BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018740
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
G +++A CG G + I AK+ + + ++D S L++ E E N K N ++A
Sbjct: 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARE--NTEKNGIK-NVKFLQA 94
Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 290
+I LPF SS D + + SP + + +VL+PG GT +++G
Sbjct: 95 NIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPG----GTITVIEG 143
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224
E+ ++ L V G I+D CG G F R + G S V+ LD SE L +
Sbjct: 31 EWPALRAXLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKXLARA------R 83
Query: 225 SNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284
+ P RAD+ +L S D ++ A+H + + + L PGG FV +
Sbjct: 84 AAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFS 143
Query: 285 T 285
T
Sbjct: 144 T 144
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 25/152 (16%)
Query: 151 RQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
+ +FVW + E + L P G I+D CG+G + A+SG + V+ D +
Sbjct: 38 KHSFVW-------QYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNA 88
Query: 211 ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAE 270
+++ N+P +F + A R+ +DAV + A +H P +A
Sbjct: 89 ATXIEKA------RQNYPHLHFDVADARNFRV---DKPLDAVFSNAXLHWVKEPEAAIAS 139
Query: 271 ISRVLRPGGVFVG-------TTYIVDGPFNLI 295
I + L+ GG FV YI++ +N +
Sbjct: 140 IHQALKSGGRFVAEFGGKGNIKYILEALYNAL 171
>pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From
Anaeromyxobacter Dehalogenans.
pdb|4HG2|B Chain B, The Structure Of A Putative Type Ii Methyltransferase From
Anaeromyxobacter Dehalogenans
Length = 257
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238
G+ +D CGSG S A+ F V A+D E ++Q P+ + + A+
Sbjct: 41 GDALDCGCGSGQASLGLAE--FFERVHAVDPGEAQIRQAL-------RHPRVTYAVAPAE 91
Query: 239 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286
+ LP +S+D A A H W AE+ RV RPG VF TY
Sbjct: 92 DTGLP--PASVDVAIAAQAXH-WFDLDRFWAELRRVARPGAVFAAVTY 136
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 177 LGGN--IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL 234
L GN ++D + G G + FA VVA D +E++LK F++ + +
Sbjct: 35 LKGNEEVLDVATGGGHVANAFAP--FVKKVVAFDLTEDILKVARAFIEGNGH---QQVEY 89
Query: 235 VRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 279
V+ D + PF V A H + +P++ V+E RVL+ GG
Sbjct: 90 VQGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGG 134
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-QESN 226
L+ Y K G ++D +CG G FS + G VV +D SE+ +++ E+ + +ESN
Sbjct: 31 LLXKYXKK--RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDXIRKAREYAKSRESN 86
Query: 227 FPKENFLLVRADISRLPFASSSID-AVHAGAAIHCWSSPSTGV-AEISRVLRPGGVFV 282
+ D +L F + D + + +H V E+ RVL+P G F+
Sbjct: 87 VE-----FIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI 139
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 235
+ G ID G G S AK FS + ALD+S++ + + + ++N + +V
Sbjct: 42 ITAGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHXNEIALKNIA-DANL-NDRIQIV 98
Query: 236 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287
+ D+ +P + D + + ++ W +T EI R+L+ G G TYI
Sbjct: 99 QGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSG----GKTYI 146
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
G ++D G+G + +K G V A+D E M+ +E V + +N +++
Sbjct: 38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK---LGLKNVEVLK 94
Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277
++ +++P +++D + H S P + E+ RV +P
Sbjct: 95 SEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKP 135
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
++D CG G + +++G + V +D SE +++ E P +F ++ D+S
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKA--VGVDISEVXIQKGKE----RGEGPDLSF--IKGDLS 108
Query: 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 279
LPF + +A+ A ++ P + EI RVL+ G
Sbjct: 109 SLPFENEQFEAIXAINSLEWTEEPLRALNEIKRVLKSDG 147
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
++D CG G ++ FA + LD S+ +K +P+ F + A
Sbjct: 89 VLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA------AKRYPQVTFCV--ASSH 140
Query: 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 300
RLPF+ +S DA+ I ++ E++RV++PGG + T GP +L L
Sbjct: 141 RLPFSDTSXDAI-----IRIYA--PCKAEELARVVKPGGWVITAT---PGPRHLXELKGL 190
Query: 301 L 301
+
Sbjct: 191 I 191
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 221 VQQESNFPKEN---FLLVRADISRLPFASSSIDAVHA-GAAIHCWSSP-STGVAEISRVL 275
+++ NF +EN + + DI +LPF S V++ G H + + EI RVL
Sbjct: 59 LKKAENFSRENNFKLNISKGDIRKLPFKDESXSFVYSYGTIFHXRKNDVKEAIDEIKRVL 118
Query: 276 RPGGV 280
+PGG+
Sbjct: 119 KPGGL 123
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN 293
AD LPF +S DAV A ++H + E +RVLRPGG +++ P
Sbjct: 118 ADAXDLPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADFVLLAPVE 174
>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
Length = 215
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 31/142 (21%)
Query: 165 EFELMKGYLKPVL--GGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENM---LKQCY 218
+F + L+P L I+ CG S L +F G F V ++DYS + ++ CY
Sbjct: 28 DFSSFRALLEPELRPEDRILVLGCGNSALSYELFL--GGFPNVTSVDYSSVVVAAMQACY 85
Query: 219 EFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC--------WSSPSTGV-- 268
V Q D+ +L F S+S D V + W+ S GV
Sbjct: 86 AHVPQ--------LRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHT 137
Query: 269 -----AEISRVLRPGGVFVGTT 285
+E+SRVL PGG F+ T
Sbjct: 138 VDQVLSEVSRVLVPGGRFISMT 159
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
++D G+G + F S + +D ++ ++ F Q++ EN +
Sbjct: 25 VLDIGAGAGHTALAF--SPYVQECIGVDATKEXVEVASSFAQEKG---VENVRFQQGTAE 79
Query: 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
LPF S D + A H +S V E++RVL+ G F+
Sbjct: 80 SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 121
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
++D CG+G+ S AK+G V+A+D SE +L Q + ++ N ++ +L++ I
Sbjct: 49 VLDVGCGTGILSMFAAKAGA-KKVIAVDQSE-ILYQAMDIIRL--NKLEDTIVLIKGKIE 104
Query: 241 RLPFASSSIDAV 252
+ +D +
Sbjct: 105 EVSLPVEKVDVI 116
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE--SNFPKENFLL 234
G +D GSG+ + FA+ G V+ +D+ + ++ V+++ + L
Sbjct: 78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL 137
Query: 235 VRADISRLPFASSS-IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
V D R+ +A + DA+H GAA +P A I + L+PGG +
Sbjct: 138 VVGD-GRMGYAEEAPYDAIHVGAA-----APVVPQALIDQ-LKPGGRLI 179
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 178 GGNIIDASCGSG----LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-----P 228
G ++D CG+G L S++ + G V+ +D +N L+ ++V+ +
Sbjct: 84 GATVLDLGCGTGRDVYLASKLVGEHGK---VIGVDMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 229 KENFLLVRADISRLPFA------SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 279
+ N ++ I L A SS+D V + + ++ EI RVLR GG
Sbjct: 141 RSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGG 197
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239
++D +CG+G+ + A+ G VV LD E ML+ +E N E ++ D+
Sbjct: 44 RVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARR-KAKERNLKIE---FLQGDV 97
Query: 240 SRLPFASSSIDAVHAGAAIHCW---SSPSTGVAEISRVLRPGGVFV 282
+ F + DAV + + ++++ L+PGGVF+
Sbjct: 98 LEIAF-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 9/112 (8%)
Query: 229 KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288
K +++ LP S D I P + E R+L+ GG Y++
Sbjct: 83 KRGVFVLKGTAENLPLKDESFDFALXVTTICFVDDPERALKEAYRILKKGG------YLI 136
Query: 289 DGPFNLIPFSRLLRQNMMQISGSYT---FLSEREIEDLCRACGLVDFKCTRN 337
G + F + + S Y F S E+ DL R G +FK +
Sbjct: 137 VGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELXDLXRKAGFEEFKVVQT 188
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
G I D G+G +S A GLF V + QQ P+ + A
Sbjct: 35 GSVIADIGAGTGGYSVALANQGLFVYAV---------EPSIVXRQQAVVHPQVEWFTGYA 85
Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284
+ LP S+D V + AIH +S E R++R G + + T
Sbjct: 86 ENLALP--DKSVDGVISILAIHHFSHLEKSFQEXQRIIRDGTIVLLT 130
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
N++D C G FS A G + +V +D+ + + C ++ +F E
Sbjct: 69 NVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEENPDFAAE 117
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
N++D C G FS A G + +V +D+ + + C ++ +F E
Sbjct: 69 NVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEENPDFAAE 117
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
N++D C G FS A G + +V +D+ + + C ++ +F E
Sbjct: 69 NVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEENPDFAAE 117
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK-ENFLLVRAD- 238
++D +CG+G+ S + + G FS V+++D S+ MLK + P +N+++ A+
Sbjct: 60 VLDVACGTGVDSIMLVEEG-FS-VMSVDASDKMLKYALKERWNRRKEPSFDNWVIEEANW 117
Query: 239 --ISRLPFASSSIDAV--------HAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
+ + + DAV H S + I+ ++RPGG+ V
Sbjct: 118 LTLDKDVLSGDGFDAVICLGNSFAHLPDCKGDQSEHRLALKNIASMVRPGGLLV 171
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 22/118 (18%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE---FVQQESNFPK-----ENF 232
++D +CG+G+ S + + G FS V ++D S+ MLK + ++E F K N+
Sbjct: 60 VLDVACGTGVDSIMLVEEG-FS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 117
Query: 233 LLVRADISRLPFASSSIDAV--------HAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
L + D+ A DAV H + S + I+ ++RPGG+ V
Sbjct: 118 LTLDKDVP----AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 171
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 22/118 (18%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE---FVQQESNFPK-----ENF 232
++D +CG+G+ S + + G FS V ++D S+ MLK + ++E F K N+
Sbjct: 60 VLDVACGTGVDSIMLVEEG-FS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 117
Query: 233 LLVRADISRLPFASSSIDAV--------HAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
L + D+ A DAV H + S + I+ ++RPGG+ V
Sbjct: 118 LTLDKDVP----AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 171
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 22/118 (18%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE---FVQQESNFPK-----ENF 232
++D +CG+G+ S + + G FS V ++D S+ MLK + ++E F K N+
Sbjct: 61 VLDVACGTGVDSIMLVEEG-FS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 118
Query: 233 LLVRADISRLPFASSSIDAV--------HAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
L + D+ A DAV H + S + I+ ++RPGG+ V
Sbjct: 119 LTLDKDVP----AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
++D CG+G+ S AK+G V+ +D SE +L Q + ++ N ++ L++ I
Sbjct: 68 VLDVGCGTGILSMFAAKAGA-KKVLGVDQSE-ILYQAMDIIRL--NKLEDTITLIKGKIE 123
Query: 241 RLPFASSSIDAV 252
+ +D +
Sbjct: 124 EVHLPVEKVDVI 135
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 16/161 (9%)
Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223
+E +KG L P G ++++ G+G + R + V ++ SE L
Sbjct: 25 EEERALKGLLPP--GESLLEVGAGTGYWLRRLP----YPQKVGVEPSEAXLAVG------ 72
Query: 224 ESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 283
P+ + VRA LPF S D V + + E RVLRPGG V
Sbjct: 73 RRRAPEATW--VRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVV 130
Query: 284 TTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324
P+ + + RL + ++ + + FL+ +++ L
Sbjct: 131 GVLEALSPWAAL-YRRLGEKGVLPWAQA-RFLAREDLKALL 169
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAK 197
+L+ L P G ++D CG+G+ S FA+
Sbjct: 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFAR 216
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 167 ELMKGYLK---PVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
EL+K L+ P G ++D CG G F + + G+ S + +D +E+M+K C
Sbjct: 26 ELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIES--IGVDINEDMIKFC 79
>pdb|3UFB|A Chain A, Crystal Structure Of A Modification Subunit Of A Putative
Type I Restriction Enzyme From Vibrio Vulnificus Yj016
Length = 530
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 17/89 (19%)
Query: 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK- 215
G F P M + P LG +++D +CG+G F LV A ++ E K
Sbjct: 197 GEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGF-----------LVEAFEHLERQCKT 245
Query: 216 -QCYEFVQQESNFPKEN----FLLVRADI 239
+ E +Q+ S F E +LLV+ ++
Sbjct: 246 VEDREVLQESSIFGGEAKSLPYLLVQMNL 274
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
++D CG+G+ S AK G V+ +D S ++++ E V+ K L + +
Sbjct: 42 VLDVGCGTGILSMFAAKHGA-KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV 99
Query: 241 RLPFASSSI 249
LPF I
Sbjct: 100 HLPFPKVDI 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,647,274
Number of Sequences: 62578
Number of extensions: 382890
Number of successful extensions: 793
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 34
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)