Query 018737
Match_columns 351
No_of_seqs 132 out of 410
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 05:17:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018737.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018737hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgla_ a.5.2.4 (A:) Toll-inte 64.2 0.21 1.5E-05 35.3 -2.7 51 227-280 7-57 (59)
2 d2ihoa2 d.3.1.18 (A:156-293) A 38.8 2.9 0.00021 33.2 -0.1 34 18-51 31-69 (138)
3 d1oqya2 a.5.2.1 (A:317-360) DN 34.7 2.7 0.0002 27.7 -0.7 27 203-229 1-31 (44)
4 d1l5ia_ d.89.1.4 (A:) DNA-bind 33.1 21 0.0015 27.7 4.2 29 199-228 17-45 (118)
5 d2fr5a1 c.97.1.1 (A:11-146) mo 29.3 13 0.00095 29.2 2.4 40 209-250 94-133 (136)
6 d1f54a_ a.39.1.5 (A:) Calmodul 28.5 25 0.0019 23.8 3.7 12 167-178 3-14 (77)
7 d1uwza_ c.97.1.1 (A:) mono-dom 25.7 22 0.0016 27.6 3.1 40 209-249 91-130 (130)
8 d2g7ja1 d.198.5.1 (A:1-112) Pu 24.3 15 0.0011 28.0 1.8 18 202-219 3-20 (112)
9 d1vjna_ d.157.1.4 (A:) Hypothe 24.1 55 0.004 26.4 5.7 42 5-51 143-184 (209)
10 d1jjcb2 a.6.1.1 (B:400-474) Do 17.3 40 0.0029 23.4 2.8 23 194-217 13-35 (75)
No 1
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.22 E-value=0.21 Score=35.31 Aligned_cols=51 Identities=14% Similarity=0.346 Sum_probs=33.9
Q ss_pred cCCcchhhhHHHhccccccccCCCChhhhccccCCcccceeeEEeecCceeeec
Q 018737 227 GDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMAT 280 (351)
Q Consensus 227 g~g~~~l~~L~~~fP~~~tKe~L~~~~el~~~~~~~~aAlDy~V~l~SDvFv~t 280 (351)
|..+..+..|++|||++ +++.+- .-|....++..+|+|=+.-..-+.|-|+
T Consensus 7 ~~~Ee~i~~LkeMFP~~-D~~vI~--~VL~a~~G~vd~aid~LL~Msd~~~gp~ 57 (59)
T d1wgla_ 7 GCSEEDLKAIQDMFPNM-DQEVIR--SVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp SSCHHHHHHHHHHCSSS-CHHHHH--HHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCcHHHHHHHHHHCCCC-CHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCcCCC
Confidence 33466789999999998 333321 2345567778888887766666666554
No 2
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=38.80 E-value=2.9 Score=33.23 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=28.2
Q ss_pred eEEecccccccccCCC-----CCCCCcCcHHHHHHhccC
Q 018737 18 TLVLPKFEVAAYWNES-----SDFADIFEADYFIQHMDG 51 (351)
Q Consensus 18 TLVlP~l~~~~~w~d~-----s~F~dIfD~dhFI~sL~~ 51 (351)
=||+|...-++.|+++ ..=+.|||-|.|--..|.
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~Ka 69 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKA 69 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHH
Confidence 4899999999999874 355789999999877763
No 3
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.75 E-value=2.7 Score=27.68 Aligned_cols=27 Identities=37% Similarity=0.623 Sum_probs=19.0
Q ss_pred CHHHHHHH--HHHcCCCCCc--EEEEeecCC
Q 018737 203 TPNETALI--LQALSIPTNT--NIYLAAGDG 229 (351)
Q Consensus 203 tPeEvgl~--L~alGf~~~T--~IYlA~g~g 229 (351)
||+|...+ |.+|||+++. ..|+|-.+.
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdKN 31 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEKN 31 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSSC
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCcC
Confidence 45554443 6799999987 468887763
No 4
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=33.06 E-value=21 Score=27.75 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEeecC
Q 018737 199 KCPLTPNETALILQALSIPTNTNIYLAAGD 228 (351)
Q Consensus 199 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g~ 228 (351)
+|||+|||+...|+.|--+.+. .||..+.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 6999999999999998765544 5666544
No 5
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.31 E-value=13 Score=29.20 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=32.1
Q ss_pred HHHHHcCCCCCcEEEEeecCCcchhhhHHHhccccccccCCC
Q 018737 209 LILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALR 250 (351)
Q Consensus 209 l~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fP~~~tKe~L~ 250 (351)
.+|..+ ..++.||+...+|......|+++.|.-+++++|=
T Consensus 94 Q~l~E~--~~~~~i~~~~~~~~~~~~tl~eLLP~~F~~~~L~ 133 (136)
T d2fr5a1 94 QVMREF--GTDWAVYMTKPDGTFVVRTVQELLPASFGPEDLQ 133 (136)
T ss_dssp HHHHHT--CSSCEEEEECTTSCEEEEEHHHHSTTCCCGGGGT
T ss_pred HHHHhh--CCCceEEEECCCCCEEEeEHHHhCcCCCChHHhC
Confidence 455664 5688999998888777778999999999888874
No 6
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.53 E-value=25 Score=23.78 Aligned_cols=12 Identities=8% Similarity=0.279 Sum_probs=7.7
Q ss_pred CCChhHHHHHHH
Q 018737 167 GLSPTSMQAIEA 178 (351)
Q Consensus 167 g~~~~e~~~l~~ 178 (351)
++++++.++|+.
T Consensus 3 ~lt~eqi~el~~ 14 (77)
T d1f54a_ 3 NLTEEQIAEFKE 14 (77)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 677777665543
No 7
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=25.67 E-value=22 Score=27.57 Aligned_cols=40 Identities=10% Similarity=0.200 Sum_probs=30.7
Q ss_pred HHHHHcCCCCCcEEEEeecCCcchhhhHHHhccccccccCC
Q 018737 209 LILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 249 (351)
Q Consensus 209 l~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fP~~~tKe~L 249 (351)
.+|..++ +.++.||+...+|+....+|+++.|.=+++++|
T Consensus 91 Q~l~E~~-~~~~~i~l~~~~g~~~~~~l~eLLP~~F~~~dL 130 (130)
T d1uwza_ 91 QVISELC-TKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDL 130 (130)
T ss_dssp HHHHHHS-CTTCEEEEECSSSCEEEEEHHHHSTTCCCGGGC
T ss_pred HHHHHhC-CCCcEEEEECCCCCEEEEEHHHhCcCCCCcccC
Confidence 4555553 467999999998765555799999999888876
No 8
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=24.30 E-value=15 Score=27.96 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHcCCCCC
Q 018737 202 LTPNETALILQALSIPTN 219 (351)
Q Consensus 202 LtPeEvgl~L~alGf~~~ 219 (351)
|-|.||+.+|+..||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999654
No 9
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=24.13 E-value=55 Score=26.45 Aligned_cols=42 Identities=29% Similarity=0.497 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhcceEEecccccccccCCCCCCCCcCcHHHHHHhccC
Q 018737 5 FCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDG 51 (351)
Q Consensus 5 IcdaV~vArlLnATLVlP~l~~~~~w~d~s~F~dIfD~dhFI~sL~~ 51 (351)
--+|+.+|+.|++-.|||-= |+.....| ++=..|.|++.++.
T Consensus 143 ~~ea~~~~~~l~pk~viP~H----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 143 PKEAKEVADLLNAKVIIPMH----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp HHHHHHHHHHTTCSEEEEES----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCEEEEec----cCCccccc-CcCCHHHHHHHhhh
Confidence 45889999999999999963 22222232 45567889988774
No 10
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=17.32 E-value=40 Score=23.41 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=19.5
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCC
Q 018737 194 WRRRGKCPLTPNETALILQALSIP 217 (351)
Q Consensus 194 ~R~~G~CPLtPeEvgl~L~alGf~ 217 (351)
.+..|.. ++++|+..+|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 3556765 9999999999999995
Done!