Query 018738
Match_columns 351
No_of_seqs 210 out of 1351
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 05:18:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018738.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018738hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6d_ f.21.2.2 (D:) Fumarate 5.9 1.3E+02 0.0096 22.3 2.2 32 39-70 28-64 (119)
2 d1v54l_ f.23.6.1 (L:) Mitochon 5.1 2E+02 0.015 17.6 2.3 15 241-255 18-32 (46)
3 d1r4pb_ b.40.2.1 (B:) Verotoxi 4.6 45 0.0033 22.1 -1.2 12 203-214 25-36 (70)
4 d2e74f1 f.23.25.1 (F:1-32) Pet 4.3 3.1E+02 0.023 15.0 2.5 13 1-13 1-13 (32)
5 d1c4qa_ b.40.2.1 (A:) Verotoxi 3.6 60 0.0044 21.4 -1.2 13 202-214 25-37 (69)
6 d1ulia2 d.129.3.3 (A:171-451) 3.6 1.8E+02 0.013 23.6 1.5 18 198-216 253-270 (281)
7 d1or7c_ a.180.1.1 (C:) N-termi 3.6 1.7E+02 0.013 18.9 1.2 19 200-220 26-44 (66)
8 d2b1xa2 d.129.3.3 (A:163-441) 3.2 1.7E+02 0.012 24.0 0.9 18 198-216 257-274 (279)
9 d1nekd_ f.21.2.2 (D:) Succinat 3.1 7.4E+02 0.054 16.9 4.9 27 246-292 58-84 (113)
10 d1wqla2 d.129.3.3 (A:181-459) 2.9 1.8E+02 0.013 23.7 0.9 19 198-217 253-271 (279)
No 1
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=5.95 E-value=1.3e+02 Score=22.27 Aligned_cols=32 Identities=28% Similarity=0.556 Sum_probs=20.6
Q ss_pred hhhHHH--Hhhhccccc---hhHHHhHhHHHHHHHhh
Q 018738 39 LFPVFY--LFIILPLNL---SSIHFCGVTSFFLVWLA 70 (351)
Q Consensus 39 ~~P~~~--~~~~lPlgi---s~~~~~~i~af~~~wl~ 70 (351)
..|++. .-+++|+|+ +....+.+.+|--+|+.
T Consensus 28 ~~Pvlill~giLlPlG~~~~~a~~y~~i~aFa~s~iG 64 (119)
T d1kf6d_ 28 IAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIG 64 (119)
T ss_dssp THHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHhcccCCccccCHHHHHHHHhhHHH
Confidence 456543 358999999 44555777766655544
No 2
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.13 E-value=2e+02 Score=17.57 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHH
Q 018738 241 PQLLGVVATFIVSGL 255 (351)
Q Consensus 241 ~~~~~l~~tF~vSGl 255 (351)
-+..+++++|+-||+
T Consensus 18 ~rLla~m~~~fGsgf 32 (46)
T d1v54l_ 18 WRLLAMMTLFFGSGF 32 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
Confidence 468899999999986
No 3
>d1r4pb_ b.40.2.1 (B:) Verotoxin-1/shiga-toxin, B-pentamer {Shigella dysenteriae, toxin II [TaxId: 622]}
Probab=4.61 E-value=45 Score=22.07 Aligned_cols=12 Identities=42% Similarity=1.207 Sum_probs=9.3
Q ss_pred hHHHhhhhhhHh
Q 018738 203 LQDFWGRRWNLM 214 (351)
Q Consensus 203 l~dFWGrrWH~~ 214 (351)
=.|+|-.|||..
T Consensus 25 gkeywtnrwnlq 36 (70)
T d1r4pb_ 25 GKEYWTSRWNLQ 36 (70)
T ss_dssp TEEEEECCTTHH
T ss_pred Cceeeccccchh
Confidence 358999999953
No 4
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.27 E-value=3.1e+02 Score=15.01 Aligned_cols=13 Identities=15% Similarity=0.020 Sum_probs=8.0
Q ss_pred CchhhhhHHHHHH
Q 018738 1 MGGELKNLIKVWI 13 (351)
Q Consensus 1 ~~~e~~~~~~~~~ 13 (351)
|.+|+-|-...+.
T Consensus 1 m~~eil~aa~lsf 13 (32)
T d2e74f1 1 MTEEMLYAALLSF 13 (32)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHh
Confidence 7778776554443
No 5
>d1c4qa_ b.40.2.1 (A:) Verotoxin-1/shiga-toxin, B-pentamer {Escherichia coli [TaxId: 562]}
Probab=3.65 E-value=60 Score=21.36 Aligned_cols=13 Identities=23% Similarity=0.158 Sum_probs=9.8
Q ss_pred ChHHHhhhhhhHh
Q 018738 202 SLQDFWGRRWNLM 214 (351)
Q Consensus 202 Sl~dFWGrrWH~~ 214 (351)
+=.|+|-.|||..
T Consensus 25 ~gkeywtnrwnlq 37 (69)
T d1c4qa_ 25 GDKELATNRANLQ 37 (69)
T ss_dssp TTEEEEECCTTHH
T ss_pred cCceehhcccchh
Confidence 3468999999953
No 6
>d1ulia2 d.129.3.3 (A:171-451) Biphenyl dioxygenase large subunit BphA1, C-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]}
Probab=3.61 E-value=1.8e+02 Score=23.60 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=14.9
Q ss_pred cccCChHHHhhhhhhHhHH
Q 018738 198 YLATSLQDFWGRRWNLMVT 216 (351)
Q Consensus 198 ~~s~Sl~dFWGrrWH~~l~ 216 (351)
+.-.+++.|| |+|+....
T Consensus 253 ~~E~~~R~f~-~~w~~~M~ 270 (281)
T d1ulia2 253 YSEEAARGLY-TQWVRMMT 270 (281)
T ss_dssp BCSHHHHHHH-HHHHHHHT
T ss_pred CCcHHHHHHH-HHHHHHhc
Confidence 5678899999 99997664
No 7
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]}
Probab=3.58 E-value=1.7e+02 Score=18.94 Aligned_cols=19 Identities=21% Similarity=0.642 Sum_probs=14.0
Q ss_pred cCChHHHhhhhhhHhHHhhhh
Q 018738 200 ATSLQDFWGRRWNLMVTSILR 220 (351)
Q Consensus 200 s~Sl~dFWGrrWH~~l~~~lr 220 (351)
+...++.| +|+|. .+..+|
T Consensus 26 d~e~~~~W-~~Yhl-i~d~lr 44 (66)
T d1or7c_ 26 NPEMQKTW-ESYHL-IRDSMR 44 (66)
T ss_dssp CHHHHHHH-HHHHH-HHHHHH
T ss_pred CHHHHHHH-HHHHH-HHHHHh
Confidence 46789999 99995 455555
No 8
>d2b1xa2 d.129.3.3 (A:163-441) Naphthalene 1,2-dioxygenase alpha subunit, C-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]}
Probab=3.16 E-value=1.7e+02 Score=23.97 Aligned_cols=18 Identities=17% Similarity=0.530 Sum_probs=14.8
Q ss_pred cccCChHHHhhhhhhHhHH
Q 018738 198 YLATSLQDFWGRRWNLMVT 216 (351)
Q Consensus 198 ~~s~Sl~dFWGrrWH~~l~ 216 (351)
..-++++.|| |+|+...+
T Consensus 257 ~~E~~~R~fy-~~W~~~M~ 274 (279)
T d2b1xa2 257 YAEANQRNFL-EYWMQLML 274 (279)
T ss_dssp CCCHHHHHHH-HHHHHHHH
T ss_pred CCcHHHHHHH-HHHHHHhc
Confidence 4568899999 99998764
No 9
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=3.09 E-value=7.4e+02 Score=16.89 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhHhhhcccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 018738 246 VVATFIVSGLMHEVIYYYLTRVPPSWEVTWFFVLHGVCVAIEVWLKK 292 (351)
Q Consensus 246 l~~tF~vSGl~H~~~~~~~~~~~~~~~~~~ffll~g~~i~~E~~~~~ 292 (351)
....|+++.+.|.. .|+-.++||..+.
T Consensus 58 l~~l~l~~~~~H~~--------------------lGl~~IieDYi~~ 84 (113)
T d1nekd_ 58 FTLLALFSILIHAW--------------------IGMWQVLTDYVKP 84 (113)
T ss_dssp HHHHHHHHHHHHHH--------------------HHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHH--------------------HhHhhhHHHhcCC
Confidence 45667888888875 3788899998864
No 10
>d1wqla2 d.129.3.3 (A:181-459) Large subunit of cumene dioxygenase cumA1 {Pseudomonas fluorescens [TaxId: 294]}
Probab=2.93 E-value=1.8e+02 Score=23.66 Aligned_cols=19 Identities=21% Similarity=0.700 Sum_probs=15.0
Q ss_pred cccCChHHHhhhhhhHhHHh
Q 018738 198 YLATSLQDFWGRRWNLMVTS 217 (351)
Q Consensus 198 ~~s~Sl~dFWGrrWH~~l~~ 217 (351)
+.-.+.+.|| |+|+.....
T Consensus 253 ~sE~~~R~f~-~~W~~~M~~ 271 (279)
T d1wqla2 253 YSEEAARGFY-HHWSRMMSE 271 (279)
T ss_dssp BCSHHHHHHH-HHHHHHHHC
T ss_pred CChHHHHHHH-HHHHHHhcc
Confidence 3467899999 999987653
Done!