Query 018738
Match_columns 351
No_of_seqs 210 out of 1351
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:18:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkr_A Calcium release-activat 6.9 3E+02 0.01 24.3 3.1 42 13-56 128-169 (214)
2 2f8e_A VPG protein; RNA-depend 6.3 1.3E+02 0.0044 17.5 0.2 14 99-112 3-16 (26)
3 2kdx_A HYPA, hydrogenase/ureas 6.0 2.6E+02 0.0088 21.8 2.0 22 254-292 1-22 (119)
4 2i2j_A Signaling peptide UA159 5.7 3.4E+02 0.012 15.4 1.8 20 200-220 1-20 (26)
5 3dvk_B Voltage-dependent R-typ 5.3 2.1E+02 0.0072 16.4 0.8 8 203-211 12-19 (23)
6 3ug9_A Archaeal-type opsin 1, 4.8 1.8E+03 0.063 20.5 7.4 19 242-260 167-185 (333)
7 1r4p_B Sltii B subunit, shiga- 4.1 1.1E+02 0.0038 21.7 -1.2 13 202-214 24-36 (70)
8 1sdi_A ORF-23, hypothetical pr 4.1 2.5E+02 0.0085 24.9 0.7 10 208-217 186-195 (213)
9 3f2e_A SIRV coat protein; four 3.3 1.2E+03 0.042 17.2 3.8 32 252-293 15-46 (100)
10 2wdq_D Succinate dehydrogenase 3.2 1.6E+03 0.053 17.0 5.0 48 246-320 60-107 (115)
No 1
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=6.91 E-value=3e+02 Score=24.29 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhcCCchhhHHhhhhhHHHHhhhccccchhH
Q 018738 13 ILAISCLSYCYLIASKFPKGLLRLISLFPVFYLFIILPLNLSSI 56 (351)
Q Consensus 13 ~~~~~~l~y~~~~~~~~~~g~~rl~~~~P~~~~~~~lPlgis~~ 56 (351)
+..++.+||.|+.+-..++++.--....|+..+++.. .+.||
T Consensus 128 L~evall~WVKF~~~~~~aa~~~t~vliPv~i~F~~F--a~hFY 169 (214)
T 4hkr_A 128 LLEIAILCWVKFYDLSRRAAWSATVVLIPVMIIFMAF--AIHFY 169 (214)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHTHHHHHHHHHH--HHHHH
T ss_pred HHHHHHhheEEeecCCcHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3566789999999887666666556667777654433 34455
No 2
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=6.25 E-value=1.3e+02 Score=17.47 Aligned_cols=14 Identities=7% Similarity=-0.081 Sum_probs=10.0
Q ss_pred HhcccccCCCCCCC
Q 018738 99 ACLPIKFKPNPPQG 112 (351)
Q Consensus 99 ~~gPI~~~~~~~~q 112 (351)
.+||.+|++..+-.
T Consensus 3 yagplerq~plkvk 16 (26)
T 2f8e_A 3 YAGPLERQRPLKVK 16 (26)
T ss_pred cCCchhhcCcceee
Confidence 47888888876543
No 3
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=5.98 E-value=2.6e+02 Score=21.84 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=16.6
Q ss_pred HHHHHhHhhhcccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 018738 254 GLMHEVIYYYLTRVPPSWEVTWFFVLHGVCVAIEVWLKK 292 (351)
Q Consensus 254 Gl~H~~~~~~~~~~~~~~~~~~ffll~g~~i~~E~~~~~ 292 (351)
|.|||++ +.|++.=.+|+..++
T Consensus 1 ~~MHE~s-----------------i~~~i~~~~~~~A~~ 22 (119)
T 2kdx_A 1 GSMHEYS-----------------VVSSLIALCEEHAKK 22 (119)
T ss_dssp CCCHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred CcccHHH-----------------HHHHHHHHHHHHHHH
Confidence 6799985 777887777777665
No 4
>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR {Synthetic}
Probab=5.74 E-value=3.4e+02 Score=15.45 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=13.5
Q ss_pred cCChHHHhhhhhhHhHHhhhh
Q 018738 200 ATSLQDFWGRRWNLMVTSILR 220 (351)
Q Consensus 200 s~Sl~dFWGrrWH~~l~~~lr 220 (351)
+.|++.|. |-.|.++.+-+.
T Consensus 1 sgslstff-rlfnrsftqalg 20 (26)
T 2i2j_A 1 SGSLSTFF-RLFNRSFTQALG 20 (26)
T ss_pred CccHHHHH-HHHhHHHHHHhc
Confidence 35778888 777777665443
No 5
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=5.31 E-value=2.1e+02 Score=16.36 Aligned_cols=8 Identities=13% Similarity=0.691 Sum_probs=4.7
Q ss_pred hHHHhhhhh
Q 018738 203 LQDFWGRRW 211 (351)
Q Consensus 203 l~dFWGrrW 211 (351)
|+|+| |++
T Consensus 12 I~d~~-r~~ 19 (23)
T 3dvk_B 12 IMDYY-KQS 19 (26)
T ss_dssp HHHHH-HHH
T ss_pred HHHHH-HHH
Confidence 56666 554
No 6
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin, seven-transmembrane, light-gated cation membrane protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Probab=4.76 E-value=1.8e+03 Score=20.47 Aligned_cols=19 Identities=26% Similarity=0.067 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 018738 242 QLLGVVATFIVSGLMHEVI 260 (351)
Q Consensus 242 ~~~~l~~tF~vSGl~H~~~ 260 (351)
+.+..=+.|+++|+.=|++
T Consensus 167 ~LI~asvvMIVtGyiGe~~ 185 (333)
T 3ug9_A 167 GLLVSDIGTIVWGTTAALS 185 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3444455788899988875
No 7
>1r4p_B Sltii B subunit, shiga-like toxin type II B subunit; AB5 toxin; HET: 1PS; 1.77A {Escherichia coli} SCOP: b.40.2.1 PDB: 2ga4_B* 3mxg_A* 2bos_A* 1qoh_A*
Probab=4.12 E-value=1.1e+02 Score=21.75 Aligned_cols=13 Identities=38% Similarity=1.127 Sum_probs=9.8
Q ss_pred ChHHHhhhhhhHh
Q 018738 202 SLQDFWGRRWNLM 214 (351)
Q Consensus 202 Sl~dFWGrrWH~~ 214 (351)
+=.|+|-.|||..
T Consensus 24 ~gkeywt~rwnlq 36 (70)
T 1r4p_B 24 DGKEYWTSRWNLQ 36 (70)
T ss_dssp TTEEEEECCTTHH
T ss_pred CCeeeeecccchh
Confidence 3468999999953
No 8
>1sdi_A ORF-23, hypothetical protein YCFC; structural genomics, paracytosis, peripheral membrane protein, PSI, protein structure initiative; 1.65A {Escherichia coli} SCOP: a.198.1.1 PDB: 1qz4_A
Probab=4.11 E-value=2.5e+02 Score=24.87 Aligned_cols=10 Identities=40% Similarity=0.667 Sum_probs=8.5
Q ss_pred hhhhhHhHHh
Q 018738 208 GRRWNLMVTS 217 (351)
Q Consensus 208 GrrWH~~l~~ 217 (351)
|+|||..|++
T Consensus 186 G~RwqllF~R 195 (213)
T 1sdi_A 186 GGRLQLMFSR 195 (213)
T ss_dssp CCHHHHHHHH
T ss_pred CchhhHHhhH
Confidence 7899999876
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=3.28 E-value=1.2e+03 Score=17.18 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=23.3
Q ss_pred HHHHHHHhHhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 018738 252 VSGLMHEVIYYYLTRVPPSWEVTWFFVLHGVCVAIEVWLKKK 293 (351)
Q Consensus 252 vSGl~H~~~~~~~~~~~~~~~~~~ffll~g~~i~~E~~~~~~ 293 (351)
+|.+.-+++..--.+ -++||.++-+|+.+.|.
T Consensus 15 vsavltqygvtgpnr----------aiyqgfglkvaralnr~ 46 (100)
T 3f2e_A 15 VSAVLSQYGITGPNR----------AIYQGFGLKVARALNRL 46 (100)
T ss_dssp HHHHHHHHTCCGGGH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCccH----------HHHhhhhHHHHHHHHhc
Confidence 566666766443333 58999999999999885
No 10
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=3.19 E-value=1.6e+03 Score=17.02 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhhhh
Q 018738 246 VVATFIVSGLMHEVIYYYLTRVPPSWEVTWFFVLHGVCVAIEVWLKKKLIKRCGRLPRAVSGALVLIFVAATGLW 320 (351)
Q Consensus 246 l~~tF~vSGl~H~~~~~~~~~~~~~~~~~~ffll~g~~i~~E~~~~~~~~~~~~~~p~~l~~~~t~~fv~v~~~w 320 (351)
....++.+.+.|... |+=.++||..+... -|..-...+..+..+++.|
T Consensus 60 ~~~l~l~~~~~H~~~--------------------Gir~ii~Dyv~~~~-------~R~~l~~~~~~~~~~~~~~ 107 (115)
T 2wdq_D 60 FTLLALFSILIHAWI--------------------GMWQVLTDYVKPLA-------LRLMLQLVIVVALVVYVIY 107 (115)
T ss_dssp HHHHHHHHHHHHHHH--------------------HHHHHHHHHCCSHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHHHccchh-------HHHHHHHHHHHHHHHHHHH
Done!