKFEVAAYWN-ESSDFADIFEADYFIQHMDGFVKVV 56 (351)
Q Consensus 6 cdaV~vArlLnATLVlP~l~~~~~w~-d~s~F~dIfD~dhFI~sL~~dVrIv 56 (351)
.-+.+.|+.||.|||||-+-.-..-+ ---.|++-|+++. |+..-|||
T Consensus 28 LG~LafAk~lnRTLvlPpwi~y~~~~~~~vpf~~yF~v~~----l~~yhrvi 75 (362)
T 3zy2_A 28 LGVLAFAKALDRTLVLPNFIEFKHPETKMIPFEFLFQVGT----VAKYTRVV 75 (362)
T ss_dssp HHHHHHHHHHTCEEECCCEEECSSSSCEEECHHHHBCHHH----HTTTSCEE
T ss_pred HHHHHHHHhhCceEecCccccccCCcccccchhheeecch----hhhhceee
Confidence 34678999999999998764221111 0124888888765 44444554
No 8
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=27.70 E-value=39 Score=27.99 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEeecC
Q 018737 199 KCPLTPNETALILQALSIPTNTNIYLAAGD 228 (351)
Q Consensus 199 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g~ 228 (351)
.|||++||+...|+.+--+. ...||..+.
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~-~~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPT-NKLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSS-CEEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCc-ceeeeeehh
Confidence 69999999999999987554 356666554
No 9
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=27.14 E-value=39 Score=28.70 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=56.6
Q ss_pred eEeeeccchhhhhhcccccCCCC-----hhHHHHHHHHhcCCCCCCchhhhhhhcCCCCC-CCHHHH-HHHHHHcCCCCC
Q 018737 147 LSLHLRFEPDMVAYSQCEYQGLS-----PTSMQAIEAARGDRKPWTGEVAHIWRRRGKCP-LTPNET-ALILQALSIPTN 219 (351)
Q Consensus 147 iAlHLR~E~Dmla~s~C~~~g~~-----~~e~~~l~~~R~~~~~w~~~~~~~~R~~G~CP-LtPeEv-gl~L~alGf~~~ 219 (351)
++--++.+.. -.|+||...+.+ =+|.-+|.++-.. ..+.-+.-..-...+. | ++|=-+ -.+|..+| .+
T Consensus 38 VGAal~~~dG-~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~~-~~~~PCG~Crq~l~E~~--~~ 112 (146)
T 2fr5_A 38 VGAALLTGDG-RIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQE-EFISPCGACRQVMREFG--TD 112 (146)
T ss_dssp EEEEEEETTS-CEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCSS-SCCCCCHHHHHHHHHTC--SS
T ss_pred EEEEEEeCCC-cEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCCC-cccCCCHHHHHHHHHhC--CC
Confidence 6777777644 556788743322 2566666554321 2221110000011111 3 444333 45777777 78
Q ss_pred cEEEEeecCCcchhhhHHHhccccccccCC
Q 018737 220 TNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 249 (351)
Q Consensus 220 T~IYlA~g~g~~~l~~L~~~fP~~~tKe~L 249 (351)
+.||++..+|.....+|+++.|.-++.++|
T Consensus 113 ~~v~~~~~~g~~~~~~l~eLLP~~F~~~~l 142 (146)
T 2fr5_A 113 WAVYMTKPDGTFVVRTVQELLPASFGPEDL 142 (146)
T ss_dssp CEEEEECTTSCEEEEEHHHHSTTCCCGGGG
T ss_pred CEEEEECCCCCEEEEEHHHhCCCCCChHHH
Confidence 999999888865567899999998888776
No 10
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.37 E-value=5.7 Score=29.91 Aligned_cols=38 Identities=11% Similarity=0.249 Sum_probs=24.0
Q ss_pred cchhhhHHHhccccccccCCCChhhhccccCCcccceeeEE
Q 018737 230 LMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYV 270 (351)
Q Consensus 230 ~~~l~~L~~~fP~~~tKe~L~~~~el~~~~~~~~aAlDy~V 270 (351)
+..++-|++|||++ +++.|- .-|....++..+|||-+.
T Consensus 19 ~~~v~~L~~MFP~l-D~~vI~--~vL~a~~G~vd~aId~LL 56 (67)
T 2dhy_A 19 NQAMDDFKTMFPNM-DYDIIE--CVLRANSGAVDATIDQLL 56 (67)
T ss_dssp HHHHHHHHHHCSSS-CHHHHH--HHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHH--HHHHHcCCCHHHHHHHHH
Confidence 45678899999998 444332 234445666667776543
No 11
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=22.77 E-value=32 Score=28.45 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHcCCCCCc
Q 018737 202 LTPNETALILQALSIPTNT 220 (351)
Q Consensus 202 LtPeEvgl~L~alGf~~~T 220 (351)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999996543
No 12
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=20.72 E-value=58 Score=27.50 Aligned_cols=99 Identities=15% Similarity=0.231 Sum_probs=53.5
Q ss_pred eeEeeeccchhhhhhcccccCCC-----ChhHHHHHHHHhcC-CCCCCchhhhhhhcCCCCCCCHHHH-HHHHHHcCCCC
Q 018737 146 FLSLHLRFEPDMVAYSQCEYQGL-----SPTSMQAIEAARGD-RKPWTGEVAHIWRRRGKCPLTPNET-ALILQALSIPT 218 (351)
Q Consensus 146 fiAlHLR~E~Dmla~s~C~~~g~-----~~~e~~~l~~~R~~-~~~w~~~~~~~~R~~G~CPLtPeEv-gl~L~alGf~~ 218 (351)
-++.=++.+.. -.|+||...+. -=+|+-+|-++-.. ...+..-. .-...+. |++|==+ -.+|..++ +.
T Consensus 34 ~VGAAll~~dG-~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G~~~~~aia--v~~~~~~-~~~PCG~CRQ~l~E~~-~~ 108 (141)
T 2d30_A 34 QVGAALLTQDG-KVYRGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIA--IVADTKR-PVPPCGACRQVMVELC-KQ 108 (141)
T ss_dssp CEEEEEEETTC-CEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEE--EEESCSS-CCCCCHHHHHHHHHHS-CT
T ss_pred cEEEEEEeCCC-CEEEeeccccCCCCcccCHHHHHHHHHHHCCCCceEEEE--EEeCCCC-ccCcCHHHHHHHHHhc-CC
Confidence 37888888755 67788874321 22566666554321 11111100 0001111 4555443 55667764 36
Q ss_pred CcEEEEeecCCcchhhhHHHhccccccccCC
Q 018737 219 NTNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 249 (351)
Q Consensus 219 ~T~IYlA~g~g~~~l~~L~~~fP~~~tKe~L 249 (351)
++.||++..+|.....+|.++.|.-++.++|
T Consensus 109 ~~~V~~~~~~g~~~~~~l~eLLP~~F~~~~l 139 (141)
T 2d30_A 109 DTKVYLSNLHGDVQETTVGELLPGAFLAEDL 139 (141)
T ss_dssp TCEEEEECSSSCEEEEEHHHHSTTC------
T ss_pred CeEEEEECCCCCEEEEEHHHhCCCCCChhhc
Confidence 8899999888766667899999998888776
Done!