Query 018740
Match_columns 351
No_of_seqs 377 out of 3611
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:38:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 100.0 4.7E-28 1E-32 212.1 18.6 208 114-348 12-238 (238)
2 PF01209 Ubie_methyltran: ubiE 100.0 1.1E-28 2.4E-33 218.3 12.3 204 113-347 7-233 (233)
3 PLN02233 ubiquinone biosynthes 99.9 5.2E-25 1.1E-29 199.1 19.2 177 171-347 67-261 (261)
4 PRK11088 rrmA 23S rRNA methylt 99.9 2.7E-24 5.8E-29 196.0 15.4 179 71-289 2-185 (272)
5 KOG1540 Ubiquinone biosynthesi 99.9 5.3E-23 1.2E-27 176.9 14.7 210 113-347 60-295 (296)
6 TIGR02752 MenG_heptapren 2-hep 99.9 1.4E-22 3E-27 180.5 17.6 177 168-347 36-231 (231)
7 PLN02244 tocopherol O-methyltr 99.9 1.5E-21 3.2E-26 183.1 22.9 168 166-336 102-278 (340)
8 PTZ00098 phosphoethanolamine N 99.9 2E-20 4.4E-25 169.3 20.9 162 164-336 39-202 (263)
9 PLN02396 hexaprenyldihydroxybe 99.9 2.6E-21 5.7E-26 178.6 15.3 151 176-334 130-287 (322)
10 TIGR00452 methyltransferase, p 99.9 2.7E-20 5.8E-25 171.1 18.9 161 167-336 111-273 (314)
11 PRK05785 hypothetical protein; 99.9 1.3E-20 2.8E-25 166.7 16.0 183 139-348 26-225 (226)
12 PRK11036 putative S-adenosyl-L 99.9 1.4E-20 3.1E-25 169.9 16.3 163 168-336 36-207 (255)
13 PF13489 Methyltransf_23: Meth 99.9 8.9E-21 1.9E-25 158.8 13.7 139 175-333 20-160 (161)
14 PRK15068 tRNA mo(5)U34 methylt 99.9 2.9E-20 6.4E-25 172.6 18.3 164 167-337 112-275 (322)
15 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.8E-21 4E-26 167.7 8.6 148 176-333 58-212 (243)
16 PRK14103 trans-aconitate 2-met 99.8 4.6E-20 9.9E-25 166.7 17.1 155 167-333 19-181 (255)
17 PF08003 Methyltransf_9: Prote 99.8 5.4E-20 1.2E-24 164.1 14.4 161 167-336 105-267 (315)
18 PLN02490 MPBQ/MSBQ methyltrans 99.8 4.9E-19 1.1E-23 164.0 21.3 145 176-336 112-256 (340)
19 PLN02336 phosphoethanolamine N 99.8 3.9E-19 8.5E-24 174.6 21.5 160 165-335 254-413 (475)
20 PRK10258 biotin biosynthesis p 99.8 3.2E-19 6.9E-24 160.8 19.1 152 166-331 31-182 (251)
21 PRK00216 ubiE ubiquinone/menaq 99.8 9.7E-19 2.1E-23 156.2 21.3 179 168-348 42-239 (239)
22 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 9.1E-19 2E-23 154.7 18.9 174 169-347 31-223 (223)
23 PRK11873 arsM arsenite S-adeno 99.8 2.6E-18 5.7E-23 156.7 22.0 154 174-334 74-228 (272)
24 PRK15451 tRNA cmo(5)U34 methyl 99.8 1.8E-19 4E-24 161.8 13.6 169 177-349 56-244 (247)
25 PF08241 Methyltransf_11: Meth 99.8 1.4E-19 3E-24 137.6 10.9 95 182-283 1-95 (95)
26 PRK08317 hypothetical protein; 99.8 2E-18 4.4E-23 154.0 20.0 164 167-336 9-176 (241)
27 TIGR00740 methyltransferase, p 99.8 3.7E-19 8E-24 159.2 13.5 154 177-334 53-225 (239)
28 PF13847 Methyltransf_31: Meth 99.8 7.4E-19 1.6E-23 146.2 12.4 145 177-328 3-152 (152)
29 KOG1270 Methyltransferases [Co 99.8 4.4E-19 9.4E-24 153.9 11.2 150 178-333 90-246 (282)
30 smart00828 PKS_MT Methyltransf 99.8 6.7E-18 1.5E-22 149.6 17.6 146 179-338 1-146 (224)
31 PRK11207 tellurite resistance 99.8 9.9E-18 2.2E-22 145.4 16.9 145 168-334 21-168 (197)
32 PRK01683 trans-aconitate 2-met 99.8 8.6E-18 1.9E-22 152.1 15.8 155 167-331 21-182 (258)
33 COG2230 Cfa Cyclopropane fatty 99.8 2E-17 4.4E-22 147.7 17.6 163 166-338 61-225 (283)
34 PF02353 CMAS: Mycolic acid cy 99.8 1.9E-17 4.1E-22 149.9 17.6 164 166-338 51-219 (273)
35 KOG4300 Predicted methyltransf 99.8 1.6E-17 3.5E-22 138.8 14.8 161 166-335 65-231 (252)
36 TIGR00477 tehB tellurite resis 99.8 1.9E-17 4.2E-22 143.3 15.7 146 168-335 21-168 (195)
37 TIGR02072 BioC biotin biosynth 99.8 1.8E-17 4E-22 147.9 15.8 141 177-334 34-174 (240)
38 PF12847 Methyltransf_18: Meth 99.8 5.3E-18 1.1E-22 133.4 10.3 106 177-285 1-111 (112)
39 PRK06202 hypothetical protein; 99.7 2.8E-17 6.1E-22 146.4 14.7 159 173-341 56-227 (232)
40 TIGR02716 C20_methyl_CrtF C-20 99.7 1.4E-16 3.1E-21 147.7 19.7 163 166-335 138-305 (306)
41 PRK12335 tellurite resistance 99.7 1.5E-16 3.3E-21 146.0 17.6 136 177-334 120-257 (287)
42 TIGR02021 BchM-ChlM magnesium 99.7 1.3E-16 2.9E-21 140.8 15.8 157 167-335 43-205 (219)
43 PRK00107 gidB 16S rRNA methylt 99.7 1E-15 2.2E-20 131.0 19.7 122 178-334 46-167 (187)
44 PRK05134 bifunctional 3-demeth 99.7 4.5E-16 9.8E-21 138.7 16.7 160 167-335 38-204 (233)
45 PF07021 MetW: Methionine bios 99.7 1.3E-16 2.8E-21 134.0 10.8 153 167-336 5-167 (193)
46 PLN02585 magnesium protoporphy 99.7 9.9E-16 2.2E-20 141.2 17.3 161 166-336 130-299 (315)
47 TIGR01983 UbiG ubiquinone bios 99.7 1.2E-15 2.5E-20 135.2 17.2 150 177-335 45-202 (224)
48 PF13649 Methyltransf_25: Meth 99.7 6.3E-17 1.4E-21 125.0 7.8 95 181-279 1-101 (101)
49 TIGR02081 metW methionine bios 99.7 4.9E-16 1.1E-20 134.6 14.0 150 167-335 5-166 (194)
50 PLN02232 ubiquinone biosynthes 99.7 2.9E-16 6.2E-21 131.6 11.9 142 205-346 1-159 (160)
51 PF08242 Methyltransf_12: Meth 99.7 9.5E-18 2.1E-22 129.1 2.5 97 182-281 1-99 (99)
52 PRK08287 cobalt-precorrin-6Y C 99.7 6.9E-15 1.5E-19 126.6 19.5 134 166-333 20-153 (187)
53 TIGR00537 hemK_rel_arch HemK-r 99.7 3.1E-15 6.7E-20 127.9 16.9 138 168-339 10-168 (179)
54 COG4106 Tam Trans-aconitate me 99.7 3.6E-16 7.8E-21 131.8 9.9 155 167-331 20-181 (257)
55 PRK07580 Mg-protoporphyrin IX 99.7 3.1E-15 6.7E-20 133.0 16.5 149 176-336 62-214 (230)
56 TIGR03840 TMPT_Se_Te thiopurin 99.7 4.4E-15 9.4E-20 129.9 16.9 140 176-333 33-184 (213)
57 PLN02336 phosphoethanolamine N 99.7 1.7E-15 3.6E-20 148.9 16.0 149 167-333 27-179 (475)
58 PF05401 NodS: Nodulation prot 99.7 5.7E-15 1.2E-19 124.3 16.0 154 170-349 36-198 (201)
59 TIGR00138 gidB 16S rRNA methyl 99.6 5.8E-15 1.2E-19 126.0 15.9 100 177-284 42-141 (181)
60 PRK04266 fibrillarin; Provisio 99.6 1.2E-14 2.5E-19 128.2 17.3 148 172-347 67-225 (226)
61 PRK11705 cyclopropane fatty ac 99.6 4.7E-15 1E-19 140.9 15.9 157 166-339 156-315 (383)
62 PRK06922 hypothetical protein; 99.6 3E-15 6.4E-20 147.0 13.3 107 177-287 418-539 (677)
63 PRK00121 trmB tRNA (guanine-N( 99.6 5E-15 1.1E-19 128.9 13.0 108 177-287 40-158 (202)
64 TIGR03587 Pse_Me-ase pseudamin 99.6 8.6E-15 1.9E-19 127.4 14.2 102 177-289 43-146 (204)
65 TIGR02469 CbiT precorrin-6Y C5 99.6 1.6E-14 3.4E-19 115.4 14.1 114 167-286 9-123 (124)
66 PLN03075 nicotianamine synthas 99.6 4.6E-14 9.9E-19 127.7 18.3 147 177-349 123-276 (296)
67 PF03848 TehB: Tellurite resis 99.6 1.1E-14 2.4E-19 124.0 13.4 143 169-333 22-166 (192)
68 PRK14968 putative methyltransf 99.6 7E-14 1.5E-18 120.2 17.9 150 167-346 13-187 (188)
69 PRK00517 prmA ribosomal protei 99.6 3.8E-14 8.2E-19 127.6 16.9 133 176-348 118-250 (250)
70 PRK13255 thiopurine S-methyltr 99.6 4.1E-14 8.8E-19 124.2 16.4 142 174-333 34-187 (218)
71 PRK00377 cbiT cobalt-precorrin 99.6 1.8E-13 3.9E-18 118.9 19.4 114 168-286 31-146 (198)
72 KOG1271 Methyltransferases [Ge 99.6 3.7E-14 8.1E-19 116.4 14.0 132 178-338 68-207 (227)
73 PRK14967 putative methyltransf 99.6 4E-14 8.7E-19 125.3 15.4 165 174-348 33-223 (223)
74 COG4976 Predicted methyltransf 99.6 4.3E-15 9.4E-20 126.3 8.1 171 156-348 105-286 (287)
75 smart00138 MeTrc Methyltransfe 99.6 2E-14 4.3E-19 130.1 12.4 109 177-285 99-242 (264)
76 PRK13944 protein-L-isoaspartat 99.6 5.4E-14 1.2E-18 122.7 14.5 112 166-285 61-173 (205)
77 COG2264 PrmA Ribosomal protein 99.6 1.5E-13 3.3E-18 123.9 17.0 154 159-348 146-300 (300)
78 PRK13942 protein-L-isoaspartat 99.5 1.3E-13 2.7E-18 121.0 14.4 111 165-284 64-175 (212)
79 TIGR03534 RF_mod_PrmC protein- 99.5 3.6E-13 7.8E-18 121.2 17.1 139 165-335 76-240 (251)
80 TIGR00091 tRNA (guanine-N(7)-) 99.5 6.1E-14 1.3E-18 121.4 11.4 108 178-288 17-135 (194)
81 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.3E-13 2.8E-18 129.3 13.8 118 168-288 113-238 (390)
82 COG2242 CobL Precorrin-6B meth 99.5 1.4E-12 3.1E-17 109.0 18.3 136 165-333 22-158 (187)
83 PRK09489 rsmC 16S ribosomal RN 99.5 9.8E-13 2.1E-17 123.0 19.5 114 167-286 186-304 (342)
84 PTZ00146 fibrillarin; Provisio 99.5 1.2E-12 2.7E-17 118.0 18.7 141 173-338 128-273 (293)
85 PRK15001 SAM-dependent 23S rib 99.5 6.9E-13 1.5E-17 124.9 17.8 119 166-285 217-340 (378)
86 KOG2361 Predicted methyltransf 99.5 3.5E-14 7.7E-19 121.9 8.2 150 179-333 73-234 (264)
87 PF05175 MTS: Methyltransferas 99.5 2.1E-13 4.6E-18 115.5 12.5 116 167-286 21-141 (170)
88 TIGR00080 pimt protein-L-isoas 99.5 2.7E-13 5.8E-18 119.3 13.6 111 166-285 66-177 (215)
89 PF06325 PrmA: Ribosomal prote 99.5 2.3E-13 5.1E-18 123.9 13.4 145 165-348 151-295 (295)
90 PRK07402 precorrin-6B methylas 99.5 9.3E-13 2E-17 114.2 15.2 115 166-287 29-144 (196)
91 TIGR01177 conserved hypothetic 99.5 8.2E-13 1.8E-17 123.6 15.7 119 164-287 169-296 (329)
92 PRK11188 rrmJ 23S rRNA methylt 99.5 6.1E-13 1.3E-17 116.3 13.6 99 176-288 50-168 (209)
93 PRK14966 unknown domain/N5-glu 99.5 2.5E-12 5.3E-17 121.4 18.4 153 164-349 240-420 (423)
94 TIGR00406 prmA ribosomal prote 99.5 1.1E-12 2.4E-17 120.4 15.4 127 177-338 159-285 (288)
95 TIGR00536 hemK_fam HemK family 99.5 2.5E-12 5.5E-17 117.9 17.5 139 179-347 116-282 (284)
96 TIGR03533 L3_gln_methyl protei 99.5 4E-12 8.7E-17 116.3 18.7 137 172-339 116-277 (284)
97 PF00891 Methyltransf_2: O-met 99.5 1.4E-12 3E-17 116.8 15.4 145 167-325 90-241 (241)
98 PRK09328 N5-glutamine S-adenos 99.5 5.2E-12 1.1E-16 115.3 19.1 153 163-346 94-274 (275)
99 KOG1541 Predicted protein carb 99.5 2.7E-13 5.8E-18 114.8 9.6 111 167-287 38-162 (270)
100 PHA03411 putative methyltransf 99.5 2.3E-12 4.9E-17 115.0 16.0 144 157-331 46-209 (279)
101 PRK13256 thiopurine S-methyltr 99.5 3.3E-12 7.1E-17 111.9 16.3 115 173-289 39-167 (226)
102 PF13659 Methyltransf_26: Meth 99.5 4.5E-13 9.8E-18 106.0 9.9 107 178-287 1-117 (117)
103 PRK00312 pcm protein-L-isoaspa 99.4 2.5E-12 5.5E-17 112.9 15.0 111 165-286 66-176 (212)
104 PF06080 DUF938: Protein of un 99.4 7.8E-12 1.7E-16 106.7 16.5 170 164-337 13-193 (204)
105 PRK11805 N5-glutamine S-adenos 99.4 1E-11 2.2E-16 114.8 18.5 132 178-340 134-290 (307)
106 PF05148 Methyltransf_8: Hypot 99.4 3.5E-12 7.6E-17 108.2 13.1 156 144-349 42-199 (219)
107 PF05724 TPMT: Thiopurine S-me 99.4 7.4E-12 1.6E-16 109.7 14.9 150 167-334 27-188 (218)
108 KOG3010 Methyltransferase [Gen 99.4 2.5E-12 5.5E-17 110.6 11.5 119 163-288 21-140 (261)
109 TIGR03438 probable methyltrans 99.4 8.6E-12 1.9E-16 115.2 15.3 110 177-288 63-180 (301)
110 PF12147 Methyltransf_20: Puta 99.4 5.6E-11 1.2E-15 105.5 18.0 164 175-347 133-311 (311)
111 COG2813 RsmC 16S RNA G1207 met 99.4 6.1E-11 1.3E-15 106.6 18.5 118 164-286 145-267 (300)
112 COG2518 Pcm Protein-L-isoaspar 99.4 1.4E-11 3E-16 105.3 13.1 111 165-286 60-170 (209)
113 PRK10901 16S rRNA methyltransf 99.4 2.7E-11 5.8E-16 117.3 16.8 119 166-288 233-375 (427)
114 COG4123 Predicted O-methyltran 99.4 2E-11 4.4E-16 107.4 14.3 137 168-333 35-191 (248)
115 PF01135 PCMT: Protein-L-isoas 99.4 5.6E-12 1.2E-16 109.6 10.8 113 165-286 60-173 (209)
116 COG2519 GCD14 tRNA(1-methylade 99.4 3E-11 6.6E-16 105.4 15.2 115 166-288 83-198 (256)
117 KOG3045 Predicted RNA methylas 99.3 3.5E-11 7.5E-16 104.4 14.9 172 126-349 131-305 (325)
118 TIGR03704 PrmC_rel_meth putati 99.3 7.3E-11 1.6E-15 106.1 17.1 137 166-335 74-239 (251)
119 cd02440 AdoMet_MTases S-adenos 99.3 1.7E-11 3.7E-16 93.4 11.2 101 180-284 1-103 (107)
120 PRK13943 protein-L-isoaspartat 99.3 1.7E-11 3.7E-16 113.4 13.0 111 166-285 69-180 (322)
121 TIGR00563 rsmB ribosomal RNA s 99.3 1.9E-11 4.1E-16 118.3 13.5 124 164-289 225-372 (426)
122 PRK01544 bifunctional N5-gluta 99.3 5.5E-11 1.2E-15 117.1 16.7 127 178-334 139-291 (506)
123 PRK14901 16S rRNA methyltransf 99.3 2.7E-11 5.8E-16 117.6 14.0 123 163-288 238-387 (434)
124 PF05891 Methyltransf_PK: AdoM 99.3 1.6E-11 3.5E-16 105.3 10.5 144 178-336 56-201 (218)
125 COG2890 HemK Methylase of poly 99.3 1.6E-10 3.5E-15 105.3 17.3 137 180-348 113-277 (280)
126 TIGR00438 rrmJ cell division p 99.3 4.9E-11 1.1E-15 102.7 12.8 106 168-287 23-148 (188)
127 PF08704 GCD14: tRNA methyltra 99.3 1.2E-10 2.7E-15 103.3 15.5 140 163-335 26-170 (247)
128 PF05219 DREV: DREV methyltran 99.3 2.7E-11 5.8E-16 106.3 10.5 97 177-287 94-190 (265)
129 KOG2940 Predicted methyltransf 99.3 1.2E-11 2.6E-16 105.4 7.6 153 178-336 73-227 (325)
130 PF03291 Pox_MCEL: mRNA cappin 99.3 7.1E-11 1.5E-15 109.7 12.7 111 177-288 62-189 (331)
131 smart00650 rADc Ribosomal RNA 99.2 1.5E-10 3.3E-15 97.9 13.1 109 167-285 3-113 (169)
132 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.1E-10 2.3E-15 105.9 12.9 116 170-288 64-202 (264)
133 PRK14903 16S rRNA methyltransf 99.2 9.3E-11 2E-15 113.4 13.2 121 166-289 226-370 (431)
134 PRK04457 spermidine synthase; 99.2 1.2E-10 2.6E-15 105.3 11.7 108 177-287 66-179 (262)
135 PRK14904 16S rRNA methyltransf 99.2 2.3E-10 5E-15 111.4 14.3 118 168-289 241-381 (445)
136 PF02390 Methyltransf_4: Putat 99.2 1.6E-10 3.4E-15 99.8 11.7 101 180-288 20-136 (195)
137 PRK14902 16S rRNA methyltransf 99.2 2E-10 4.4E-15 111.8 13.7 118 166-287 239-381 (444)
138 PRK01581 speE spermidine synth 99.2 2.8E-10 6.1E-15 105.5 13.0 148 177-347 150-313 (374)
139 PRK00811 spermidine synthase; 99.2 1.7E-10 3.8E-15 105.5 11.4 109 177-285 76-191 (283)
140 KOG2899 Predicted methyltransf 99.2 1.2E-10 2.6E-15 100.2 9.3 149 177-333 58-254 (288)
141 PF11968 DUF3321: Putative met 99.2 5.5E-10 1.2E-14 95.6 13.2 130 179-348 53-193 (219)
142 KOG1975 mRNA cap methyltransfe 99.2 1.3E-10 2.8E-15 103.9 9.1 112 177-289 117-241 (389)
143 PLN02672 methionine S-methyltr 99.2 8.2E-10 1.8E-14 115.6 16.1 130 178-335 119-302 (1082)
144 TIGR00417 speE spermidine synt 99.1 1.4E-09 3.1E-14 98.9 15.1 107 178-284 73-185 (270)
145 KOG3178 Hydroxyindole-O-methyl 99.1 1E-09 2.2E-14 100.2 12.9 147 179-337 179-331 (342)
146 COG0220 Predicted S-adenosylme 99.1 7.9E-10 1.7E-14 97.0 11.2 103 178-288 49-167 (227)
147 PRK03612 spermidine synthase; 99.1 8.2E-10 1.8E-14 109.3 12.4 109 177-285 297-415 (521)
148 PHA03412 putative methyltransf 99.1 1.3E-09 2.8E-14 95.3 11.9 114 156-280 30-158 (241)
149 PLN02781 Probable caffeoyl-CoA 99.1 1.1E-09 2.4E-14 97.4 11.2 116 167-287 58-180 (234)
150 PRK11783 rlmL 23S rRNA m(2)G24 99.1 1.6E-09 3.5E-14 110.9 14.0 107 177-285 538-656 (702)
151 PRK13168 rumA 23S rRNA m(5)U19 99.1 2.4E-09 5.2E-14 104.3 14.6 114 163-285 283-400 (443)
152 PRK15128 23S rRNA m(5)C1962 me 99.1 1.5E-09 3.2E-14 103.5 12.6 108 177-286 220-340 (396)
153 PLN02366 spermidine synthase 99.0 2.4E-09 5.2E-14 98.7 11.7 108 177-284 91-205 (308)
154 PRK10909 rsmD 16S rRNA m(2)G96 99.0 8.2E-09 1.8E-13 89.2 13.4 120 163-287 38-161 (199)
155 PRK03522 rumB 23S rRNA methylu 99.0 3.8E-09 8.2E-14 98.3 11.7 113 165-285 161-274 (315)
156 TIGR00479 rumA 23S rRNA (uraci 99.0 8.4E-09 1.8E-13 100.3 13.9 113 164-284 279-395 (431)
157 COG2521 Predicted archaeal met 99.0 4.4E-09 9.6E-14 90.2 10.1 155 170-348 127-287 (287)
158 PF07942 N2227: N2227-like pro 99.0 2.8E-08 6E-13 89.1 15.7 158 166-336 41-242 (270)
159 COG2263 Predicted RNA methylas 98.9 1E-08 2.2E-13 85.7 10.9 76 174-257 42-117 (198)
160 COG4122 Predicted O-methyltran 98.9 9.6E-09 2.1E-13 89.3 10.9 117 167-289 49-170 (219)
161 PRK14896 ksgA 16S ribosomal RN 98.9 9.6E-09 2.1E-13 92.9 11.3 87 163-258 15-101 (258)
162 KOG1331 Predicted methyltransf 98.9 3.6E-09 7.7E-14 93.8 7.9 98 178-288 46-146 (293)
163 PRK10611 chemotaxis methyltran 98.9 1.2E-08 2.7E-13 92.7 11.7 107 178-284 116-261 (287)
164 PRK00274 ksgA 16S ribosomal RN 98.9 7.1E-09 1.5E-13 94.5 10.1 87 162-256 27-113 (272)
165 COG3963 Phospholipid N-methylt 98.9 3.5E-08 7.5E-13 80.5 12.6 127 154-288 25-159 (194)
166 PF10294 Methyltransf_16: Puta 98.9 2.2E-08 4.7E-13 84.9 11.5 113 175-288 43-159 (173)
167 PLN02476 O-methyltransferase 98.9 2.5E-08 5.4E-13 90.1 12.2 116 167-287 108-230 (278)
168 COG1041 Predicted DNA modifica 98.9 2.4E-08 5.2E-13 91.6 11.6 119 163-286 183-311 (347)
169 PF01739 CheR: CheR methyltran 98.9 1.2E-08 2.7E-13 87.8 9.0 108 177-284 31-174 (196)
170 KOG2904 Predicted methyltransf 98.8 3.7E-08 7.9E-13 86.6 11.7 123 163-287 131-287 (328)
171 PF03141 Methyltransf_29: Puta 98.8 1.4E-09 3E-14 103.5 3.2 114 163-288 99-222 (506)
172 KOG1661 Protein-L-isoaspartate 98.8 2.3E-08 5E-13 84.6 10.1 111 166-284 73-192 (237)
173 TIGR00755 ksgA dimethyladenosi 98.8 6.3E-08 1.4E-12 87.3 13.4 85 163-256 15-102 (253)
174 PF01170 UPF0020: Putative RNA 98.8 5.1E-08 1.1E-12 83.1 11.9 117 164-283 15-148 (179)
175 PF01596 Methyltransf_3: O-met 98.8 1.8E-08 3.9E-13 87.4 9.2 107 176-287 44-157 (205)
176 PRK11727 23S rRNA mA1618 methy 98.8 2.3E-07 5E-12 85.7 16.6 147 177-334 114-290 (321)
177 KOG3191 Predicted N6-DNA-methy 98.8 4.2E-07 9.2E-12 75.3 16.1 128 175-333 41-190 (209)
178 PF05185 PRMT5: PRMT5 arginine 98.8 6.9E-08 1.5E-12 93.4 13.1 102 178-282 187-294 (448)
179 PRK04338 N(2),N(2)-dimethylgua 98.8 1E-07 2.2E-12 90.6 13.6 101 178-285 58-158 (382)
180 TIGR02085 meth_trns_rumB 23S r 98.8 4.2E-08 9.1E-13 93.4 11.0 112 166-285 222-334 (374)
181 PTZ00338 dimethyladenosine tra 98.8 4.2E-08 9.1E-13 90.0 10.5 87 163-255 22-108 (294)
182 PRK01544 bifunctional N5-gluta 98.8 3.4E-08 7.3E-13 97.5 10.4 103 177-287 347-464 (506)
183 PF04672 Methyltransf_19: S-ad 98.7 2E-07 4.4E-12 83.0 13.0 147 177-333 68-233 (267)
184 KOG1499 Protein arginine N-met 98.7 6.1E-08 1.3E-12 88.6 9.8 104 175-282 58-164 (346)
185 KOG1269 SAM-dependent methyltr 98.7 4E-08 8.6E-13 92.1 8.4 110 176-288 109-218 (364)
186 PLN02589 caffeoyl-CoA O-methyl 98.7 1.2E-07 2.6E-12 84.5 9.9 115 167-286 69-191 (247)
187 TIGR00478 tly hemolysin TlyA f 98.7 4E-07 8.7E-12 80.2 12.7 133 176-336 74-217 (228)
188 PRK04148 hypothetical protein; 98.6 6.2E-07 1.3E-11 71.8 11.7 107 166-289 5-113 (134)
189 TIGR00095 RNA methyltransferas 98.6 6.9E-07 1.5E-11 76.8 12.9 107 177-287 49-161 (189)
190 PLN02823 spermine synthase 98.6 2.9E-07 6.4E-12 85.8 10.7 107 177-284 103-219 (336)
191 COG0421 SpeE Spermidine syntha 98.6 4.3E-07 9.4E-12 82.4 11.5 108 174-284 74-189 (282)
192 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 4E-07 8.6E-12 81.3 10.5 146 177-335 56-238 (256)
193 PF02475 Met_10: Met-10+ like- 98.6 4.1E-07 8.8E-12 78.5 9.9 105 168-281 94-198 (200)
194 KOG3420 Predicted RNA methylas 98.6 1.5E-07 3.3E-12 74.9 6.5 87 167-258 38-124 (185)
195 COG0030 KsgA Dimethyladenosine 98.5 5.8E-07 1.3E-11 80.0 10.4 86 163-255 16-102 (259)
196 TIGR02143 trmA_only tRNA (urac 98.5 4.4E-07 9.5E-12 85.7 10.2 112 164-286 185-312 (353)
197 COG1352 CheR Methylase of chem 98.5 1.2E-06 2.5E-11 78.9 12.4 107 178-284 97-240 (268)
198 KOG2915 tRNA(1-methyladenosine 98.5 2.9E-06 6.3E-11 74.8 14.4 111 166-283 94-207 (314)
199 PF02384 N6_Mtase: N-6 DNA Met 98.5 4.1E-07 8.9E-12 84.6 9.8 130 157-287 26-185 (311)
200 PRK11933 yebU rRNA (cytosine-C 98.5 1.3E-06 2.8E-11 85.0 13.5 117 169-288 103-245 (470)
201 COG1092 Predicted SAM-dependen 98.5 4.8E-07 1E-11 85.5 9.7 108 178-287 218-338 (393)
202 PRK05031 tRNA (uracil-5-)-meth 98.5 5.3E-07 1.1E-11 85.5 9.9 113 163-286 193-321 (362)
203 PF02527 GidB: rRNA small subu 98.5 2.6E-06 5.7E-11 72.6 12.8 97 180-284 51-147 (184)
204 KOG1500 Protein arginine N-met 98.5 1.3E-06 2.9E-11 78.9 10.5 104 175-283 175-280 (517)
205 COG0500 SmtA SAM-dependent met 98.5 4E-06 8.7E-11 68.4 12.8 104 181-290 52-160 (257)
206 PF04816 DUF633: Family of unk 98.4 8.5E-06 1.8E-10 70.7 14.6 134 181-347 1-139 (205)
207 PF09243 Rsm22: Mitochondrial 98.4 3E-06 6.4E-11 77.2 12.1 117 166-288 22-142 (274)
208 PRK00536 speE spermidine synth 98.4 2.4E-06 5.1E-11 76.7 11.0 99 177-285 72-171 (262)
209 KOG3987 Uncharacterized conser 98.4 1.3E-07 2.7E-12 79.9 2.3 94 178-285 113-207 (288)
210 PF10672 Methyltrans_SAM: S-ad 98.4 2E-06 4.3E-11 78.2 10.3 109 177-287 123-240 (286)
211 PF03602 Cons_hypoth95: Conser 98.4 1E-06 2.2E-11 75.2 7.6 122 163-288 26-156 (183)
212 PF01564 Spermine_synth: Sperm 98.4 1.4E-06 3.1E-11 78.0 8.5 111 177-287 76-193 (246)
213 TIGR03439 methyl_EasF probable 98.4 1.5E-05 3.3E-10 73.8 15.4 105 177-285 76-197 (319)
214 PRK00050 16S rRNA m(4)C1402 me 98.4 1.5E-06 3.2E-11 79.4 8.4 95 166-265 8-109 (296)
215 KOG0820 Ribosomal RNA adenine 98.4 3.2E-06 7E-11 74.5 10.0 85 165-255 46-130 (315)
216 COG2265 TrmA SAM-dependent met 98.3 1.9E-06 4.1E-11 83.0 9.1 110 163-286 279-397 (432)
217 PF08123 DOT1: Histone methyla 98.3 1.8E-06 4E-11 74.9 7.4 117 167-284 32-157 (205)
218 COG2520 Predicted methyltransf 98.3 9E-06 1.9E-10 75.4 11.7 115 166-289 179-293 (341)
219 COG0293 FtsJ 23S rRNA methylas 98.2 1.7E-05 3.7E-10 68.1 11.7 101 175-289 43-163 (205)
220 COG0357 GidB Predicted S-adeno 98.2 5.1E-05 1.1E-09 65.9 14.8 127 178-335 68-194 (215)
221 COG0116 Predicted N6-adenine-s 98.2 2.7E-05 5.8E-10 72.8 13.0 138 145-286 161-345 (381)
222 COG0742 N6-adenine-specific me 98.2 3.4E-05 7.4E-10 65.2 12.5 123 162-287 26-156 (187)
223 TIGR02987 met_A_Alw26 type II 98.2 1.5E-05 3.2E-10 79.6 11.9 96 157-255 4-119 (524)
224 KOG1663 O-methyltransferase [S 98.2 2.4E-05 5.2E-10 67.6 11.4 114 166-285 62-183 (237)
225 KOG2352 Predicted spermine/spe 98.2 1.1E-05 2.3E-10 77.1 10.1 102 180-286 51-162 (482)
226 PRK11783 rlmL 23S rRNA m(2)G24 98.2 2.8E-05 6.2E-10 80.0 13.4 123 163-287 175-349 (702)
227 COG0144 Sun tRNA and rRNA cyto 98.1 4.1E-05 8.9E-10 72.3 13.4 121 166-289 145-292 (355)
228 PF00398 RrnaAD: Ribosomal RNA 98.1 1.3E-05 2.9E-10 72.6 9.4 101 163-273 16-119 (262)
229 COG4262 Predicted spermidine s 98.1 3.7E-05 8E-10 70.6 11.9 144 178-348 290-452 (508)
230 TIGR00308 TRM1 tRNA(guanine-26 98.1 6E-05 1.3E-09 71.5 13.8 102 178-286 45-148 (374)
231 KOG3201 Uncharacterized conser 98.1 3.8E-06 8.1E-11 68.3 4.5 123 166-288 18-143 (201)
232 PF01728 FtsJ: FtsJ-like methy 98.1 3.1E-06 6.8E-11 72.2 4.1 97 177-287 23-141 (181)
233 COG4798 Predicted methyltransf 98.1 3.1E-05 6.7E-10 65.1 9.5 151 169-333 40-202 (238)
234 PF09445 Methyltransf_15: RNA 98.1 6.6E-06 1.4E-10 68.3 5.5 72 180-255 2-76 (163)
235 PF05958 tRNA_U5-meth_tr: tRNA 98.1 1.6E-05 3.5E-10 75.1 8.7 74 163-242 183-256 (352)
236 KOG3115 Methyltransferase-like 98.0 2.2E-05 4.8E-10 66.3 7.5 109 178-288 61-186 (249)
237 KOG1709 Guanidinoacetate methy 98.0 3.4E-05 7.3E-10 65.9 8.6 111 167-283 92-204 (271)
238 KOG2798 Putative trehalase [Ca 98.0 0.00013 2.8E-09 65.8 12.4 161 163-335 132-336 (369)
239 PRK11760 putative 23S rRNA C24 98.0 7.9E-05 1.7E-09 68.7 11.1 87 176-278 210-296 (357)
240 PF13679 Methyltransf_32: Meth 98.0 0.0001 2.2E-09 60.3 10.7 106 176-288 24-134 (141)
241 COG2835 Uncharacterized conser 97.9 4.5E-06 9.8E-11 55.9 1.8 46 67-121 4-49 (60)
242 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.9 8.7E-05 1.9E-09 67.9 10.3 119 167-288 75-222 (283)
243 COG3897 Predicted methyltransf 97.9 7.2E-05 1.6E-09 63.1 8.7 113 167-288 69-182 (218)
244 PRK11827 hypothetical protein; 97.9 7E-06 1.5E-10 55.6 2.0 45 68-121 5-49 (60)
245 COG4627 Uncharacterized protei 97.9 1.3E-06 2.8E-11 70.5 -2.0 59 230-288 29-89 (185)
246 COG2384 Predicted SAM-dependen 97.8 0.0011 2.5E-08 57.1 15.0 134 166-333 7-140 (226)
247 TIGR01444 fkbM_fam methyltrans 97.8 9.4E-05 2E-09 60.3 7.9 59 180-241 1-59 (143)
248 TIGR00006 S-adenosyl-methyltra 97.8 0.00016 3.5E-09 66.3 10.0 90 164-257 7-101 (305)
249 PF03059 NAS: Nicotianamine sy 97.7 0.00038 8.3E-09 62.9 11.5 108 178-286 121-231 (276)
250 KOG2187 tRNA uracil-5-methyltr 97.7 0.0002 4.4E-09 68.8 9.4 76 162-242 368-443 (534)
251 COG1889 NOP1 Fibrillarin-like 97.7 0.0037 8E-08 53.2 15.8 147 174-347 73-229 (231)
252 COG1189 Predicted rRNA methyla 97.7 0.001 2.2E-08 58.2 12.5 147 168-335 70-223 (245)
253 PF01269 Fibrillarin: Fibrilla 97.7 0.00092 2E-08 57.9 12.2 150 173-347 69-227 (229)
254 KOG2730 Methylase [General fun 97.7 5.8E-05 1.3E-09 64.7 4.6 91 162-256 78-173 (263)
255 PF07091 FmrO: Ribosomal RNA m 97.6 0.00072 1.6E-08 59.7 11.4 149 163-334 93-242 (251)
256 COG4076 Predicted RNA methylas 97.6 0.00013 2.8E-09 61.0 6.0 98 179-283 34-133 (252)
257 PF03966 Trm112p: Trm112p-like 97.6 3E-05 6.5E-10 54.8 1.4 47 67-113 3-68 (68)
258 KOG4589 Cell division protein 97.4 0.0014 3.1E-08 54.9 9.6 101 175-289 67-188 (232)
259 PF13578 Methyltransf_24: Meth 97.3 8.2E-05 1.8E-09 57.5 1.1 100 182-285 1-105 (106)
260 PLN02668 indole-3-acetate carb 97.3 0.0087 1.9E-07 56.8 14.3 156 178-333 64-305 (386)
261 PF05971 Methyltransf_10: Prot 97.2 0.013 2.8E-07 53.6 14.7 84 178-262 103-191 (299)
262 PF03141 Methyltransf_29: Puta 97.1 0.0029 6.4E-08 61.0 9.5 97 177-286 365-468 (506)
263 TIGR00027 mthyl_TIGR00027 meth 97.0 0.053 1.1E-06 49.0 16.0 164 168-334 73-248 (260)
264 PF03492 Methyltransf_7: SAM d 97.0 0.035 7.6E-07 52.1 15.3 154 177-330 16-246 (334)
265 PF01795 Methyltransf_5: MraW 97.0 0.0018 3.8E-08 59.5 6.3 86 166-255 9-100 (310)
266 PF06962 rRNA_methylase: Putat 97.0 0.0048 1E-07 49.8 8.0 84 203-288 1-95 (140)
267 KOG1122 tRNA and rRNA cytosine 96.9 0.013 2.7E-07 55.4 11.2 112 173-288 237-374 (460)
268 PF06859 Bin3: Bicoid-interact 96.9 0.00038 8.2E-09 53.3 0.9 82 248-334 1-90 (110)
269 PF04989 CmcI: Cephalosporin h 96.8 0.0023 5.1E-08 55.1 5.6 106 178-288 33-150 (206)
270 KOG4058 Uncharacterized conser 96.8 0.015 3.3E-07 46.9 9.3 117 161-285 56-172 (199)
271 PRK10742 putative methyltransf 96.7 0.01 2.2E-07 52.6 9.1 92 167-260 76-176 (250)
272 PF01861 DUF43: Protein of unk 96.7 0.12 2.6E-06 45.6 15.0 101 177-283 44-147 (243)
273 COG0286 HsdM Type I restrictio 96.6 0.03 6.4E-07 55.4 12.6 129 157-287 166-328 (489)
274 COG0275 Predicted S-adenosylme 96.6 0.02 4.4E-07 51.9 10.0 88 164-255 10-103 (314)
275 COG5459 Predicted rRNA methyla 96.5 0.01 2.2E-07 54.7 7.3 118 167-288 103-228 (484)
276 COG1064 AdhP Zn-dependent alco 96.4 0.035 7.5E-07 51.7 10.5 98 174-288 163-262 (339)
277 KOG1099 SAM-dependent methyltr 96.3 0.0098 2.1E-07 51.6 5.8 97 179-289 43-167 (294)
278 PF11599 AviRa: RRNA methyltra 96.2 0.066 1.4E-06 46.2 10.2 118 166-283 40-212 (246)
279 KOG2793 Putative N2,N2-dimethy 96.0 0.07 1.5E-06 47.5 9.9 111 177-289 86-203 (248)
280 KOG1562 Spermidine synthase [A 95.9 0.028 6E-07 50.8 7.0 104 177-285 121-236 (337)
281 COG1063 Tdh Threonine dehydrog 95.8 0.24 5.1E-06 46.9 13.5 99 176-289 167-273 (350)
282 PF02005 TRM: N2,N2-dimethylgu 95.8 0.045 9.7E-07 52.2 8.5 105 178-287 50-156 (377)
283 PRK09424 pntA NAD(P) transhydr 95.8 0.13 2.8E-06 50.9 12.0 101 175-286 162-286 (509)
284 PF02636 Methyltransf_28: Puta 95.7 0.035 7.6E-07 49.9 7.3 46 178-223 19-72 (252)
285 KOG2198 tRNA cytosine-5-methyl 95.7 0.13 2.9E-06 48.0 11.0 115 172-289 150-300 (375)
286 PF07757 AdoMet_MTase: Predict 95.7 0.015 3.2E-07 44.5 3.9 33 176-210 57-89 (112)
287 PF13719 zinc_ribbon_5: zinc-r 95.6 0.0053 1.2E-07 37.6 1.1 35 71-109 2-36 (37)
288 PF04445 SAM_MT: Putative SAM- 95.6 0.041 9E-07 48.5 7.0 91 168-260 64-163 (234)
289 PF03269 DUF268: Caenorhabditi 95.4 0.012 2.5E-07 48.4 2.7 100 178-289 2-115 (177)
290 COG1867 TRM1 N2,N2-dimethylgua 95.4 0.23 5E-06 46.4 11.4 105 178-289 53-158 (380)
291 cd08283 FDH_like_1 Glutathione 95.4 0.21 4.6E-06 47.8 11.9 105 173-286 180-307 (386)
292 PRK11524 putative methyltransf 95.3 0.067 1.5E-06 49.0 7.7 59 162-223 194-252 (284)
293 PRK00420 hypothetical protein; 95.2 0.011 2.3E-07 45.8 1.7 30 72-111 24-53 (112)
294 KOG0822 Protein kinase inhibit 95.2 0.1 2.2E-06 50.8 8.4 102 179-285 369-478 (649)
295 PHA01634 hypothetical protein 95.1 0.17 3.7E-06 40.0 8.1 47 177-224 28-74 (156)
296 PRK01747 mnmC bifunctional tRN 95.1 0.12 2.5E-06 53.4 9.3 127 178-334 58-225 (662)
297 PRK13699 putative methylase; P 95.0 0.11 2.5E-06 45.8 7.9 62 160-224 147-208 (227)
298 PF01555 N6_N4_Mtase: DNA meth 94.9 0.078 1.7E-06 46.3 6.8 57 160-219 175-231 (231)
299 KOG1596 Fibrillarin and relate 94.7 0.17 3.6E-06 44.5 7.6 104 173-286 152-262 (317)
300 PF13717 zinc_ribbon_4: zinc-r 94.6 0.017 3.8E-07 35.1 1.2 34 71-108 2-35 (36)
301 COG3315 O-Methyltransferase in 94.6 0.58 1.3E-05 43.1 11.6 164 167-334 83-262 (297)
302 KOG2539 Mitochondrial/chloropl 94.5 0.075 1.6E-06 51.0 5.8 112 174-288 197-318 (491)
303 PRK09880 L-idonate 5-dehydroge 94.5 0.3 6.5E-06 45.9 10.0 99 175-286 167-267 (343)
304 COG3510 CmcI Cephalosporin hyd 94.4 0.24 5.2E-06 42.0 7.8 108 176-291 68-186 (237)
305 COG3129 Predicted SAM-dependen 94.2 0.19 4.1E-06 43.9 7.0 101 159-260 54-165 (292)
306 PF14803 Nudix_N_2: Nudix N-te 94.2 0.02 4.4E-07 34.2 0.8 31 73-108 2-32 (34)
307 COG4301 Uncharacterized conser 94.1 1.3 2.9E-05 39.2 12.1 106 177-285 78-193 (321)
308 COG1645 Uncharacterized Zn-fin 94.1 0.024 5.2E-07 44.8 1.3 25 72-107 29-53 (131)
309 KOG0024 Sorbitol dehydrogenase 94.1 0.46 1E-05 43.7 9.6 103 174-289 166-277 (354)
310 PF05430 Methyltransf_30: S-ad 94.1 0.084 1.8E-06 41.9 4.4 88 230-348 31-124 (124)
311 KOG2920 Predicted methyltransf 93.9 0.07 1.5E-06 48.1 3.9 107 177-284 116-233 (282)
312 PF08271 TF_Zn_Ribbon: TFIIB z 93.7 0.036 7.7E-07 35.2 1.3 29 72-108 1-29 (43)
313 KOG1501 Arginine N-methyltrans 93.7 0.16 3.5E-06 48.4 6.0 73 179-254 68-141 (636)
314 cd00315 Cyt_C5_DNA_methylase C 93.6 0.23 5E-06 45.3 7.0 68 180-257 2-71 (275)
315 TIGR02098 MJ0042_CXXC MJ0042 f 93.6 0.033 7.1E-07 34.2 1.0 35 71-109 2-36 (38)
316 TIGR00561 pntA NAD(P) transhyd 93.6 0.35 7.6E-06 47.8 8.6 98 176-284 162-283 (511)
317 KOG2671 Putative RNA methylase 93.4 0.12 2.7E-06 47.6 4.6 83 170-255 201-291 (421)
318 PRK09678 DNA-binding transcrip 93.1 0.072 1.6E-06 37.8 2.2 50 71-121 1-52 (72)
319 COG3809 Uncharacterized protei 92.9 0.048 1E-06 38.6 1.1 37 71-114 1-37 (88)
320 COG1198 PriA Primosomal protei 92.9 1.3 2.9E-05 45.7 11.8 110 179-291 484-606 (730)
321 PF11312 DUF3115: Protein of u 92.9 0.29 6.2E-06 44.9 6.3 110 179-288 88-245 (315)
322 cd08237 ribitol-5-phosphate_DH 92.8 0.92 2E-05 42.6 10.0 95 175-286 161-257 (341)
323 PHA00626 hypothetical protein 92.8 0.064 1.4E-06 35.4 1.4 34 72-110 1-35 (59)
324 PRK13699 putative methylase; P 92.8 0.23 5.1E-06 43.9 5.6 51 233-283 3-70 (227)
325 TIGR01206 lysW lysine biosynth 92.4 0.075 1.6E-06 35.4 1.4 33 71-110 2-34 (54)
326 PF10571 UPF0547: Uncharacteri 92.3 0.086 1.9E-06 29.4 1.4 24 73-109 2-25 (26)
327 PF00107 ADH_zinc_N: Zinc-bind 92.2 0.69 1.5E-05 36.5 7.2 86 187-288 1-92 (130)
328 COG1997 RPL43A Ribosomal prote 92.1 0.083 1.8E-06 38.4 1.5 32 70-110 34-65 (89)
329 cd08254 hydroxyacyl_CoA_DH 6-h 92.1 2.5 5.4E-05 39.1 12.0 96 174-286 162-264 (338)
330 cd05188 MDR Medium chain reduc 92.0 3.2 6.8E-05 36.8 12.2 96 176-287 133-234 (271)
331 PRK00398 rpoP DNA-directed RNA 91.9 0.12 2.7E-06 33.2 2.0 31 70-109 2-32 (46)
332 cd08230 glucose_DH Glucose deh 91.9 1.4 3E-05 41.5 10.1 97 175-286 170-270 (355)
333 COG1565 Uncharacterized conser 91.7 0.81 1.8E-05 42.8 7.8 48 177-224 77-132 (370)
334 PF14446 Prok-RING_1: Prokaryo 91.7 0.094 2E-06 34.7 1.3 27 72-109 6-32 (54)
335 KOG1088 Uncharacterized conser 91.6 0.078 1.7E-06 40.7 0.9 27 94-120 94-120 (124)
336 PF10354 DUF2431: Domain of un 91.5 3.2 7E-05 34.7 10.7 128 184-338 3-154 (166)
337 KOG2352 Predicted spermine/spe 91.5 0.26 5.6E-06 47.7 4.5 110 177-290 295-421 (482)
338 COG1568 Predicted methyltransf 91.2 1.7 3.6E-05 39.3 8.9 99 175-286 150-261 (354)
339 PF09297 zf-NADH-PPase: NADH p 91.2 0.11 2.3E-06 30.6 1.1 28 72-108 4-31 (32)
340 PF05711 TylF: Macrocin-O-meth 91.2 0.56 1.2E-05 42.0 6.0 116 169-287 66-214 (248)
341 PF08274 PhnA_Zn_Ribbon: PhnA 91.0 0.11 2.3E-06 30.1 0.8 26 73-108 4-29 (30)
342 TIGR00497 hsdM type I restrict 90.8 3.3 7.2E-05 41.2 11.8 129 158-287 196-357 (501)
343 PRK00464 nrdR transcriptional 90.8 0.13 2.9E-06 42.3 1.6 40 72-111 1-41 (154)
344 KOG2651 rRNA adenine N-6-methy 90.7 0.76 1.7E-05 43.2 6.6 43 176-219 152-194 (476)
345 PF07191 zinc-ribbons_6: zinc- 90.6 0.11 2.3E-06 36.4 0.8 28 72-110 2-29 (70)
346 PF09862 DUF2089: Protein of u 90.5 0.11 2.4E-06 40.2 0.8 23 74-109 1-23 (113)
347 TIGR01202 bchC 2-desacetyl-2-h 90.5 1.9 4E-05 39.9 9.2 88 177-286 144-232 (308)
348 COG0686 Ald Alanine dehydrogen 90.4 1.1 2.4E-05 41.2 7.1 101 177-285 167-268 (371)
349 PF14353 CpXC: CpXC protein 90.1 0.17 3.6E-06 40.5 1.6 40 72-111 2-51 (128)
350 PF03514 GRAS: GRAS domain fam 90.1 5.6 0.00012 38.0 12.2 121 167-288 100-246 (374)
351 COG1656 Uncharacterized conser 90.1 0.11 2.4E-06 42.8 0.5 39 70-108 96-140 (165)
352 PTZ00357 methyltransferase; Pr 90.0 1.9 4E-05 43.9 8.9 100 180-280 703-830 (1072)
353 PF13240 zinc_ribbon_2: zinc-r 90.0 0.17 3.7E-06 27.3 1.1 21 74-107 2-22 (23)
354 KOG1253 tRNA methyltransferase 90.0 0.35 7.6E-06 46.9 3.9 107 176-288 108-219 (525)
355 PF02150 RNA_POL_M_15KD: RNA p 89.9 0.16 3.5E-06 30.6 1.0 32 72-111 2-33 (35)
356 smart00659 RPOLCX RNA polymera 89.8 0.24 5.2E-06 31.5 1.8 29 71-109 2-30 (44)
357 TIGR03451 mycoS_dep_FDH mycoth 89.8 5.6 0.00012 37.4 12.0 98 174-286 173-277 (358)
358 TIGR00595 priA primosomal prot 89.7 9.6 0.00021 38.0 14.0 32 179-210 262-293 (505)
359 smart00661 RPOL9 RNA polymeras 89.7 0.3 6.4E-06 32.1 2.3 34 73-113 2-35 (52)
360 KOG3507 DNA-directed RNA polym 89.6 0.35 7.5E-06 32.3 2.5 34 66-109 15-48 (62)
361 KOG3924 Putative protein methy 89.6 1.1 2.4E-05 42.4 6.7 121 167-288 182-311 (419)
362 cd00401 AdoHcyase S-adenosyl-L 89.5 2.6 5.5E-05 40.8 9.4 100 166-286 189-290 (413)
363 KOG1227 Putative methyltransfe 89.4 0.32 7E-06 44.2 3.0 99 178-284 195-295 (351)
364 COG2933 Predicted SAM-dependen 89.4 1.7 3.7E-05 38.9 7.3 86 176-277 210-295 (358)
365 PRK00432 30S ribosomal protein 89.3 0.22 4.7E-06 32.7 1.4 27 72-108 21-47 (50)
366 PRK14873 primosome assembly pr 89.2 4.1 8.8E-05 42.0 11.1 96 178-285 430-536 (665)
367 PF01096 TFIIS_C: Transcriptio 89.2 0.11 2.5E-06 32.1 -0.0 36 73-108 2-38 (39)
368 TIGR02822 adh_fam_2 zinc-bindi 88.9 6.8 0.00015 36.5 11.8 94 173-286 161-255 (329)
369 PF09538 FYDLN_acid: Protein o 88.6 0.27 5.9E-06 37.9 1.7 31 71-111 9-39 (108)
370 PF03604 DNA_RNApol_7kD: DNA d 88.6 0.35 7.5E-06 28.5 1.7 28 72-109 1-28 (32)
371 cd08281 liver_ADH_like1 Zinc-d 88.0 6.4 0.00014 37.3 11.2 99 173-286 187-291 (371)
372 COG2888 Predicted Zn-ribbon RN 88.0 0.28 6E-06 33.0 1.2 38 65-106 21-58 (61)
373 TIGR03366 HpnZ_proposed putati 87.8 2.9 6.2E-05 37.9 8.3 96 175-286 118-219 (280)
374 PF11899 DUF3419: Protein of u 87.8 1.2 2.6E-05 42.5 5.9 55 168-224 26-80 (380)
375 PF11781 RRN7: RNA polymerase 87.8 0.25 5.5E-06 29.9 0.9 28 70-107 7-34 (36)
376 PRK06266 transcription initiat 87.8 0.24 5.3E-06 42.0 1.1 36 64-107 110-145 (178)
377 PF06677 Auto_anti-p27: Sjogre 87.6 0.34 7.4E-06 30.3 1.4 24 72-105 18-41 (41)
378 TIGR00373 conserved hypothetic 87.2 0.24 5.3E-06 41.1 0.8 35 65-107 103-137 (158)
379 PF13248 zf-ribbon_3: zinc-rib 86.9 0.36 7.9E-06 26.9 1.1 22 72-106 3-24 (26)
380 PRK05580 primosome assembly pr 86.9 14 0.0003 38.3 13.5 103 179-289 430-550 (679)
381 smart00440 ZnF_C2C2 C2C2 Zinc 86.8 0.3 6.4E-06 30.4 0.8 36 73-108 2-38 (40)
382 PF11253 DUF3052: Protein of u 86.6 8.6 0.00019 30.4 9.0 71 246-338 43-113 (127)
383 PF04606 Ogr_Delta: Ogr/Delta- 86.5 0.25 5.3E-06 32.0 0.3 41 73-114 1-43 (47)
384 COG1326 Uncharacterized archae 86.5 0.25 5.5E-06 41.6 0.5 38 70-111 5-43 (201)
385 PLN02740 Alcohol dehydrogenase 86.4 11 0.00023 36.0 11.7 99 173-286 194-301 (381)
386 PF13453 zf-TFIIB: Transcripti 86.3 0.13 2.9E-06 32.1 -1.0 32 73-111 1-32 (41)
387 cd08232 idonate-5-DH L-idonate 86.1 7.5 0.00016 36.0 10.3 94 177-285 165-262 (339)
388 PF03811 Zn_Tnp_IS1: InsA N-te 85.9 0.65 1.4E-05 28.1 1.9 31 72-105 6-36 (36)
389 KOG0821 Predicted ribosomal RN 85.5 8.9 0.00019 33.5 9.3 74 163-241 36-109 (326)
390 smart00531 TFIIE Transcription 85.4 0.35 7.7E-06 39.6 0.8 41 65-108 93-133 (147)
391 PF14205 Cys_rich_KTR: Cystein 85.3 0.64 1.4E-05 30.7 1.8 37 71-110 4-40 (55)
392 PF03119 DNA_ligase_ZBD: NAD-d 85.2 0.42 9E-06 27.2 0.8 22 73-103 1-22 (28)
393 PF11899 DUF3419: Protein of u 85.1 1.6 3.6E-05 41.6 5.3 61 229-289 274-338 (380)
394 TIGR02300 FYDLN_acid conserved 85.0 0.58 1.3E-05 36.8 1.8 31 71-111 9-39 (129)
395 PF05206 TRM13: Methyltransfer 84.8 4.3 9.3E-05 36.6 7.5 73 168-243 9-86 (259)
396 PRK11524 putative methyltransf 84.7 0.8 1.7E-05 41.9 2.9 55 230-284 7-79 (284)
397 COG4306 Uncharacterized protei 84.7 0.38 8.2E-06 37.4 0.6 44 69-112 37-82 (160)
398 smart00834 CxxC_CXXC_SSSS Puta 84.6 0.63 1.4E-05 28.8 1.6 30 71-106 5-34 (41)
399 COG1062 AdhC Zn-dependent alco 84.6 13 0.00028 34.8 10.6 104 168-286 176-286 (366)
400 PRK10220 hypothetical protein; 84.5 0.74 1.6E-05 35.1 2.1 31 71-111 3-33 (111)
401 KOG2906 RNA polymerase III sub 84.5 0.46 9.9E-06 35.3 1.0 37 71-114 1-37 (105)
402 KOG1269 SAM-dependent methyltr 84.4 5.8 0.00013 37.7 8.5 110 178-291 181-319 (364)
403 PF08792 A2L_zn_ribbon: A2L zi 84.4 0.76 1.6E-05 27.3 1.7 30 71-109 3-32 (33)
404 PRK10458 DNA cytosine methylas 84.3 37 0.00081 33.5 14.3 71 166-242 70-146 (467)
405 TIGR00686 phnA alkylphosphonat 84.1 0.64 1.4E-05 35.4 1.6 30 72-111 3-32 (109)
406 COG0270 Dcm Site-specific DNA 84.1 14 0.0003 34.6 11.0 122 179-330 4-141 (328)
407 PRK12495 hypothetical protein; 83.8 0.6 1.3E-05 40.3 1.5 32 68-110 39-70 (226)
408 KOG2782 Putative SAM dependent 83.8 0.58 1.2E-05 40.6 1.4 98 165-265 31-137 (303)
409 PRK14890 putative Zn-ribbon RN 83.8 0.56 1.2E-05 31.6 1.1 34 69-106 23-56 (59)
410 PF14740 DUF4471: Domain of un 83.5 2.5 5.4E-05 38.7 5.5 67 246-333 220-286 (289)
411 COG3677 Transposase and inacti 83.5 0.72 1.6E-05 36.9 1.8 42 70-115 29-70 (129)
412 PLN02586 probable cinnamyl alc 83.5 9.4 0.0002 36.1 9.8 95 176-286 182-279 (360)
413 cd08239 THR_DH_like L-threonin 83.0 18 0.00039 33.6 11.4 98 173-286 159-263 (339)
414 PF02737 3HCDH_N: 3-hydroxyacy 82.9 8.6 0.00019 32.5 8.3 100 180-287 1-116 (180)
415 COG1571 Predicted DNA-binding 82.8 0.72 1.6E-05 44.1 1.8 35 67-111 346-380 (421)
416 PF04072 LCM: Leucine carboxyl 82.8 3.3 7.1E-05 35.1 5.7 94 168-262 68-171 (183)
417 PF12760 Zn_Tnp_IS1595: Transp 82.4 0.83 1.8E-05 29.3 1.4 27 72-106 19-45 (46)
418 PF01927 Mut7-C: Mut7-C RNAse 81.9 0.72 1.6E-05 37.8 1.3 39 71-109 91-135 (147)
419 COG1096 Predicted RNA-binding 81.8 0.73 1.6E-05 38.8 1.3 29 70-109 148-176 (188)
420 PF02153 PDH: Prephenate dehyd 81.5 3.5 7.6E-05 37.1 5.7 78 191-284 1-78 (258)
421 KOG1098 Putative SAM-dependent 81.5 3.4 7.3E-05 41.4 5.8 101 175-289 42-162 (780)
422 TIGR02819 fdhA_non_GSH formald 81.5 18 0.00038 34.8 10.9 104 174-286 182-300 (393)
423 TIGR00244 transcriptional regu 81.3 0.89 1.9E-05 36.8 1.6 43 72-114 1-44 (147)
424 COG1327 Predicted transcriptio 81.2 0.87 1.9E-05 36.9 1.5 43 72-114 1-44 (156)
425 KOG2078 tRNA modification enzy 81.2 1.5 3.2E-05 41.9 3.2 70 166-240 240-309 (495)
426 COG0863 DNA modification methy 81.1 7.1 0.00015 35.6 7.8 60 162-224 208-267 (302)
427 cd08245 CAD Cinnamyl alcohol d 81.0 23 0.00049 32.6 11.2 98 173-286 158-257 (330)
428 TIGR02825 B4_12hDH leukotriene 81.0 30 0.00065 31.8 12.0 97 172-285 133-237 (325)
429 TIGR02818 adh_III_F_hyde S-(hy 80.7 24 0.00051 33.4 11.4 101 173-286 181-288 (368)
430 PRK14811 formamidopyrimidine-D 80.7 0.84 1.8E-05 41.5 1.4 31 73-110 237-267 (269)
431 PF05050 Methyltransf_21: Meth 80.5 3.9 8.5E-05 33.4 5.3 38 183-220 1-42 (167)
432 cd05213 NAD_bind_Glutamyl_tRNA 80.4 25 0.00054 32.6 11.1 132 168-326 168-302 (311)
433 PF07754 DUF1610: Domain of un 80.3 1.3 2.8E-05 24.1 1.5 9 97-105 15-23 (24)
434 PLN02827 Alcohol dehydrogenase 80.1 19 0.00042 34.2 10.6 97 174-285 190-295 (378)
435 TIGR00518 alaDH alanine dehydr 79.9 4.1 8.9E-05 38.8 5.9 102 177-286 166-268 (370)
436 PHA02998 RNA polymerase subuni 79.9 0.88 1.9E-05 37.8 1.1 41 71-111 143-184 (195)
437 PLN03154 putative allyl alcoho 79.7 29 0.00063 32.5 11.6 97 173-285 154-258 (348)
438 PRK07806 short chain dehydroge 79.6 33 0.00072 29.9 11.4 102 178-285 6-134 (248)
439 PRK10445 endonuclease VIII; Pr 79.3 0.89 1.9E-05 41.2 1.1 28 72-106 236-263 (263)
440 PRK07819 3-hydroxybutyryl-CoA 79.2 5.2 0.00011 36.7 6.1 100 179-286 6-122 (286)
441 cd08234 threonine_DH_like L-th 79.1 36 0.00079 31.2 12.0 98 173-286 155-258 (334)
442 PRK07109 short chain dehydroge 79.0 29 0.00063 32.4 11.3 76 177-258 7-95 (334)
443 PRK12380 hydrogenase nickel in 78.8 1.2 2.5E-05 34.8 1.5 34 64-108 63-96 (113)
444 PF00145 DNA_methylase: C-5 cy 78.8 3.3 7.2E-05 38.2 4.9 122 180-333 2-139 (335)
445 PRK10309 galactitol-1-phosphat 78.8 25 0.00054 32.8 10.8 98 174-286 157-261 (347)
446 TIGR01384 TFS_arch transcripti 78.7 1.2 2.6E-05 34.0 1.5 27 73-110 2-28 (104)
447 PRK06701 short chain dehydroge 78.6 22 0.00049 32.3 10.2 104 177-286 45-182 (290)
448 PRK12939 short chain dehydroge 78.4 17 0.00037 31.7 9.2 73 178-257 7-93 (250)
449 cd08294 leukotriene_B4_DH_like 78.4 33 0.00071 31.4 11.5 97 172-285 138-241 (329)
450 TIGR00675 dcm DNA-methyltransf 78.1 4.8 0.00011 37.4 5.6 66 181-256 1-67 (315)
451 PF02254 TrkA_N: TrkA-N domain 77.9 19 0.0004 27.5 8.2 86 186-286 4-97 (116)
452 COG1998 RPS31 Ribosomal protei 77.5 1.4 3.1E-05 28.4 1.3 28 72-108 20-47 (51)
453 cd08285 NADP_ADH NADP(H)-depen 77.4 36 0.00078 31.7 11.5 97 174-285 163-266 (351)
454 TIGR03831 YgiT_finger YgiT-typ 77.4 1.8 3.8E-05 27.4 1.8 14 97-110 31-44 (46)
455 PF07282 OrfB_Zn_ribbon: Putat 77.2 1.3 2.8E-05 31.0 1.2 29 71-108 28-56 (69)
456 COG5349 Uncharacterized protei 77.2 1.1 2.4E-05 34.8 0.9 37 65-109 15-51 (126)
457 TIGR00936 ahcY adenosylhomocys 76.4 31 0.00067 33.4 10.6 98 166-285 182-282 (406)
458 PRK14810 formamidopyrimidine-D 76.3 1.2 2.6E-05 40.5 1.1 27 72-105 245-271 (272)
459 cd05278 FDH_like Formaldehyde 76.1 29 0.00063 32.1 10.4 96 175-285 165-267 (347)
460 PRK14892 putative transcriptio 76.1 2.2 4.7E-05 32.4 2.2 36 69-110 19-54 (99)
461 PF01780 Ribosomal_L37ae: Ribo 76.0 1.2 2.6E-05 32.9 0.8 31 70-109 34-64 (90)
462 PRK08265 short chain dehydroge 76.0 29 0.00064 30.8 10.1 71 178-257 6-89 (261)
463 COG1086 Predicted nucleoside-d 76.0 24 0.00053 35.3 9.9 82 178-262 250-339 (588)
464 PRK07576 short chain dehydroge 76.0 30 0.00066 30.8 10.2 74 177-256 8-94 (264)
465 PHA02768 hypothetical protein; 75.9 0.97 2.1E-05 30.2 0.2 44 72-117 6-50 (55)
466 COG1779 C4-type Zn-finger prot 75.9 1.2 2.5E-05 38.0 0.8 45 65-109 8-54 (201)
467 PF09723 Zn-ribbon_8: Zinc rib 75.9 1.8 3.9E-05 27.2 1.4 30 71-106 5-34 (42)
468 PRK06035 3-hydroxyacyl-CoA deh 75.7 11 0.00024 34.5 7.3 41 179-221 4-46 (291)
469 COG0777 AccD Acetyl-CoA carbox 75.5 1.1 2.3E-05 40.2 0.5 33 70-110 27-59 (294)
470 KOG0022 Alcohol dehydrogenase, 75.4 71 0.0015 29.8 12.0 98 173-286 188-295 (375)
471 TIGR03201 dearomat_had 6-hydro 75.4 37 0.0008 31.7 11.0 100 173-286 162-273 (349)
472 cd00350 rubredoxin_like Rubred 75.4 2.2 4.7E-05 25.2 1.6 24 72-106 2-25 (33)
473 PLN02514 cinnamyl-alcohol dehy 75.3 31 0.00067 32.4 10.5 96 176-286 179-276 (357)
474 COG3877 Uncharacterized protei 75.1 1.3 2.9E-05 33.4 0.8 26 71-109 6-31 (122)
475 PRK09072 short chain dehydroge 75.1 40 0.00087 29.9 10.7 75 178-259 5-91 (263)
476 cd08300 alcohol_DH_class_III c 75.0 49 0.0011 31.2 11.8 99 173-286 182-289 (368)
477 PRK01103 formamidopyrimidine/5 74.9 1.4 3.1E-05 40.1 1.2 28 72-106 246-273 (274)
478 PLN02178 cinnamyl-alcohol dehy 74.9 15 0.00032 35.0 8.2 95 176-286 177-274 (375)
479 PRK13945 formamidopyrimidine-D 74.8 1.4 3.1E-05 40.2 1.2 27 72-105 255-281 (282)
480 PRK03824 hypA hydrogenase nick 74.5 1.8 3.9E-05 34.9 1.5 42 67-108 66-117 (135)
481 PRK08324 short chain dehydroge 74.4 33 0.00072 35.6 11.2 103 177-286 421-558 (681)
482 PRK09260 3-hydroxybutyryl-CoA 74.4 12 0.00027 34.1 7.2 95 180-285 3-117 (288)
483 cd08255 2-desacetyl-2-hydroxye 74.3 30 0.00066 30.8 9.8 96 173-285 93-190 (277)
484 PF10237 N6-adenineMlase: Prob 74.2 30 0.00066 28.8 8.8 94 177-287 25-125 (162)
485 COG1996 RPC10 DNA-directed RNA 74.1 1.8 3.9E-05 28.1 1.1 32 70-110 5-36 (49)
486 TIGR00100 hypA hydrogenase nic 74.0 1.9 4.2E-05 33.7 1.5 33 65-108 64-96 (115)
487 PRK00423 tfb transcription ini 74.0 1.9 4.1E-05 40.0 1.8 31 71-109 11-41 (310)
488 COG0287 TyrA Prephenate dehydr 74.0 14 0.00031 33.7 7.4 90 179-283 4-96 (279)
489 cd08277 liver_alcohol_DH_like 73.9 44 0.00096 31.4 11.2 101 173-286 180-287 (365)
490 cd08242 MDR_like Medium chain 73.9 50 0.0011 30.1 11.3 93 173-284 151-244 (319)
491 PRK05978 hypothetical protein; 73.8 2.4 5.3E-05 34.6 2.1 34 70-111 32-65 (148)
492 smart00778 Prim_Zn_Ribbon Zinc 73.4 3 6.4E-05 25.4 1.9 30 72-106 4-33 (37)
493 PLN02494 adenosylhomocysteinas 73.2 21 0.00045 35.2 8.6 100 165-285 240-341 (477)
494 PRK00415 rps27e 30S ribosomal 73.2 2.5 5.4E-05 28.6 1.7 41 65-113 5-45 (59)
495 COG1675 TFA1 Transcription ini 73.1 1.4 3E-05 37.1 0.5 36 64-107 106-141 (176)
496 PRK00564 hypA hydrogenase nick 73.0 2.1 4.6E-05 33.5 1.6 35 64-108 64-98 (117)
497 PF12773 DZR: Double zinc ribb 72.9 2.7 5.9E-05 27.2 1.8 30 70-109 11-40 (50)
498 COG1594 RPB9 DNA-directed RNA 72.9 1.5 3.3E-05 34.1 0.7 39 71-109 72-111 (113)
499 cd08231 MDR_TM0436_like Hypoth 72.9 73 0.0016 29.8 12.3 93 177-286 177-281 (361)
500 COG1592 Rubrerythrin [Energy p 72.8 2.4 5.2E-05 35.3 1.9 25 71-107 134-158 (166)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.96 E-value=4.7e-28 Score=212.12 Aligned_cols=208 Identities=24% Similarity=0.336 Sum_probs=163.9
Q ss_pred eeeecccCCCCCccccCccchhhhcCChhhhhhhhhhhhhhhcCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHH
Q 018740 114 HFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSR 193 (351)
Q Consensus 114 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~ 193 (351)
.+...++..+..||.. |++.|+..++.||+.. ...+...+|.+|||||||||.++.
T Consensus 12 ~v~~vF~~ia~~YD~~---------n~~~S~g~~~~Wr~~~---------------i~~~~~~~g~~vLDva~GTGd~a~ 67 (238)
T COG2226 12 KVQKVFDKVAKKYDLM---------NDLMSFGLHRLWRRAL---------------ISLLGIKPGDKVLDVACGTGDMAL 67 (238)
T ss_pred HHHHHHHhhHHHHHhh---------cccccCcchHHHHHHH---------------HHhhCCCCCCEEEEecCCccHHHH
Confidence 3344555666777776 8899999999999865 333333478999999999999999
Q ss_pred HHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHh
Q 018740 194 IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISR 273 (351)
Q Consensus 194 ~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~ 273 (351)
.+++....++|+|+|+|+.|++.|+++.... | ..+++|+.+|++++||++++||+|++.+.|++++|++++|+|++|
T Consensus 68 ~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~-~--~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~R 144 (238)
T COG2226 68 LLAKSVGTGEVVGLDISESMLEVAREKLKKK-G--VQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYR 144 (238)
T ss_pred HHHHhcCCceEEEEECCHHHHHHHHHHhhcc-C--ccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHH
Confidence 9999976789999999999999999998875 2 344999999999999999999999999999999999999999999
Q ss_pred cccCCcEEEEEeeccCCCCCcchHHHHHHHH-Hhh----------------ccCCccCCCHHHHHHHHHHCCCeEEE--E
Q 018740 274 VLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN-MMQ----------------ISGSYTFLSEREIEDLCRACGLVDFK--C 334 (351)
Q Consensus 274 ~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~-~~~----------------~~~~~~~~s~~~l~~ll~~aGf~~v~--~ 334 (351)
+|||||++++.+............+..+-.. ... ......+.+.+++.++++++||..+. .
T Consensus 145 VlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~ 224 (238)
T COG2226 145 VLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYEN 224 (238)
T ss_pred hhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEe
Confidence 9999999999887764322222222211111 000 11233477899999999999998776 5
Q ss_pred EecCeEEEEEEecC
Q 018740 335 TRNRGFVMFTATKP 348 (351)
Q Consensus 335 ~~~g~~~~~~a~kp 348 (351)
...|...++.+.|+
T Consensus 225 ~~~G~~~l~~g~K~ 238 (238)
T COG2226 225 LTFGIVALHRGYKP 238 (238)
T ss_pred eeeeeEEEEEEecC
Confidence 67888899988885
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.96 E-value=1.1e-28 Score=218.29 Aligned_cols=204 Identities=25% Similarity=0.366 Sum_probs=93.7
Q ss_pred ceeeecccCCCCCccccCccchhhhcCChhhhhhhhhhhhhhhcCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHH
Q 018740 113 THFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFS 192 (351)
Q Consensus 113 g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~ 192 (351)
.++.-+++..+..||.. |.+.+++.++.||+.. .+.+...++.+|||+|||||.++
T Consensus 7 ~~v~~~Fd~ia~~YD~~---------n~~ls~g~~~~wr~~~---------------~~~~~~~~g~~vLDv~~GtG~~~ 62 (233)
T PF01209_consen 7 QYVRKMFDRIAPRYDRM---------NDLLSFGQDRRWRRKL---------------IKLLGLRPGDRVLDVACGTGDVT 62 (233)
T ss_dssp ---------------------------------------SHH---------------HHHHT--S--EEEEET-TTSHHH
T ss_pred HHHHHHHHHHHHHhCCC---------ccccCCcHHHHHHHHH---------------HhccCCCCCCEEEEeCCChHHHH
Confidence 34555666777888876 7888999999999854 33345566889999999999999
Q ss_pred HHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHH
Q 018740 193 RIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEI 271 (351)
Q Consensus 193 ~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i 271 (351)
..+++. ++..+|+|+|+|++|++.|++++... ...+++++++|++++|+++++||+|++.+.+++++|+.++|+|+
T Consensus 63 ~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~---~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~ 139 (233)
T PF01209_consen 63 RELARRVGPNGKVVGVDISPGMLEVARKKLKRE---GLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREM 139 (233)
T ss_dssp HHHGGGSS---EEEEEES-HHHHHHHHHHHHHT---T--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHH
T ss_pred HHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh---CCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHH
Confidence 999886 55679999999999999999998875 24599999999999999999999999999999999999999999
Q ss_pred HhcccCCcEEEEEeeccCCCCCcchHHHHHHHHH------------hh--------ccCCccCCCHHHHHHHHHHCCCeE
Q 018740 272 SRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM------------MQ--------ISGSYTFLSEREIEDLCRACGLVD 331 (351)
Q Consensus 272 ~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~------------~~--------~~~~~~~~s~~~l~~ll~~aGf~~ 331 (351)
+|+|||||.+++.+...... +++..+...+ .. ......+.+.+++.++++++||+.
T Consensus 140 ~RVLkPGG~l~ile~~~p~~----~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~ 215 (233)
T PF01209_consen 140 YRVLKPGGRLVILEFSKPRN----PLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKN 215 (233)
T ss_dssp HHHEEEEEEEEEEEEEB-SS----HHHHHHHHH-----------------------------------------------
T ss_pred HHHcCCCeEEEEeeccCCCC----chhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999988876432 2222111111 00 112334678899999999999997
Q ss_pred EE--EEecCeEEEEEEec
Q 018740 332 FK--CTRNRGFVMFTATK 347 (351)
Q Consensus 332 v~--~~~~g~~~~~~a~k 347 (351)
++ ...+|...+++|+|
T Consensus 216 v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 216 VEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ------------------
T ss_pred ccccccccccccccccCC
Confidence 77 56788888888876
No 3
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.93 E-value=5.2e-25 Score=199.06 Aligned_cols=177 Identities=20% Similarity=0.286 Sum_probs=132.5
Q ss_pred hccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCce
Q 018740 171 GYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~f 249 (351)
+.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|++|++.|+++..........++.++++|++++|+++++|
T Consensus 67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 146 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYF 146 (261)
T ss_pred HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCE
Confidence 3445556789999999999999988876 455699999999999999988754210111468999999999999999999
Q ss_pred eeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHH----Hh---h--------ccCCccC
Q 018740 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN----MM---Q--------ISGSYTF 314 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~----~~---~--------~~~~~~~ 314 (351)
|+|++..++||++|+..+++++.|+|||||.+++.++..+......+........ .. . ......+
T Consensus 147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988754321111111100000 00 0 0112357
Q ss_pred CCHHHHHHHHHHCCCeEEEEE--ecCeEEEEEEec
Q 018740 315 LSEREIEDLCRACGLVDFKCT--RNRGFVMFTATK 347 (351)
Q Consensus 315 ~s~~~l~~ll~~aGf~~v~~~--~~g~~~~~~a~k 347 (351)
++.+++.++++++||++++.. .+|...++.+++
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~ 261 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEISGGLMGNLVATR 261 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEeC
Confidence 899999999999999988743 456667777654
No 4
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.92 E-value=2.7e-24 Score=195.98 Aligned_cols=179 Identities=23% Similarity=0.338 Sum_probs=130.6
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccCCCCCccccCccchhhhcCChhhhhhhhhh
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 150 (351)
.++||+|+++|.... +.++|+++|+++..++||++++........... ...+.+..
T Consensus 2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~--d~~~~~~a----------- 57 (272)
T PRK11088 2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPG--DNKEMMQA----------- 57 (272)
T ss_pred cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCC--cCHHHHHH-----------
Confidence 489999999986543 679999999999999999999874332221110 00111111
Q ss_pred hhhhhcCCCCCcHH--HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHhhhC
Q 018740 151 RQNFVWGGFPGPEK--EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQES 225 (351)
Q Consensus 151 r~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~ 225 (351)
|+.|.+.+++.+.. ..+.+.+.+. .+..+|||+|||+|.++..+++..+. ..++|+|+|+.|++.|+++
T Consensus 58 r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~----- 131 (272)
T PRK11088 58 RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR----- 131 (272)
T ss_pred HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----
Confidence 44555555543321 2233444433 34568999999999999999877542 3789999999999999875
Q ss_pred CCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 226 NFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 226 g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.+++.+.++|+.++|+++++||+|++.... ..++++.|+|||||.+++.++..+
T Consensus 132 ---~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 132 ---YPQVTFCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred ---CCCCeEEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCCCEEEEEeCCCc
Confidence 467889999999999999999999986541 236899999999999999887653
No 5
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.90 E-value=5.3e-23 Score=176.87 Aligned_cols=210 Identities=21% Similarity=0.234 Sum_probs=159.1
Q ss_pred ceeeecccCCCCCccccCccchhhhcCChhhhhhhhhhhhhhhcCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHH
Q 018740 113 THFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFS 192 (351)
Q Consensus 113 g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~ 192 (351)
..+..+++..+..||.+ |+..+.+..+.|+..+ ...+.+..+.++||++||||..+
T Consensus 60 ~~V~~vF~~vA~~YD~m---------ND~mSlGiHRlWKd~~---------------v~~L~p~~~m~~lDvaGGTGDia 115 (296)
T KOG1540|consen 60 RLVHHVFESVAKKYDIM---------NDAMSLGIHRLWKDMF---------------VSKLGPGKGMKVLDVAGGTGDIA 115 (296)
T ss_pred hHHHHHHHHHHHHHHHH---------HHHhhcchhHHHHHHh---------------hhccCCCCCCeEEEecCCcchhH
Confidence 33444566666677776 7888888888897544 55677777899999999999999
Q ss_pred HHHHHhCCC------CeEEEEeCCHHHHHHHHHHHhhhCCCCC-CCeEEEEecCCCCCCCCCceeeEEeccccccCCChH
Q 018740 193 RIFAKSGLF------SLVVALDYSENMLKQCYEFVQQESNFPK-ENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS 265 (351)
Q Consensus 193 ~~l~~~~~~------~~v~gvD~s~~~~~~a~~~~~~~~g~~~-~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~ 265 (351)
..+.+.-.. .+|+++|+|+.|+..++++..+. +... ..+.++.+|++++||++.+||..++.+.|..+++++
T Consensus 116 Fril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~ 194 (296)
T KOG1540|consen 116 FRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ 194 (296)
T ss_pred HHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHH
Confidence 988887443 79999999999999999998664 3322 349999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH--------HHHHHhh--------ccCCccCCCHHHHHHHHHHCCC
Q 018740 266 TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL--------LRQNMMQ--------ISGSYTFLSEREIEDLCRACGL 329 (351)
Q Consensus 266 ~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~--------~~~~~~~--------~~~~~~~~s~~~l~~ll~~aGf 329 (351)
+.|+|++|+|||||++.+.++..........+... +...+.. ......+.+.+++..+.+++||
T Consensus 195 k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF 274 (296)
T KOG1540|consen 195 KALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGF 274 (296)
T ss_pred HHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCC
Confidence 99999999999999999988765332111111111 1111111 1224457899999999999999
Q ss_pred eEEE---EEecCeEEEEEEec
Q 018740 330 VDFK---CTRNRGFVMFTATK 347 (351)
Q Consensus 330 ~~v~---~~~~g~~~~~~a~k 347 (351)
..+. ...+|...++.+-|
T Consensus 275 ~~~~~ye~lt~Gv~aIH~giK 295 (296)
T KOG1540|consen 275 SSVNGYENLTFGVVAIHSGIK 295 (296)
T ss_pred ccccccccceeeeeeeehhcc
Confidence 8875 44556666655544
No 6
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.90 E-value=1.4e-22 Score=180.48 Aligned_cols=177 Identities=23% Similarity=0.276 Sum_probs=135.9
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
.+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.++++++.. ..++++++.+|+..+++++
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA---GLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc---CCCceEEEEechhcCCCCC
Confidence 4555666667889999999999999999887 45569999999999999999987654 2468999999999988888
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcc-----------hHHHHHH-----HHHhhccC
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI-----------PFSRLLR-----QNMMQISG 310 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~-----------~~~~~~~-----~~~~~~~~ 310 (351)
++||+|++..+++|++++..+++++.++|+|||.+++.+.......... +...... ........
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 192 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQES 192 (231)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999998776543211100 1100000 00000112
Q ss_pred CccCCCHHHHHHHHHHCCCeEEE--EEecCeEEEEEEec
Q 018740 311 SYTFLSEREIEDLCRACGLVDFK--CTRNRGFVMFTATK 347 (351)
Q Consensus 311 ~~~~~s~~~l~~ll~~aGf~~v~--~~~~g~~~~~~a~k 347 (351)
...+++.+++.++|+++||++++ ....|....+++.|
T Consensus 193 ~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 193 TRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 34578999999999999999876 44567888888876
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.89 E-value=1.5e-21 Score=183.09 Aligned_cols=168 Identities=20% Similarity=0.201 Sum_probs=128.4
Q ss_pred HHHHHhccCC-----CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 166 FELMKGYLKP-----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 166 ~~~l~~~l~~-----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
.+.+...+.. .++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.++++.... +. ..++.++++|+.
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~-g~-~~~v~~~~~D~~ 178 (340)
T PLN02244 102 IEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQ-GL-SDKVSFQVADAL 178 (340)
T ss_pred HHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc-CC-CCceEEEEcCcc
Confidence 3445555544 567899999999999999999875 459999999999999999887665 22 357999999999
Q ss_pred CCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCC----cchHHHHHHHHHhhccCCccCCC
Q 018740 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN----LIPFSRLLRQNMMQISGSYTFLS 316 (351)
Q Consensus 241 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s 316 (351)
++|+++++||+|++..+++|++|+..+++++.++|||||.+++.++....... ..+........+........+.+
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s 258 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCS 258 (340)
T ss_pred cCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCC
Confidence 99999999999999999999999999999999999999999998876432211 11111111111111111223568
Q ss_pred HHHHHHHHHHCCCeEEEEEe
Q 018740 317 EREIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 317 ~~~l~~ll~~aGf~~v~~~~ 336 (351)
.+++.++++++||.+++...
T Consensus 259 ~~~~~~~l~~aGf~~v~~~d 278 (340)
T PLN02244 259 TSDYVKLAESLGLQDIKTED 278 (340)
T ss_pred HHHHHHHHHHCCCCeeEeee
Confidence 99999999999999988543
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.87 E-value=2e-20 Score=169.30 Aligned_cols=162 Identities=17% Similarity=0.233 Sum_probs=129.2
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
+..+.+...+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.|++.|+++... ..++.+..+|+...|
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~ 112 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKD 112 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCC
Confidence 345667777777888999999999999998887754 45999999999999999987543 357999999999989
Q ss_pred CCCCceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 244 FASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
+++++||+|++..+++|++ ++..++++++++|||||.+++.++....... +.......... ....+.+.+++.
T Consensus 113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~ 187 (263)
T PTZ00098 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN---WDEEFKAYIKK--RKYTLIPIQEYG 187 (263)
T ss_pred CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC---cHHHHHHHHHh--cCCCCCCHHHHH
Confidence 8899999999999999986 7889999999999999999999886543211 11112222111 134567999999
Q ss_pred HHHHHCCCeEEEEEe
Q 018740 322 DLCRACGLVDFKCTR 336 (351)
Q Consensus 322 ~ll~~aGf~~v~~~~ 336 (351)
++|+++||+++....
T Consensus 188 ~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 188 DLIKSCNFQNVVAKD 202 (263)
T ss_pred HHHHHCCCCeeeEEe
Confidence 999999999988554
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.87 E-value=2.6e-21 Score=178.56 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=120.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||||||+|.++..+++.+. +|+|+|+++.+++.|+++.... + ...++.++++|++++++.+++||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~-~-~~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMD-P-VTSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc-C-cccceeEEecCHHHhhhccCCCCEEEEh
Confidence 3567999999999999999988765 9999999999999999876543 1 1357999999999998888899999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHH------HHHHhhcc-CCccCCCHHHHHHHHHHCC
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL------RQNMMQIS-GSYTFLSEREIEDLCRACG 328 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~s~~~l~~ll~~aG 328 (351)
.+|||+.|+..+++++.++|||||.+++.+++.... .+...+ ........ ....+++++++.++++++|
T Consensus 206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~----~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aG 281 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMR----AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRAS 281 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHH----HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcC
Confidence 999999999999999999999999999999875311 111111 11111111 1224789999999999999
Q ss_pred CeEEEE
Q 018740 329 LVDFKC 334 (351)
Q Consensus 329 f~~v~~ 334 (351)
|++++.
T Consensus 282 f~i~~~ 287 (322)
T PLN02396 282 VDVKEM 287 (322)
T ss_pred CeEEEE
Confidence 998873
No 10
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.86 E-value=2.7e-20 Score=171.14 Aligned_cols=161 Identities=20% Similarity=0.276 Sum_probs=122.4
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...+...++++|||||||+|.++..++..++ ..|+|+|+|+.|+.+++...... ....++.+...+++++|..
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~--~~~~~v~~~~~~ie~lp~~- 186 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLL--DNDKRAILEPLGIEQLHEL- 186 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHh--ccCCCeEEEECCHHHCCCC-
Confidence 4566666667788999999999999999888875 37999999999987654321111 0135788888999888754
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCc--chHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL--IPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
.+||+|+++++++|+++|..+|++++++|+|||.+++.+...++.... .+. . .+......+..++..++..+|
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-~----ry~k~~nv~flpS~~~L~~~L 261 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-D----RYAKMKNVYFIPSVSALKNWL 261 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch-H----HHHhccccccCCCHHHHHHHH
Confidence 589999999999999999999999999999999999998765543211 111 0 111122244567999999999
Q ss_pred HHCCCeEEEEEe
Q 018740 325 RACGLVDFKCTR 336 (351)
Q Consensus 325 ~~aGf~~v~~~~ 336 (351)
+++||+.+++..
T Consensus 262 ~~aGF~~V~i~~ 273 (314)
T TIGR00452 262 EKVGFENFRILD 273 (314)
T ss_pred HHCCCeEEEEEe
Confidence 999999998654
No 11
>PRK05785 hypothetical protein; Provisional
Probab=99.86 E-value=1.3e-20 Score=166.67 Aligned_cols=183 Identities=21% Similarity=0.170 Sum_probs=127.2
Q ss_pred CChhhhhhhhhhhhhhhcCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 018740 139 MPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY 218 (351)
Q Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~ 218 (351)
|.+.++..+..|++... +.+...... +.+|||+|||+|.++..+++.+ ..+|+|+|+|++|++.|+
T Consensus 26 n~~~s~g~~~~wr~~~~-----------~~l~~~~~~--~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~ 91 (226)
T PRK05785 26 NRFISFNQDVRWRAELV-----------KTILKYCGR--PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNL 91 (226)
T ss_pred hhhccCCCcHHHHHHHH-----------HHHHHhcCC--CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHH
Confidence 33444555556665442 233333332 6799999999999999999885 349999999999999998
Q ss_pred HHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHH
Q 018740 219 EFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS 298 (351)
Q Consensus 219 ~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~ 298 (351)
++ ..++++|++++|+++++||+|++..+++|++|+..++++++|+|||.+ .++.....+.. ....+.
T Consensus 92 ~~-----------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~-~ile~~~p~~~-~~~~~~ 158 (226)
T PRK05785 92 VA-----------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV-GFIAMGKPDNV-IKRKYL 158 (226)
T ss_pred hc-----------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce-EEEEeCCCCcH-HHHHHH
Confidence 63 135789999999999999999999999999999999999999999942 23322222211 001111
Q ss_pred HHHH--------HHHhh--------ccCCccCCCHHHHHHHHHHC-CCeEEEEEecCeEEEEEEecC
Q 018740 299 RLLR--------QNMMQ--------ISGSYTFLSEREIEDLCRAC-GLVDFKCTRNRGFVMFTATKP 348 (351)
Q Consensus 299 ~~~~--------~~~~~--------~~~~~~~~s~~~l~~ll~~a-Gf~~v~~~~~g~~~~~~a~kp 348 (351)
..+. ..+.. ......+.+.+++.++++++ ++...+...+|...+++++|.
T Consensus 159 ~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~k~ 225 (226)
T PRK05785 159 SFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYADIKVYEERGLGLVYFVVGSSR 225 (226)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHhCceEEEEccccEEEEEEEeeC
Confidence 1100 00000 11233477899999999995 444455778899999999885
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.85 E-value=1.4e-20 Score=169.92 Aligned_cols=163 Identities=17% Similarity=0.226 Sum_probs=122.8
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FAS 246 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~ 246 (351)
.+...+. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++.... |. ..++.++++|+.+++ +.+
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~-g~-~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAK-GV-SDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc-CC-ccceEEEEcCHHHHhhhcC
Confidence 3444444 3467999999999999999999876 9999999999999999988765 21 357899999998764 567
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHH----HHHHHHHhh----ccCCccCCCHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS----RLLRQNMMQ----ISGSYTFLSER 318 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~s~~ 318 (351)
++||+|++..+++|+.+|..+++++.++|||||++++..++.+... ....+ ......... .......++++
T Consensus 111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 189 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLL-MHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPE 189 (255)
T ss_pred CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHH-HHHHHccChHHHHhcCccccccCCCCCCCCCHH
Confidence 8999999999999999999999999999999999999877754210 00000 000000000 00112457899
Q ss_pred HHHHHHHHCCCeEEEEEe
Q 018740 319 EIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 319 ~l~~ll~~aGf~~v~~~~ 336 (351)
++.++++++||+++...-
T Consensus 190 ~l~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 190 QVYQWLEEAGWQIMGKTG 207 (255)
T ss_pred HHHHHHHHCCCeEeeeee
Confidence 999999999999887543
No 13
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.85 E-value=8.9e-21 Score=158.80 Aligned_cols=139 Identities=27% Similarity=0.452 Sum_probs=110.4
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
..++.+|||||||+|.++..+++.+. +++|+|+++.+++. . ++.....+....+.++++||+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~fD~i~~ 84 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFPDGSFDLIIC 84 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCHSSSEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhccccchhhHhh
Confidence 45578999999999999999988877 99999999999887 1 223444444455556889999999
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh--ccCCccCCCHHHHHHHHHHCCCeEE
Q 018740 255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLSEREIEDLCRACGLVDF 332 (351)
Q Consensus 255 ~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~l~~ll~~aGf~~v 332 (351)
+.+|+|++|+..+|+++.++|||||++++.++.... .....+...... ...|..+++.+++.++++++||+++
T Consensus 85 ~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 85 NDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD-----PSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp ESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS-----HHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred HHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc-----hhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 999999999999999999999999999999998642 111112111111 2257789999999999999999988
Q ss_pred E
Q 018740 333 K 333 (351)
Q Consensus 333 ~ 333 (351)
+
T Consensus 160 ~ 160 (161)
T PF13489_consen 160 E 160 (161)
T ss_dssp E
T ss_pred E
Confidence 6
No 14
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.85 E-value=2.9e-20 Score=172.60 Aligned_cols=164 Identities=22% Similarity=0.323 Sum_probs=124.6
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...+.+..+.+|||||||+|.++..+++.++ ..|+|+|+|+.++..++...... + ...++.++.+|++++|+ +
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~-~-~~~~i~~~~~d~e~lp~-~ 187 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLL-G-NDQRAHLLPLGIEQLPA-L 187 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhc-C-CCCCeEEEeCCHHHCCC-c
Confidence 4556667666788999999999999999999875 36999999999987654432211 0 13579999999999988 7
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 326 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~ 326 (351)
++||+|+|..+++|+.|+..+|++++++|+|||.+++.+...++......+. ...+......+...+..++..+|++
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p---~~~y~~~~~~~~lps~~~l~~~L~~ 264 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP---GDRYAKMRNVYFIPSVPALKNWLER 264 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc---hhHHhcCccceeCCCHHHHHHHHHH
Confidence 8899999999999999999999999999999999999887654332211100 0111222223445699999999999
Q ss_pred CCCeEEEEEec
Q 018740 327 CGLVDFKCTRN 337 (351)
Q Consensus 327 aGf~~v~~~~~ 337 (351)
+||++++....
T Consensus 265 aGF~~i~~~~~ 275 (322)
T PRK15068 265 AGFKDVRIVDV 275 (322)
T ss_pred cCCceEEEEeC
Confidence 99999886543
No 15
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.85 E-value=1.8e-21 Score=167.67 Aligned_cols=148 Identities=18% Similarity=0.265 Sum_probs=122.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||||||-|.++..+++.|. +|+|+|+++.+++.|+.++.+. ...+++.+.+++++....++||+|+|.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~----gv~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALES----GVNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhc----cccccchhhhHHHHHhcCCCccEEEEh
Confidence 4688999999999999999999996 9999999999999999998877 566889999998887666899999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH------HHHHHhh-ccCCccCCCHHHHHHHHHHCC
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL------LRQNMMQ-ISGSYTFLSEREIEDLCRACG 328 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~s~~~l~~ll~~aG 328 (351)
.||||++||..+++.+.+++||||.+++++++.. ...++.. +...... -+....++.++++..++...|
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt----~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRT----LKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC----HHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence 9999999999999999999999999999999864 2222211 1111111 111235888999999999999
Q ss_pred CeEEE
Q 018740 329 LVDFK 333 (351)
Q Consensus 329 f~~v~ 333 (351)
+.+..
T Consensus 208 ~~~~~ 212 (243)
T COG2227 208 LKIID 212 (243)
T ss_pred ceEEe
Confidence 98776
No 16
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.85 E-value=4.6e-20 Score=166.66 Aligned_cols=155 Identities=15% Similarity=0.096 Sum_probs=118.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+...+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++ .+++++++|+.+++ ++
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----------~~~~~~~~d~~~~~-~~ 87 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----------RGVDARTGDVRDWK-PK 87 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----------cCCcEEEcChhhCC-CC
Confidence 34566666667889999999999999999998766799999999999999975 35789999998875 56
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH------HHHHHhhc--cCCccCCCHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL------LRQNMMQI--SGSYTFLSER 318 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~s~~ 318 (351)
++||+|+++.++||++|+..++++++++|||||.+++..+.... ......... +....... .....+.+.+
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 166 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFD-APSHAAVRALARREPWAKLLRDIPFRVGAVVQTPA 166 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcC-ChhHHHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence 79999999999999999999999999999999999997654211 011111111 11111111 1123456899
Q ss_pred HHHHHHHHCCCeEEE
Q 018740 319 EIEDLCRACGLVDFK 333 (351)
Q Consensus 319 ~l~~ll~~aGf~~v~ 333 (351)
++.++|+++||++..
T Consensus 167 ~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 167 GYAELLTDAGCKVDA 181 (255)
T ss_pred HHHHHHHhCCCeEEE
Confidence 999999999997544
No 17
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.83 E-value=5.4e-20 Score=164.08 Aligned_cols=161 Identities=19% Similarity=0.321 Sum_probs=124.5
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH--HHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE--FVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~--~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
+++...+..-.+++|||||||+|+++..++.+|+ ..|+|+|+++....+.+- ++... ...+......++++|.
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~----~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQ----DPPVFELPLGVEDLPN 179 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCC----CccEEEcCcchhhccc
Confidence 5677778777899999999999999999999986 579999999876555332 22111 2334444456788886
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
.+.||+|+|.+||+|..+|...|++++..|+|||.+++.+...++.....-.- ...+......+...|...+..+|
T Consensus 180 -~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P---~~rYa~m~nv~FiPs~~~L~~wl 255 (315)
T PF08003_consen 180 -LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVP---EDRYAKMRNVWFIPSVAALKNWL 255 (315)
T ss_pred -cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEcc---CCcccCCCceEEeCCHHHHHHHH
Confidence 78999999999999999999999999999999999999999877654322110 11233445566777999999999
Q ss_pred HHCCCeEEEEEe
Q 018740 325 RACGLVDFKCTR 336 (351)
Q Consensus 325 ~~aGf~~v~~~~ 336 (351)
+++||+.++++.
T Consensus 256 ~r~gF~~v~~v~ 267 (315)
T PF08003_consen 256 ERAGFKDVRCVD 267 (315)
T ss_pred HHcCCceEEEec
Confidence 999999998653
No 18
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.83 E-value=4.9e-19 Score=164.00 Aligned_cols=145 Identities=21% Similarity=0.257 Sum_probs=116.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||||||+|.++..+++..+..+++++|+|+.|++.|+++.. ..+++++.+|++++++++++||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------~~~i~~i~gD~e~lp~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIIEGDAEDLPFPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------ccCCeEEeccHHhCCCCCCceeEEEEc
Confidence 34679999999999999988887555699999999999999998743 246889999999999988999999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
.+++|++++..+++++.++|+|||.+++..+.... .+.... ... ....+.+.+++.++++++||+.++..
T Consensus 186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~-----~~~~r~---~~~--~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT-----FWLSRF---FAD--VWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred ChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc-----hhHHHH---hhh--hhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 99999999999999999999999999887654321 111111 111 01234689999999999999988854
Q ss_pred e
Q 018740 336 R 336 (351)
Q Consensus 336 ~ 336 (351)
.
T Consensus 256 ~ 256 (340)
T PLN02490 256 R 256 (340)
T ss_pred E
Confidence 4
No 19
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.83 E-value=3.9e-19 Score=174.59 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=128.2
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
..+.+.+.+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++.... ..++.+..+|+...++
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTY 328 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCC
Confidence 34556666666677899999999999999888764 459999999999999999876543 4679999999999888
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
++++||+|++..+++|++|+..++++++++|+|||.+++.++..........+ ...... .....++.+++.+++
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~----~~~~~~--~g~~~~~~~~~~~~l 402 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEF----AEYIKQ--RGYDLHDVQAYGQML 402 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHH----HHHHHh--cCCCCCCHHHHHHHH
Confidence 88899999999999999999999999999999999999998876432221111 111111 124567899999999
Q ss_pred HHCCCeEEEEE
Q 018740 325 RACGLVDFKCT 335 (351)
Q Consensus 325 ~~aGf~~v~~~ 335 (351)
+++||.++...
T Consensus 403 ~~aGF~~i~~~ 413 (475)
T PLN02336 403 KDAGFDDVIAE 413 (475)
T ss_pred HHCCCeeeeee
Confidence 99999988644
No 20
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.83 E-value=3.2e-19 Score=160.83 Aligned_cols=152 Identities=28% Similarity=0.349 Sum_probs=121.8
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.+...++.+|||+|||+|.++..+++.+. +++|+|+|+.|++.++++. ....++++|++.+|++
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPLA 100 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcCC
Confidence 45566666655678999999999999999988765 9999999999999998862 3356889999999998
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+++||+|+++.+++|..|+..++.++.++|+|||.++++++..+.. +.+...+...........+++.+++.++++
T Consensus 101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~----~el~~~~~~~~~~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL----PELHQAWQAVDERPHANRFLPPDAIEQALN 176 (251)
T ss_pred CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch----HHHHHHHHHhccCCccccCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999998875431 222222222222223456889999999999
Q ss_pred HCCCeE
Q 018740 326 ACGLVD 331 (351)
Q Consensus 326 ~aGf~~ 331 (351)
+.|+..
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 998864
No 21
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.83 E-value=9.7e-19 Score=156.16 Aligned_cols=179 Identities=23% Similarity=0.301 Sum_probs=135.0
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
.+...+...++.+|||+|||+|.++..+++.++ ..+++|+|+++.+++.+++++... +. ..++.++.+|+.+.++..
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~-~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-GL-SGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-cc-ccCeEEEecccccCCCCC
Confidence 344444555678999999999999999998875 579999999999999999987653 11 357899999999888777
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHH--------HHhh--------ccC
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ--------NMMQ--------ISG 310 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~--------~~~~--------~~~ 310 (351)
+.||+|++..+++|+.++..+++++.++|+|||.+++.+...............+.. .... ...
T Consensus 120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAES 199 (239)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHH
Confidence 899999999999999999999999999999999999877654322110000000000 0000 000
Q ss_pred CccCCCHHHHHHHHHHCCCeEEEEE--ecCeEEEEEEecC
Q 018740 311 SYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATKP 348 (351)
Q Consensus 311 ~~~~~s~~~l~~ll~~aGf~~v~~~--~~g~~~~~~a~kp 348 (351)
...+++.+++.++++++||++++.. ..|.+.++.|+||
T Consensus 200 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 200 IRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 1246788999999999999988844 4588899999987
No 22
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.82 E-value=9.1e-19 Score=154.69 Aligned_cols=174 Identities=22% Similarity=0.316 Sum_probs=129.8
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
+...+...++.+|||+|||+|.++..+++.++. .+++++|+++.+++.++++.. . ..++.++.+|+.+.+++.+
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~----~~~i~~~~~d~~~~~~~~~ 105 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L----PLNIEFIQADAEALPFEDN 105 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c----CCCceEEecchhcCCCCCC
Confidence 344444446789999999999999999988764 689999999999999998765 2 4678999999999887778
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHH----hh----c--------cCC
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM----MQ----I--------SGS 311 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~----~~----~--------~~~ 311 (351)
+||+|++..+++|+.++..+++++.+.|+|||.+++.+...................+ .. . ...
T Consensus 106 ~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (223)
T TIGR01934 106 SFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESI 185 (223)
T ss_pred cEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHH
Confidence 9999999999999999999999999999999999988775432211111111111100 00 0 001
Q ss_pred ccCCCHHHHHHHHHHCCCeEEE--EEecCeEEEEEEec
Q 018740 312 YTFLSEREIEDLCRACGLVDFK--CTRNRGFVMFTATK 347 (351)
Q Consensus 312 ~~~~s~~~l~~ll~~aGf~~v~--~~~~g~~~~~~a~k 347 (351)
..+++.+++.++|+++||+++. ....+...+++++|
T Consensus 186 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 186 RAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 2467899999999999998766 44455556777765
No 23
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.82 E-value=2.6e-18 Score=156.67 Aligned_cols=154 Identities=23% Similarity=0.286 Sum_probs=120.7
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeE
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V 252 (351)
...++.+|||+|||+|..+..+++. ++..+|+|+|+++.|++.|+++.... + ..++.++.+|++.+++++++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~-g--~~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA-G--YTNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc-C--CCCEEEEEcchhhCCCCCCceeEE
Confidence 3456889999999999988776665 55558999999999999999987765 2 368999999999999888899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEE
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF 332 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v 332 (351)
+++.+++|++++..+++++.++|||||++++.+...... ...........+.. .....++.+++.++++++||..+
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE--LPEEIRNDAELYAG--CVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC--CCHHHHHhHHHHhc--cccCCCCHHHHHHHHHHCCCCce
Confidence 999999999999999999999999999999988765432 11111111111111 12235688999999999999887
Q ss_pred EE
Q 018740 333 KC 334 (351)
Q Consensus 333 ~~ 334 (351)
+.
T Consensus 227 ~i 228 (272)
T PRK11873 227 TI 228 (272)
T ss_pred EE
Confidence 64
No 24
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.81 E-value=1.8e-19 Score=161.81 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=123.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
++.+|||||||+|..+..+++. .+..+++|+|+|+.|++.|++++... +. ..++.++++|+.++|++ .+|+|++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-~~-~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-KA-PTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-CC-CCCeEEEeCChhhCCCC--CCCEEeh
Confidence 4679999999999999888873 45679999999999999999998764 11 34799999999988764 4999999
Q ss_pred ccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh---------------hccCCccCCCH
Q 018740 255 GAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM---------------QISGSYTFLSE 317 (351)
Q Consensus 255 ~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~s~ 317 (351)
+.++||+++. ..++++++++|+|||.+++.+..........+.....+..+. .........+.
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 9999999743 588999999999999999988654322222221111111100 01112335689
Q ss_pred HHHHHHHHHCCCeEEEEEec-CeEEEEEEecCC
Q 018740 318 REIEDLCRACGLVDFKCTRN-RGFVMFTATKPS 349 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v~~~~~-g~~~~~~a~kp~ 349 (351)
++..++|+++||..++++.. ..+..+.|+||.
T Consensus 212 ~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k~~ 244 (247)
T PRK15451 212 ETHKARLHKAGFEHSELWFQCFNFGSLVALKAE 244 (247)
T ss_pred HHHHHHHHHcCchhHHHHHHHHhHHHHhheecc
Confidence 99999999999998875433 334556666654
No 25
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.81 E-value=1.4e-19 Score=137.58 Aligned_cols=95 Identities=35% Similarity=0.579 Sum_probs=84.1
Q ss_pred EEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccC
Q 018740 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 261 (351)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~ 261 (351)
||+|||+|..+..+++. +..+|+|+|+++.+++.++++... .++.+..+|+.++|+++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeec
Confidence 89999999999999999 345999999999999999998653 45669999999999999999999999999999
Q ss_pred CChHHHHHHHHhcccCCcEEEE
Q 018740 262 SSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 262 ~d~~~~l~~i~~~LkpgG~li~ 283 (351)
+++..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999999985
No 26
>PRK08317 hypothetical protein; Provisional
Probab=99.81 E-value=2e-18 Score=153.97 Aligned_cols=164 Identities=29% Similarity=0.324 Sum_probs=127.5
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
+.+...+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++.... ..++.+..+|+..++++
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCCC
Confidence 455666677778899999999999999998875 5679999999999999999874333 57899999999988888
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCC---CcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF---NLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
+++||+|++..+++|+.++..+++++.++|+|||.+++.++..+... ............+.. .....+....+.+
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 162 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD--HFADPWLGRRLPG 162 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh--cCCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999886533211 111122222222221 1234456788999
Q ss_pred HHHHCCCeEEEEEe
Q 018740 323 LCRACGLVDFKCTR 336 (351)
Q Consensus 323 ll~~aGf~~v~~~~ 336 (351)
+++++||.++....
T Consensus 163 ~l~~aGf~~~~~~~ 176 (241)
T PRK08317 163 LFREAGLTDIEVEP 176 (241)
T ss_pred HHHHcCCCceeEEE
Confidence 99999998876443
No 27
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.81 E-value=3.7e-19 Score=159.21 Aligned_cols=154 Identities=13% Similarity=0.145 Sum_probs=117.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
++.+|||+|||+|.++..+++.. +..+++|+|+|+.|++.|++++... + ...++.++++|+.+++++ .+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~-~-~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-H-SEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-C-CCCCeEEEECChhhCCCC--CCCEEee
Confidence 56799999999999999998863 5679999999999999999988764 1 135789999999988764 4899999
Q ss_pred ccccccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh---------------hccCCccCCCH
Q 018740 255 GAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM---------------QISGSYTFLSE 317 (351)
Q Consensus 255 ~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~s~ 317 (351)
..++||+++ +..++++++++|+|||.+++.++.........+.+......+. .........+.
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 999999964 4689999999999999999998754322122222222111111 11124456799
Q ss_pred HHHHHHHHHCCCeEEEE
Q 018740 318 REIEDLCRACGLVDFKC 334 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v~~ 334 (351)
+++.++++++||..++.
T Consensus 209 ~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 209 ETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHcCCchHHH
Confidence 99999999999987763
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.80 E-value=7.4e-19 Score=146.21 Aligned_cols=145 Identities=21% Similarity=0.334 Sum_probs=110.3
Q ss_pred CCCeEEEEcCccCHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~fD~V~ 253 (351)
.+.+|||+|||+|.++..++ +.++..+++|+|+|+.|++.|+++++.. + .++++++++|+.+++ ++ +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~-~--~~ni~~~~~d~~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL-G--LDNIEFIQGDIEDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT-T--STTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc-c--ccccceEEeehhccccccC-CCeeEEE
Confidence 46799999999999999999 4566779999999999999999988776 2 458999999999977 55 7899999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh-ccCCc-cCCCHHHHHHHHHHCC
Q 018740 254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ-ISGSY-TFLSEREIEDLCRACG 328 (351)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~s~~~l~~ll~~aG 328 (351)
+..+++|+.++..+++++.+.|++||.+++..+..... ....+......... ..... .. +.+++..+++++|
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ag 152 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE--LPEQLEELMNLYSEVWSMIYIGN-DKEEWKYILEEAG 152 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH--HHHHHHHHHHHHHHHHHHCC----CCCGHHHHHHHTT
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHH--HHHHHHHHHHHHHHHhhhhhccc-CHHHHHHHHHhcC
Confidence 99999999999999999999999999999988872110 00111111111011 00011 11 7788999999987
No 29
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.79 E-value=4.4e-19 Score=153.90 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=114.9
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCC----CeEEEEecCCCCCCCCCceeeEE
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE----NFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~----~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
+.+|||+|||+|.++..|++.|. +|+|+|+++.|++.|+++..... .... ++++.+.|++.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP-~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDP-VLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCc-hhccccceeeehhhcchhhcc---cccceee
Confidence 46799999999999999999987 99999999999999999854431 1011 3667777877764 4599999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCc-chHHHH-HHHHHhhccCC-ccCCCHHHHHHHHHHCCCe
Q 018740 254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL-IPFSRL-LRQNMMQISGS-YTFLSEREIEDLCRACGLV 330 (351)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~-~~~~s~~~l~~ll~~aGf~ 330 (351)
|..++||+.||..++..+.+.|||||.+++++.+....... .-++.. ..........+ ..+.++.++..+++..|++
T Consensus 164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~ 243 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQ 243 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999987533211 111122 22211111222 3588999999999999998
Q ss_pred EEE
Q 018740 331 DFK 333 (351)
Q Consensus 331 ~v~ 333 (351)
+..
T Consensus 244 v~~ 246 (282)
T KOG1270|consen 244 VND 246 (282)
T ss_pred hhh
Confidence 765
No 30
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.79 E-value=6.7e-18 Score=149.56 Aligned_cols=146 Identities=17% Similarity=0.165 Sum_probs=118.0
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecccc
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 258 (351)
++|||||||+|.++..+++.++..+++|+|+|+.+++.+++++... |. ..++.++..|+...|++ ++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~-gl-~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL-GL-QGRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-CC-CcceEEEecccccCCCC-CCCCEeehHHHH
Confidence 3799999999999999998876679999999999999999988764 22 45789999999776654 589999999999
Q ss_pred ccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEEecC
Q 018740 259 HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR 338 (351)
Q Consensus 259 ~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~g 338 (351)
+|+.++..++++++++|+|||.+++.++..+...... .......+.+..++.++++++||++++....+
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~ 146 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIE-----------HEETTSYLVTREEWAELLARNNLRVVEGVDAS 146 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCcccc-----------ccccccccCCHHHHHHHHHHCCCeEEEeEECc
Confidence 9999999999999999999999999887543211000 00012236789999999999999998866543
No 31
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.78 E-value=9.9e-18 Score=145.38 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=111.8
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++.... + ..++.+..+|+.+++++ +
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~-~ 94 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAE-N--LDNLHTAVVDLNNLTFD-G 94 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHc-C--CCcceEEecChhhCCcC-C
Confidence 344445555678999999999999999999876 9999999999999999987765 2 35688999999887764 5
Q ss_pred ceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeec-cCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 248 SIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYI-VDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
+||+|++..++||++ +...+++++.++|+|||.+++.... .+.. +. ..+....++++++.+++
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~-~~-------------~~~~~~~~~~~el~~~~ 160 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY-PC-------------TVGFPFAFKEGELRRYY 160 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC-CC-------------CCCCCCccCHHHHHHHh
Confidence 799999999999886 4569999999999999997654433 2211 00 00112456889999998
Q ss_pred HHCCCeEEEE
Q 018740 325 RACGLVDFKC 334 (351)
Q Consensus 325 ~~aGf~~v~~ 334 (351)
+ ||+++..
T Consensus 161 ~--~~~~~~~ 168 (197)
T PRK11207 161 E--GWEMVKY 168 (197)
T ss_pred C--CCeEEEe
Confidence 7 8988774
No 32
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.77 E-value=8.6e-18 Score=152.10 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=116.7
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.++++ ..++.++.+|+..+. ++
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~--------~~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR--------LPDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh--------CCCCeEEECchhccC-CC
Confidence 455566666678899999999999999999987777999999999999999886 457889999998765 45
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH------HHHHHhhcc-CCccCCCHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL------LRQNMMQIS-GSYTFLSERE 319 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~s~~~ 319 (351)
++||+|+++.++||++|+..+++++.++|+|||.+++..+..-.. ........ +...+.... ....+.+..+
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 170 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDE-PSHVLMREVAENGPWEQNLPDRGARRAPLPPPHA 170 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCC-HHHHHHHHHHccCchHHHhccccccCcCCCCHHH
Confidence 689999999999999999999999999999999999976432110 00000110 111111110 1234567889
Q ss_pred HHHHHHHCCCeE
Q 018740 320 IEDLCRACGLVD 331 (351)
Q Consensus 320 l~~ll~~aGf~~ 331 (351)
+.+++.++|+.+
T Consensus 171 ~~~~l~~~g~~v 182 (258)
T PRK01683 171 YYDALAPAACRV 182 (258)
T ss_pred HHHHHHhCCCce
Confidence 999999999864
No 33
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=2e-17 Score=147.69 Aligned_cols=163 Identities=17% Similarity=0.189 Sum_probs=131.5
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.++..+|.+|||||||.|.++..+++.+ +.+|+|+++|+++.+.+++++... |. ..++++...|..++.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~-gl-~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAAR-GL-EDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHc-CC-CcccEEEeccccccc--
Confidence 5678888999999999999999999999999997 569999999999999999998887 33 358999999988875
Q ss_pred CCceeeEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 323 (351)
+.||.|++..++||+.. -..+++.++++|+|||.+++.+......... .....+...+- +.....+..++...
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~~~~~i~~yiF---PgG~lPs~~~i~~~ 210 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-RFPDFIDKYIF---PGGELPSISEILEL 210 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-cchHHHHHhCC---CCCcCCCHHHHHHH
Confidence 44999999999999975 7899999999999999999988765432211 22222333322 24456788999999
Q ss_pred HHHCCCeEEEEEecC
Q 018740 324 CRACGLVDFKCTRNR 338 (351)
Q Consensus 324 l~~aGf~~v~~~~~g 338 (351)
.+++||.+.+....+
T Consensus 211 ~~~~~~~v~~~~~~~ 225 (283)
T COG2230 211 ASEAGFVVLDVESLR 225 (283)
T ss_pred HHhcCcEEehHhhhc
Confidence 999999998865544
No 34
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.77 E-value=1.9e-17 Score=149.90 Aligned_cols=164 Identities=20% Similarity=0.194 Sum_probs=115.5
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.++..+|.+|||||||.|.++..+++++ +++|+|+.+|+++.+.+++++... |. ..++++...|..+++.
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~-gl-~~~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREA-GL-EDRVEVRLQDYRDLPG- 126 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS-TS-SSTEEEEES-GGG----
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhc-CC-CCceEEEEeeccccCC-
Confidence 5677888888999999999999999999999994 459999999999999999999877 43 4679999999988763
Q ss_pred CCceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcc--h-HHHHHHHHHhhccCCccCCCHHHH
Q 018740 246 SSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI--P-FSRLLRQNMMQISGSYTFLSEREI 320 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~s~~~l 320 (351)
+||.|++..+++|+. +...+++++.++|+|||++++.+.......... . ....+...+ .+ ....++..++
T Consensus 127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyi--FP-gg~lps~~~~ 201 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYI--FP-GGYLPSLSEI 201 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHT--ST-TS---BHHHH
T ss_pred --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEee--CC-CCCCCCHHHH
Confidence 899999999999995 557999999999999999998777653211000 0 001122222 12 3346788999
Q ss_pred HHHHHHCCCeEEEEEecC
Q 018740 321 EDLCRACGLVDFKCTRNR 338 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~~~g 338 (351)
...+++.||++......+
T Consensus 202 ~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 202 LRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHHTT-EEEEEEE-H
T ss_pred HHHHhcCCEEEEEEEEcC
Confidence 999999999988866544
No 35
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.76 E-value=1.6e-17 Score=138.82 Aligned_cols=161 Identities=21% Similarity=0.298 Sum_probs=121.8
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeE-EEEecCCCCC-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRLP- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~-~~~~d~~~lp- 243 (351)
+..+..++.......|||||||||..-..+-.. |..+|+++|+++.|-+.+.+.+++. ...++. |+.++.+++|
T Consensus 65 Fs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~---k~~~~~~fvva~ge~l~~ 140 (252)
T KOG4300|consen 65 FSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEK---KPLQVERFVVADGENLPQ 140 (252)
T ss_pred HhhhHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhc---cCcceEEEEeechhcCcc
Confidence 344555666665668999999999987766432 3569999999999999999998887 367777 9999999998
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhc----cCCccCCCHHH
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI----SGSYTFLSERE 319 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~ 319 (351)
++++++|+|++..+|....||.+.|+++.|+|+|||++++.+....-. .++..+.+..... ......++ .+
T Consensus 141 l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y----~~~n~i~q~v~ep~~~~~~dGC~lt-rd 215 (252)
T KOG4300|consen 141 LADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEY----GFWNRILQQVAEPLWHLESDGCVLT-RD 215 (252)
T ss_pred cccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccc----hHHHHHHHHHhchhhheeccceEEe-hh
Confidence 889999999999999999999999999999999999999998876422 2222222222221 00111223 45
Q ss_pred HHHHHHHCCCeEEEEE
Q 018740 320 IEDLCRACGLVDFKCT 335 (351)
Q Consensus 320 l~~ll~~aGf~~v~~~ 335 (351)
..+.|+++-|...+..
T Consensus 216 ~~e~Leda~f~~~~~k 231 (252)
T KOG4300|consen 216 TGELLEDAEFSIDSCK 231 (252)
T ss_pred HHHHhhhcccccchhh
Confidence 6678889999887744
No 36
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.76 E-value=1.9e-17 Score=143.34 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=110.2
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++++... ..++.+..+|+...+++ +
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~-~ 93 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKARE----NLPLRTDAYDINAAALN-E 93 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHh----CCCceeEeccchhcccc-C
Confidence 344555555567999999999999999999875 9999999999999999887665 23477888888766654 5
Q ss_pred ceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 248 SIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+||+|++..+++|++ +...+++++.++|+|||++++.+.......+. .......++++++.++++
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~-------------~~~~~~~~~~~el~~~f~ 160 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC-------------HMPFSFTFKEDELRQYYA 160 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC-------------CCCcCccCCHHHHHHHhC
Confidence 799999999999985 34689999999999999976655432211000 011224679999999986
Q ss_pred HCCCeEEEEE
Q 018740 326 ACGLVDFKCT 335 (351)
Q Consensus 326 ~aGf~~v~~~ 335 (351)
+|+++...
T Consensus 161 --~~~~~~~~ 168 (195)
T TIGR00477 161 --DWELLKYN 168 (195)
T ss_pred --CCeEEEee
Confidence 58877643
No 37
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.76 E-value=1.8e-17 Score=147.85 Aligned_cols=141 Identities=28% Similarity=0.425 Sum_probs=116.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
.+.+|||+|||+|.++..+++.++..+++|+|+++.+++.+++++ .+++.++.+|+.+.++++++||+|++.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL-------SENVQFICGDAEKLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-------CCCCeEEecchhhCCCCCCceeEEEEhh
Confidence 356899999999999999999988778999999999999998763 2478899999999988889999999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
++||+.++..+++++.++|+|||.+++.++..+.. ..+...... ....+++.+++.++++.+ |..+..
T Consensus 107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~l~~~-f~~~~~ 174 (240)
T TIGR02072 107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTL-------HELRQSFGQ--HGLRYLSLDELKALLKNS-FELLTL 174 (240)
T ss_pred hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCH-------HHHHHHHHH--hccCCCCHHHHHHHHHHh-cCCcEE
Confidence 99999999999999999999999999988765421 112211111 235678999999999998 876553
No 38
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.76 E-value=5.3e-18 Score=133.38 Aligned_cols=106 Identities=27% Similarity=0.379 Sum_probs=88.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC-CCCCCCCCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~-~~lp~~~~~fD~V~~~ 255 (351)
|+.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+++++... + ..+++.++++|+ .... ..+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~-~~~~i~~~~~d~~~~~~-~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE-G-LSDRITFVQGDAEFDPD-FLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT-T-TTTTEEEEESCCHGGTT-TSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-C-CCCCeEEEECccccCcc-cCCCCCEEEEC
Confidence 477999999999999999999655679999999999999999998443 1 268999999999 3333 24569999999
Q ss_pred c-ccccC---CChHHHHHHHHhcccCCcEEEEEe
Q 018740 256 A-AIHCW---SSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 256 ~-vl~h~---~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
. .++++ .+...+++++.+.|+|||++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 55544 345789999999999999999975
No 39
>PRK06202 hypothetical protein; Provisional
Probab=99.75 E-value=2.8e-17 Score=146.38 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=113.0
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCc
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~ 248 (351)
+...++.+|||+|||+|.++..+++. ++..+++|+|+|+.|++.|+++... .++.+...+...++.++++
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGER 129 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCC
Confidence 33455679999999999998888753 5556999999999999999886432 4567777887777777789
Q ss_pred eeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHH----h---hccCCccCCCHHH
Q 018740 249 IDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM----M---QISGSYTFLSERE 319 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~s~~~ 319 (351)
||+|+++.++||++++. .+++++.++++ |.+++.+...... ....+........ . ....+..+|++++
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~e 206 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-AYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAE 206 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-HHHHHHHHHHHhccCceeeccchHHHHhhcCHHH
Confidence 99999999999999864 79999999998 5666666554310 0000000000000 0 0122356899999
Q ss_pred HHHHHHHCCCeEEEEEecCeEE
Q 018740 320 IEDLCRACGLVDFKCTRNRGFV 341 (351)
Q Consensus 320 l~~ll~~aGf~~v~~~~~g~~~ 341 (351)
+.+++++ ||++...+.+...+
T Consensus 207 l~~ll~~-Gf~~~~~~~~~~~~ 227 (232)
T PRK06202 207 LAALAPQ-GWRVERQWPFRYLL 227 (232)
T ss_pred HHHHhhC-CCeEEeccceeeEE
Confidence 9999999 99987766554433
No 40
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.74 E-value=1.4e-16 Score=147.71 Aligned_cols=163 Identities=15% Similarity=0.132 Sum_probs=122.6
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.+...++.+|||||||+|.++..+++++|..+++++|. +.+++.+++++... |. ..+++++.+|+.+.+++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-gl-~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK-GV-ADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC-Cc-cceEEEEecCccCCCCC
Confidence 34556666666778999999999999999999998889999997 78999999888765 32 46799999999876654
Q ss_pred CCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh---ccCCccCCCHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ---ISGSYTFLSEREI 320 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~l 320 (351)
. +|+|++.+++|++.+. ..+|+++++.|+|||++++.+...+... .+....+...... ......+.+.+++
T Consensus 215 ~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 290 (306)
T TIGR02716 215 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNFDYLSHYILGAGMPFSVLGFKEQARY 290 (306)
T ss_pred C--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--CchhhHHHHHHHHcccccccccCCCHHHH
Confidence 3 6999999999998765 4789999999999999999987654322 1221212211111 0112234468999
Q ss_pred HHHHHHCCCeEEEEE
Q 018740 321 EDLCRACGLVDFKCT 335 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~ 335 (351)
.++|+++||+.++.+
T Consensus 291 ~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 291 KEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHcCCCeeEec
Confidence 999999999988653
No 41
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.73 E-value=1.5e-16 Score=146.01 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=107.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++... ..++.+...|+...++ +++||+|++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~----~l~v~~~~~D~~~~~~-~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKE----NLNIRTGLYDINSASI-QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCceEEEEechhcccc-cCCccEEEEcc
Confidence 356999999999999999999875 9999999999999999988776 3478889999877665 67899999999
Q ss_pred ccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 257 AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 257 vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
+++|+. +...+++++.++|+|||++++.........+ ........+++.++.++++. |++++.
T Consensus 193 vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~-------------~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 193 VLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP-------------CPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC-------------CCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 999986 4468899999999999997776543221100 00112346789999999865 887764
No 42
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.73 E-value=1.3e-16 Score=140.78 Aligned_cols=157 Identities=19% Similarity=0.276 Sum_probs=114.4
Q ss_pred HHHHhccC--CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 167 ELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 167 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
+.+..++. ..++.+|||+|||+|.++..+++.+. +++|+|+|+.|++.|++++... +. ..++.+.++|+..++
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~-~~-~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGR-DV-AGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc-CC-CCceEEEECChhhCC-
Confidence 34444444 34578999999999999999998765 9999999999999999988765 11 247999999998876
Q ss_pred CCCceeeEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh--ccCCccCCCHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLSEREI 320 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~l 320 (351)
++||+|++..+++|++. ...+++++.+++++++++.+.... ........+...+.. ...+..+++.+++
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKT-----AWLAFLKMIGELFPGSSRATSAYLHPMTDL 190 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc-----hHHHHHHHHHhhCcCcccccceEEecHHHH
Confidence 78999999999999864 458899999998876655542111 111111122222211 1223457799999
Q ss_pred HHHHHHCCCeEEEEE
Q 018740 321 EDLCRACGLVDFKCT 335 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~ 335 (351)
.++++++||+++...
T Consensus 191 ~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 191 ERALGELGWKIVREG 205 (219)
T ss_pred HHHHHHcCceeeeee
Confidence 999999999998754
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.72 E-value=1e-15 Score=130.97 Aligned_cols=122 Identities=22% Similarity=0.190 Sum_probs=102.6
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+.+|||+|||+|..+..++...+..+|+|+|+++.|++.|++++... + ..+++++.+|+.+++. .++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~-~--l~~i~~~~~d~~~~~~-~~~fDlV~~~~- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL-G--LKNVTVVHGRAEEFGQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc-C--CCCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence 78999999999999999988777789999999999999999998877 2 3469999999998876 77999999865
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 258 l~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
+.++..++++++++|+|||.+++.... ....++.++.+..|+.+.+.
T Consensus 121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~---------------------------~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 121 ---VASLSDLVELCLPLLKPGGRFLALKGR---------------------------DPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred ---ccCHHHHHHHHHHhcCCCeEEEEEeCC---------------------------ChHHHHHHHHHhcCceEeee
Confidence 457889999999999999999986432 12346778888889987663
No 44
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.71 E-value=4.5e-16 Score=138.70 Aligned_cols=160 Identities=17% Similarity=0.241 Sum_probs=121.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA 245 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~ 245 (351)
+.+...+...++.+|||||||+|.++..+.+.+. +++++|+++.+++.+++++... ...+.+...++...+ ..
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALES----GLKIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHc----CCceEEEecCHHHhhhhc
Confidence 4555555556688999999999999999988765 8999999999999999887665 346788888887764 34
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH-----HHHHHhh-ccCCccCCCHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL-----LRQNMMQ-ISGSYTFLSERE 319 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~s~~~ 319 (351)
.+.||+|++..+++|++++..+++.+.+.|+|||.+++..+.... ....... ....... ...+..+++.++
T Consensus 112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNL---KSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSE 188 (233)
T ss_pred CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCCh---HHHHHHHhhHHHHhhhcCcccCchhhcCCHHH
Confidence 578999999999999999999999999999999999988765321 1000000 0000001 112345789999
Q ss_pred HHHHHHHCCCeEEEEE
Q 018740 320 IEDLCRACGLVDFKCT 335 (351)
Q Consensus 320 l~~ll~~aGf~~v~~~ 335 (351)
+.++++++||+++...
T Consensus 189 ~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 189 LAAWLRQAGLEVQDIT 204 (233)
T ss_pred HHHHHHHCCCeEeeee
Confidence 9999999999988753
No 45
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.69 E-value=1.3e-16 Score=133.95 Aligned_cols=153 Identities=17% Similarity=0.268 Sum_probs=116.1
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-C-CC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PF 244 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-l-p~ 244 (351)
+.+.+++.+ +.+|||+|||.|.++..|.+. .+....|+|++++.+..+.++ .+.++++|++. + .|
T Consensus 5 ~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f 71 (193)
T PF07021_consen 5 QIIAEWIEP--GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADF 71 (193)
T ss_pred HHHHHHcCC--CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhC
Confidence 456677665 789999999999999999886 356999999999999888864 56789999965 4 38
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH--------HHHHHhhccCCccCCC
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL--------LRQNMMQISGSYTFLS 316 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~s 316 (351)
++++||.|+++.+|+++.+|..+|+|+.|+ |...+++.|+...+......+-. +-..|+ ..++.++.|
T Consensus 72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WY-dTPNih~~T 147 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWY-DTPNIHLCT 147 (193)
T ss_pred CCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCccc-CCCCccccc
Confidence 899999999999999999999999998766 66888888875322111000000 000000 233556889
Q ss_pred HHHHHHHHHHCCCeEEEEEe
Q 018740 317 EREIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 317 ~~~l~~ll~~aGf~~v~~~~ 336 (351)
..++++++++.|+++++...
T Consensus 148 i~DFe~lc~~~~i~I~~~~~ 167 (193)
T PF07021_consen 148 IKDFEDLCRELGIRIEERVF 167 (193)
T ss_pred HHHHHHHHHHCCCEEEEEEE
Confidence 99999999999999988543
No 46
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.69 E-value=9.9e-16 Score=141.15 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=108.1
Q ss_pred HHHHHhccCC---CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC--CCCCCCeEEEEecCC
Q 018740 166 FELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVRADIS 240 (351)
Q Consensus 166 ~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--g~~~~~i~~~~~d~~ 240 (351)
.+.+..++.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++++.... +....++.+...|+.
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 3444444432 2567999999999999999999875 99999999999999999876530 001246788888886
Q ss_pred CCCCCCCceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccC--CccCCC
Q 018740 241 RLPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG--SYTFLS 316 (351)
Q Consensus 241 ~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s 316 (351)
.+ +++||+|+|..+++|+++.. .+++.+.+ +.+||.++...+.. .....+..+...+..... ...+++
T Consensus 208 ~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~----~~~~~l~~~g~~~~g~~~~~r~y~~s 279 (315)
T PLN02585 208 SL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKT----LYYDILKRIGELFPGPSKATRAYLHA 279 (315)
T ss_pred hc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcc----hHHHHHHHHHhhcCCCCcCceeeeCC
Confidence 64 47899999999999998653 45666664 45655544322211 111222222222222111 123458
Q ss_pred HHHHHHHHHHCCCeEEEEEe
Q 018740 317 EREIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 317 ~~~l~~ll~~aGf~~v~~~~ 336 (351)
+++++++++++||++.....
T Consensus 280 ~eel~~lL~~AGf~v~~~~~ 299 (315)
T PLN02585 280 EADVERALKKAGWKVARREM 299 (315)
T ss_pred HHHHHHHHHHCCCEEEEEEE
Confidence 99999999999999877443
No 47
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.69 E-value=1.2e-15 Score=135.16 Aligned_cols=150 Identities=18% Similarity=0.277 Sum_probs=116.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC-CCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~ 255 (351)
.+.+|||+|||+|.++..+++.+. .++|+|+++.+++.+++++... + ..++.+...|+.+.+.. .++||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~-~--~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKD-P--LLKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 467999999999999999988765 7999999999999999987765 1 22688999998877644 3789999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH-HHH-HHh----h-ccCCccCCCHHHHHHHHHHCC
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL-LRQ-NMM----Q-ISGSYTFLSEREIEDLCRACG 328 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~-~~~-~~~----~-~~~~~~~~s~~~l~~ll~~aG 328 (351)
++++|+.++..+++++.++|+|||.+++.+++.+. ..+... ... ... . ......+++..++.++++++|
T Consensus 120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 195 (224)
T TIGR01983 120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTP----KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG 195 (224)
T ss_pred hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc----hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence 99999999999999999999999999988765421 111111 000 010 1 111235778999999999999
Q ss_pred CeEEEEE
Q 018740 329 LVDFKCT 335 (351)
Q Consensus 329 f~~v~~~ 335 (351)
|++++..
T Consensus 196 ~~i~~~~ 202 (224)
T TIGR01983 196 LRVKDVK 202 (224)
T ss_pred Ceeeeee
Confidence 9998754
No 48
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.69 E-value=6.3e-17 Score=125.03 Aligned_cols=95 Identities=32% Similarity=0.514 Sum_probs=80.4
Q ss_pred EEEEcCccCHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec-c
Q 018740 181 IIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-A 256 (351)
Q Consensus 181 vLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~-~ 256 (351)
|||+|||+|..+..+.+.. +..+++|+|+|+.|++.++++.... ..+++++++|+.++++.+++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----~~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----GPKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----TTTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----CCceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999885 3469999999999999999998765 458999999999999888999999995 5
Q ss_pred ccccCCCh--HHHHHHHHhcccCCc
Q 018740 257 AIHCWSSP--STGVAEISRVLRPGG 279 (351)
Q Consensus 257 vl~h~~d~--~~~l~~i~~~LkpgG 279 (351)
+++|+.+. ..+++++.++|+|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 59998754 589999999999998
No 49
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.69 E-value=4.9e-16 Score=134.58 Aligned_cols=150 Identities=17% Similarity=0.238 Sum_probs=107.2
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-C-CC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PF 244 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-l-p~ 244 (351)
+.+.+.+. ++.+|||+|||+|.++..+++.. ...++|+|+|+.+++.+++ .+++++++|+.+ + ++
T Consensus 5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----------~~~~~~~~d~~~~l~~~ 71 (194)
T TIGR02081 5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----------RGVNVIQGDLDEGLEAF 71 (194)
T ss_pred HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----------cCCeEEEEEhhhccccc
Confidence 44555554 36799999999999999887664 3478999999999998865 246788899865 4 46
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHH-HHh-------h--ccCCccC
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ-NMM-------Q--ISGSYTF 314 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~-~~~-------~--~~~~~~~ 314 (351)
++++||+|+++.++||++|+..+++++.+.++ .+++..++...+. ........ ... . ...+.++
T Consensus 72 ~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (194)
T TIGR02081 72 PDKSFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFPNFGYWR---VRWSILTKGRMPVTGELPYDWYNTPNIHF 145 (194)
T ss_pred CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCChhHHH---HHHHHHhCCccccCCCCCccccCCCCccc
Confidence 67899999999999999999999999988755 4455544421110 00000000 000 0 1123468
Q ss_pred CCHHHHHHHHHHCCCeEEEEE
Q 018740 315 LSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 315 ~s~~~l~~ll~~aGf~~v~~~ 335 (351)
++.+++.++++++||++++..
T Consensus 146 ~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 146 CTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred CcHHHHHHHHHHCCCEEEEEE
Confidence 899999999999999998844
No 50
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.69 E-value=2.9e-16 Score=131.61 Aligned_cols=142 Identities=17% Similarity=0.166 Sum_probs=101.7
Q ss_pred EEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 205 VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 205 ~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
+|+|+|++|++.|+++..........+++++++|+.++|+++++||+|++..+++|++|+..+|++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998775432000135799999999999999999999999999999999999999999999999999998
Q ss_pred eeccCCCCCcchHHHHHH-------HHHhh----c----cCCccCCCHHHHHHHHHHCCCeEEEEE--ecCeEEEEEEe
Q 018740 285 TYIVDGPFNLIPFSRLLR-------QNMMQ----I----SGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTAT 346 (351)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~-------~~~~~----~----~~~~~~~s~~~l~~ll~~aGf~~v~~~--~~g~~~~~~a~ 346 (351)
++................ ..... + .....+.+++++.++|+++||+.++.. ..|...++++-
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 159 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVAM 159 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEee
Confidence 876532110000000000 00000 0 111357799999999999999887743 45555666553
No 51
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.68 E-value=9.5e-18 Score=129.09 Aligned_cols=97 Identities=27% Similarity=0.398 Sum_probs=66.4
Q ss_pred EEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC--CCCceeeEEeccccc
Q 018740 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--ASSSIDAVHAGAAIH 259 (351)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~--~~~~fD~V~~~~vl~ 259 (351)
||||||+|.++..+.+..+..+++|+|+|+.|++.+++++.... ..+......+..+... ..++||+|++..++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999999777899999999999999988887751 2344444444443321 125899999999999
Q ss_pred cCCChHHHHHHHHhcccCCcEE
Q 018740 260 CWSSPSTGVAEISRVLRPGGVF 281 (351)
Q Consensus 260 h~~d~~~~l~~i~~~LkpgG~l 281 (351)
|++++..++++++++|+|||+|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999986
No 52
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.67 E-value=6.9e-15 Score=126.60 Aligned_cols=134 Identities=19% Similarity=0.145 Sum_probs=105.5
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
...+...+...++.+|||+|||+|.++..+++.++..+|+++|+++.+++.+++++... + ..++.++.+|+.. ++
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~-~--~~~i~~~~~d~~~-~~- 94 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF-G--CGNIDIIPGEAPI-EL- 94 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh-C--CCCeEEEecCchh-hc-
Confidence 34455666666788999999999999999999887789999999999999999988765 2 3578999988742 33
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
.++||+|++....++ ...+++++.+.|+|||++++..... -+..++.++++
T Consensus 95 ~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~--------------------------~~~~~~~~~l~ 145 (187)
T PRK08287 95 PGKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILL--------------------------ENLHSALAHLE 145 (187)
T ss_pred CcCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEecH--------------------------hhHHHHHHHHH
Confidence 357999999876543 4678999999999999998854321 13457778999
Q ss_pred HCCCeEEE
Q 018740 326 ACGLVDFK 333 (351)
Q Consensus 326 ~aGf~~v~ 333 (351)
+.||..++
T Consensus 146 ~~g~~~~~ 153 (187)
T PRK08287 146 KCGVSELD 153 (187)
T ss_pred HCCCCcce
Confidence 99997655
No 53
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.67 E-value=3.1e-15 Score=127.85 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=110.1
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
.+...+...++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.+++++... ..+++++.+|+.+.+ .+
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~--~~ 81 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN----NVGLDVVMTDLFKGV--RG 81 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc----CCceEEEEccccccc--CC
Confidence 344444445567999999999999999999886 9999999999999999998766 457889999987654 45
Q ss_pred ceeeEEeccccccCCC---------------------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh
Q 018740 248 SIDAVHAGAAIHCWSS---------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM 306 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d---------------------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~ 306 (351)
+||+|+++..+++.++ ...+++++.++|+|||.+++......
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------- 144 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------- 144 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------
Confidence 8999999988776653 24679999999999999998765421
Q ss_pred hccCCccCCCHHHHHHHHHHCCCeEEEEEecCe
Q 018740 307 QISGSYTFLSEREIEDLCRACGLVDFKCTRNRG 339 (351)
Q Consensus 307 ~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~g~ 339 (351)
...++.+.+++.||........+.
T Consensus 145 ---------~~~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 145 ---------GEPDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred ---------ChHHHHHHHHhCCCeEEEEEEeec
Confidence 256788999999998877655544
No 54
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.66 E-value=3.6e-16 Score=131.78 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=120.4
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+...+......+|.|+|||+|..+..|+++.|...++|+|-|++|++.|+++ .++++|..+|+.... +.
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-p~ 90 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-PE 90 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-CC
Confidence 356666777778899999999999999999999999999999999999999887 689999999999875 46
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH------HHHHHhh-ccCCccCCCHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL------LRQNMMQ-ISGSYTFLSERE 319 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~s~~~ 319 (351)
...|+++++.+|++++|-..+|..+...|.|||+|.+..|..-.. +....... +...+.. ........+...
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-psH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~ 169 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDE-PSHRLMRETADEAPFAQELGGRGLTRAPLPSPAA 169 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCc-hhHHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence 789999999999999999999999999999999999988753211 11111111 1111111 011345667888
Q ss_pred HHHHHHHCCCeE
Q 018740 320 IEDLCRACGLVD 331 (351)
Q Consensus 320 l~~ll~~aGf~~ 331 (351)
+-++|...+-++
T Consensus 170 Yy~lLa~~~~rv 181 (257)
T COG4106 170 YYELLAPLACRV 181 (257)
T ss_pred HHHHhCccccee
Confidence 888888776553
No 55
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.66 E-value=3.1e-15 Score=132.95 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=105.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||||||+|.++..+++.+. .|+|+|+|+.|++.|++++... +. ..++.+..+|+.. .+++||+|++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~-~~-~~~i~~~~~d~~~---~~~~fD~v~~~ 134 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEA-GL-AGNITFEVGDLES---LLGRFDTVVCL 134 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc-CC-ccCcEEEEcCchh---ccCCcCEEEEc
Confidence 4567999999999999999998876 8999999999999999987665 11 2478999988543 46789999999
Q ss_pred cccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh--ccCCccCCCHHHHHHHHHHCCCeE
Q 018740 256 AAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLSEREIEDLCRACGLVD 331 (351)
Q Consensus 256 ~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~l~~ll~~aGf~~ 331 (351)
.+++|++++ ..+++++.+.++++++ +...+.. ........+...+.. ......+++..++.++++++||++
T Consensus 135 ~~l~~~~~~~~~~~l~~l~~~~~~~~~-i~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 135 DVLIHYPQEDAARMLAHLASLTRGSLI-FTFAPYT----PLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred chhhcCCHHHHHHHHHHHHhhcCCeEE-EEECCcc----HHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 999998765 4778888887654443 3322111 111111111111111 112345678999999999999998
Q ss_pred EEEEe
Q 018740 332 FKCTR 336 (351)
Q Consensus 332 v~~~~ 336 (351)
++...
T Consensus 210 ~~~~~ 214 (230)
T PRK07580 210 VRTER 214 (230)
T ss_pred Eeeee
Confidence 87543
No 56
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.66 E-value=4.4e-15 Score=129.90 Aligned_cols=140 Identities=21% Similarity=0.186 Sum_probs=103.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh---------CCCCCCCeEEEEecCCCCCCC-
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPKENFLLVRADISRLPFA- 245 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---------~g~~~~~i~~~~~d~~~lp~~- 245 (351)
.++++|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+..... .-....+++++++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 3567999999999999999999988 9999999999999864432110 000135789999999887643
Q ss_pred CCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 323 (351)
.+.||.|+...+++|++.. ...++.+.++|||||++++.+...+.... .+.....+.+++.++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~---------------~gpp~~~~~~eL~~~ 175 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM---------------AGPPFSVSPAEVEAL 175 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC---------------CCcCCCCCHHHHHHH
Confidence 4679999999999999643 47899999999999998888776431100 011235789999998
Q ss_pred HHHCCCeEEE
Q 018740 324 CRACGLVDFK 333 (351)
Q Consensus 324 l~~aGf~~v~ 333 (351)
+.. +|.+..
T Consensus 176 f~~-~~~i~~ 184 (213)
T TIGR03840 176 YGG-HYEIEL 184 (213)
T ss_pred hcC-CceEEE
Confidence 874 454433
No 57
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.66 E-value=1.7e-15 Score=148.93 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=115.3
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC--CCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RLPF 244 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~--~lp~ 244 (351)
..+...+...++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++.... .+++.++++|+. .+++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLNI 99 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccCC
Confidence 4556666666677999999999999999999865 999999999999987653211 468999999996 4677
Q ss_pred CCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
++++||+|++..+++|+++. ..+++++.++|||||++++.+.......... ......++.+...+.+
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 168 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK-----------RKNNPTHYREPRFYTK 168 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc-----------ccCCCCeecChHHHHH
Confidence 78899999999999999874 6899999999999999999775432110000 0111234556789999
Q ss_pred HHHHCCCeEEE
Q 018740 323 LCRACGLVDFK 333 (351)
Q Consensus 323 ll~~aGf~~v~ 333 (351)
++.++||....
T Consensus 169 ~f~~~~~~~~~ 179 (475)
T PLN02336 169 VFKECHTRDED 179 (475)
T ss_pred HHHHheeccCC
Confidence 99999998765
No 58
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.65 E-value=5.7e-15 Score=124.29 Aligned_cols=154 Identities=14% Similarity=0.177 Sum_probs=109.6
Q ss_pred HhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCce
Q 018740 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249 (351)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~f 249 (351)
...++...-.++||+|||.|.++..|+.+.. +++++|+|+.+++.|++++... ++++++++|+.+. .+.++|
T Consensus 36 ~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~~-~P~~~F 107 (201)
T PF05401_consen 36 LAALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGL-----PHVEWIQADVPEF-WPEGRF 107 (201)
T ss_dssp HHHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-E
T ss_pred HHhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCCC-CCCCCe
Confidence 3346665667999999999999999999975 9999999999999999998764 7999999999775 367899
Q ss_pred eeEEeccccccCCCh---HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHH
Q 018740 250 DAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 326 (351)
Q Consensus 250 D~V~~~~vl~h~~d~---~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~ 326 (351)
|+|++..+++++.+. ..+++.+.+.|+|||.+++.++... .... -.+.+..+.+.++|.+
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~--------------~c~~---wgh~~ga~tv~~~~~~ 170 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA--------------NCRR---WGHAAGAETVLEMLQE 170 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH--------------HHHH---TT-S--HHHHHHHHHH
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC--------------cccc---cCcccchHHHHHHHHH
Confidence 999999999999764 3789999999999999999776421 1111 1134588999999998
Q ss_pred CCCeEEEEEe------cCeEEEEEEecCC
Q 018740 327 CGLVDFKCTR------NRGFVMFTATKPS 349 (351)
Q Consensus 327 aGf~~v~~~~------~g~~~~~~a~kp~ 349 (351)
. |..|+... +....+...+||.
T Consensus 171 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (201)
T PF05401_consen 171 H-LTEVERVECRGGSPNEDCLLARFRNPV 198 (201)
T ss_dssp H-SEEEEEEEEE-SSTTSEEEEEEEE--S
T ss_pred H-hhheeEEEEcCCCCCCceEeeeecCCc
Confidence 5 76666332 2345666677764
No 59
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.65 E-value=5.8e-15 Score=126.04 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=85.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++.+|||+|||+|.++..++..++..+|+|+|+|+.|++.++++++.. + ..+++++++|+.+++ ..++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~-~--~~~i~~i~~d~~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL-G--LNNVEIVNGRAEDFQ-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh-C--CCCeEEEecchhhcc-ccCCccEEEehh
Confidence 367999999999999999988877779999999999999999887765 2 357999999998875 367899999876
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
+.+....++.+.++|+|||.+++.
T Consensus 118 ----~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 ----LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ----hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 345667889999999999999975
No 60
>PRK04266 fibrillarin; Provisional
Probab=99.64 E-value=1.2e-14 Score=128.24 Aligned_cols=148 Identities=12% Similarity=0.121 Sum_probs=105.6
Q ss_pred ccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC----CCCCC
Q 018740 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASS 247 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~ 247 (351)
.+...++.+|||+|||+|.++..+++..+...|+|+|+++.|++.+.+++... .++.++.+|+... ++ .+
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l-~~ 140 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHV-VE 140 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhc-cc
Confidence 46777889999999999999999998754568999999999999887765442 6789999998652 22 25
Q ss_pred ceeeEEeccccccCCChH---HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 248 SIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~---~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
+||+|++. +.+|. .+++++.++|||||.++++.+..... .... +... . ++..+++
T Consensus 141 ~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d-~~~~--------------~~~~-~-~~~~~~l 198 (226)
T PRK04266 141 KVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSID-VTKD--------------PKEI-F-KEEIRKL 198 (226)
T ss_pred cCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccccc-CcCC--------------HHHH-H-HHHHHHH
Confidence 69999843 44443 45899999999999999964432100 0000 0011 1 3445999
Q ss_pred HHCCCeEEEEEecCe----EEEEEEec
Q 018740 325 RACGLVDFKCTRNRG----FVMFTATK 347 (351)
Q Consensus 325 ~~aGf~~v~~~~~g~----~~~~~a~k 347 (351)
+++||+.++.+..+. +.++.+++
T Consensus 199 ~~aGF~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 199 EEGGFEILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred HHcCCeEEEEEcCCCCcCCeEEEEEEc
Confidence 999999999766542 46666654
No 61
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.64 E-value=4.7e-15 Score=140.88 Aligned_cols=157 Identities=19% Similarity=0.159 Sum_probs=116.4
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|+++... .++++...|...+
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l--- 225 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---
Confidence 4556666777788999999999999999998864 35999999999999999988632 3578888888765
Q ss_pred CCceeeEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCCC-CcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
+++||+|++..+++|+.+ +..+++++.++|||||.+++.+...+... ....+.. ... .+ .....+.+++..
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~---~yi--fp-~g~lps~~~i~~ 299 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWIN---KYI--FP-NGCLPSVRQIAQ 299 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCce---eee--cC-CCcCCCHHHHHH
Confidence 468999999999999964 46899999999999999999877544221 1112211 110 11 223567888888
Q ss_pred HHHHCCCeEEEEEecCe
Q 018740 323 LCRACGLVDFKCTRNRG 339 (351)
Q Consensus 323 ll~~aGf~~v~~~~~g~ 339 (351)
+++ .||.+.+....+.
T Consensus 300 ~~~-~~~~v~d~~~~~~ 315 (383)
T PRK11705 300 ASE-GLFVMEDWHNFGA 315 (383)
T ss_pred HHH-CCcEEEEEecChh
Confidence 766 5898877655443
No 62
>PRK06922 hypothetical protein; Provisional
Probab=99.63 E-value=3e-15 Score=147.04 Aligned_cols=107 Identities=22% Similarity=0.365 Sum_probs=93.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~fD~V~~ 254 (351)
++.+|||+|||+|.++..+++..+..+++|+|+|+.|++.|+++.... ..++.++++|+.++| +++++||+|++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 578999999999999999998888889999999999999999876554 457888999998887 77899999999
Q ss_pred ccccccCC-------------ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 255 GAAIHCWS-------------SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 255 ~~vl~h~~-------------d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+.++||+. ++..+|+++.++|||||.+++.+..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 99998762 4578999999999999999998753
No 63
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.62 E-value=5e-15 Score=128.93 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=90.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC-CCCC--CCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLP--FASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~-~~lp--~~~~~fD~V~ 253 (351)
++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+++++... + ..++.++++|+ ..++ +++++||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~-~--~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE-G--LTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc-C--CCCEEEEecCHHHHHHHHcCccccceEE
Confidence 467999999999999999998877779999999999999999988765 2 36899999999 7766 6678999999
Q ss_pred eccccccCC--------ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 254 AGAAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~vl~h~~--------d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+.....+.. ....+++++.++|+|||.+++.+..
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 876543221 1467899999999999999997654
No 64
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.62 E-value=8.6e-15 Score=127.40 Aligned_cols=102 Identities=13% Similarity=0.185 Sum_probs=85.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++.+|||+|||+|.++..+++..+..+++|+|+|+.|++.|+++ .+++.+.++|+.+ |+++++||+|++..
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~--------~~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY--------LPNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh--------CCCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 46789999999999999998875556999999999999999875 3567788999888 88899999999999
Q ss_pred ccccCC--ChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 257 AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 257 vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
+++|++ +...+++++.+++ ++.+++.+...+
T Consensus 114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 999995 2357889999987 567777776543
No 65
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.61 E-value=1.6e-14 Score=115.40 Aligned_cols=114 Identities=23% Similarity=0.186 Sum_probs=91.7
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA 245 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~~ 245 (351)
..+...+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+++++... ...++.++.+|+.. ++..
T Consensus 9 ~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~ 85 (124)
T TIGR02469 9 ALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF---GVSNIVIVEGDAPEALEDS 85 (124)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh---CCCceEEEeccccccChhh
Confidence 3445555555677999999999999999999876679999999999999999987765 24578899888765 3333
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.++||+|++....++ ...+++++.+.|+|||.+++...
T Consensus 86 ~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEec
Confidence 468999999776543 35889999999999999998653
No 66
>PLN03075 nicotianamine synthase; Provisional
Probab=99.61 E-value=4.6e-14 Score=127.70 Aligned_cols=147 Identities=12% Similarity=0.150 Sum_probs=107.9
Q ss_pred CCCeEEEEcCccCHHHHH--HHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRI--FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~--l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
++.+|+|||||.|.++.. ++..++..+++|+|+++.+++.|++.+....+. ..++.|..+|+.+.+...+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-SKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-cCCcEEEECchhhcccccCCcCEEEE
Confidence 678999999998854433 334577789999999999999999988542122 56899999999886533578999999
Q ss_pred ccccccC--CChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEE
Q 018740 255 GAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF 332 (351)
Q Consensus 255 ~~vl~h~--~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v 332 (351)
. +++++ .++.++++++.+.|+|||++++..... .+.. -+...++++++ ||++.
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G------------~r~~------LYp~v~~~~~~------gf~~~ 256 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHG------------ARAF------LYPVVDPCDLR------GFEVL 256 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEecccc------------hHhh------cCCCCChhhCC------CeEEE
Confidence 9 99988 688999999999999999999965311 1111 12233444443 99988
Q ss_pred EEEe-cCe--EEEEEEecCC
Q 018740 333 KCTR-NRG--FVMFTATKPS 349 (351)
Q Consensus 333 ~~~~-~g~--~~~~~a~kp~ 349 (351)
.++. .+. -.++.++|+.
T Consensus 257 ~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 257 SVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred EEECCCCCceeeEEEEEeec
Confidence 7543 332 3666777764
No 67
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.61 E-value=1.1e-14 Score=123.95 Aligned_cols=143 Identities=19% Similarity=0.247 Sum_probs=103.0
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCc
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~ 248 (351)
+.+.++..+++++||+|||.|+.+..|++.|. .|+++|.|+..++.+++.+... ...+.....|+....++ +.
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~----~l~i~~~~~Dl~~~~~~-~~ 94 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEE----GLDIRTRVADLNDFDFP-EE 94 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHT----T-TEEEEE-BGCCBS-T-TT
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhc----CceeEEEEecchhcccc-CC
Confidence 34445555678999999999999999999998 9999999999999998877666 55699999999888764 67
Q ss_pred eeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHH
Q 018740 249 IDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 326 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~ 326 (351)
||+|++..+++|+..+ ..+++.+...++|||++++.+.... .....+ ......+.+.++...+.
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~-~d~p~~------------~~~~f~~~~~EL~~~y~- 160 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMET-PDYPCP------------SPFPFLLKPGELREYYA- 160 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB---SSS--S------------S--S--B-TTHHHHHTT-
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc-CCCCCC------------CCCCcccCHHHHHHHhC-
Confidence 9999999999998644 4789999999999999998776432 111000 01223456678888776
Q ss_pred CCCeEEE
Q 018740 327 CGLVDFK 333 (351)
Q Consensus 327 aGf~~v~ 333 (351)
||++++
T Consensus 161 -dW~il~ 166 (192)
T PF03848_consen 161 -DWEILK 166 (192)
T ss_dssp -TSEEEE
T ss_pred -CCeEEE
Confidence 687776
No 68
>PRK14968 putative methyltransferase; Provisional
Probab=99.60 E-value=7e-14 Score=120.17 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=107.7
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+...+...++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.+++++... +....++.++.+|+.+. +.+
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~~-~~~ 88 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLN-NIRNNGVEVIRSDLFEP-FRG 88 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHc-CCCCcceEEEecccccc-ccc
Confidence 344455544567899999999999999999885 49999999999999999988765 22112288889988663 345
Q ss_pred CceeeEEeccccccC-----------------C----ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCW-----------------S----SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM 305 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~-----------------~----d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~ 305 (351)
++||+|+++..+.+. . ....+++++.++|+|||.+++..+.
T Consensus 89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------------------ 150 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------------------ 150 (188)
T ss_pred cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc------------------
Confidence 589999987554321 1 1346799999999999998876432
Q ss_pred hhccCCccCCCHHHHHHHHHHCCCeEEEE----EecCeEEEEEEe
Q 018740 306 MQISGSYTFLSEREIEDLCRACGLVDFKC----TRNRGFVMFTAT 346 (351)
Q Consensus 306 ~~~~~~~~~~s~~~l~~ll~~aGf~~v~~----~~~g~~~~~~a~ 346 (351)
....+++.++++++||++... ...+...+..++
T Consensus 151 --------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T PRK14968 151 --------LTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELV 187 (188)
T ss_pred --------cCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEe
Confidence 123467889999999987663 233444444444
No 69
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.60 E-value=3.8e-14 Score=127.56 Aligned_cols=133 Identities=20% Similarity=0.318 Sum_probs=101.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++..+ +. ...+.+..+ +.+||+|+++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~-~~-~~~~~~~~~--------~~~fD~Vvan 186 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELN-GV-ELNVYLPQG--------DLKADVIVAN 186 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc-CC-CceEEEccC--------CCCcCEEEEc
Confidence 3578999999999999998888775 36999999999999999988765 21 122332222 2279999987
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
...+. ...++.++.++|||||.++++....+ ..+++.+.+++.||.+++..
T Consensus 187 i~~~~---~~~l~~~~~~~LkpgG~lilsgi~~~--------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 187 ILANP---LLELAPDLARLLKPGGRLILSGILEE--------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred CcHHH---HHHHHHHHHHhcCCCcEEEEEECcHh--------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 54322 35778999999999999999754321 34678899999999999988
Q ss_pred ecCeEEEEEEecC
Q 018740 336 RNRGFVMFTATKP 348 (351)
Q Consensus 336 ~~g~~~~~~a~kp 348 (351)
..+.|..+.++|+
T Consensus 238 ~~~~W~~~~~~~~ 250 (250)
T PRK00517 238 ERGEWVALVGKKK 250 (250)
T ss_pred EeCCEEEEEEEeC
Confidence 8888888888774
No 70
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.60 E-value=4.1e-14 Score=124.23 Aligned_cols=142 Identities=19% Similarity=0.155 Sum_probs=103.1
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh---------CCCCCCCeEEEEecCCCCCC
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---------~g~~~~~i~~~~~d~~~lp~ 244 (351)
...++++|||+|||.|..+..|++.|. +|+|+|+|+.+++.+.+..... .-....++.+.++|+.+++.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 334567999999999999999999987 9999999999999874321100 00013578999999998854
Q ss_pred C-CCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 245 A-SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 245 ~-~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
. .+.||.|+...+++|++.. ...++.+.++|+|||++++.+........ .+.-..++.+++.
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~---------------~gPp~~~~~~el~ 176 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL---------------AGPPFSVSDEEVE 176 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC---------------CCCCCCCCHHHHH
Confidence 3 2589999999999999643 48899999999999986665554321100 0112367999999
Q ss_pred HHHHHCCCeEEE
Q 018740 322 DLCRACGLVDFK 333 (351)
Q Consensus 322 ~ll~~aGf~~v~ 333 (351)
+++.. +|.+..
T Consensus 177 ~~~~~-~~~i~~ 187 (218)
T PRK13255 177 ALYAG-CFEIEL 187 (218)
T ss_pred HHhcC-CceEEE
Confidence 99964 254443
No 71
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.59 E-value=1.8e-13 Score=118.88 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=91.3
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFA 245 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~~ 245 (351)
.....+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.+++++... +. ..++.++.+|+.+. +..
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~-g~-~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF-GV-LNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-CC-CCCeEEEEechhhhHhhc
Confidence 3445667778899999999999999988765 44568999999999999999988776 21 36789999998763 333
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+.||.|++.. ...++..+++++.++|+|||++++...
T Consensus 109 ~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 109 NEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 46899999854 245778899999999999999987544
No 72
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.59 E-value=3.7e-14 Score=116.44 Aligned_cols=132 Identities=20% Similarity=0.350 Sum_probs=108.2
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
..+|||+|||+|.++..|++.+.....+|+|.|+.+++.|+..+... +. ...|+|.+.|+.+..+..++||+|+--+.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~-~~-~n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD-GF-SNEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc-CC-CcceeEEEeeccCCcccccceeEEeecCc
Confidence 34999999999999999999987777999999999999998877665 32 23399999999988888899999997776
Q ss_pred cccCC---C-----hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCC
Q 018740 258 IHCWS---S-----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 329 (351)
Q Consensus 258 l~h~~---d-----~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf 329 (351)
+..+. | +...+..+.++|+|||+++|+.- .|+.+++.+.++..||
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC---------------------------N~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC---------------------------NFTKDELVEEFENFNF 198 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec---------------------------CccHHHHHHHHhcCCe
Confidence 65442 2 23567889999999999999643 3588999999999999
Q ss_pred eEEEEEecC
Q 018740 330 VDFKCTRNR 338 (351)
Q Consensus 330 ~~v~~~~~g 338 (351)
+....++..
T Consensus 199 ~~~~tvp~p 207 (227)
T KOG1271|consen 199 EYLSTVPTP 207 (227)
T ss_pred EEEEeeccc
Confidence 988866544
No 73
>PRK14967 putative methyltransferase; Provisional
Probab=99.59 E-value=4e-14 Score=125.26 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=111.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
...++.+|||+|||+|.++..+++.+ ..+++++|+|+.+++.+++++... ..++.++.+|+... +++++||+|+
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~----~~~~~~~~~d~~~~-~~~~~fD~Vi 106 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA----GVDVDVRRGDWARA-VEFRPFDVVV 106 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh----CCeeEEEECchhhh-ccCCCeeEEE
Confidence 34557899999999999999998875 358999999999999999988765 34688899998663 4567899999
Q ss_pred eccccccCCC---------------------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh---hcc
Q 018740 254 AGAAIHCWSS---------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM---QIS 309 (351)
Q Consensus 254 ~~~vl~h~~d---------------------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 309 (351)
++--...-.. ...+++++.++|||||.+++....... .......+...-. ...
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~---~~~~~~~l~~~g~~~~~~~ 183 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG---VERTLTRLSEAGLDAEVVA 183 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC---HHHHHHHHHHCCCCeEEEE
Confidence 9743221111 245788999999999999986554321 1122222221100 111
Q ss_pred CCccCCCHHH--HHHHHHHCCCeEEEEEecCeEEEEEEecC
Q 018740 310 GSYTFLSERE--IEDLCRACGLVDFKCTRNRGFVMFTATKP 348 (351)
Q Consensus 310 ~~~~~~s~~~--l~~ll~~aGf~~v~~~~~g~~~~~~a~kp 348 (351)
.+...|.... ...++++.||... -.+....+++.|+||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 223 (223)
T PRK14967 184 SQWIPFGPVLRARAAWLERRGLLPP-GQREEELVVIRADKP 223 (223)
T ss_pred eeccCccHHHHHHHHHHHHcCCCCC-CCceEEEEEEEeecC
Confidence 1222344432 4478899999855 334455677788887
No 74
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.58 E-value=4.3e-15 Score=126.26 Aligned_cols=171 Identities=20% Similarity=0.180 Sum_probs=123.0
Q ss_pred cCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEE
Q 018740 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 235 (351)
Q Consensus 156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~ 235 (351)
+-+|..|..+.++|.. +...+-.++||+|||||.....+...-. +++|+|+|.+|++.|.++ ..--.+.
T Consensus 105 kL~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eK--------g~YD~L~ 173 (287)
T COG4976 105 KLGYSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEK--------GLYDTLY 173 (287)
T ss_pred HhcCccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhc--------cchHHHH
Confidence 3455555555555544 3444467999999999999999988866 899999999999999886 2222345
Q ss_pred EecCCCC-C-CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCcc
Q 018740 236 RADISRL-P-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT 313 (351)
Q Consensus 236 ~~d~~~l-p-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (351)
++++..+ + ..+..||+|++..|+-++.+.+.++..+...|+|||.+.++.-...++.... +. +....
T Consensus 174 ~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~--l~---------ps~Ry 242 (287)
T COG4976 174 VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFV--LG---------PSQRY 242 (287)
T ss_pred HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCee--cc---------hhhhh
Confidence 5555432 2 3467899999999999999999999999999999999999887665432110 00 00112
Q ss_pred CCCHHHHHHHHHHCCCeEEEEEecC---------eEEEEEEecC
Q 018740 314 FLSEREIEDLCRACGLVDFKCTRNR---------GFVMFTATKP 348 (351)
Q Consensus 314 ~~s~~~l~~ll~~aGf~~v~~~~~g---------~~~~~~a~kp 348 (351)
--++..++.+++..||.++.+.... .-..|+++||
T Consensus 243 AH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 243 AHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred ccchHHHHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecC
Confidence 2367789999999999998854321 2356677776
No 75
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.57 E-value=2e-14 Score=130.08 Aligned_cols=109 Identities=16% Similarity=0.228 Sum_probs=85.3
Q ss_pred CCCeEEEEcCccCH----HHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHhhh---CCC-----------------
Q 018740 177 LGGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQE---SNF----------------- 227 (351)
Q Consensus 177 ~~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~---~g~----------------- 227 (351)
++.+|||+|||+|. ++..+++.++ ..+|+|+|+|+.|++.|++.+-.. ++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999997 3444555432 458999999999999999853100 000
Q ss_pred ----CCCCeEEEEecCCCCCCCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEe
Q 018740 228 ----PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 228 ----~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~ 285 (351)
...++.|.+.|+.+.+++.++||+|+|.++++|++++ ..++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0137899999999988778899999999999999755 479999999999999999843
No 76
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.57 E-value=5.4e-14 Score=122.74 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=91.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
...+.+.+...++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++... +. ..++.++.+|+.+...
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~-~~-~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL-GY-WGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-CC-CCcEEEEECCcccCCc
Confidence 4566677777778899999999999998888763 2458999999999999999988765 21 2368999999977544
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..++||+|++..+++|++ .++.++|+|||++++..
T Consensus 139 ~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 567899999999988775 46889999999998753
No 77
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.5e-13 Score=123.86 Aligned_cols=154 Identities=19% Similarity=0.314 Sum_probs=115.1
Q ss_pred CCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEec
Q 018740 159 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238 (351)
Q Consensus 159 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d 238 (351)
++...-.++.+..++. ++.+|||+|||+|.++.+.++.|. .+++|+|++|.+++.+++++..+ +. ...+.....+
T Consensus 146 HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N-~v-~~~~~~~~~~ 220 (300)
T COG2264 146 HPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLN-GV-ELLVQAKGFL 220 (300)
T ss_pred ChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHc-CC-chhhhccccc
Confidence 3444445666666665 588999999999999999999985 57999999999999999998887 22 1112222223
Q ss_pred CCCCCCCCCceeeEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCH
Q 018740 239 ISRLPFASSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE 317 (351)
Q Consensus 239 ~~~lp~~~~~fD~V~~~~vl~h~~d~-~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 317 (351)
....+ ..++||+|+++-. .++ ..+...+.+.|||||+++++....+ -.
T Consensus 221 ~~~~~-~~~~~DvIVANIL----A~vl~~La~~~~~~lkpgg~lIlSGIl~~--------------------------q~ 269 (300)
T COG2264 221 LLEVP-ENGPFDVIVANIL----AEVLVELAPDIKRLLKPGGRLILSGILED--------------------------QA 269 (300)
T ss_pred chhhc-ccCcccEEEehhh----HHHHHHHHHHHHHHcCCCceEEEEeehHh--------------------------HH
Confidence 32222 2368999998753 334 3778899999999999999764321 14
Q ss_pred HHHHHHHHHCCCeEEEEEecCeEEEEEEecC
Q 018740 318 REIEDLCRACGLVDFKCTRNRGFVMFTATKP 348 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v~~~~~g~~~~~~a~kp 348 (351)
+.+.+.++++||.++++...+.|..+.++|+
T Consensus 270 ~~V~~a~~~~gf~v~~~~~~~eW~~i~~kr~ 300 (300)
T COG2264 270 ESVAEAYEQAGFEVVEVLEREEWVAIVGKRK 300 (300)
T ss_pred HHHHHHHHhCCCeEeEEEecCCEEEEEEEcC
Confidence 5788999999999999888888888888774
No 78
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.54 E-value=1.3e-13 Score=120.98 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=91.2
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
....+...+...++.+|||||||+|.++..+++. ++..+|+++|+++.+++.+++++... | ..++.++.+|.....
T Consensus 64 ~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~-g--~~~v~~~~gd~~~~~ 140 (212)
T PRK13942 64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL-G--YDNVEVIVGDGTLGY 140 (212)
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCCeEEEECCcccCC
Confidence 3456667777778899999999999999888876 33469999999999999999998876 2 468999999997765
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
.+.+.||+|++....++++ +.+.+.|||||++++.
T Consensus 141 ~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 141 EENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEE
Confidence 5678899999988776653 4567789999998884
No 79
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.54 E-value=3.6e-13 Score=121.22 Aligned_cols=139 Identities=21% Similarity=0.255 Sum_probs=104.8
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
..+.+...+.. .+.+|||+|||+|.++..+++..+..+++|+|+++.+++.+++++... + ..++.++.+|+.+ ++
T Consensus 76 l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~--~~~~~~~~~d~~~-~~ 150 (251)
T TIGR03534 76 LVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL-G--LDNVTFLQSDWFE-PL 150 (251)
T ss_pred HHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCeEEEEECchhc-cC
Confidence 34444544442 346899999999999999999877779999999999999999988765 2 3479999999876 45
Q ss_pred CCCceeeEEecccc------ccCC------C--------------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHH
Q 018740 245 ASSSIDAVHAGAAI------HCWS------S--------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS 298 (351)
Q Consensus 245 ~~~~fD~V~~~~vl------~h~~------d--------------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~ 298 (351)
++++||+|+++-.. +++. + ...+++++.++|+|||.+++...
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------------ 218 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------------ 218 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC------------
Confidence 57899999985322 1111 0 13568899999999999988431
Q ss_pred HHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 299 RLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 299 ~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
+...+++.++++++||..++..
T Consensus 219 ---------------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 219 ---------------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred ---------------ccHHHHHHHHHHhCCCCceEEE
Confidence 1234678999999999887754
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.53 E-value=6.1e-14 Score=121.38 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=88.6
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---CCCCceeeEEe
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVHA 254 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~~fD~V~~ 254 (351)
..+|||||||+|.++..+++..+...++|+|+++.+++.|++++... + ..++.++++|+.+++ ++++++|.|++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~-~--l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL-G--LKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh-C--CCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45999999999999999999988889999999999999999988765 2 358999999997653 45668999998
Q ss_pred ccccccCCC--------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 255 GAAIHCWSS--------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 255 ~~vl~h~~d--------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+....+... ...+++++.++|||||.+++.+...
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 754332221 1478999999999999999987553
No 81
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.53 E-value=1.3e-13 Score=129.27 Aligned_cols=118 Identities=20% Similarity=0.247 Sum_probs=94.4
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFA 245 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~~ 245 (351)
.+...+....+..+||||||+|.++..+++..|...++|+|+++.+++.+.+++... | ..++.++++|+..+ .++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~-g--L~NV~~i~~DA~~ll~~~~ 189 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL-N--LKNLLIINYDARLLLELLP 189 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEECCHHHhhhhCC
Confidence 344444555567999999999999999999998889999999999999999988776 2 47899999998654 467
Q ss_pred CCceeeEEeccccccCCCh------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 246 SSSIDAVHAGAAIHCWSSP------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++++|.|+++...-|...+ ..++++++|+|+|||.+.+.|-..
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 8999999975332221111 588999999999999999977653
No 82
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.53 E-value=1.4e-12 Score=108.98 Aligned_cols=136 Identities=19% Similarity=0.202 Sum_probs=112.2
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
........|.+.++.+++|||||+|..+..++..+|..+|+++|-++++++..+++.... +.+|+.++.+++.+.-.
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f---g~~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF---GVDNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh---CCCcEEEEeccchHhhc
Confidence 345567888999999999999999999999998899999999999999999999998887 37999999999966421
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
...++|.|+.... .+.+.+|+.+...|+|||++++.....+ +.....+.+
T Consensus 99 ~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE--------------------------~~~~a~~~~ 148 (187)
T COG2242 99 DLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLE--------------------------TLAKALEAL 148 (187)
T ss_pred CCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH--------------------------HHHHHHHHH
Confidence 2237999999887 3567889999999999999999655432 334567788
Q ss_pred HHCCC-eEEE
Q 018740 325 RACGL-VDFK 333 (351)
Q Consensus 325 ~~aGf-~~v~ 333 (351)
++.|+ +++.
T Consensus 149 ~~~g~~ei~~ 158 (187)
T COG2242 149 EQLGGREIVQ 158 (187)
T ss_pred HHcCCceEEE
Confidence 88999 5555
No 83
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.53 E-value=9.8e-13 Score=123.03 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=92.9
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+.+.+.....++|||+|||+|.++..+++.++..+|+++|+|+.+++.++++++.+ .....++..|+... ..
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n----~l~~~~~~~D~~~~--~~ 259 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN----GLEGEVFASNVFSD--IK 259 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCEEEEcccccc--cC
Confidence 4556656555566899999999999999999988789999999999999999988876 33456777777542 25
Q ss_pred CceeeEEeccccccCC-----ChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWS-----SPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~-----d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
++||+|+++-.+|+.. ....+++++.+.|+|||.+++...
T Consensus 260 ~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 260 GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 7899999998887643 246889999999999999998654
No 84
>PTZ00146 fibrillarin; Provisional
Probab=99.52 E-value=1.2e-12 Score=118.00 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=96.4
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC---CCCCCc
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFASSS 248 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l---p~~~~~ 248 (351)
+...++.+|||+|||+|.++..+++. ++...|+++|+++.|.+...+.+.. ..|+.++..|+... +...++
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCC
Confidence 34567889999999999999999987 3456899999999766555444332 26889999998542 223457
Q ss_pred eeeEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHC
Q 018740 249 IDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 327 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~-~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~a 327 (351)
+|+|++... .+|. ..++.++.+.|||||.+++...... .....+ ....|+ +++ ++|+++
T Consensus 203 vDvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~ika~~-id~g~~--------------pe~~f~-~ev-~~L~~~ 262 (293)
T PTZ00146 203 VDVIFADVA---QPDQARIVALNAQYFLKNGGHFIISIKANC-IDSTAK--------------PEVVFA-SEV-QKLKKE 262 (293)
T ss_pred CCEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEEEeccc-cccCCC--------------HHHHHH-HHH-HHHHHc
Confidence 999998764 2444 4566799999999999999432211 100000 011123 344 889999
Q ss_pred CCeEEEEEecC
Q 018740 328 GLVDFKCTRNR 338 (351)
Q Consensus 328 Gf~~v~~~~~g 338 (351)
||+.++.+...
T Consensus 263 GF~~~e~v~L~ 273 (293)
T PTZ00146 263 GLKPKEQLTLE 273 (293)
T ss_pred CCceEEEEecC
Confidence 99988866554
No 85
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.52 E-value=6.9e-13 Score=124.90 Aligned_cols=119 Identities=16% Similarity=0.138 Sum_probs=94.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.++...+++|||+|||+|.++..+++.+|..+|+++|+|+.+++.++++++.+......+++++..|.... ++
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence 45677777665567999999999999999999988889999999999999999998766100124788888887542 23
Q ss_pred CCceeeEEeccccccC---CC--hHHHHHHHHhcccCCcEEEEEe
Q 018740 246 SSSIDAVHAGAAIHCW---SS--PSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~---~d--~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.++||+|+|+-.+|.. .+ ..++++++.++|+|||.++++.
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4689999998666543 22 2478999999999999999975
No 86
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.52 E-value=3.5e-14 Score=121.91 Aligned_cols=150 Identities=17% Similarity=0.249 Sum_probs=110.5
Q ss_pred CeEEEEcCccCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC----CCCCCCceeeE
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSSIDAV 252 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~----lp~~~~~fD~V 252 (351)
.+|||||||.|.....+.+..++ ..+++.|.|+.+++..+++.... ..++...+.|+.. -|...+++|+|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccceE
Confidence 38999999999999999888765 78999999999999999875544 3556666666643 24667899999
Q ss_pred EeccccccCC-C-hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHH--HH-HHHHhhccC-CccCCCHHHHHHHHHH
Q 018740 253 HAGAAIHCWS-S-PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR--LL-RQNMMQISG-SYTFLSEREIEDLCRA 326 (351)
Q Consensus 253 ~~~~vl~h~~-d-~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~-~~~~~s~~~l~~ll~~ 326 (351)
++.++|--++ + ...++.+++++|||||.+++-++...+.. ...+-. .+ ...+-...+ ...+|+.+++.+++..
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dla-qlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ 227 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLA-QLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTK 227 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHH-HHhccCCceeecceEEccCCceeeeccHHHHHHHHHh
Confidence 9999998774 2 34889999999999999999988753221 000000 00 001111222 3468999999999999
Q ss_pred CCCeEEE
Q 018740 327 CGLVDFK 333 (351)
Q Consensus 327 aGf~~v~ 333 (351)
+||..++
T Consensus 228 agf~~~~ 234 (264)
T KOG2361|consen 228 AGFEEVQ 234 (264)
T ss_pred cccchhc
Confidence 9998766
No 87
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.51 E-value=2.1e-13 Score=115.46 Aligned_cols=116 Identities=24% Similarity=0.359 Sum_probs=92.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+.+.+...+..+|||+|||+|..+..+++.++..+|+++|+++.+++.+++++..+ + ..++.++..|+.+.. ++
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n-~--~~~v~~~~~d~~~~~-~~ 96 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN-G--LENVEVVQSDLFEAL-PD 96 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT-T--CTTEEEEESSTTTTC-CT
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-C--ccccccccccccccc-cc
Confidence 4455555444677999999999999999999998777999999999999999999887 2 334999999986633 37
Q ss_pred CceeeEEeccccccCCC-----hHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d-----~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
++||+|+++--++.-.+ ...++++..+.|+|||.+++...
T Consensus 97 ~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 89999999877655443 35889999999999999987554
No 88
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.51 E-value=2.7e-13 Score=119.30 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=90.6
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
...+.+.+...++.+|||||||+|.++..+++... ..+|+++|+++.+++.|++++... | ..++.++.+|+.....
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~-g--~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL-G--LDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC-C--CCCeEEEECCcccCCc
Confidence 45666677777889999999999999999988753 356999999999999999998876 2 4689999999977544
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..++||+|++.....++ .+.+.+.|+|||++++..
T Consensus 143 ~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred ccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 45789999988776655 356788999999998853
No 89
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.51 E-value=2.3e-13 Score=123.88 Aligned_cols=145 Identities=22% Similarity=0.339 Sum_probs=107.3
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
.++.+..+.. ++.+|||+|||+|.++...++.|. .+|+|+|+++.+++.|++++..+ |. ..++.+. ...+.
T Consensus 151 cl~~l~~~~~--~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N-~~-~~~~~v~--~~~~~-- 221 (295)
T PF06325_consen 151 CLELLEKYVK--PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELN-GV-EDRIEVS--LSEDL-- 221 (295)
T ss_dssp HHHHHHHHSS--TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHT-T--TTCEEES--CTSCT--
T ss_pred HHHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHc-CC-CeeEEEE--Eeccc--
Confidence 3555655544 467999999999999999999985 58999999999999999999887 33 2344432 22232
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
..++||+|+++-..+- ...++..+.++|+|||.++++....+ ..+.+.+.+
T Consensus 222 ~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~--------------------------~~~~v~~a~ 272 (295)
T PF06325_consen 222 VEGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILEE--------------------------QEDEVIEAY 272 (295)
T ss_dssp CCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG--------------------------GHHHHHHHH
T ss_pred ccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccHH--------------------------HHHHHHHHH
Confidence 3588999998755332 24667788999999999999766431 346788888
Q ss_pred HHCCCeEEEEEecCeEEEEEEecC
Q 018740 325 RACGLVDFKCTRNRGFVMFTATKP 348 (351)
Q Consensus 325 ~~aGf~~v~~~~~g~~~~~~a~kp 348 (351)
++ ||..++....+.|..+.++|+
T Consensus 273 ~~-g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 273 KQ-GFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp HT-TEEEEEEEEETTEEEEEEEE-
T ss_pred HC-CCEEEEEEEECCEEEEEEEeC
Confidence 77 999999888888888888774
No 90
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.49 E-value=9.3e-13 Score=114.20 Aligned_cols=115 Identities=16% Similarity=0.130 Sum_probs=90.2
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~ 244 (351)
...+...+...++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.++++++.. + ..+++++.+|+.+ ++.
T Consensus 29 ~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~-~--~~~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 29 RLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF-G--VKNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-C--CCCeEEEECchHHHHhh
Confidence 34567777777788999999999999999987766679999999999999999988765 2 3579999999854 222
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
....+|.++... ..+...+++++.++|+|||.+++..+.
T Consensus 106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 223467765432 235578999999999999999998764
No 91
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.49 E-value=8.2e-13 Score=123.63 Aligned_cols=119 Identities=24% Similarity=0.308 Sum_probs=94.4
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.+...+.......++.+|||+|||+|.++..++..+. .++|+|+++.|++.++.++... | ..++.+..+|+.++|
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~-g--~~~i~~~~~D~~~l~ 243 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHY-G--IEDFFVKRGDATKLP 243 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHh-C--CCCCeEEecchhcCC
Confidence 3444555555666788999999999999988877665 9999999999999999998876 2 345889999999999
Q ss_pred CCCCceeeEEecccc------c-c-CCC-hHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 FASSSIDAVHAGAAI------H-C-WSS-PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl------~-h-~~d-~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+.+++||+|+++--. . + ..+ ...+++++.++|+|||++++..+.
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 888899999996321 1 1 111 368899999999999999987654
No 92
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.48 E-value=6.1e-13 Score=116.26 Aligned_cols=99 Identities=21% Similarity=0.227 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--------CCC
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS 246 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--------~~~ 246 (351)
.++.+|||+|||+|.++..+++.. +...|+|+|+++ |. ..+++.++++|+.+.+ +.+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-------------~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-------------PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-------------CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 457899999999999999998874 446899999988 20 1357899999998853 567
Q ss_pred CceeeEEeccccccCCCh-----------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 247 SSIDAVHAGAAIHCWSSP-----------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~-----------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++||+|++..+.++..++ ..+|+++.++|+|||.+++..+..
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 899999998777665443 357999999999999999976653
No 93
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.48 E-value=2.5e-12 Score=121.39 Aligned_cols=153 Identities=13% Similarity=0.030 Sum_probs=109.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
...+.+...+. ++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++... ..++.++++|+.+..
T Consensus 240 ~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~----g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 240 HLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL----GARVEFAHGSWFDTD 313 (423)
T ss_pred HHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCcEEEEEcchhccc
Confidence 33444444443 356999999999999999998777779999999999999999998776 458999999986543
Q ss_pred C-CCCceeeEEeccccc-----cC----------------CC----hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchH
Q 018740 244 F-ASSSIDAVHAGAAIH-----CW----------------SS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 297 (351)
Q Consensus 244 ~-~~~~fD~V~~~~vl~-----h~----------------~d----~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~ 297 (351)
+ ..++||+|+++--.- +. .| ...+++++.+.|+|||.+++....
T Consensus 314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---------- 383 (423)
T PRK14966 314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---------- 383 (423)
T ss_pred cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc----------
Confidence 2 245799999964210 00 01 125566777899999998874321
Q ss_pred HHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE--ecCeEEEEEEecCC
Q 018740 298 SRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATKPS 349 (351)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~--~~g~~~~~~a~kp~ 349 (351)
-..+.+.+++++.||..++.. ..|.-.++.++++.
T Consensus 384 -----------------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~~~ 420 (423)
T PRK14966 384 -----------------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMK 420 (423)
T ss_pred -----------------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEEhh
Confidence 134678899999999876643 34555666666543
No 94
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.48 E-value=1.1e-12 Score=120.44 Aligned_cols=127 Identities=17% Similarity=0.246 Sum_probs=94.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++..+ +. ..++.+...+... ..+++||+|+++.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n-~~-~~~~~~~~~~~~~--~~~~~fDlVvan~ 233 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELN-QV-SDRLQVKLIYLEQ--PIEGKADVIVANI 233 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc-CC-CcceEEEeccccc--ccCCCceEEEEec
Confidence 46899999999999998888776 358999999999999999988765 22 2345666665332 3367899999976
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEEe
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~ 336 (351)
..++ ...++.++.++|+|||.++++....+ ..+++.+.+++. |..++...
T Consensus 234 ~~~~---l~~ll~~~~~~LkpgG~li~sgi~~~--------------------------~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 234 LAEV---IKELYPQFSRLVKPGGWLILSGILET--------------------------QAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred CHHH---HHHHHHHHHHHcCCCcEEEEEeCcHh--------------------------HHHHHHHHHHcc-CceeeEec
Confidence 5443 35789999999999999998754321 235677777766 87776554
Q ss_pred cC
Q 018740 337 NR 338 (351)
Q Consensus 337 ~g 338 (351)
.+
T Consensus 284 ~~ 285 (288)
T TIGR00406 284 RE 285 (288)
T ss_pred cC
Confidence 44
No 95
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.47 E-value=2.5e-12 Score=117.86 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=101.8
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec---
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG--- 255 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~--- 255 (351)
.+|||+|||+|.++..++...+..+|+|+|+|+.+++.|++++... +. ..++.++.+|+.+ +++.++||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~-~~-~~~v~~~~~d~~~-~~~~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN-QL-EHRVEFIQSNLFE-PLAGQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEECchhc-cCcCCCccEEEECCCC
Confidence 6899999999999999999887779999999999999999998765 22 2359999999865 3344589999986
Q ss_pred ----------cccccCC------------ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCcc
Q 018740 256 ----------AAIHCWS------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT 313 (351)
Q Consensus 256 ----------~vl~h~~------------d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (351)
.++.|-| ....+++++.+.|+|||++++....
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~-------------------------- 246 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN-------------------------- 246 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc--------------------------
Confidence 2333322 2346788999999999999885432
Q ss_pred CCCHHHHHHHHH-HCCCeEEEEE--ecCeEEEEEEec
Q 018740 314 FLSEREIEDLCR-ACGLVDFKCT--RNRGFVMFTATK 347 (351)
Q Consensus 314 ~~s~~~l~~ll~-~aGf~~v~~~--~~g~~~~~~a~k 347 (351)
...+.+.+++. ..||..++.. ..|.-.++.+++
T Consensus 247 -~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 247 -WQQKSLKELLRIKFTWYDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred -cHHHHHHHHHHhcCCCceeEEecCCCCCceEEEEEe
Confidence 12346667777 4688766543 234445555544
No 96
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.47 E-value=4e-12 Score=116.32 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=100.5
Q ss_pred ccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceee
Q 018740 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 251 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~ 251 (351)
.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++... +. ..++.++.+|+.+. +++++||+
T Consensus 116 ~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~-~~-~~~i~~~~~D~~~~-~~~~~fD~ 192 (284)
T TIGR03533 116 WLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH-GL-EDRVTLIQSDLFAA-LPGRKYDL 192 (284)
T ss_pred HhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEECchhhc-cCCCCccE
Confidence 33333456999999999999999999887789999999999999999998776 22 25799999998542 34568999
Q ss_pred EEecc------ccccC-----CCh--------------HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh
Q 018740 252 VHAGA------AIHCW-----SSP--------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM 306 (351)
Q Consensus 252 V~~~~------vl~h~-----~d~--------------~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~ 306 (351)
|+++- .+.++ .+| ..+++++.+.|+|||++++....
T Consensus 193 Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~------------------- 253 (284)
T TIGR03533 193 IVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN------------------- 253 (284)
T ss_pred EEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-------------------
Confidence 99861 11111 112 46688899999999999985431
Q ss_pred hccCCccCCCHHHHHHHHHHCCCeEEEEEecCe
Q 018740 307 QISGSYTFLSEREIEDLCRACGLVDFKCTRNRG 339 (351)
Q Consensus 307 ~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~g~ 339 (351)
+.+.+.+++...||.-......+.
T Consensus 254 ---------~~~~v~~~~~~~~~~~~~~~~~~~ 277 (284)
T TIGR03533 254 ---------SMEALEEAYPDVPFTWLEFENGGD 277 (284)
T ss_pred ---------CHHHHHHHHHhCCCceeeecCCCc
Confidence 334677788888887655444443
No 97
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.47 E-value=1.4e-12 Score=116.80 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=107.1
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+.......+..+|||||+|+|.++..+++++|..+++.+|. |..++.+++ .++++++.+|+. -+++.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~ 158 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV 158 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc
Confidence 3445555666677999999999999999999999999999998 889988887 379999999997 45555
Q ss_pred CceeeEEeccccccCCChH--HHHHHHHhcccCC--cEEEEEeeccCCCCCcchHH---HHHHHHHhhccCCccCCCHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPG--GVFVGTTYIVDGPFNLIPFS---RLLRQNMMQISGSYTFLSERE 319 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~--~~l~~i~~~Lkpg--G~li~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~ 319 (351)
+|+|++.++||+++|.. .+|+++++.|+|| |+|++.++..+......... ....-.+.... ....+|.++
T Consensus 159 --~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e 235 (241)
T PF00891_consen 159 --ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEE 235 (241)
T ss_dssp --ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHH
T ss_pred --ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHH
Confidence 99999999999998775 8899999999999 99999998875443222221 01111111111 245668999
Q ss_pred HHHHHH
Q 018740 320 IEDLCR 325 (351)
Q Consensus 320 l~~ll~ 325 (351)
++++|+
T Consensus 236 ~~~ll~ 241 (241)
T PF00891_consen 236 WEALLK 241 (241)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 998874
No 98
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=5.2e-12 Score=115.34 Aligned_cols=153 Identities=17% Similarity=0.147 Sum_probs=108.5
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+...+.+...+...++.+|||+|||+|.++..++...+..+++|+|+|+.+++.+++++... ...++.++.+|+...
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~---~~~~i~~~~~d~~~~ 170 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG---LGARVEFLQGDWFEP 170 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC---CCCcEEEEEccccCc
Confidence 33444555444555677999999999999999999887779999999999999999987721 146899999998553
Q ss_pred CCCCCceeeEEecccc------c--------cC------------CChHHHHHHHHhcccCCcEEEEEeeccCCCCCcch
Q 018740 243 PFASSSIDAVHAGAAI------H--------CW------------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl------~--------h~------------~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~ 296 (351)
+.+++||+|+++--. + |- .....+++++.++|+|||.+++...
T Consensus 171 -~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g---------- 239 (275)
T PRK09328 171 -LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG---------- 239 (275)
T ss_pred -CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC----------
Confidence 235789999985221 1 11 1124678888899999999998431
Q ss_pred HHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEEe--cCeEEEEEEe
Q 018740 297 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR--NRGFVMFTAT 346 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~--~g~~~~~~a~ 346 (351)
+...+.+.+++++.||..++... .|.-.++.++
T Consensus 240 -----------------~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 240 -----------------YDQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -----------------chHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 01234688899999998766432 2333444443
No 99
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.46 E-value=2.7e-13 Score=114.80 Aligned_cols=111 Identities=28% Similarity=0.345 Sum_probs=87.8
Q ss_pred HHHHhccCCC--CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC-CCCC
Q 018740 167 ELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLP 243 (351)
Q Consensus 167 ~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~-~~lp 243 (351)
++..+.+... ...-|||||||+|..+..+.+.|. ..+|+|+|+.|++.|.++- -.-.++.+|+ +.+|
T Consensus 38 eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e--------~egdlil~DMG~Glp 107 (270)
T KOG1541|consen 38 ERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVERE--------LEGDLILCDMGEGLP 107 (270)
T ss_pred HHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhh--------hhcCeeeeecCCCCC
Confidence 3444444333 467899999999999999999987 8999999999999999731 1134777887 5589
Q ss_pred CCCCceeeEEeccccccCC-------ChH----HHHHHHHhcccCCcEEEEEeec
Q 018740 244 FASSSIDAVHAGAAIHCWS-------SPS----TGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~-------d~~----~~l~~i~~~LkpgG~li~~~~~ 287 (351)
|+.++||.+++..+++++- +|. .++..++.+|++|+..++..+-
T Consensus 108 frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 9999999999988887663 232 6788899999999999987653
No 100
>PHA03411 putative methyltransferase; Provisional
Probab=99.46 E-value=2.3e-12 Score=115.03 Aligned_cols=144 Identities=14% Similarity=0.159 Sum_probs=106.0
Q ss_pred CCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE
Q 018740 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236 (351)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~ 236 (351)
+.|..|...+..+. +.....++|||+|||+|.++..++++.+..+|+|+|+++.|++.++++ .+++.+++
T Consensus 46 G~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n--------~~~v~~v~ 115 (279)
T PHA03411 46 GAFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL--------LPEAEWIT 115 (279)
T ss_pred eeEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CcCCEEEE
Confidence 44566666653332 223345799999999999998888775446999999999999999885 35788999
Q ss_pred ecCCCCCCCCCceeeEEeccccccCCC--------------------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcch
Q 018740 237 ADISRLPFASSSIDAVHAGAAIHCWSS--------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296 (351)
Q Consensus 237 ~d~~~lp~~~~~fD~V~~~~vl~h~~d--------------------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~ 296 (351)
+|+..+.. +.+||+|+++-.+.|... ...+++.+..+|+|+|.+++..... +
T Consensus 116 ~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~-------~ 187 (279)
T PHA03411 116 SDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR-------P 187 (279)
T ss_pred Cchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc-------c
Confidence 99988653 468999999888877532 1356677788999999776652211 1
Q ss_pred HHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeE
Q 018740 297 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD 331 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~ 331 (351)
+ + | .-.+.++++++|+++||..
T Consensus 188 ~-------y-----~-~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 188 Y-------Y-----D-GTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred c-------c-----c-ccCCHHHHHHHHHhcCcEe
Confidence 1 0 1 2358899999999999974
No 101
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.46 E-value=3.3e-12 Score=111.87 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=92.0
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-------C--CCCCCCeEEEEecCCCCC
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------S--NFPKENFLLVRADISRLP 243 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~--g~~~~~i~~~~~d~~~lp 243 (351)
+...++.+||+.|||.|.....|++.|. +|+|+|+|+.+++.+.+..... . -....+++++++|+.+++
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3344568999999999999999999998 8999999999999986632100 0 011458999999999986
Q ss_pred CC---CCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 FA---SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 ~~---~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.. .+.||+|+-...+.+++.. .+..+.+.++|+|||.+++.+...+
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 42 2689999999999999643 4889999999999999999887543
No 102
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.46 E-value=4.5e-13 Score=106.03 Aligned_cols=107 Identities=22% Similarity=0.363 Sum_probs=87.4
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCceeeEEec
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG 255 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~ 255 (351)
|.+|||+|||+|.++..+++.+ ..+++|+|+++..++.++.++... +. ..+++++++|+.+.. +++++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~-~~-~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN-GL-DDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC-TT-TTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc-cC-CceEEEEECchhhchhhccCceeEEEEEC
Confidence 4589999999999999999998 569999999999999999988875 21 467999999998765 678999999998
Q ss_pred cccccCC--------ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 256 AAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 256 ~vl~h~~--------d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
--..... .-..+++++.++|+|||.+++.+++
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 6654321 1247899999999999999998763
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.45 E-value=2.5e-12 Score=112.88 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=89.9
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
....+...+...++.+|||+|||+|.++..+++... +++++|+++.+++.+++++... + ..++++..+|......
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~~ 140 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQL-G--LHNVSVRHGDGWKGWP 140 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHC-C--CCceEEEECCcccCCC
Confidence 345666677777889999999999999988887764 8999999999999999998775 2 4579999999865322
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..++||+|++...++++ .+++.+.|+|||.+++...
T Consensus 141 ~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 AYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 35789999998877665 3567889999999998655
No 104
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.43 E-value=7.8e-12 Score=106.73 Aligned_cols=170 Identities=18% Similarity=0.197 Sum_probs=124.1
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe-EEEEecCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF-LLVRADISRL 242 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i-~~~~~d~~~l 242 (351)
.+.+.+.+++... +.+|||||||||.....+++..|.....-.|+++......+..+.+. + .+|+ .-+..|+...
T Consensus 13 pIl~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~-~--~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 13 PILEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA-G--LPNVRPPLALDVSAP 88 (204)
T ss_pred HHHHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc-C--CcccCCCeEeecCCC
Confidence 3456777777653 22699999999999999999999888888999998877766665554 2 2222 1234555544
Q ss_pred CC--------CCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCc
Q 018740 243 PF--------ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSY 312 (351)
Q Consensus 243 p~--------~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (351)
+. ..++||+|++.+++|-.+-. ..+++.+.++|++||.|++..|...+-....+--..+...+......+
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~ 168 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEW 168 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCc
Confidence 22 24589999999999987643 588999999999999999988865433333333444555555555577
Q ss_pred cCCCHHHHHHHHHHCCCeEEEEEec
Q 018740 313 TFLSEREIEDLCRACGLVDFKCTRN 337 (351)
Q Consensus 313 ~~~s~~~l~~ll~~aGf~~v~~~~~ 337 (351)
-..+.+++.++.+++|+..++.+..
T Consensus 169 GiRD~e~v~~lA~~~GL~l~~~~~M 193 (204)
T PF06080_consen 169 GIRDIEDVEALAAAHGLELEEDIDM 193 (204)
T ss_pred CccCHHHHHHHHHHCCCccCccccc
Confidence 8889999999999999998775543
No 105
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=1e-11 Score=114.79 Aligned_cols=132 Identities=17% Similarity=0.116 Sum_probs=97.6
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc-
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA- 256 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~- 256 (351)
..+|||+|||+|.++..++...+..+|+|+|+|+.+++.|++++... +. ..++.++.+|+.+. +++++||+|+++-
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~-~l-~~~i~~~~~D~~~~-l~~~~fDlIvsNPP 210 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH-GL-EDRVTLIESDLFAA-LPGRRYDLIVSNPP 210 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-CC-CCcEEEEECchhhh-CCCCCccEEEECCC
Confidence 36899999999999999999887789999999999999999998876 22 24699999998542 2356899999861
Q ss_pred -----c-------cccCCC------------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCc
Q 018740 257 -----A-------IHCWSS------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSY 312 (351)
Q Consensus 257 -----v-------l~h~~d------------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (351)
. ++|-+. ...+++++.+.|+|||.+++....
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~------------------------- 265 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN------------------------- 265 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc-------------------------
Confidence 1 122221 146789999999999999985321
Q ss_pred cCCCHHHHHHHHHHCCCeEEEEEecCeE
Q 018740 313 TFLSEREIEDLCRACGLVDFKCTRNRGF 340 (351)
Q Consensus 313 ~~~s~~~l~~ll~~aGf~~v~~~~~g~~ 340 (351)
+...+.+++...||.-......+..
T Consensus 266 ---~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (307)
T PRK11805 266 ---SRVHLEEAYPDVPFTWLEFENGGDG 290 (307)
T ss_pred ---CHHHHHHHHhhCCCEEEEecCCCce
Confidence 2235667777778766555444443
No 106
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.42 E-value=3.5e-12 Score=108.21 Aligned_cols=156 Identities=22% Similarity=0.300 Sum_probs=100.4
Q ss_pred hhhhhhhhhhhhcCCCCCcHHHHHHHHhccCCCC-CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh
Q 018740 144 FIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (351)
Q Consensus 144 ~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 222 (351)
..|+.++|++.... |..-.+.+.+++...+ ...|.|+|||.+.++..+.+. . .|+..|+-.
T Consensus 42 ~~YH~Gfr~Qv~~W----P~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~--~V~SfDLva----------- 103 (219)
T PF05148_consen 42 DIYHEGFRQQVKKW----PVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-H--KVHSFDLVA----------- 103 (219)
T ss_dssp HHHHHHHHHHHCTS----SS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS------------
T ss_pred HHHHHHHHHHHhcC----CCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-c--eEEEeeccC-----------
Confidence 45667777765332 2223455666665444 468999999999999776533 2 799999854
Q ss_pred hhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHH
Q 018740 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR 302 (351)
Q Consensus 223 ~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 302 (351)
.+-.+..+|+.++|+++++.|+++++-.|.- .|...+++|+.|+|||||.|.|.+...
T Consensus 104 -------~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S-------------- 161 (219)
T PF05148_consen 104 -------PNPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS-------------- 161 (219)
T ss_dssp -------SSTTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG--------------
T ss_pred -------CCCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc--------------
Confidence 2223678999999999999999999988875 478899999999999999999977642
Q ss_pred HHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE-ecCeEEEEEEecCC
Q 018740 303 QNMMQISGSYTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATKPS 349 (351)
Q Consensus 303 ~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~-~~g~~~~~~a~kp~ 349 (351)
++-+.+.+.+.++..||...... .+..++++..+|..
T Consensus 162 ----------Rf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 162 ----------RFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp ----------G-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred ----------cCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 23367889999999999988843 55667777777654
No 107
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.40 E-value=7.4e-12 Score=109.74 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=105.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC---------CCCCCCeEEEEe
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENFLLVRA 237 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------g~~~~~i~~~~~ 237 (351)
......+...++.+||..|||.|.....|++.|. +|+|+|+|+.+++.+.+...... .....+|+++++
T Consensus 27 ~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 27 VEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 3333335566678999999999999999999987 99999999999999854322100 011347899999
Q ss_pred cCCCCCCCC-CceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccC
Q 018740 238 DISRLPFAS-SSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF 314 (351)
Q Consensus 238 d~~~lp~~~-~~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (351)
|+..++... ++||+|+-...|.-++ ...+..+.+.++|+|||.+++.+...+... ..+.-..
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~---------------~~GPPf~ 169 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE---------------MEGPPFS 169 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC---------------SSSSS--
T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC---------------CCCcCCC
Confidence 999987544 5899999988887775 335889999999999999666665432111 0112223
Q ss_pred CCHHHHHHHHHHCCCeEEEE
Q 018740 315 LSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 315 ~s~~~l~~ll~~aGf~~v~~ 334 (351)
.+.+++.+++. .+|++...
T Consensus 170 v~~~ev~~l~~-~~f~i~~l 188 (218)
T PF05724_consen 170 VTEEEVRELFG-PGFEIEEL 188 (218)
T ss_dssp --HHHHHHHHT-TTEEEEEE
T ss_pred CCHHHHHHHhc-CCcEEEEE
Confidence 58899999998 78877653
No 108
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.40 E-value=2.5e-12 Score=110.63 Aligned_cols=119 Identities=23% Similarity=0.178 Sum_probs=83.5
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
...+..+...-.. ...++|+|||+|..++.++..+. +|+|+|+|+.|++.|++...... ......+...++.+|
T Consensus 21 tdw~~~ia~~~~~--h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y--~~t~~~ms~~~~v~L 94 (261)
T KOG3010|consen 21 TDWFKKIASRTEG--HRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTY--CHTPSTMSSDEMVDL 94 (261)
T ss_pred HHHHHHHHhhCCC--cceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCccc--ccCCccccccccccc
Confidence 3334444444332 23899999999988888888876 99999999999999988532220 011122222233333
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCc-EEEEEeecc
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG-VFVGTTYIV 288 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG-~li~~~~~~ 288 (351)
--.+++.|+|++...+|++ |...+.++++|+||++| .+.+..++.
T Consensus 95 ~g~e~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 95 LGGEESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred cCCCcceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 3348999999999999987 78889999999999876 666665553
No 109
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.39 E-value=8.6e-12 Score=115.23 Aligned_cols=110 Identities=19% Similarity=0.296 Sum_probs=84.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCCCCC----cee
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASS----SID 250 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~----~fD 250 (351)
++.+|||+|||+|..+..+++..+ ..+|+|+|+|+.|++.+++++... ....++.++++|+.+ ++++.. ...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD--YPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh--CCCceEEEEEEcccchhhhhcccccCCeE
Confidence 467899999999999999998864 358999999999999999987764 113457778999976 343332 234
Q ss_pred eEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 251 AVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 251 ~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++++...+++++. ...+|++++++|+|||.+++.....
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 5555567888863 3478999999999999999865443
No 110
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.37 E-value=5.6e-11 Score=105.55 Aligned_cols=164 Identities=15% Similarity=0.155 Sum_probs=127.1
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe-EEEEecCCCC---CCCCCc
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENF-LLVRADISRL---PFASSS 248 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i-~~~~~d~~~l---p~~~~~ 248 (351)
...+-+||||.||.|+.........+. .++...|.|+..++..++.+++. | ..++ .|.++|+.+. .--+..
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~-g--L~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER-G--LEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc-C--CccceEEEecCCCCHhHhhccCCC
Confidence 345679999999999998888887664 68999999999999999998887 3 3444 9999998763 222446
Q ss_pred eeeEEeccccccCCChH---HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhcc----CCccCCCHHHHH
Q 018740 249 IDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS----GSYTFLSEREIE 321 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~---~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~l~ 321 (351)
.++++.++.++.++|-. ..|+.+.+.+.|||+++.+.. ++.|.++.+...+..+. ...+..|..++.
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ------PwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ------PWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMD 283 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC------CCCcchHHHHHHHhcccCCCceEEEecCHHHHH
Confidence 79999999999999854 679999999999999998653 33444554544444422 123567999999
Q ss_pred HHHHHCCCeEEE--EEecCeEEEEEEec
Q 018740 322 DLCRACGLVDFK--CTRNRGFVMFTATK 347 (351)
Q Consensus 322 ~ll~~aGf~~v~--~~~~g~~~~~~a~k 347 (351)
++.+.+||+.++ +...|.|.+-.|+|
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeecC
Confidence 999999998777 45678888877765
No 111
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=6.1e-11 Score=106.57 Aligned_cols=118 Identities=20% Similarity=0.322 Sum_probs=95.7
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.-.+.+++.+....+.+|||+|||.|.++..+++..|..+++-+|+|..+++.+++++..+ + ..+..++..|...-
T Consensus 145 ~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N-~--~~~~~v~~s~~~~~- 220 (300)
T COG2813 145 KGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN-G--VENTEVWASNLYEP- 220 (300)
T ss_pred hHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc-C--CCccEEEEeccccc-
Confidence 3356788888877777999999999999999999999999999999999999999999887 1 34435666666443
Q ss_pred CCCCceeeEEeccccccCCCh-----HHHHHHHHhcccCCcEEEEEee
Q 018740 244 FASSSIDAVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~-----~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..+ +||+|+|+=-+|-=.+. .+++++..+.|++||.|.++..
T Consensus 221 v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 221 VEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 233 89999999887743322 3789999999999999998765
No 112
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.4e-11 Score=105.33 Aligned_cols=111 Identities=21% Similarity=0.178 Sum_probs=94.2
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
....+.+.+.+.++.+|||||||+|+.+..+++... +|+.+|..+...+.|++++... +..|+.+.++|...--.
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~l---g~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETL---GYENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHc---CCCceEEEECCcccCCC
Confidence 356778888999999999999999999999999876 9999999999999999999887 35679999999866433
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+.++||.|+.......+|++ +.+.|+|||++++-.-
T Consensus 135 ~~aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 EEAPYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence 46889999999988877544 5678999999998544
No 113
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.36 E-value=2.7e-11 Score=117.28 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=92.8
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (351)
...+...+.+.++.+|||+|||+|..+..+++.++..+|+++|+++.+++.+++++... ..++.++++|+.+++
T Consensus 233 s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~----g~~~~~~~~D~~~~~~~ 308 (427)
T PRK10901 233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL----GLKATVIVGDARDPAQW 308 (427)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEcCcccchhh
Confidence 34455667777889999999999999999998875569999999999999999998876 345789999998764
Q ss_pred CCCCceeeEEecc------ccccCC------Ch----------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 244 FASSSIDAVHAGA------AIHCWS------SP----------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 244 ~~~~~fD~V~~~~------vl~h~~------d~----------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+..++||.|++.- ++.+-+ .+ ..+|+++.++|||||.+++++...
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2357899999432 222111 11 368999999999999999988643
No 114
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.35 E-value=2e-11 Score=107.44 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=107.9
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FA 245 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~ 245 (351)
.+..+......++|||+|||+|..+..++++.+..+++|||+.+.+.+.|+++++.+ ....+++++++|+.++. ..
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--PLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--cchhceeEehhhHHHhhhccc
Confidence 455666666688999999999999999999976789999999999999999998875 22689999999998764 33
Q ss_pred CCceeeEEeccccc----------------cC--CChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh
Q 018740 246 SSSIDAVHAGAAIH----------------CW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ 307 (351)
Q Consensus 246 ~~~fD~V~~~~vl~----------------h~--~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (351)
..+||+|+|+=-.. |. .+.+..++...++|||||.+.+.-+..
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e------------------- 173 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE------------------- 173 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-------------------
Confidence 45799999983321 11 134688899999999999998864321
Q ss_pred ccCCccCCCHHHHHHHHHHCCCeEEE
Q 018740 308 ISGSYTFLSEREIEDLCRACGLVDFK 333 (351)
Q Consensus 308 ~~~~~~~~s~~~l~~ll~~aGf~~v~ 333 (351)
...++.+++++.+|...+
T Consensus 174 --------rl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 174 --------RLAEIIELLKSYNLEPKR 191 (248)
T ss_pred --------HHHHHHHHHHhcCCCceE
Confidence 235788899998997766
No 115
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.35 E-value=5.6e-12 Score=109.62 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=87.0
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
....+.+.+...++.+|||||||+|+++..++.. ++...|+++|+.+..++.|++++... ...++.++.+|....-
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~---~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL---GIDNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH---TTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh---ccCceeEEEcchhhcc
Confidence 3456778888889999999999999999999887 54557999999999999999999887 2468999999986543
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...++||.|++......++ ..+.+.|++||++++-.-
T Consensus 137 ~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred ccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 3457899999998877543 236678999999998443
No 116
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=3e-11 Score=105.45 Aligned_cols=115 Identities=23% Similarity=0.288 Sum_probs=99.4
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
...+...++..++.+|||.|.|+|.++..|+.. ++.++|+.+|+.++..+.|++++... |. .+++.+..+|+.+.-.
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-~l-~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-GL-GDRVTLKLGDVREGID 160 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-cc-ccceEEEecccccccc
Confidence 457788889999999999999999999999964 67789999999999999999999986 33 3459999999987655
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++ .||+|+. .+++|..+++.+.++|+|||.+++..|+.
T Consensus 161 ~~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 161 EE-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cc-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 44 8999984 57899999999999999999999977653
No 117
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.34 E-value=3.5e-11 Score=104.38 Aligned_cols=172 Identities=18% Similarity=0.222 Sum_probs=120.5
Q ss_pred ccccCccchhhhcCC-hhhhhhhhhhhhhhhcCCCCCcHHHHHHHHhccCCC-CCCeEEEEcCccCHHHHHHHHhCCCCe
Q 018740 126 YGELMSPATEFFRMP-FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSL 203 (351)
Q Consensus 126 y~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~ 203 (351)
|......+..+|..+ ..-..|+.+++.+....-... ++.+...+... ....|.|+|||.+.++. .... .
T Consensus 131 Yt~~s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nP----ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~--k 201 (325)
T KOG3045|consen 131 YTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENP----LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERH--K 201 (325)
T ss_pred ccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCCh----HHHHHHHHHhCcCceEEEecccchhhhhh---cccc--c
Confidence 333333334455443 333457778887764433322 33444444333 34589999999998775 2223 8
Q ss_pred EEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEE
Q 018740 204 VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 204 v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~ 283 (351)
|+.+|+-+ .+-.++.+|+.++|+++++.|+++++..|.- .|...++.|+.|+|++||.++|
T Consensus 202 V~SfDL~a------------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 202 VHSFDLVA------------------VNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYI 262 (325)
T ss_pred eeeeeeec------------------CCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEE
Confidence 99999843 4556789999999999999999998888764 5888999999999999999999
Q ss_pred EeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEE-EecCeEEEEEEecCC
Q 018740 284 TTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC-TRNRGFVMFTATKPS 349 (351)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~-~~~g~~~~~~a~kp~ 349 (351)
.... .++-+...+...+...||.+... ..+..+++|...|+.
T Consensus 263 AEv~------------------------SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 263 AEVK------------------------SRFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred Eehh------------------------hhcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence 6543 13456778999999999998774 345566777766643
No 118
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.33 E-value=7.3e-11 Score=106.07 Aligned_cols=137 Identities=16% Similarity=0.116 Sum_probs=96.8
Q ss_pred HHHHHhccCC-CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C
Q 018740 166 FELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P 243 (351)
Q Consensus 166 ~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p 243 (351)
.+.+...+.. ....+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++... +++++++|+.+. +
T Consensus 74 v~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D~~~~l~ 147 (251)
T TIGR03704 74 VDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------GGTVHEGDLYDALP 147 (251)
T ss_pred HHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEeechhhcc
Confidence 3444444432 2245899999999999999998766669999999999999999998765 247889998653 2
Q ss_pred C-CCCceeeEEecccc------c--------cCC--------C----hHHHHHHHHhcccCCcEEEEEeeccCCCCCcch
Q 018740 244 F-ASSSIDAVHAGAAI------H--------CWS--------S----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296 (351)
Q Consensus 244 ~-~~~~fD~V~~~~vl------~--------h~~--------d----~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~ 296 (351)
. ..++||+|+++--. . |-+ | ...+++.+.++|+|||++++.....
T Consensus 148 ~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~-------- 219 (251)
T TIGR03704 148 TALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER-------- 219 (251)
T ss_pred hhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc--------
Confidence 1 13579999987321 1 110 1 2367778889999999999864321
Q ss_pred HHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 297 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
...++..++++.||......
T Consensus 220 -------------------~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 220 -------------------QAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred -------------------hHHHHHHHHHHCCCCceeeE
Confidence 23468888899999655433
No 119
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.33 E-value=1.7e-11 Score=93.42 Aligned_cols=101 Identities=27% Similarity=0.406 Sum_probs=84.8
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC-CCCceeeEEecccc
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAGAAI 258 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~~vl 258 (351)
+|+|+|||.|.++..+.+ ....+++++|+++.+++.+++..... ...++.++..|+.+... ..++||+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccce
Confidence 589999999999999988 33569999999999999998533222 25678999999987653 46789999999999
Q ss_pred cc-CCChHHHHHHHHhcccCCcEEEEE
Q 018740 259 HC-WSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 259 ~h-~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
++ ..+...+++.+.+.|+|||.+++.
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99 778889999999999999999875
No 120
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.33 E-value=1.7e-11 Score=113.42 Aligned_cols=111 Identities=16% Similarity=0.186 Sum_probs=88.0
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
...+.+.+...++.+|||||||+|.++..+++... ...|+++|+++.+++.|++++... | ..++.++.+|+...+.
T Consensus 69 ~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~-g--~~nV~~i~gD~~~~~~ 145 (322)
T PRK13943 69 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL-G--IENVIFVCGDGYYGVP 145 (322)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEeCChhhccc
Confidence 34555666666788999999999999999988753 247999999999999999988765 2 4679999999877655
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..++||+|++...+++++ ..+.+.|+|||.+++..
T Consensus 146 ~~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 146 EFAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccCCccEEEECCchHHhH------HHHHHhcCCCCEEEEEe
Confidence 557899999987766542 34678999999988743
No 121
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.32 E-value=1.9e-11 Score=118.35 Aligned_cols=124 Identities=22% Similarity=0.197 Sum_probs=96.2
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.....+...+.+.++.+|||+|||+|..+..+++..+.++|+++|+++.+++.++++++.. |.. ..+.+..+|....+
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~-g~~-~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL-GLT-IKAETKDGDGRGPS 302 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc-CCC-eEEEEecccccccc
Confidence 3345566677888889999999999999999988755679999999999999999999876 321 23444667766554
Q ss_pred C--CCCceeeEEe------ccccccCCC----------------hHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 F--ASSSIDAVHA------GAAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 ~--~~~~fD~V~~------~~vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
. ..++||.|++ .+++++.++ ...+|.++.++|||||.++.++....
T Consensus 303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 3 4678999995 246666555 35789999999999999999887653
No 122
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.32 E-value=5.5e-11 Score=117.05 Aligned_cols=127 Identities=13% Similarity=0.100 Sum_probs=95.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc-
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA- 256 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~- 256 (351)
+.+|||+|||+|.++..++...+..+|+|+|+|+.+++.|++++... +. ..++.++.+|+... ++.++||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~-~l-~~~v~~~~~D~~~~-~~~~~fDlIvsNPP 215 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY-EV-TDRIQIIHSNWFEN-IEKQKFDFIVSNPP 215 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-CC-ccceeeeecchhhh-CcCCCccEEEECCC
Confidence 46899999999999999988877779999999999999999998765 22 35789999997542 3356899999852
Q ss_pred -------------ccccCC--------C----hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCC
Q 018740 257 -------------AIHCWS--------S----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS 311 (351)
Q Consensus 257 -------------vl~h~~--------d----~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (351)
+..|-+ | ...+++++.++|+|||.+++...
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig------------------------- 270 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG------------------------- 270 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC-------------------------
Confidence 112211 1 12467788899999999987421
Q ss_pred ccCCCHHHHHHHHHHCCCeEEEE
Q 018740 312 YTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 312 ~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
+-..+.+.+++++.||..++.
T Consensus 271 --~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 271 --FKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred --CchHHHHHHHHHhcCCCceEE
Confidence 113457888888899976653
No 123
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=2.7e-11 Score=117.56 Aligned_cols=123 Identities=22% Similarity=0.250 Sum_probs=97.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
+.....+...+.+.++.+|||+|||+|..+..+++.. ..++|+++|+++.+++.+++++... | ..++.++.+|+..
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~-g--~~~v~~~~~D~~~ 314 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL-G--LKSIKILAADSRN 314 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc-C--CCeEEEEeCChhh
Confidence 3334455666777788999999999999999988863 3458999999999999999998876 3 3579999999987
Q ss_pred CC----CCCCceeeEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 242 LP----FASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 242 lp----~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++ ...++||.|++. +++.+-++ ...+|.++.++|||||+++.+|...
T Consensus 315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 315 LLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 75 446789999963 45555454 3477999999999999999887653
No 124
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.30 E-value=1.6e-11 Score=105.29 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=101.5
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
..+.||.|+|.|+.+..+.... ..+|-.+|+.+..++.|++.+... ...-.++++..++++....++||+|++.++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~---~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD---NPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG---GCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc---CCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 4689999999999998775443 349999999999999999876553 124467788888887655689999999999
Q ss_pred cccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 258 IHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 258 l~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
+-|+.|.+ .+|++....|+|+|++++-+......... .+.....-..+.+.+++++++||+++++..
T Consensus 132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~-----------~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDE-----------FDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEE-----------EETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcc-----------cCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 99998765 99999999999999999988765422100 011112223477899999999999999855
Q ss_pred e
Q 018740 336 R 336 (351)
Q Consensus 336 ~ 336 (351)
.
T Consensus 201 ~ 201 (218)
T PF05891_consen 201 K 201 (218)
T ss_dssp E
T ss_pred c
Confidence 4
No 125
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.6e-10 Score=105.28 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=101.5
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc--
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA-- 257 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v-- 257 (351)
+|||+|||+|..+..++...+..+|+|+|+|+.+++.|++++... |. .++.++..|+..-- .++||+|+++=-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~-~l--~~~~~~~~dlf~~~--~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN-GL--VRVLVVQSDLFEPL--RGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc-CC--ccEEEEeeeccccc--CCceeEEEeCCCCC
Confidence 799999999999999999998889999999999999999999887 32 66677777764421 248999998721
Q ss_pred ---cccC-C-----Ch--------------HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccC
Q 018740 258 ---IHCW-S-----SP--------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF 314 (351)
Q Consensus 258 ---l~h~-~-----d~--------------~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (351)
..+. + +| ..++.++.+.|+|||.+++..- +
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g---------------------------~ 240 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG---------------------------L 240 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC---------------------------C
Confidence 1111 1 22 3677888999999999888432 1
Q ss_pred CCHHHHHHHHHHCC-CeEEEEE--ecCeEEEEEEecC
Q 018740 315 LSEREIEDLCRACG-LVDFKCT--RNRGFVMFTATKP 348 (351)
Q Consensus 315 ~s~~~l~~ll~~aG-f~~v~~~--~~g~~~~~~a~kp 348 (351)
-..+.+.+++++.| |..+... ..|...++.+.+.
T Consensus 241 ~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~~ 277 (280)
T COG2890 241 TQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKLR 277 (280)
T ss_pred CcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEEec
Confidence 24578999999999 6655533 3455566665543
No 126
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.29 E-value=4.9e-11 Score=102.71 Aligned_cols=106 Identities=21% Similarity=0.250 Sum_probs=78.6
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--- 243 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--- 243 (351)
....+....++.+|||+|||+|.++..+++.. +..+++|+|+|+.+ . .+++.++++|+.+.+
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~----~~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------P----IENVDFIRGDFTDEEVLN 88 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------c----CCCceEEEeeCCChhHHH
Confidence 33334445678899999999999999888775 34579999999854 1 356888999987643
Q ss_pred -----CCCCceeeEEecccc--------ccCC---ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 -----FASSSIDAVHAGAAI--------HCWS---SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 -----~~~~~fD~V~~~~vl--------~h~~---d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++.++||+|++.... +|.. +...++.++.++|+|||.+++..+.
T Consensus 89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 346789999986432 2211 1357899999999999999986543
No 127
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.29 E-value=1.2e-10 Score=103.33 Aligned_cols=140 Identities=19% Similarity=0.338 Sum_probs=108.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
...+..+...++..||.+|||.|.|+|.++..|++. ++.++|+.+|+.++..+.|++++... |. ..++.+...|+.+
T Consensus 26 pkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-gl-~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 26 PKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-GL-DDNVTVHHRDVCE 103 (247)
T ss_dssp HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-TC-CTTEEEEES-GGC
T ss_pred CchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-CC-CCCceeEecceec
Confidence 444567888899999999999999999999999975 77889999999999999999999987 43 5689999999965
Q ss_pred CCCC---CCceeeEEeccccccCCChHHHHHHHHhcc-cCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCH
Q 018740 242 LPFA---SSSIDAVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE 317 (351)
Q Consensus 242 lp~~---~~~fD~V~~~~vl~h~~d~~~~l~~i~~~L-kpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 317 (351)
-.+. +..+|.|+. .+++|..++..+.++| +|||++.+-.|+.+ + .
T Consensus 104 ~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie----------Q----------------v 152 (247)
T PF08704_consen 104 EGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIE----------Q----------------V 152 (247)
T ss_dssp G--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHH----------H----------------H
T ss_pred ccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHH----------H----------------H
Confidence 4442 367999984 5789999999999999 89999998777632 1 1
Q ss_pred HHHHHHHHHCCCeEEEEE
Q 018740 318 REIEDLCRACGLVDFKCT 335 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v~~~ 335 (351)
....+.|++.||..++.+
T Consensus 153 ~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 153 QKTVEALREHGFTDIETV 170 (247)
T ss_dssp HHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHCCCeeeEEE
Confidence 245667788899887743
No 128
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.27 E-value=2.7e-11 Score=106.32 Aligned_cols=97 Identities=20% Similarity=0.229 Sum_probs=79.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
...++||||.|.|..+..++..+. +|++.|.|+.|....+++ +.+++ +..++.-.+.+||+|.|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k----------g~~vl--~~~~w~~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK----------GFTVL--DIDDWQQTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC----------CCeEE--ehhhhhccCCceEEEeehh
Confidence 356899999999999999999877 899999999997777653 23333 3333332356899999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+|..-.+|..+|+++++.|+|+|++++....
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 9999999999999999999999999886643
No 129
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.27 E-value=1.2e-11 Score=105.37 Aligned_cols=153 Identities=20% Similarity=0.265 Sum_probs=114.7
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
...++||||+-|...+.+...+ ..+++-+|.|-.|++.++..- .+........+|-+.++|.++++|+|+++..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~q-----dp~i~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQ-----DPSIETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccC-----CCceEEEEEecchhcccccccchhhhhhhhh
Confidence 4589999999999999999987 458999999999999998631 1134466778899999999999999999999
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHH-HHHHhhccCCccCCC-HHHHHHHHHHCCCeEEEEE
Q 018740 258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL-RQNMMQISGSYTFLS-EREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 258 l~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s-~~~l~~ll~~aGf~~v~~~ 335 (351)
+|++.|...-+.++...|||+|.++.+....+......-.+.-. ........+|..-|+ ..++-.+|.++||....+.
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence 99999999999999999999999998877765321111000000 001112334544443 4789999999999876543
Q ss_pred e
Q 018740 336 R 336 (351)
Q Consensus 336 ~ 336 (351)
.
T Consensus 227 t 227 (325)
T KOG2940|consen 227 T 227 (325)
T ss_pred c
Confidence 3
No 130
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.25 E-value=7.1e-11 Score=109.70 Aligned_cols=111 Identities=26% Similarity=0.288 Sum_probs=80.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CC------CCCCeEEEEecCCCC------C
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NF------PKENFLLVRADISRL------P 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~------~~~~i~~~~~d~~~l------p 243 (351)
++.+|||+|||.|.-+.-+.... -..++|+|++...++.|+++..... +. ..-...++.+|.... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999988777777765 3599999999999999999983310 00 013467788887532 2
Q ss_pred CCCCceeeEEeccccccCCC-h---HHHHHHHHhcccCCcEEEEEeecc
Q 018740 244 FASSSIDAVHAGAAIHCWSS-P---STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d-~---~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.....||+|-|.++||+.-. . ..+|+++...|+|||+++.+++..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 22359999999999999743 2 368999999999999999999875
No 131
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=1.5e-10 Score=97.89 Aligned_cols=109 Identities=10% Similarity=0.108 Sum_probs=83.4
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+.+.+...++.+|||+|||+|.++..+++++. +++++|+++.+++.+++++.. ..+++++.+|+.++++++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCccc
Confidence 3455666666778999999999999999999854 999999999999999988643 368999999999998777
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhc--ccCCcEEEEEe
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRV--LRPGGVFVGTT 285 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~--LkpgG~li~~~ 285 (351)
..||.|+++--+ |+. ...+.++.+. +.++|.+++..
T Consensus 76 ~~~d~vi~n~Py-~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 76 LQPYKVVGNLPY-NIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cCCCEEEECCCc-ccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 779999886543 332 2344444432 34778777754
No 132
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.24 E-value=1.1e-10 Score=105.90 Aligned_cols=116 Identities=19% Similarity=0.137 Sum_probs=90.5
Q ss_pred HhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCc
Q 018740 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (351)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~ 248 (351)
...+.+.++.+|||+|||+|..+..+++... ...|+++|+++.+++.++++++.. | ..++.++..|...++...+.
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~-g--~~~v~~~~~D~~~~~~~~~~ 140 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC-G--VLNVAVTNFDGRVFGAAVPK 140 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc-C--CCcEEEecCCHHHhhhhccC
Confidence 3455677788999999999999998887642 358999999999999999999876 2 35789999998776655567
Q ss_pred eeeEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 249 IDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 249 fD~V~~~------~vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
||.|++. +++.+-++ ...+|+++.+.|||||+++.++-..
T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999963 22322221 1358999999999999999887654
No 133
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=9.3e-11 Score=113.35 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=94.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp- 243 (351)
...+...+.+.++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.++++++.. | ..++.+..+|...++
T Consensus 226 s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~-g--~~~v~~~~~Da~~l~~ 302 (431)
T PRK14903 226 SQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL-K--LSSIEIKIADAERLTE 302 (431)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCeEEEEECchhhhhh
Confidence 3445556677788999999999999998888763 3469999999999999999998876 3 356899999998775
Q ss_pred CCCCceeeEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 FASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 ~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
+..++||.|++. +++.+-++ ..++|.++.+.|||||.++.+|-...
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 446789999963 22322221 24678999999999999999887653
No 134
>PRK04457 spermidine synthase; Provisional
Probab=99.21 E-value=1.2e-10 Score=105.33 Aligned_cols=108 Identities=13% Similarity=0.163 Sum_probs=84.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CCCCCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~ 255 (351)
++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++... + ..++++++.+|+.+. +-..++||+|++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-~-~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP-E-NGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC-C-CCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 467899999999999999999888889999999999999999987543 0 147899999998543 2223679999975
Q ss_pred cccc--cCC---ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 256 AAIH--CWS---SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 256 ~vl~--h~~---d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
. ++ ..+ ....+++++.+.|+|||++++..+.
T Consensus 144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 3 21 111 1258899999999999999996543
No 135
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=2.3e-10 Score=111.38 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=91.2
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
.....+...++.+|||+|||+|..+..+++.. ...+|+++|+|+.+++.+++++... | ..++.++.+|+..++ ++
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-g--~~~v~~~~~Da~~~~-~~ 316 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL-G--ITIIETIEGDARSFS-PE 316 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-C--CCeEEEEeCcccccc-cC
Confidence 44455666778899999999999988887753 2358999999999999999998876 3 357999999998875 45
Q ss_pred CceeeEEec------cccccCC------C----------hHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 247 SSIDAVHAG------AAIHCWS------S----------PSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 247 ~~fD~V~~~------~vl~h~~------d----------~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
++||+|++. +++.+-+ + ...+|.++.+.|+|||++++++....
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 789999952 2221111 1 23689999999999999999887653
No 136
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.21 E-value=1.6e-10 Score=99.77 Aligned_cols=101 Identities=22% Similarity=0.369 Sum_probs=82.5
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C--CCCCceeeEEecc
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVHAGA 256 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p--~~~~~fD~V~~~~ 256 (351)
.+||||||.|.++..++...|+..++|+|+....+..+.+++... ...|+.++++|+..+ + ++++++|.|+.+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~---~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~- 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR---GLKNVRFLRGDARELLRRLFPPGSVDRIYIN- 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH---TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh---cccceEEEEccHHHHHhhcccCCchheEEEe-
Confidence 899999999999999999999999999999999999999988876 368999999999873 2 456899999864
Q ss_pred ccccCCCh-------------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 257 AIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 257 vl~h~~d~-------------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+||| ..+|..+.++|+|||.+.+.|-..
T Consensus 96 ----FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 96 ----FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE 136 (195)
T ss_dssp ----S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred ----CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence 3454 488999999999999999977553
No 137
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=2e-10 Score=111.84 Aligned_cols=118 Identities=25% Similarity=0.239 Sum_probs=91.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp- 243 (351)
...+...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++... | ..++.++.+|+..++
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~-g--~~~v~~~~~D~~~~~~ 315 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL-G--LTNIETKALDARKVHE 315 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCeEEEEeCCcccccc
Confidence 3455556677778899999999999999998863 4569999999999999999998876 3 356999999998763
Q ss_pred -CCCCceeeEEecc------ccccCCC----------------hHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 -FASSSIDAVHAGA------AIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 -~~~~~fD~V~~~~------vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++ ++||+|++.. ++.+-++ ...+|+++.++|||||.++.++-.
T Consensus 316 ~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 316 KFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred hhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 23 6899999742 2222221 135799999999999999987654
No 138
>PRK01581 speE spermidine synthase; Validated
Probab=99.19 E-value=2.8e-10 Score=105.51 Aligned_cols=148 Identities=18% Similarity=0.120 Sum_probs=100.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--Hhhh--CCCCCCCeEEEEecCCC-CCCCCCceee
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQE--SNFPKENFLLVRADISR-LPFASSSIDA 251 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~--~~~~--~g~~~~~i~~~~~d~~~-lp~~~~~fD~ 251 (351)
.+.+||+||||+|..+..+.+..+..+|+++|+++.+++.|++. +... .....++++++.+|+.+ ++...+.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 35699999999999999998876567999999999999999962 1111 01235899999999876 3444578999
Q ss_pred EEeccccccCCC------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 252 VHAGAAIHCWSS------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 252 V~~~~vl~h~~d------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
|++... ..... -..+++.+++.|+|||++++.... ++... . ....+.+.++
T Consensus 230 IIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s--------p~~~~--~------------~~~~i~~tL~ 286 (374)
T PRK01581 230 IIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNS--------PADAP--L------------VYWSIGNTIE 286 (374)
T ss_pred EEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC--------hhhhH--H------------HHHHHHHHHH
Confidence 998632 11100 146899999999999998875322 11000 0 0123678889
Q ss_pred HCCCeEEEEEe-----cCeEEEEEEec
Q 018740 326 ACGLVDFKCTR-----NRGFVMFTATK 347 (351)
Q Consensus 326 ~aGf~~v~~~~-----~g~~~~~~a~k 347 (351)
++|+.+..... .+.|.+..|.|
T Consensus 287 ~af~~v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 287 HAGLTVKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred HhCCceEEEEEecCCCCCceEEEEEeC
Confidence 99997765222 23355666654
No 139
>PRK00811 spermidine synthase; Provisional
Probab=99.18 E-value=1.7e-10 Score=105.50 Aligned_cols=109 Identities=15% Similarity=0.187 Sum_probs=83.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CC-CCCCeEEEEecCCCC-CCCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NF-PKENFLLVRADISRL-PFASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~-~~~~i~~~~~d~~~l-p~~~~~fD~V~ 253 (351)
.+.+||+||||+|..+..+.+.....+|+++|+++.+++.|++.+.... +. ..++++++.+|+... +...++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999887445689999999999999999876431 11 257899999998653 33467899999
Q ss_pred eccccccCCC----hHHHHHHHHhcccCCcEEEEEe
Q 018740 254 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 254 ~~~vl~h~~d----~~~~l~~i~~~LkpgG~li~~~ 285 (351)
+...-.+.+. ...+++.+++.|+|||++++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 8543222221 1577899999999999998753
No 140
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.18 E-value=1.2e-10 Score=100.19 Aligned_cols=149 Identities=18% Similarity=0.232 Sum_probs=99.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC---CCC-------------------------
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---NFP------------------------- 228 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---g~~------------------------- 228 (351)
.+..+|||||..|.++..+++.+....++|+||++..++.|++.+.... +..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4678999999999999999998766789999999999999998764321 000
Q ss_pred -----------CCCeEEEEecCCCCCCCCCceeeEEeccccccC----CC--hHHHHHHHHhcccCCcEEEEEeeccCCC
Q 018740 229 -----------KENFLLVRADISRLPFASSSIDAVHAGAAIHCW----SS--PSTGVAEISRVLRPGGVFVGTTYIVDGP 291 (351)
Q Consensus 229 -----------~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~----~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~ 291 (351)
..|..+...|+. .+....||+|+|..+-.++ .| ...+++++.++|.|||+|++.-...++
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWks- 214 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKS- 214 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHH-
Confidence 011112222222 2345689999997764332 22 458999999999999999996554332
Q ss_pred CCcchHHHHHHHHHhh-ccCCccCCCHHHHHHHHHHC--CCeEEE
Q 018740 292 FNLIPFSRLLRQNMMQ-ISGSYTFLSEREIEDLCRAC--GLVDFK 333 (351)
Q Consensus 292 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~l~~ll~~a--Gf~~v~ 333 (351)
+....+..... ......++.++.+..++.+. ||+-++
T Consensus 215 -----Y~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 215 -----YKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred -----HHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 22222221111 12233567889999999876 665544
No 141
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=99.17 E-value=5.5e-10 Score=95.59 Aligned_cols=130 Identities=13% Similarity=0.244 Sum_probs=102.1
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC---CCceeeEEec
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAVHAG 255 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~---~~~fD~V~~~ 255 (351)
.++|||||=+..+...- .+ .-.|+.||+++. .+ .+.+.|+.+.|.+ ++.||+|.++
T Consensus 53 lrlLEVGals~~N~~s~--~~-~fdvt~IDLns~----------------~~--~I~qqDFm~rplp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SG-WFDVTRIDLNSQ----------------HP--GILQQDFMERPLPKNESEKFDVISLS 111 (219)
T ss_pred ceEEeecccCCCCcccc--cC-ceeeEEeecCCC----------------CC--CceeeccccCCCCCCcccceeEEEEE
Confidence 59999999765543332 22 236999999762 22 3578899887764 6799999999
Q ss_pred cccccCCChH---HHHHHHHhcccCCcE-----EEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHC
Q 018740 256 AAIHCWSSPS---TGVAEISRVLRPGGV-----FVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 327 (351)
Q Consensus 256 ~vl~h~~d~~---~~l~~i~~~LkpgG~-----li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~a 327 (351)
.||.++|+|. .+++.+.+.|+|+|. |+++.|..- . .+-+|++.+.+..+++..
T Consensus 112 LVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C----------------v---~NSRy~~~~~l~~im~~L 172 (219)
T PF11968_consen 112 LVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC----------------V---TNSRYMTEERLREIMESL 172 (219)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH----------------h---hcccccCHHHHHHHHHhC
Confidence 9999999986 889999999999999 888877531 0 155789999999999999
Q ss_pred CCeEEEEEecCeEEEEEEecC
Q 018740 328 GLVDFKCTRNRGFVMFTATKP 348 (351)
Q Consensus 328 Gf~~v~~~~~g~~~~~~a~kp 348 (351)
||..++.........+..+|.
T Consensus 173 Gf~~~~~~~~~Kl~y~l~r~~ 193 (219)
T PF11968_consen 173 GFTRVKYKKSKKLAYWLFRKS 193 (219)
T ss_pred CcEEEEEEecCeEEEEEEeec
Confidence 999999887777666666654
No 142
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.16 E-value=1.3e-10 Score=103.94 Aligned_cols=112 Identities=26% Similarity=0.399 Sum_probs=88.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC---CCCeEEEEecCCC------CCCCCC
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP---KENFLLVRADISR------LPFASS 247 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~---~~~i~~~~~d~~~------lp~~~~ 247 (351)
++..++|+|||.|.-+..+-+.+- ..++|+||++..+++|+++.....+.. .-.+.|+.+|... +++++.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 477899999999988888877763 589999999999999999887642110 1246889998743 355566
Q ss_pred ceeeEEeccccccC-C---ChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 248 SIDAVHAGAAIHCW-S---SPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 248 ~fD~V~~~~vl~h~-~---d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
+||+|-|.+++|+- . ....+|+++.+.|+|||++|.+.|+.+
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 69999999999874 3 235789999999999999999998763
No 143
>PLN02672 methionine S-methyltransferase
Probab=99.15 E-value=8.2e-10 Score=115.56 Aligned_cols=130 Identities=16% Similarity=0.128 Sum_probs=94.5
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCC--------------CCCCeEEEEecCCCCC
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF--------------PKENFLLVRADISRLP 243 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~--------------~~~~i~~~~~d~~~lp 243 (351)
+.+|||+|||+|..+..+++..+..+|+|+|+|+.+++.|++++..+ +. ...+++++++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n-~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLN-ALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CcccccccccccccccccccEEEEECchhhhc
Confidence 46899999999999999999887779999999999999999998764 11 1247999999987643
Q ss_pred CC-CCceeeEEecc--------------ccccC--------------------CCh----HHHHHHHHhcccCCcEEEEE
Q 018740 244 FA-SSSIDAVHAGA--------------AIHCW--------------------SSP----STGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 244 ~~-~~~fD~V~~~~--------------vl~h~--------------------~d~----~~~l~~i~~~LkpgG~li~~ 284 (351)
.. ...||+|+++= +.+|- .|- .+++.++.++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11 23699999872 11110 111 46677888899999999885
Q ss_pred eeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH-HHHHHCCCeEEEEE
Q 018740 285 TYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE-DLCRACGLVDFKCT 335 (351)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~-~ll~~aGf~~v~~~ 335 (351)
.-.. -.+.+. +++++.||..++.+
T Consensus 278 iG~~---------------------------q~~~v~~~l~~~~gf~~~~~~ 302 (1082)
T PLN02672 278 MGGR---------------------------PGQAVCERLFERRGFRITKLW 302 (1082)
T ss_pred ECcc---------------------------HHHHHHHHHHHHCCCCeeEEe
Confidence 4321 223566 57788888776644
No 144
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.14 E-value=1.4e-09 Score=98.94 Aligned_cols=107 Identities=13% Similarity=0.157 Sum_probs=81.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCC-CCCCCeEEEEecCCCC-CCCCCceeeEEec
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-FPKENFLLVRADISRL-PFASSSIDAVHAG 255 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g-~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~ 255 (351)
+.+||+||||+|.++..+.+..+..+++++|+++.+++.+++.+....+ ...++++++.+|.... ....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 4599999999999999998876556899999999999999998754311 1246788888887542 2224689999986
Q ss_pred cccccCCC----hHHHHHHHHhcccCCcEEEEE
Q 018740 256 AAIHCWSS----PSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 256 ~vl~h~~d----~~~~l~~i~~~LkpgG~li~~ 284 (351)
.....-+. ...+++.+++.|+|||++++.
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 54221111 347789999999999999986
No 145
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.11 E-value=1e-09 Score=100.16 Aligned_cols=147 Identities=12% Similarity=0.133 Sum_probs=108.6
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecccc
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 258 (351)
...+|+|.|.|+.+..+...+| ++-|++++...+-.+...+. +.|+.+.+|+.+- .| .-|+|++.++|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P--~~daI~mkWiL 246 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TP--KGDAIWMKWIL 246 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CC--CcCeEEEEeec
Confidence 6899999999999999999888 79999999877777766532 5588888998654 23 34699999999
Q ss_pred ccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcc----hHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEE
Q 018740 259 HCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLI----PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF 332 (351)
Q Consensus 259 ~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v 332 (351)
|||.|.+ ++|++++..|+|||.+++.+...+...... ..................-.+..+++.++.++||.+.
T Consensus 247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~ 326 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVC 326 (342)
T ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCcee
Confidence 9999875 999999999999999999888554211111 1111112222222223455689999999999999988
Q ss_pred EEEec
Q 018740 333 KCTRN 337 (351)
Q Consensus 333 ~~~~~ 337 (351)
...-.
T Consensus 327 ~~~~~ 331 (342)
T KOG3178|consen 327 MVALT 331 (342)
T ss_pred EEEec
Confidence 75443
No 146
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.10 E-value=7.9e-10 Score=97.05 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=87.3
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC---CCCCCceeeEEe
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFASSSIDAVHA 254 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l---p~~~~~fD~V~~ 254 (351)
...+||||||.|.++..+++..|+..++|||+....+..|.+++.+. + ..|+.+++.|+..+ -+++++.|-|..
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~-~--l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL-G--LKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc-C--CCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 35899999999999999999999999999999999999999998887 2 23999999998664 135669999996
Q ss_pred ccccccCCCh-------------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 255 GAAIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 255 ~~vl~h~~d~-------------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++ ||| ..+|+.+.++|+|||.+.+.|-..
T Consensus 126 ~F-----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 126 NF-----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred EC-----CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 54 454 488999999999999999977553
No 147
>PRK03612 spermidine synthase; Provisional
Probab=99.09 E-value=8.2e-10 Score=109.34 Aligned_cols=109 Identities=15% Similarity=0.091 Sum_probs=82.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HhhhC--CCCCCCeEEEEecCCCC-CCCCCceee
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQES--NFPKENFLLVRADISRL-PFASSSIDA 251 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~--~~~~~--g~~~~~i~~~~~d~~~l-p~~~~~fD~ 251 (351)
++++|||||||+|..+..+.+.....+++++|+++++++.++++ +.... ....++++++.+|..+. ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 46799999999999999998864336999999999999999983 32210 12247899999998763 333568999
Q ss_pred EEeccccccCCCh-----HHHHHHHHhcccCCcEEEEEe
Q 018740 252 VHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 252 V~~~~vl~h~~d~-----~~~l~~i~~~LkpgG~li~~~ 285 (351)
|++...-...+.+ ..+++.+++.|+|||++++..
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9987543322222 357899999999999998864
No 148
>PHA03412 putative methyltransferase; Provisional
Probab=99.09 E-value=1.3e-09 Score=95.30 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=82.7
Q ss_pred cCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe
Q 018740 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232 (351)
Q Consensus 156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i 232 (351)
.+.|+.|..++..+... ...+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|+++ ..++
T Consensus 30 ~GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n--------~~~~ 99 (241)
T PHA03412 30 LGAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI--------VPEA 99 (241)
T ss_pred CCccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh--------ccCC
Confidence 35566777766655422 2236799999999999999988753 245899999999999999975 3568
Q ss_pred EEEEecCCCCCCCCCceeeEEeccccccC--CC----------hHHHHHHHHhcccCCcE
Q 018740 233 LLVRADISRLPFASSSIDAVHAGAAIHCW--SS----------PSTGVAEISRVLRPGGV 280 (351)
Q Consensus 233 ~~~~~d~~~lp~~~~~fD~V~~~~vl~h~--~d----------~~~~l~~i~~~LkpgG~ 280 (351)
.++.+|+...++ +++||+|+++=-+.-. .+ ...+++.+.+++++|+.
T Consensus 100 ~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 100 TWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 899999987664 5689999997433211 11 24678888886666654
No 149
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.07 E-value=1.1e-09 Score=97.43 Aligned_cols=116 Identities=11% Similarity=0.118 Sum_probs=87.9
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P- 243 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p- 243 (351)
..+.......++++|||+|||+|..+..++.. .+..+++++|+++.+++.|+++++.. |. ..+++++.+|+.+. +
T Consensus 58 ~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-gl-~~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 58 LFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-GV-DHKINFIQSDALSALDQ 135 (234)
T ss_pred HHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEEccHHHHHHH
Confidence 33444444455779999999999988888775 33579999999999999999999887 44 36899999998653 2
Q ss_pred ----CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.+.++||+|+....= +.....+..+.+.|+|||++++....
T Consensus 136 l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred HHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 124689999974321 23357789999999999998875543
No 150
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.07 E-value=1.6e-09 Score=110.91 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=82.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CCCCCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~ 255 (351)
++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++++..+ |....+++++++|+.+. .-..++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~n-g~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALN-GLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHh-CCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 367999999999999999998763 47999999999999999999887 43225799999998653 1114689999985
Q ss_pred cc-----------cccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 256 AA-----------IHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 256 ~v-----------l~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
-- .....+...++..+.++|+|||.+++.+
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 21 1112234567888899999999998754
No 151
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.07 E-value=2.4e-09 Score=104.29 Aligned_cols=114 Identities=20% Similarity=0.328 Sum_probs=86.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+.+.+.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++... + ..++.++.+|+.+.
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~-~--~~~v~~~~~d~~~~ 357 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRN-G--LDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEEeChHHh
Confidence 34456666677766778999999999999999998875 9999999999999999998766 2 35799999998642
Q ss_pred ----CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 243 ----PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 243 ----p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
++.+++||+|++.---. .....++.+.+ ++|+++++++.
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhhhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEe
Confidence 34456899999742211 12344555555 68999988875
No 152
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.07 E-value=1.5e-09 Score=103.54 Aligned_cols=108 Identities=18% Similarity=0.191 Sum_probs=79.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----CCCCceeeE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAV 252 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~~fD~V 252 (351)
++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|++++..+ |....+++++++|+.+.- ...++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~N-gl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELN-KLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc-CCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 36799999999999988766554 358999999999999999999887 332247999999987641 124689999
Q ss_pred Eecccccc---------CCChHHHHHHHHhcccCCcEEEEEee
Q 018740 253 HAGAAIHC---------WSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 253 ~~~~vl~h---------~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
++.--... ..+-..+++.+.++|+|||.++..+-
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 98632110 01123445567899999999987553
No 153
>PLN02366 spermidine synthase
Probab=99.03 E-value=2.4e-09 Score=98.66 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=82.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CCCCCCCeEEEEecCCCC-C-CCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL-P-FASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g~~~~~i~~~~~d~~~l-p-~~~~~fD~V~ 253 (351)
.+++||+||||.|..+..+++.....+|+.+|+++.+++.+++.+... .+...++++++.+|+... . .++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 467999999999999999988744468999999999999999987642 122357899999997442 1 2256899999
Q ss_pred eccccccCCC----hHHHHHHHHhcccCCcEEEEE
Q 018740 254 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 254 ~~~vl~h~~d----~~~~l~~i~~~LkpgG~li~~ 284 (351)
+...-.+.+. ...+++.+++.|+|||+++..
T Consensus 171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 8543322221 136799999999999998764
No 154
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.00 E-value=8.2e-09 Score=89.22 Aligned_cols=120 Identities=11% Similarity=0.114 Sum_probs=84.2
Q ss_pred HHHHHHHHhccCC-CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
+...+.+...+.. .++.+|||+|||+|.++..++.++. .+|+++|.++.+++.++++++.. + ..++.++++|+.+
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~-~--~~~v~~~~~D~~~ 113 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATL-K--AGNARVVNTNALS 113 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHh-C--CCcEEEEEchHHH
Confidence 3444445554432 3467999999999999987655553 59999999999999999998876 2 3579999999865
Q ss_pred C-CCCCCceeeEEeccccccCCChHHHHHHHHh--cccCCcEEEEEeec
Q 018740 242 L-PFASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI 287 (351)
Q Consensus 242 l-p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~--~LkpgG~li~~~~~ 287 (351)
. +...++||+|++.--... .-...+++.+.. +|+|+|++++....
T Consensus 114 ~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 114 FLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 3 222457999998655321 122344555554 47899999887543
No 155
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.99 E-value=3.8e-09 Score=98.31 Aligned_cols=113 Identities=12% Similarity=0.183 Sum_probs=80.9
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
+.+.+.+++...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++... + ..+++++++|+.++..
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~-~--l~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAEL-G--LTNVQFQALDSTQFAT 235 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEEcCHHHHHH
Confidence 344455555544568999999999999999999765 9999999999999999998776 2 3579999999977542
Q ss_pred -CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 -ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 -~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..+.||+|++.---. .....+.++...++|+++++++.
T Consensus 236 ~~~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 236 AQGEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred hcCCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEEEC
Confidence 245799999752200 11122333344467887777754
No 156
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.98 E-value=8.4e-09 Score=100.26 Aligned_cols=113 Identities=17% Similarity=0.216 Sum_probs=84.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL- 242 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l- 242 (351)
.+.+.+...+...++.+|||+|||+|.++..+++... +|+|+|+++.+++.|++++..+ + ..+++++.+|+.+.
T Consensus 279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~-~--~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELN-G--IANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHh-C--CCceEEEeCCHHHHH
Confidence 3445566666666678999999999999999998865 8999999999999999998776 2 46899999998652
Q ss_pred ---CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 243 ---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 243 ---p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
++.+++||+|++.-.= ..-...+++.+.+ ++|+++++++
T Consensus 354 ~~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHhcCCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEc
Confidence 2335679999963220 0112455665554 8898887774
No 157
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.97 E-value=4.4e-09 Score=90.21 Aligned_cols=155 Identities=18% Similarity=0.187 Sum_probs=107.9
Q ss_pred HhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CCCCC
Q 018740 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASS 247 (351)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~ 247 (351)
.+.++...+.+|||...|-|+.+....++|. ..|+-++.+++.++.|.-+--.. +....+++++.+|+.++ .++|.
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr-~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSR-ELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCc-cccccccEEecccHHHHHhcCCcc
Confidence 3445666789999999999999999999984 58999999999999887542111 22234689999998664 47799
Q ss_pred ceeeEEeccc-cccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCC-CHHHHHHH
Q 018740 248 SIDAVHAGAA-IHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFL-SEREIEDL 323 (351)
Q Consensus 248 ~fD~V~~~~v-l~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~l~~l 323 (351)
+||+|+..-- +.+-. --..+.+|++|+|+|||.++-.+-+... .++-. -+..+.+.
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~--------------------ryrG~d~~~gVa~R 264 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK--------------------RYRGLDLPKGVAER 264 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc--------------------ccccCChhHHHHHH
Confidence 9999994210 00000 1247889999999999999886654321 01111 24678899
Q ss_pred HHHCCCeEEEEEecCeEEEEEEecC
Q 018740 324 CRACGLVDFKCTRNRGFVMFTATKP 348 (351)
Q Consensus 324 l~~aGf~~v~~~~~g~~~~~~a~kp 348 (351)
|+++||.+++..... ..+.|.||
T Consensus 265 Lr~vGF~~v~~~~~~--~gv~A~k~ 287 (287)
T COG2521 265 LRRVGFEVVKKVREA--LGVVAVKP 287 (287)
T ss_pred HHhcCceeeeeehhc--cceEEecC
Confidence 999999988755332 23345554
No 158
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.97 E-value=2.8e-08 Score=89.14 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=111.8
Q ss_pred HHHHHhccC----CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh---hC-------------
Q 018740 166 FELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ES------------- 225 (351)
Q Consensus 166 ~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~------------- 225 (351)
.+.|..... .....+||--|||.|+++..++..|. .+.|.|.|--|+-..+-.+.. ..
T Consensus 41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn 118 (270)
T PF07942_consen 41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSN 118 (270)
T ss_pred HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccC
Confidence 444555444 23456899999999999999999987 999999999987655543331 00
Q ss_pred ---------------------CCCCCCeEEEEecCCCCCCCC---CceeeEEeccccccCCChHHHHHHHHhcccCCcEE
Q 018740 226 ---------------------NFPKENFLLVRADISRLPFAS---SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 281 (351)
Q Consensus 226 ---------------------g~~~~~i~~~~~d~~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~l 281 (351)
-....++....+|+..+..++ ++||+|+.++.|.-..+....++.|.++|||||+.
T Consensus 119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~W 198 (270)
T PF07942_consen 119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYW 198 (270)
T ss_pred CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEE
Confidence 001245777778887764444 79999999999988888999999999999999977
Q ss_pred EEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEEe
Q 018740 282 VGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 282 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~ 336 (351)
+=..|-.-+..+.. ...+..--++.+++..+++..||++++...
T Consensus 199 IN~GPLlyh~~~~~-----------~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 199 INFGPLLYHFEPMS-----------IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred EecCCccccCCCCC-----------CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 65444322111000 000112457899999999999999987544
No 159
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1e-08 Score=85.70 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=65.7
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
..-.+.+|+|+|||||.++...+-.|+ ..|+|+|+++++++.++++..+. ..+++++.+|+.++. ..+|.|+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv~~~~---~~~dtvi 113 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEEL----LGDVEFVVADVSDFR---GKFDTVI 113 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcchhhcC---CccceEE
Confidence 445577899999999999999998885 59999999999999999998876 688999999999874 5689888
Q ss_pred eccc
Q 018740 254 AGAA 257 (351)
Q Consensus 254 ~~~v 257 (351)
++--
T Consensus 114 mNPP 117 (198)
T COG2263 114 MNPP 117 (198)
T ss_pred ECCC
Confidence 8643
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.92 E-value=9.6e-09 Score=89.25 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=91.1
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE-ecCCCC-C
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRL-P 243 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~-~d~~~l-p 243 (351)
..+...+...++++|||||.+.|+.+..++...+ +.+++.+|+++++.+.|++++++. |. .+++..+. +|..+. .
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a-g~-~~~i~~~~~gdal~~l~ 126 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA-GV-DDRIELLLGGDALDVLS 126 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc-CC-cceEEEEecCcHHHHHH
Confidence 3444444555678999999999999999999877 789999999999999999999988 44 44588888 466432 2
Q ss_pred -CCCCceeeEEeccccccCC-ChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 -FASSSIDAVHAGAAIHCWS-SPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~-d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
...++||+|+. .+-. +-..+++.+.++|+|||++++-.....
T Consensus 127 ~~~~~~fDliFI----DadK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 127 RLLDGSFDLVFI----DADKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred hccCCCccEEEE----eCChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 34689999995 3332 346889999999999999998655444
No 161
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.92 E-value=9.6e-09 Score=92.88 Aligned_cols=87 Identities=13% Similarity=0.212 Sum_probs=72.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.++..++.+|||||||+|.++..+++.+. +++|+|+++.+++.+++++.. ..++.++.+|+.++
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~ 87 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKV 87 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccC
Confidence 44456677777777788999999999999999999865 999999999999999987643 36899999999988
Q ss_pred CCCCCceeeEEecccc
Q 018740 243 PFASSSIDAVHAGAAI 258 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl 258 (351)
+++ .||.|+++--.
T Consensus 88 ~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 88 DLP--EFNKVVSNLPY 101 (258)
T ss_pred Cch--hceEEEEcCCc
Confidence 764 48999886553
No 162
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=3.6e-09 Score=93.77 Aligned_cols=98 Identities=30% Similarity=0.463 Sum_probs=82.4
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+..++|+|||.|..+.. .|...++|.|++...+..+++. .......+|+.++|+.+.+||.+++..+
T Consensus 46 gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~---------~~~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS---------GGDNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred cceeeecccCCcccCcC----CCcceeeecchhhhhccccccC---------CCceeehhhhhcCCCCCCccccchhhhh
Confidence 77899999999976532 2566899999999999988863 2226788999999999999999999999
Q ss_pred cccCCCh---HHHHHHHHhcccCCcEEEEEeecc
Q 018740 258 IHCWSSP---STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 258 l~h~~d~---~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+||+... ..+++++.++|+|||...+..+..
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 9999754 488999999999999988877644
No 163
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.91 E-value=1.2e-08 Score=92.73 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=78.5
Q ss_pred CCeEEEEcCccCHHH----HHHHHhC----CCCeEEEEeCCHHHHHHHHHHHhh-h--C---------------C-C---
Q 018740 178 GGNIIDASCGSGLFS----RIFAKSG----LFSLVVALDYSENMLKQCYEFVQQ-E--S---------------N-F--- 227 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~----~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~-~--~---------------g-~--- 227 (351)
.-+|+..||++|.=. ..+.+.. ...+|+|+|+|+.+++.|++-.=. . + + .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999732 2223322 135899999999999999874200 0 0 0 0
Q ss_pred ------CCCCeEEEEecCCCCCCC-CCceeeEEeccccccCCC--hHHHHHHHHhcccCCcEEEEE
Q 018740 228 ------PKENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 228 ------~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~ 284 (351)
-...|.|.+.|+.+.+++ .+.||+|+|.+++.|+.. ..++++++.+.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 014578888888775543 578999999999999965 468999999999999998874
No 164
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.91 E-value=7.1e-09 Score=94.45 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=70.7
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
.....+.+.+.+...++.+|||||||+|.++..+++.++ +|+|+|+++.|++.+++++. .++++++.+|+.+
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~~ 98 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA------EDNLTIIEGDALK 98 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc------cCceEEEEChhhc
Confidence 345566777777777788999999999999999999986 99999999999999988642 2589999999998
Q ss_pred CCCCCCceeeEEecc
Q 018740 242 LPFASSSIDAVHAGA 256 (351)
Q Consensus 242 lp~~~~~fD~V~~~~ 256 (351)
+++++-.+|.|+++-
T Consensus 99 ~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 99 VDLSELQPLKVVANL 113 (272)
T ss_pred CCHHHcCcceEEEeC
Confidence 876542257777653
No 165
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.91 E-value=3.5e-08 Score=80.54 Aligned_cols=127 Identities=17% Similarity=0.229 Sum_probs=105.4
Q ss_pred hhcCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe
Q 018740 154 FVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i 232 (351)
-+..-.+...-.++.+...+....+.-|||+|.|||.++.++..++ ++..++.+|.|++......+. .+.+
T Consensus 25 tVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~ 96 (194)
T COG3963 25 TVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGV 96 (194)
T ss_pred eeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCc
Confidence 3444455666678888888999889999999999999999999886 356899999999999999886 5777
Q ss_pred EEEEecCCCCC-----CCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeecc
Q 018740 233 LLVRADISRLP-----FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 233 ~~~~~d~~~lp-----~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.++.+|+.++. ..+..||.|+|.--+-.++-. .+.|+++...|.+||.++..++..
T Consensus 97 ~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 97 NIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred cccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 79999998764 456789999998877777633 488999999999999999988763
No 166
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.88 E-value=2.2e-08 Score=84.93 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=75.7
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----CCCCcee
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSID 250 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~~fD 250 (351)
...+.+|||+|||+|..+..++......+|+..|.++ .++..+.++..+......++.+...|..+.. ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 4457899999999999999999884456999999998 9999999888761112466777777764411 2346899
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+|++..+++.-.....+++-+.++|+|+|.+++....+
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99999999986667789999999999999977776654
No 167
>PLN02476 O-methyltransferase
Probab=98.88 E-value=2.5e-08 Score=90.08 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=88.5
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CC-
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP- 243 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp- 243 (351)
..+...+...++++|||||+++|..+..++... +..+++.+|.++...+.|+++++.. |. ..+++++.+|+.+ ++
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a-Gl-~~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA-GV-SHKVNVKHGLAAESLKS 185 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEEcCHHHHHHH
Confidence 334444455557899999999999999998763 3568999999999999999999887 44 4689999999855 22
Q ss_pred C----CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 F----ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ~----~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+ ..++||+|+.-.. -.+....++.+.++|+|||++++....
T Consensus 186 l~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred HHhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 1 1368999996433 123457788999999999999885443
No 168
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.86 E-value=2.4e-08 Score=91.64 Aligned_cols=119 Identities=21% Similarity=0.284 Sum_probs=96.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-cCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d~~~ 241 (351)
.+.+..+.+.....+|..|||-=||||.++..+.-.|. +++|.|++..|++-|+.++... + .....+... |+.+
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y-~--i~~~~~~~~~Da~~ 257 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYY-G--IEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhh-C--cCceeEEEeccccc
Confidence 45566777777788899999999999999999888876 9999999999999999999876 1 356666666 9999
Q ss_pred CCCCCCceeeEEeccccc-----cCCC----hHHHHHHHHhcccCCcEEEEEee
Q 018740 242 LPFASSSIDAVHAGAAIH-----CWSS----PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~-----h~~d----~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+|++++++|.|++---.- .... ...+|+.+.++|++||++++..+
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999988999999742110 1111 24789999999999999998665
No 169
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.85 E-value=1.2e-08 Score=87.76 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=69.0
Q ss_pred CCCeEEEEcCccCHHH----HHHHHh-----CCCCeEEEEeCCHHHHHHHHHHH-hhh--C---------------CCC-
Q 018740 177 LGGNIIDASCGSGLFS----RIFAKS-----GLFSLVVALDYSENMLKQCYEFV-QQE--S---------------NFP- 228 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~----~~l~~~-----~~~~~v~gvD~s~~~~~~a~~~~-~~~--~---------------g~~- 228 (351)
+.-+|+..||++|.=. ..+.+. ....+++|.|+|+.+++.|++-. ... + |..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999732 222331 11468999999999999998622 000 0 100
Q ss_pred ------CCCeEEEEecCCCCCCCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEE
Q 018740 229 ------KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 229 ------~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~ 284 (351)
..++.|.+.|+.+.+...+.||+|+|.+||-++... ..+++.+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 136899999998844456889999999999999755 58899999999999999984
No 170
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=3.7e-08 Score=86.59 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=88.7
Q ss_pred HHHHHHHHhccCCC---CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC
Q 018740 163 EKEFELMKGYLKPV---LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239 (351)
Q Consensus 163 ~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~ 239 (351)
++.++.+.+.+... .+..|||+|||+|..+..++...+.+.|+++|.|+.++..|.+++... + ...++..+..++
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~-~-l~g~i~v~~~~m 208 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL-K-LSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH-h-hcCceEEEeccc
Confidence 44556666555432 345799999999999999999888899999999999999999998876 2 246677775544
Q ss_pred CC-----CCCCCCceeeEEecccc-cc--C-----------------------CChHHHHHHHHhcccCCcEEEEEeec
Q 018740 240 SR-----LPFASSSIDAVHAGAAI-HC--W-----------------------SSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 240 ~~-----lp~~~~~fD~V~~~~vl-~h--~-----------------------~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+. .+...+++|+++++--. -+ + .....++.-+.|+|+|||.+.+....
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 32 24557899999987321 00 0 00124566778999999999997764
No 171
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.85 E-value=1.4e-09 Score=103.47 Aligned_cols=114 Identities=24% Similarity=0.355 Sum_probs=79.9
Q ss_pred HHHHHHHHhccCC----CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHHHhhhCCCCCCCeEEE
Q 018740 163 EKEFELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVAL---DYSENMLKQCYEFVQQESNFPKENFLLV 235 (351)
Q Consensus 163 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~g~~~~~i~~~ 235 (351)
...++.|.+.+.. ..-..+||||||+|.|+..+.+++- .+..+ |..+..++.|.++ | +..+
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR-----G-----vpa~ 166 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER-----G-----VPAM 166 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc-----C-----cchh
Confidence 4455666666654 2224689999999999999999853 22222 3344555666553 2 2223
Q ss_pred Eec--CCCCCCCCCceeeEEeccccccCC-ChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 236 RAD--ISRLPFASSSIDAVHAGAAIHCWS-SPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 236 ~~d--~~~lp~~~~~fD~V~~~~vl~h~~-d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.+- -..+||++++||+|.|...+-.+. +-..+|-++.|+|+|||+++++.+-.
T Consensus 167 ~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 167 IGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 222 468999999999999999886654 33577999999999999999987653
No 172
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.3e-08 Score=84.59 Aligned_cols=111 Identities=23% Similarity=0.341 Sum_probs=85.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-C-CCCeEEEEeCCHHHHHHHHHHHhhhC-------CCCCCCeEEEE
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-G-LFSLVVALDYSENMLKQCYEFVQQES-------NFPKENFLLVR 236 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~v~gvD~s~~~~~~a~~~~~~~~-------g~~~~~i~~~~ 236 (351)
++.+...| .++.+.||+|+|+|+++..++.. + ++..++|||.-++.++.+++++.... .....++.++.
T Consensus 73 le~L~~~L--~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 73 LEYLDDHL--QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHhh--ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 44555444 45889999999999999888754 2 23355999999999999999887652 12246788999
Q ss_pred ecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 237 ~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
+|....-.+..+||.|++... .....+++...|+|||.+++-
T Consensus 151 GDgr~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCccccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEe
Confidence 999887667889999998744 334467788899999999884
No 173
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.83 E-value=6.3e-08 Score=87.34 Aligned_cols=85 Identities=12% Similarity=0.185 Sum_probs=69.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++.+|||||||+|.++..+++.++ .++++|+++.+++.+++++.. ..++.++.+|+..+
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKV 87 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcC
Confidence 44456677777777788999999999999999999986 799999999999999987533 36899999999988
Q ss_pred CCCCCcee---eEEecc
Q 018740 243 PFASSSID---AVHAGA 256 (351)
Q Consensus 243 p~~~~~fD---~V~~~~ 256 (351)
+++ .+| +|+++-
T Consensus 88 ~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 88 DLP--DFPKQLKVVSNL 102 (253)
T ss_pred Chh--HcCCcceEEEcC
Confidence 764 466 565543
No 174
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.83 E-value=5.1e-08 Score=83.10 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=83.3
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCe---------EEEEeCCHHHHHHHHHHHhhhCCCCCCCeEE
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL---------VVALDYSENMLKQCYEFVQQESNFPKENFLL 234 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~---------v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~ 234 (351)
.++..+.......++..|||--||+|.++...+..+.... ++|.|+++.+++.|++++... |. ...+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a-g~-~~~i~~ 92 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA-GV-EDYIDF 92 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-T--CGGEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-cc-CCceEE
Confidence 3455666666777788999999999999988877765445 889999999999999999876 33 456899
Q ss_pred EEecCCCCCCCCCceeeEEecccccc-CCCh-------HHHHHHHHhcccCCcEEEE
Q 018740 235 VRADISRLPFASSSIDAVHAGAAIHC-WSSP-------STGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 235 ~~~d~~~lp~~~~~fD~V~~~~vl~h-~~d~-------~~~l~~i~~~LkpgG~li~ 283 (351)
.+.|+.++++.++++|+|+++--.-. +.+. ..+++++.++|++ ..+++
T Consensus 93 ~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l 148 (179)
T PF01170_consen 93 IQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFL 148 (179)
T ss_dssp EE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEE
T ss_pred EecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEE
Confidence 99999999987889999998744321 1111 2668889999999 33333
No 175
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.82 E-value=1.8e-08 Score=87.43 Aligned_cols=107 Identities=13% Similarity=0.175 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-----CCCCc
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-----FASSS 248 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p-----~~~~~ 248 (351)
.+.++|||||+++|+.+..+++..+ .++++.+|+++...+.|++.+... |. ..+++++.+|+.+. + ...++
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a-g~-~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA-GL-DDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-TG-GGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-CC-CCcEEEEEeccHhhHHHHHhccCCCc
Confidence 3456999999999999999998754 579999999999999999999876 33 46899999998652 2 11358
Q ss_pred eeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
||+|+.-..= .+....++.+.++|+|||++++....
T Consensus 122 fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 122 FDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred eeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcccc
Confidence 9999975431 23457788899999999999985443
No 176
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.82 E-value=2.3e-07 Score=85.74 Aligned_cols=147 Identities=11% Similarity=0.089 Sum_probs=90.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE-ecCCCCC----CCCCceee
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLP----FASSSIDA 251 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~-~d~~~lp----~~~~~fD~ 251 (351)
.+.++||||||+|.....++.+.+.++++|+|+++.+++.|+++++.+.+ ...++.+.. .|...+. .+.+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~-l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG-LNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC-CcCcEEEEEccchhhhhhcccccCCceEE
Confidence 45799999999998888887776667999999999999999999887511 134677754 3333221 23678999
Q ss_pred EEeccccccCCCh-----HHHHHHH----------------HhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh---
Q 018740 252 VHAGAAIHCWSSP-----STGVAEI----------------SRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--- 307 (351)
Q Consensus 252 V~~~~vl~h~~d~-----~~~l~~i----------------~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--- 307 (351)
|+|+=-++--.+. ..-.+.+ .+++.+||.+-+..+... ........
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~----------eS~~~~~~~gw 262 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIE----------ESKAFAKQVLW 262 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhH----------HHHHHHhhCcE
Confidence 9998665432211 1112222 234456666555443321 11111111
Q ss_pred cc-CCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 308 IS-GSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 308 ~~-~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
+. -....-+...+.+.|++.|...+++
T Consensus 263 ftsmv~kk~~l~~l~~~L~~~~~~~~~~ 290 (321)
T PRK11727 263 FTSLVSKKENLPPLYRALKKVGAVEVKT 290 (321)
T ss_pred EEEEeeccCCHHHHHHHHHHcCCceEEE
Confidence 00 0011227899999999999966553
No 177
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.2e-07 Score=75.29 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=95.4
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
......+||||||+|..+..+++. +++..+.++|+++.+++..++-+..+ ..++..+++|+..-- ..++.|+++
T Consensus 41 ~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----~~~~~~V~tdl~~~l-~~~~VDvLv 115 (209)
T KOG3191|consen 41 GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----RVHIDVVRTDLLSGL-RNESVDVLV 115 (209)
T ss_pred hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----CCccceeehhHHhhh-ccCCccEEE
Confidence 333568999999999999998876 66778899999999999988877766 567889999986532 248899998
Q ss_pred eccccc-----cC------------CC----hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCc
Q 018740 254 AGAAIH-----CW------------SS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSY 312 (351)
Q Consensus 254 ~~~vl~-----h~------------~d----~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (351)
.+--.. .+ .| .++++..+-.+|.|.|++++.....+
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------------------- 172 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------------------- 172 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc-----------------------
Confidence 763221 11 01 23667777788899999998654322
Q ss_pred cCCCHHHHHHHHHHCCCeEEE
Q 018740 313 TFLSEREIEDLCRACGLVDFK 333 (351)
Q Consensus 313 ~~~s~~~l~~ll~~aGf~~v~ 333 (351)
.++++.++++.-||....
T Consensus 173 ---~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 173 ---KPKEILKILEKKGYGVRI 190 (209)
T ss_pred ---CHHHHHHHHhhcccceeE
Confidence 356788899999997654
No 178
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.80 E-value=6.9e-08 Score=93.42 Aligned_cols=102 Identities=15% Similarity=0.241 Sum_probs=72.5
Q ss_pred CCeEEEEcCccCHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 178 GGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
+..|||||||+|.++...++.+ ...+|+++|-++.+....++++..+ + -..+|+++.+|++++..+ .++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n-~-w~~~V~vi~~d~r~v~lp-ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN-G-WGDKVTVIHGDMREVELP-EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT-T-TTTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc-C-CCCeEEEEeCcccCCCCC-CceeEEE
Confidence 5689999999999988776664 2469999999999888877765544 2 257899999999998754 4899999
Q ss_pred eccc--cccCCChHHHHHHHHhcccCCcEEE
Q 018740 254 AGAA--IHCWSSPSTGVAEISRVLRPGGVFV 282 (351)
Q Consensus 254 ~~~v--l~h~~d~~~~l~~i~~~LkpgG~li 282 (351)
+-.. +-.-.-....|....|.|||||+++
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 7322 2111122356888899999999765
No 179
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.78 E-value=1e-07 Score=90.58 Aligned_cols=101 Identities=19% Similarity=0.222 Sum_probs=80.8
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+.+|||++||+|.++..++.......|+++|+++.+++.++++++.+ + ..++.+..+|+..+....+.||+|++.-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N-~--~~~~~v~~~Da~~~l~~~~~fD~V~lDP- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN-G--LENEKVFNKDANALLHEERKFDVVDIDP- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-C--CCceEEEhhhHHHHHhhcCCCCEEEECC-
Confidence 46899999999999999987654458999999999999999998876 2 3567789999866422145799999742
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 258 IHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 258 l~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
...+..++....+.+++||+++++.
T Consensus 134 ---~Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 ---FGSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ---CCCcHHHHHHHHHHhcCCCEEEEEe
Confidence 1455678888788899999999983
No 180
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.78 E-value=4.2e-08 Score=93.39 Aligned_cols=112 Identities=12% Similarity=0.148 Sum_probs=80.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF- 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~- 244 (351)
++.+..++...++.+|||++||+|.++..++..+. +|+|+|+++.+++.|+++++.. + ..+++++.+|+.+...
T Consensus 222 ~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~-~--~~~~~~~~~d~~~~~~~ 296 (374)
T TIGR02085 222 YATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQML-G--LDNLSFAALDSAKFATA 296 (374)
T ss_pred HHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEECCHHHHHHh
Confidence 34444554434567999999999999999997764 9999999999999999998776 2 3589999999866421
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..++||+|++.=--.. -...+++.+. .++|+++++++.
T Consensus 297 ~~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 297 QMSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred cCCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEe
Confidence 1246999987532111 1134455554 478999888864
No 181
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.78 E-value=4.2e-08 Score=89.99 Aligned_cols=87 Identities=11% Similarity=0.168 Sum_probs=71.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++.+|||||||+|.++..+++.+. +|+++|+++.+++.+++++... +. ..+++++.+|+.+.
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~-~~-~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNS-PL-ASKLEVIEGDALKT 97 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhc-CC-CCcEEEEECCHhhh
Confidence 44556777777777788999999999999999999875 8999999999999999988754 11 36899999999876
Q ss_pred CCCCCceeeEEec
Q 018740 243 PFASSSIDAVHAG 255 (351)
Q Consensus 243 p~~~~~fD~V~~~ 255 (351)
++ ..||.|+++
T Consensus 98 ~~--~~~d~VvaN 108 (294)
T PTZ00338 98 EF--PYFDVCVAN 108 (294)
T ss_pred cc--cccCEEEec
Confidence 64 368988875
No 182
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.78 E-value=3.4e-08 Score=97.45 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=85.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~~fD~V~~ 254 (351)
....+||||||.|.++..++...|+..++|+|++...+..+.+++... +..|+.++..|+..+ -++++++|.|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~---~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ---NITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 456899999999999999999999999999999999888888776654 257888888887533 256788999996
Q ss_pred ccccccCCCh-------------HHHHHHHHhcccCCcEEEEEeec
Q 018740 255 GAAIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 255 ~~vl~h~~d~-------------~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++ ||| ..+|+.++++|+|||.+.+.|-.
T Consensus 424 ~F-----PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 424 LF-----PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred EC-----CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 54 444 48899999999999999987654
No 183
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.73 E-value=2e-07 Score=82.97 Aligned_cols=147 Identities=20% Similarity=0.127 Sum_probs=90.8
Q ss_pred CCCeEEEEcCcc--CHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCC--eEEEEecCCCCC--------
Q 018740 177 LGGNIIDASCGS--GLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN--FLLVRADISRLP-------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~--G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~--i~~~~~d~~~lp-------- 243 (351)
.-...||||||- -..+..+++ ..|.++|+.+|.+|-.+..++..+... ++ ..++++|+.+..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~-----~~g~t~~v~aD~r~p~~iL~~p~~ 142 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN-----PRGRTAYVQADLRDPEAILAHPEV 142 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT------TTSEEEEEE--TT-HHHHHCSHHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-----CCccEEEEeCCCCCHHHHhcCHHH
Confidence 346899999994 234555544 477889999999999999999988765 45 899999997642
Q ss_pred ---CCCCceeeEEeccccccCCC---hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCH
Q 018740 244 ---FASSSIDAVHAGAAIHCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE 317 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d---~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 317 (351)
+.-...=.|++..+|||++| |..+++.++..|.||.+|+++-...+.. ..........+..........+.
T Consensus 143 ~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~---p~~~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 143 RGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA---PERAEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp HCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS---HHHHHHHHHHHHHCCS----B-H
T ss_pred HhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC---HHHHHHHHHHHHcCCCCceecCH
Confidence 11122337888999999965 7799999999999999999998876532 11123344444444556677899
Q ss_pred HHHHHHHHHCCCeEEE
Q 018740 318 REIEDLCRACGLVDFK 333 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v~ 333 (351)
+++..++. ||+.++
T Consensus 220 ~ei~~~f~--g~elve 233 (267)
T PF04672_consen 220 EEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHCCT--TSEE-T
T ss_pred HHHHHHcC--CCccCC
Confidence 99999987 888766
No 184
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.73 E-value=6.1e-08 Score=88.56 Aligned_cols=104 Identities=15% Similarity=0.285 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
...++.|||||||+|.++...++.| ..+|+++|-|. +++.|++.+..+ +. ...++++.+.++++.+|-++.|+|++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~-ia~~a~~iv~~N-~~-~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASS-IADFARKIVKDN-GL-EDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechH-HHHHHHHHHHhc-Cc-cceEEEeecceEEEecCccceeEEee
Confidence 4467899999999999999999999 47999999876 458888887776 22 45699999999987766789999998
Q ss_pred ccccccCC---ChHHHHHHHHhcccCCcEEE
Q 018740 255 GAAIHCWS---SPSTGVAEISRVLRPGGVFV 282 (351)
Q Consensus 255 ~~vl~h~~---d~~~~l~~i~~~LkpgG~li 282 (351)
-+.=+.+- -....|-.=-+.|+|||.++
T Consensus 134 EWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 65533321 12344444458999999875
No 185
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.72 E-value=4e-08 Score=92.13 Aligned_cols=110 Identities=27% Similarity=0.371 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++..++|+|||.|.....+.... ...++|+|.++..+..+....... ++ .....++.+|+.+.|++++.||.+.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~-~l-~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKA-YL-DNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHH-Hh-hhhcceehhhhhcCCCCccccCcEEEE
Confidence 346689999999999999888765 458999999998888877655443 12 233445888999999999999999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.+..|.+++..+++|++|+++|||+++..++..
T Consensus 186 d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 186 EVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred eecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence 999999999999999999999999999977654
No 186
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.68 E-value=1.2e-07 Score=84.54 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=86.8
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF 244 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~ 244 (351)
..+...+...+.++|||||+++|+.+..++... +.++++.+|.++...+.|++.+... |. ..+++++.+++.+. +-
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-g~-~~~I~~~~G~a~e~L~~ 146 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-GV-AHKIDFREGPALPVLDQ 146 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-CC-CCceEEEeccHHHHHHH
Confidence 334444444456799999999999999988763 4679999999999999999999887 44 58899999998552 21
Q ss_pred ------CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 245 ------ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 ------~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..++||+|+.-.-= ......++.+.++|+|||++++-..
T Consensus 147 l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred HHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 13689999964331 1234667888899999999887433
No 187
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.66 E-value=4e-07 Score=80.21 Aligned_cols=133 Identities=16% Similarity=0.092 Sum_probs=79.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeE-EEEecCCCC-----CCCCCce
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRL-----PFASSSI 249 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~-~~~~d~~~l-----p~~~~~f 249 (351)
.++.++||+|||+|.++..+++.+ ..+|+|+|+++.|+....+. .+++. +...|+..+ +..-..+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~--------~~~v~~~~~~ni~~~~~~~~~~d~~~~ 144 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQ--------DERVKVLERTNIRYVTPADIFPDFATF 144 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhc--------CCCeeEeecCCcccCCHhHcCCCceee
Confidence 457799999999999999999986 35899999999888762221 23322 333344322 2122367
Q ss_pred eeEEeccccccCCChHHHHHHHHhcccCCcEEEEE-eeccCCCCCcchHHHHHHHHHhh----ccCCccCCCHHHHHHHH
Q 018740 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT-TYIVDGPFNLIPFSRLLRQNMMQ----ISGSYTFLSEREIEDLC 324 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~l~~ll 324 (351)
|+++++..+ .+..+.+.|+| |.+++. -|-. +.-...... .....+..-.+.+...+
T Consensus 145 DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~KPqF----------E~~~~~~~~~giv~~~~~~~~~~~~~~~~~ 205 (228)
T TIGR00478 145 DVSFISLIS--------ILPELDLLLNP-NDLTLLFKPQF----------EAGREKKNKKGVVRDKEAIALALHKVIDKG 205 (228)
T ss_pred eEEEeehHh--------HHHHHHHHhCc-CeEEEEcChHh----------hhcHhhcCcCCeecCHHHHHHHHHHHHHHH
Confidence 777755443 48889999999 766543 2221 111100000 00011122346677788
Q ss_pred HHCCCeEEEEEe
Q 018740 325 RACGLVDFKCTR 336 (351)
Q Consensus 325 ~~aGf~~v~~~~ 336 (351)
.+.||.+.....
T Consensus 206 ~~~~~~~~~~~~ 217 (228)
T TIGR00478 206 ESPDFQEKKIIF 217 (228)
T ss_pred HcCCCeEeeEEE
Confidence 889998876543
No 188
>PRK04148 hypothetical protein; Provisional
Probab=98.63 E-value=6.2e-07 Score=71.77 Aligned_cols=107 Identities=9% Similarity=0.106 Sum_probs=76.8
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
.+.+.+.+...++.+|||||||.|. ++..|++.|. +|+++|+++..++.++++ .+.++.+|+.+..+
T Consensus 5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCH
Confidence 4556666655566899999999996 8888888876 999999999999888764 46789999987654
Q ss_pred C-CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 245 A-SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 245 ~-~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
. -..+|+|.+..- -++....+.++++.+ |.-+++.....+
T Consensus 73 ~~y~~a~liysirp---p~el~~~~~~la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 73 EIYKNAKLIYSIRP---PRDLQPFILELAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred HHHhcCCEEEEeCC---CHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 3 456899987543 123344455555543 455676665544
No 189
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.63 E-value=6.9e-07 Score=76.82 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=76.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-C-CCC-ceeeE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F-ASS-SIDAV 252 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p-~-~~~-~fD~V 252 (351)
.+.++||++||+|.++..++.++. ..|+++|.++.+++.++++++.. +. ..+++++.+|+.+. . + ... .||+|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~-~~-~~~~~~~~~D~~~~l~~~~~~~~~~dvv 125 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALL-KS-GEQAEVVRNSALRALKFLAKKPTFDNVI 125 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHh-CC-cccEEEEehhHHHHHHHhhccCCCceEE
Confidence 467999999999999999999985 48999999999999999998876 22 24689999998442 2 1 122 47887
Q ss_pred EeccccccCCChHHHHHHHH--hcccCCcEEEEEeec
Q 018740 253 HAGAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYI 287 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~--~~LkpgG~li~~~~~ 287 (351)
+..=-+.. ......++.+. .+|+++|++++....
T Consensus 126 ~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 126 YLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 76433221 22234444443 478899988886543
No 190
>PLN02823 spermine synthase
Probab=98.61 E-value=2.9e-07 Score=85.78 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=81.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CCCCCCeEEEEecCCCC-CCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 254 (351)
.+.+||.||+|.|..++.+.+..+..+++.+|+++.+++.|++.+.... +...++++++.+|.... ....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 3568999999999999999887555689999999999999999875431 12258999999998653 334578999997
Q ss_pred ccccccCC-C------hHHHHH-HHHhcccCCcEEEEE
Q 018740 255 GAAIHCWS-S------PSTGVA-EISRVLRPGGVFVGT 284 (351)
Q Consensus 255 ~~vl~h~~-d------~~~~l~-~i~~~LkpgG~li~~ 284 (351)
-.. .... . -..+++ .+.+.|+|||++++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 521 2110 1 135677 899999999998774
No 191
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.61 E-value=4.3e-07 Score=82.40 Aligned_cols=108 Identities=13% Similarity=0.153 Sum_probs=86.1
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC-CCCeEEEEecCCCC-CCCCCceee
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRL-PFASSSIDA 251 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~-~~~i~~~~~d~~~l-p~~~~~fD~ 251 (351)
.+.+ ++||-||.|.|..++.+.+..+..+++.+|+++..++.+++.+....+.. .++++++..|..+. .-...+||+
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 3444 69999999999999999999877899999999999999999987763122 48999999998664 222347999
Q ss_pred EEeccccccCCCh------HHHHHHHHhcccCCcEEEEE
Q 018740 252 VHAGAAIHCWSSP------STGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 252 V~~~~vl~h~~d~------~~~l~~i~~~LkpgG~li~~ 284 (351)
|++...=. . .| ..+++.+++.|+++|+++..
T Consensus 153 Ii~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99754311 1 22 68899999999999999986
No 192
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.59 E-value=4e-07 Score=81.26 Aligned_cols=146 Identities=15% Similarity=0.193 Sum_probs=90.8
Q ss_pred CCCeEEEEcCccCHHHH-HHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC---------------CCCC----------C
Q 018740 177 LGGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPK----------E 230 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~-~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------------g~~~----------~ 230 (351)
++.++||||||.-..-. .+.+.. .+++..|.++.-.+..++.+.... |... .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 46799999999854322 222333 389999999988887777665431 1100 0
Q ss_pred Ce-EEEEecCCCCC-CCC-----CceeeEEeccccccCC-ChH---HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHH
Q 018740 231 NF-LLVRADISRLP-FAS-----SSIDAVHAGAAIHCWS-SPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR 299 (351)
Q Consensus 231 ~i-~~~~~d~~~lp-~~~-----~~fD~V~~~~vl~h~~-d~~---~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~ 299 (351)
.| .++.+|+.+.+ +.. .+||+|++...|+... |+. .+++++.++|||||.|++...........
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~v----- 208 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMV----- 208 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEE-----
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEE-----
Confidence 12 36778887643 322 2599999999998764 554 78999999999999999977653321000
Q ss_pred HHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 300 LLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 300 ~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
....-.....+++.+++.|+++||.+++..
T Consensus 209 ------G~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 209 ------GGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ------TTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ------CCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 000002235689999999999999988755
No 193
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.58 E-value=4.1e-07 Score=78.51 Aligned_cols=105 Identities=20% Similarity=0.260 Sum_probs=75.6
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
++...+. ++..|||+-||.|.++..+++.+....|+++|++|.+++..++++..+ +. ...+..+.+|...+.. .+
T Consensus 94 Ri~~~v~--~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN-kv-~~~i~~~~~D~~~~~~-~~ 168 (200)
T PF02475_consen 94 RIANLVK--PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN-KV-ENRIEVINGDAREFLP-EG 168 (200)
T ss_dssp HHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT-T--TTTEEEEES-GGG----TT
T ss_pred HHHhcCC--cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc-CC-CCeEEEEcCCHHHhcC-cc
Confidence 4555543 478999999999999999999655669999999999999999999887 33 4668999999988764 78
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEE
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 281 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~l 281 (351)
.+|-|++... ..-..+|..+.+++++||++
T Consensus 169 ~~drvim~lp----~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 169 KFDRVIMNLP----ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp -EEEEEE--T----SSGGGGHHHHHHHEEEEEEE
T ss_pred ccCEEEECCh----HHHHHHHHHHHHHhcCCcEE
Confidence 8999997543 22345788899999999876
No 194
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.5e-07 Score=74.92 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=71.4
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+.+-.+...++.++|+|||.|-++....-.. ...|+|+|+++++++.+++++.+. ..+++++++|+.++-+..
T Consensus 38 ~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEf----EvqidlLqcdildle~~~ 112 (185)
T KOG3420|consen 38 YTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEF----EVQIDLLQCDILDLELKG 112 (185)
T ss_pred HHHHhhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHh----hhhhheeeeeccchhccC
Confidence 344444555678899999999999996555444 458999999999999999998887 577899999999988778
Q ss_pred CceeeEEecccc
Q 018740 247 SSIDAVHAGAAI 258 (351)
Q Consensus 247 ~~fD~V~~~~vl 258 (351)
+.||.++.+--+
T Consensus 113 g~fDtaviNppF 124 (185)
T KOG3420|consen 113 GIFDTAVINPPF 124 (185)
T ss_pred CeEeeEEecCCC
Confidence 999999987654
No 195
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=5.8e-07 Score=80.03 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=73.8
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.....++..|||||+|.|.++..|++.+. .|+++|+++.+++..++.+.. ..+++++.+|+...
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~ 88 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcC
Confidence 44567788888888888999999999999999999987 899999999999999998653 48999999999998
Q ss_pred CCCCC-ceeeEEec
Q 018740 243 PFASS-SIDAVHAG 255 (351)
Q Consensus 243 p~~~~-~fD~V~~~ 255 (351)
+++.- .++.|+++
T Consensus 89 d~~~l~~~~~vVaN 102 (259)
T COG0030 89 DFPSLAQPYKVVAN 102 (259)
T ss_pred cchhhcCCCEEEEc
Confidence 87653 57777765
No 196
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.55 E-value=4.4e-07 Score=85.69 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=76.1
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.+.+.+.+++...+ .+|||++||+|.++..+++... +|+|+|+++.+++.|++++..+ + ..++.++.+|+.++-
T Consensus 185 ~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~-~--~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 185 KMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAAN-N--IDNVQIIRMSAEEFT 258 (353)
T ss_pred HHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEEcCHHHHH
Confidence 34455556554322 4799999999999999998865 9999999999999999998876 2 357999999986631
Q ss_pred CC----------C------CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 FA----------S------SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ~~----------~------~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.. . ..||+|+..=- . -.-...+++.+. +|+++++++..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP-R-~G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPP-R-AGLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred HHHhhccccccccccccccCCCCEEEECCC-C-CCCcHHHHHHHH---cCCcEEEEEcC
Confidence 10 1 13798885211 0 000124444443 47888888643
No 197
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.55 E-value=1.2e-06 Score=78.91 Aligned_cols=107 Identities=12% Similarity=0.153 Sum_probs=78.8
Q ss_pred CCeEEEEcCccCH----HHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHhh---h-C-------------CCC---
Q 018740 178 GGNIIDASCGSGL----FSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQ---E-S-------------NFP--- 228 (351)
Q Consensus 178 ~~~vLDiGcG~G~----~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~~---~-~-------------g~~--- 228 (351)
.-+|+-+||++|. ++..+.+.+ ...+|+|.|+|..+++.|+.-.=. . + +..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5699999999996 333333444 257899999999999999862210 0 0 000
Q ss_pred ------CCCeEEEEecCCCCCCCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEE
Q 018740 229 ------KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 229 ------~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~ 284 (351)
...|.|...|+..-++..+.||+|+|-+|+-++..+ .+++..++..|+|||+|++-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 124677777776655456779999999999999755 48899999999999999984
No 198
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=2.9e-06 Score=74.77 Aligned_cols=111 Identities=17% Similarity=0.291 Sum_probs=93.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
..++...|...||.+|+|-|.|+|.++.++++. +|.++++-+|+.+...+.|++.+.+. |. .+++.+..-|+....|
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-gi-~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-GI-GDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-CC-CcceEEEEeecccCCc
Confidence 457888889999999999999999999999987 67779999999999999999998887 44 7899999999977654
Q ss_pred C--CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEE
Q 018740 245 A--SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 245 ~--~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~ 283 (351)
. +..+|+|+ -.++.|..++-.++.+||.+|.-++
T Consensus 172 ~~ks~~aDaVF-----LDlPaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 172 LIKSLKADAVF-----LDLPAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cccccccceEE-----EcCCChhhhhhhhHHHhhhcCceEE
Confidence 3 56788887 3578899999999999999875433
No 199
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.54 E-value=4.1e-07 Score=84.60 Aligned_cols=130 Identities=16% Similarity=0.185 Sum_probs=89.4
Q ss_pred CCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCC
Q 018740 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-------GLFSLVVALDYSENMLKQCYEFVQQESNFPK 229 (351)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~ 229 (351)
+.++.|....+.+...+...++.+|+|..||+|.++..+.+. .....++|+|+++.++..|+-++.-. |...
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~-~~~~ 104 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH-GIDN 104 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT-THHC
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh-cccc
Confidence 457788999999999998888889999999999999888763 24568999999999999998776543 2223
Q ss_pred CCeEEEEecCCCCCCC--CCceeeEEeccccccC--------CC-------------hHHHHHHHHhcccCCcEEEEEee
Q 018740 230 ENFLLVRADISRLPFA--SSSIDAVHAGAAIHCW--------SS-------------PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 230 ~~i~~~~~d~~~lp~~--~~~fD~V~~~~vl~h~--------~d-------------~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+..+..+|....+.. ...||+|+++--+--. .+ ...++..+.+.|++||++.+..|
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 4456788887554432 4789999986322110 01 12678999999999999988877
Q ss_pred c
Q 018740 287 I 287 (351)
Q Consensus 287 ~ 287 (351)
.
T Consensus 185 ~ 185 (311)
T PF02384_consen 185 N 185 (311)
T ss_dssp H
T ss_pred c
Confidence 5
No 200
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.54 E-value=1.3e-06 Score=85.03 Aligned_cols=117 Identities=17% Similarity=0.146 Sum_probs=89.2
Q ss_pred HHhcc--CCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-C
Q 018740 169 MKGYL--KPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F 244 (351)
Q Consensus 169 l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~ 244 (351)
....+ .+.++.+|||+++|.|.-+..++... ....+++.|+++.-++..++++... | ..++.+...|...++ .
T Consensus 103 ~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~-G--~~nv~v~~~D~~~~~~~ 179 (470)
T PRK11933 103 PVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC-G--VSNVALTHFDGRVFGAA 179 (470)
T ss_pred HHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCeEEEEeCchhhhhhh
Confidence 34444 66788999999999999888888764 2458999999999999999999887 3 467888888887653 2
Q ss_pred CCCceeeEE----ec--cccccCCC----------------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 245 ASSSIDAVH----AG--AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 245 ~~~~fD~V~----~~--~vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
..+.||.|+ |+ +++..-++ ...+|..+.+.|||||+|+.+|-..
T Consensus 180 ~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 180 LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 245799999 44 23332221 1477899999999999998887653
No 201
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.52 E-value=4.8e-07 Score=85.49 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=86.7
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC----CCCCCceeeEE
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSIDAVH 253 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~~fD~V~ 253 (351)
|++|||+=|=||.++...+..|. .+|++||.|...++.|++++..+ |....++.++++|+.+. .-...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LN-g~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELN-GLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhc-CCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 88999999999999999998874 59999999999999999999998 66667899999998664 22345899999
Q ss_pred ecc---------ccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 254 AGA---------AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~---------vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+-= ...-..+-..++..+.++|+|||.+++.+..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 631 1111123347788999999999999987654
No 202
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.52 E-value=5.3e-07 Score=85.49 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=77.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+.+++.+.+++... +.+|||++||+|.++..+++... +|+|+|+++.+++.+++++..+ + ..++.++.+|+.+.
T Consensus 193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~-~--~~~v~~~~~d~~~~ 266 (362)
T PRK05031 193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAAN-G--IDNVQIIRMSAEEF 266 (362)
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHh-C--CCcEEEEECCHHHH
Confidence 34455666655432 35799999999999999988765 9999999999999999998776 2 35899999998653
Q ss_pred -C-CC--------------CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 243 -P-FA--------------SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 243 -p-~~--------------~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+ +. ...||+|+..=- . -.-...+++.+. +|+++++++..
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~---~~~~ivyvSC~ 321 (362)
T PRK05031 267 TQAMNGVREFNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQ---AYERILYISCN 321 (362)
T ss_pred HHHHhhcccccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHH---ccCCEEEEEeC
Confidence 1 10 125899985211 0 000123444443 37888877543
No 203
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.50 E-value=2.6e-06 Score=72.59 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=79.3
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccc
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~ 259 (351)
+++|||+|.|.-+..++=..|..+++.+|....-+...+.-.... +..|+++++..+++ +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L---~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL---GLSNVEVINGRAEE-PEYRESFDVVTARAV-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH---T-SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh---CCCCEEEEEeeecc-cccCCCccEEEeehh--
Confidence 899999999999988888888889999999988777777766655 25789999999988 445788999998766
Q ss_pred cCCChHHHHHHHHhcccCCcEEEEE
Q 018740 260 CWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 260 h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
.....+++-+...|++||.+++.
T Consensus 125 --~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 --APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCCEEEEE
Confidence 56778889999999999998874
No 204
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.46 E-value=1.3e-06 Score=78.86 Aligned_cols=104 Identities=17% Similarity=0.262 Sum_probs=78.8
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
.-.++.|||+|||+|.++...++.|. .+|++++-|+ |.++|++.++.+ ...++|.++.+.++++.+| ++.|+|++
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N--~~~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASN--NLADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcC--CccceEEEccCccccccCc-hhccEEEe
Confidence 44678999999999999999999984 6899999765 999999988776 3378999999999998765 56999997
Q ss_pred ccccccCCChH--HHHHHHHhcccCCcEEEE
Q 018740 255 GAAIHCWSSPS--TGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 255 ~~vl~h~~d~~--~~l~~i~~~LkpgG~li~ 283 (351)
--.=.-+-+.. ...-..++.|+|.|.++=
T Consensus 250 EPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred ccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 43211111211 223345699999998764
No 205
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.46 E-value=4e-06 Score=68.41 Aligned_cols=104 Identities=31% Similarity=0.486 Sum_probs=76.1
Q ss_pred EEEEcCccCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhhCCCCCCC-eEEEEecCCC--CCCCC-CceeeEEec
Q 018740 181 IIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISR--LPFAS-SSIDAVHAG 255 (351)
Q Consensus 181 vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~-i~~~~~d~~~--lp~~~-~~fD~V~~~ 255 (351)
++|+|||+|... .+...... ..++|+|+++.++..++...... ... +.+...|... +++.. ..||++ ..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA----GLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc----CCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 999999999976 33333222 37899999999999855443211 111 6788888876 77776 489999 55
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeeccCC
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 290 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~ 290 (351)
....|..++...+.++.+.|+|+|.+++.......
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 55444444889999999999999999998877543
No 206
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.44 E-value=8.5e-06 Score=70.72 Aligned_cols=134 Identities=12% Similarity=0.110 Sum_probs=90.4
Q ss_pred EEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC-CCCCCCCCceeeEEeccccc
Q 018740 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFASSSIDAVHAGAAIH 259 (351)
Q Consensus 181 vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~-~~lp~~~~~fD~V~~~~vl~ 259 (351)
|.||||-.|++...|.+.+.-.+++++|+++..++.|++.+... |. ..++++..+|- ..++ +.+..|.|+..++=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~-~l-~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY-GL-EDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-T--TTTEEEEE-SGGGG---GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-CC-cccEEEEECCcccccC-CCCCCCEEEEecCCH
Confidence 68999999999999999987778999999999999999999887 33 57899999995 4444 223378888766522
Q ss_pred cCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEE---EEe
Q 018740 260 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK---CTR 336 (351)
Q Consensus 260 h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~---~~~ 336 (351)
. -....|++....++....|++.... ....++++|.+.||.+++ +..
T Consensus 78 ~--lI~~ILe~~~~~~~~~~~lILqP~~----------------------------~~~~LR~~L~~~gf~I~~E~lv~e 127 (205)
T PF04816_consen 78 E--LIIEILEAGPEKLSSAKRLILQPNT----------------------------HAYELRRWLYENGFEIIDEDLVEE 127 (205)
T ss_dssp H--HHHHHHHHTGGGGTT--EEEEEESS-----------------------------HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred H--HHHHHHHhhHHHhccCCeEEEeCCC----------------------------ChHHHHHHHHHCCCEEEEeEEEeE
Confidence 1 1235666666666665566663221 456899999999999888 344
Q ss_pred cCe-EEEEEEec
Q 018740 337 NRG-FVMFTATK 347 (351)
Q Consensus 337 ~g~-~~~~~a~k 347 (351)
.+. +.++.+.+
T Consensus 128 ~~~~YeIi~~~~ 139 (205)
T PF04816_consen 128 NGRFYEIIVAER 139 (205)
T ss_dssp TTEEEEEEEEEE
T ss_pred CCEEEEEEEEEe
Confidence 454 44444443
No 207
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.43 E-value=3e-06 Score=77.23 Aligned_cols=117 Identities=19% Similarity=0.132 Sum_probs=76.0
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC-CCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS-RLP 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~-~lp 243 (351)
+..+...+..-.+.+|||+|||.|..+.++.+..+ ..+++++|.|+.|++.++..+....+ ............ ..+
T Consensus 22 l~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 22 LSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--NRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--cccchhhhhhhccccc
Confidence 44555555555667999999999988777766532 34899999999999999987655411 111111111111 122
Q ss_pred CCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeecc
Q 018740 244 FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+ ...|+|++.++|..+++. ..+++.+.+.+.+ .|+++++..
T Consensus 100 ~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 100 F--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred C--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 2 234999999999988872 2555666555555 888888764
No 208
>PRK00536 speE spermidine synthase; Provisional
Probab=98.42 E-value=2.4e-06 Score=76.75 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=77.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.+++||=||.|.|..++.+.+.-. +|+-+|+++.+++.+++.+... ++...++++++.. +.+. ..++||+|+.-
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~--~~~~fDVIIvD 146 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL--DIKKYDLIICL 146 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc--cCCcCCEEEEc
Confidence 367999999999999999999843 9999999999999999966543 1334678888762 2221 23689999975
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.. .+..+.+.+++.|+|||+++...
T Consensus 147 s~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC-----CChHHHHHHHHhcCCCcEEEECC
Confidence 32 44678899999999999999853
No 209
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.41 E-value=1.3e-07 Score=79.86 Aligned_cols=94 Identities=17% Similarity=0.111 Sum_probs=73.7
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+.++||+|.|.|..+..++.... +|++.+.|..|....+++ .-++ + ...+..-.+-+||+|.|.++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk--------~ynV--l--~~~ew~~t~~k~dli~clNl 178 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK--------NYNV--L--TEIEWLQTDVKLDLILCLNL 178 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc--------CCce--e--eehhhhhcCceeehHHHHHH
Confidence 46899999999999999988765 899999999998888764 1222 1 11111112346999999999
Q ss_pred cccCCChHHHHHHHHhcccC-CcEEEEEe
Q 018740 258 IHCWSSPSTGVAEISRVLRP-GGVFVGTT 285 (351)
Q Consensus 258 l~h~~d~~~~l~~i~~~Lkp-gG~li~~~ 285 (351)
|..-.+|-++|+.+..+|+| +|.+++.-
T Consensus 179 LDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 179 LDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 99888999999999999999 88877644
No 210
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.40 E-value=2e-06 Score=78.21 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=78.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C--CCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p--~~~~~fD~V~ 253 (351)
.+++|||+=|=||.++...+..|. .+|+.||.|..+++.+++++..+ |....++++++.|+.+. . -..++||+|+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lN-g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALN-GLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHT-T-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 367999999999999999887763 57999999999999999999988 55557899999998652 1 1246899999
Q ss_pred ecc---c---cccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 254 AGA---A---IHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~---v---l~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+-- . ..-..+-..++..+.++|+|||.+++.+..
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 631 1 000113347788899999999998876553
No 211
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.39 E-value=1e-06 Score=75.25 Aligned_cols=122 Identities=14% Similarity=0.195 Sum_probs=84.3
Q ss_pred HHHHHHHHhccCC--CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 163 EKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 163 ~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
++..+.+-..+.. -.+.++||+-||+|.++.....+|. .+|+.+|.++..++..+++++.. +. ..++..+..|+.
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l-~~-~~~~~v~~~d~~ 102 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKL-GL-EDKIRVIKGDAF 102 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHH-T--GGGEEEEESSHH
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHh-CC-CcceeeeccCHH
Confidence 3444444444443 3678999999999999999999984 59999999999999999999876 22 235888888854
Q ss_pred C-CC---CCCCceeeEEeccccccCCC-hHHHHHHHH--hcccCCcEEEEEeecc
Q 018740 241 R-LP---FASSSIDAVHAGAAIHCWSS-PSTGVAEIS--RVLRPGGVFVGTTYIV 288 (351)
Q Consensus 241 ~-lp---~~~~~fD~V~~~~vl~h~~d-~~~~l~~i~--~~LkpgG~li~~~~~~ 288 (351)
. ++ .....||+|++.=-... .. ...+++.+. .+|+++|++++.....
T Consensus 103 ~~l~~~~~~~~~fDiIflDPPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 103 KFLLKLAKKGEKFDIIFLDPPYAK-GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHHCTS-EEEEEE--STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHhhcccCCCceEEEECCCccc-chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 3 21 24678999997533222 22 256677776 7999999999987654
No 212
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.37 E-value=1.4e-06 Score=78.00 Aligned_cols=111 Identities=12% Similarity=0.092 Sum_probs=81.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CCCCCCeEEEEecCCCC-CCCCC-ceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASS-SIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~~~~~i~~~~~d~~~l-p~~~~-~fD~V~ 253 (351)
.+.+||-||.|.|..++.+.+..+..+++.+|+++.+++.|++.+.... +...++++++.+|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4679999999999999999987656799999999999999999876531 12357999999998543 22233 899999
Q ss_pred eccccccCCC----hHHHHHHHHhcccCCcEEEEEeec
Q 018740 254 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~vl~h~~d----~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.-..-...+. -..+++.+++.|+|||++++....
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 7433211111 248899999999999999987643
No 213
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.37 E-value=1.5e-05 Score=73.76 Aligned_cols=105 Identities=15% Similarity=0.068 Sum_probs=77.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHh-hhCCCCCCCeEE--EEecCCCC----CC-
Q 018740 177 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQ-QESNFPKENFLL--VRADISRL----PF- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~-~~~g~~~~~i~~--~~~d~~~l----p~- 244 (351)
++..|+|+|||+|.-+..|.+. +....++++|+|..+++.+.+++. .. .+.+.+ +++|+.+. +-
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~----~p~l~v~~l~gdy~~~l~~l~~~ 151 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN----FSHVRCAGLLGTYDDGLAWLKRP 151 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc----CCCeEEEEEEecHHHHHhhcccc
Confidence 3568999999999876655543 334589999999999999999988 43 455555 88888552 21
Q ss_pred -CCCceeeEEec-cccccCCChH--HHHHHHHh-cccCCcEEEEEe
Q 018740 245 -ASSSIDAVHAG-AAIHCWSSPS--TGVAEISR-VLRPGGVFVGTT 285 (351)
Q Consensus 245 -~~~~fD~V~~~-~vl~h~~d~~--~~l~~i~~-~LkpgG~li~~~ 285 (351)
......+++.. .+|..++..+ .+|+++++ .|+|||.+++..
T Consensus 152 ~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 152 ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 12335666655 4788876554 88999999 999999988854
No 214
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.36 E-value=1.5e-06 Score=79.42 Aligned_cols=95 Identities=17% Similarity=0.217 Sum_probs=73.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp- 243 (351)
.+.+.+.+.+.+++.+||.+||.|..+..+++..+ ..+|+|+|.++.+++.+++++.. ..++.++.+|+.++.
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKE 82 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHH
Confidence 45667777777788999999999999999999864 57999999999999999987643 258999999998753
Q ss_pred -CCCC--ceeeEEecccc--ccCCChH
Q 018740 244 -FASS--SIDAVHAGAAI--HCWSSPS 265 (351)
Q Consensus 244 -~~~~--~fD~V~~~~vl--~h~~d~~ 265 (351)
.+.+ ++|.|++.... +++.++.
T Consensus 83 ~l~~~~~~vDgIl~DLGvSs~Qld~~~ 109 (296)
T PRK00050 83 VLAEGLGKVDGILLDLGVSSPQLDDAE 109 (296)
T ss_pred HHHcCCCccCEEEECCCccccccCCCc
Confidence 1122 79999986433 3444543
No 215
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.36 E-value=3.2e-06 Score=74.51 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=71.0
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
..+.+.......++..|||+|.|||.++..+.+.+. +|+++|+++.|+....++.+... ......++.+|+...++
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp--~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTP--KSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCC--ccceeeEEecccccCCC
Confidence 356677777778899999999999999999999987 99999999999999999876540 13578999999988764
Q ss_pred CCCceeeEEec
Q 018740 245 ASSSIDAVHAG 255 (351)
Q Consensus 245 ~~~~fD~V~~~ 255 (351)
..||.++++
T Consensus 122 --P~fd~cVsN 130 (315)
T KOG0820|consen 122 --PRFDGCVSN 130 (315)
T ss_pred --cccceeecc
Confidence 369999974
No 216
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=1.9e-06 Score=83.00 Aligned_cols=110 Identities=21% Similarity=0.278 Sum_probs=87.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+.+.+.+.+++...++.++||+=||.|.++..+++... +|+|+|+++.+++.|+++++.+ +..|+.|..++++++
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n---~i~N~~f~~~~ae~~ 353 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAAN---GIDNVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHc---CCCcEEEEeCCHHHH
Confidence 45667777888887888999999999999999998866 9999999999999999999988 357799999999886
Q ss_pred CCC---CCceeeEEeccccccCCChH------HHHHHHHhcccCCcEEEEEee
Q 018740 243 PFA---SSSIDAVHAGAAIHCWSSPS------TGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 243 p~~---~~~fD~V~~~~vl~h~~d~~------~~l~~i~~~LkpgG~li~~~~ 286 (351)
... ...+|+|+. ||. .+++.+ ..++|..+++++..
T Consensus 354 ~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~l-~~~~p~~IvYVSCN 397 (432)
T COG2265 354 TPAWWEGYKPDVVVV--------DPPRAGADREVLKQL-AKLKPKRIVYVSCN 397 (432)
T ss_pred hhhccccCCCCEEEE--------CCCCCCCCHHHHHHH-HhcCCCcEEEEeCC
Confidence 533 347899994 542 344443 44678888888643
No 217
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.31 E-value=1.8e-06 Score=74.85 Aligned_cols=117 Identities=16% Similarity=0.127 Sum_probs=70.4
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh------CCCCCCCeEEEEecCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SNFPKENFLLVRADIS 240 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~g~~~~~i~~~~~d~~ 240 (351)
..+.+.++..++...+|+|||.|......+....-.+.+|+|+.+...+.|+...... .|....++++..+|+.
T Consensus 32 ~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 32 SKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred HHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 3455566777789999999999998877766544446999999999888877543321 1344567888899987
Q ss_pred CCCCCC---CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 241 RLPFAS---SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 241 ~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
+.++.. ...|+|++++..- -++....|.++...||+|-+++-.
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred ccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEEC
Confidence 644211 3479999987642 123456678888889998877643
No 218
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.28 E-value=9e-06 Score=75.38 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=93.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
..+++..... |.+|||+=+|.|.++..+++.+.. .|+++|++|.+++..++++..+ +. ...+..+.+|....+..
T Consensus 179 R~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN-~v-~~~v~~i~gD~rev~~~ 253 (341)
T COG2520 179 RARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLN-KV-EGRVEPILGDAREVAPE 253 (341)
T ss_pred HHHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhc-Cc-cceeeEEeccHHHhhhc
Confidence 3455555554 889999999999999999999863 3999999999999999999887 22 34488999999888755
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.+.+|-|++... .+...++..+.+.+++||++-..+...+
T Consensus 254 ~~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 254 LGVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred cccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 588999998654 3456778888999999999988776654
No 219
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=1.7e-05 Score=68.06 Aligned_cols=101 Identities=23% Similarity=0.281 Sum_probs=73.2
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--------CC
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FA 245 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--------~~ 245 (351)
..++..|+|+|+..|.+++.+++.. +...|+|+|+.|-- ..+++.++++|+..-+ +.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 3457899999999999999998874 34459999997731 2577999999997643 33
Q ss_pred CCceeeEEecccc--------ccCCCh---HHHHHHHHhcccCCcEEEEEeeccC
Q 018740 246 SSSIDAVHAGAAI--------HCWSSP---STGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 246 ~~~fD~V~~~~vl--------~h~~d~---~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
...+|+|++-.+- +|.... ..++.-+..+|+|||.+++-.+..+
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 4557999965432 222111 2556666789999999999877654
No 220
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.24 E-value=5.1e-05 Score=65.95 Aligned_cols=127 Identities=17% Similarity=0.079 Sum_probs=93.3
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+.+++|||+|.|.=+..++-..|+.+|+-+|....-+...+.-..+- +..|++++++.++++.-....||+|++-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL---~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL---GLENVEIVHGRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh---CCCCeEEehhhHhhcccccccCcEEEeehc
Confidence 57999999999999988887778889999999987777776665554 357899999999987632112999998665
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 258 l~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
.+...++.-....+++||.+++.-.. ... + -..+.+......|+.+.++.
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~~k~~------------~~~----~--------e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLAYKGL------------AGK----D--------ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchhhhHH------------hhh----h--------hHHHHHHHHHhhcCcEEEEE
Confidence 45566677778899999987652110 000 0 22467778888888887744
No 221
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.20 E-value=2.7e-05 Score=72.79 Aligned_cols=138 Identities=16% Similarity=0.070 Sum_probs=95.1
Q ss_pred hhhhhhhhhhhcCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC-----------------------
Q 018740 145 IYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF----------------------- 201 (351)
Q Consensus 145 ~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----------------------- 201 (351)
+..++||..-..+ +--+.++..+....+..++..++|--||+|.++...+..+.+
T Consensus 161 LhkRGyR~~~g~A--pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~ 238 (381)
T COG0116 161 LHKRGYRVYDGPA--PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD 238 (381)
T ss_pred hhhccccccCCCC--CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHH
Confidence 3456666543222 112344555666666666779999999999999988877631
Q ss_pred ---------C-------eEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecccc-ccCCCh
Q 018740 202 ---------S-------LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI-HCWSSP 264 (351)
Q Consensus 202 ---------~-------~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl-~h~~d~ 264 (351)
. .++|+|+++.+++.|+.++... |. .+.|+|.++|+..++-+-+.+|+|+|+--. +-+.+.
T Consensus 239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~A-Gv-~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~ 316 (381)
T COG0116 239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAA-GV-GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE 316 (381)
T ss_pred HHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhc-CC-CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh
Confidence 1 2779999999999999999887 44 677999999999987544789999997432 223332
Q ss_pred ---H----HHHHHHHhcccCCcEEEEEee
Q 018740 265 ---S----TGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 265 ---~----~~l~~i~~~LkpgG~li~~~~ 286 (351)
. .+.+.+++.++--+.+++++.
T Consensus 317 ~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 317 ALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 2 334455566666667776544
No 222
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.20 E-value=3.4e-05 Score=65.23 Aligned_cols=123 Identities=18% Similarity=0.193 Sum_probs=89.4
Q ss_pred cHHHHHHHHhccCC--CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC
Q 018740 162 PEKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239 (351)
Q Consensus 162 ~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~ 239 (351)
.++..+.+-+.+.+ ..+.++||+=+|+|.++.....+|. ..++.+|.+...+...+++++.. +. ..+..++..|+
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l-~~-~~~~~~~~~da 102 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKAL-GL-EGEARVLRNDA 102 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHh-CC-ccceEEEeecH
Confidence 34555666666665 5688999999999999999999984 58999999999999999998876 11 36788888888
Q ss_pred CCC-CCCCC--ceeeEEeccccc-cCCChHHHHHH--HHhcccCCcEEEEEeec
Q 018740 240 SRL-PFASS--SIDAVHAGAAIH-CWSSPSTGVAE--ISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 240 ~~l-p~~~~--~fD~V~~~~vl~-h~~d~~~~l~~--i~~~LkpgG~li~~~~~ 287 (351)
... +-... .||+|+.-=-++ -+.++...+.. -...|+|+|.+++....
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 743 11222 499999754443 12222333333 45779999999997654
No 223
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.19 E-value=1.5e-05 Score=79.55 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=65.3
Q ss_pred CCCCCcHHHHHHHHhccCCC-------CCCeEEEEcCccCHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHH
Q 018740 157 GGFPGPEKEFELMKGYLKPV-------LGGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFV 221 (351)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~-------~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~~~~a~~~~ 221 (351)
+.|+.|....+.+...+... ...+|||.|||+|.++..+.+..+ ...++|+|+++.++..++.++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 34566677777776655221 345899999999999988877542 257899999999999999987
Q ss_pred hhhCCCCCCCeEEEEecCCCC-----CCCCCceeeEEec
Q 018740 222 QQESNFPKENFLLVRADISRL-----PFASSSIDAVHAG 255 (351)
Q Consensus 222 ~~~~g~~~~~i~~~~~d~~~l-----p~~~~~fD~V~~~ 255 (351)
... + ...+.+...|.... .-..+.||+|+.+
T Consensus 84 ~~~-~--~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgN 119 (524)
T TIGR02987 84 GEF-A--LLEINVINFNSLSYVLLNIESYLDLFDIVITN 119 (524)
T ss_pred hhc-C--CCCceeeecccccccccccccccCcccEEEeC
Confidence 665 1 12344455553221 1112579999987
No 224
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=2.4e-05 Score=67.64 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=87.2
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-C-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L- 242 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-l- 242 (351)
...+...++...+++.||||.=||+.+..++...| .++|+++|++++..+.+.+..+.. |. ...+.++++++.+ +
T Consensus 62 g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a-gv-~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 62 GQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA-GV-DHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc-cc-cceeeeeecchhhhHH
Confidence 34445555555577999999999998888887744 579999999999999998877765 33 5789999998754 2
Q ss_pred ----CCCCCceeeEEeccccccCCC-hHHHHHHHHhcccCCcEEEEEe
Q 018740 243 ----PFASSSIDAVHAGAAIHCWSS-PSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 243 ----p~~~~~fD~V~~~~vl~h~~d-~~~~l~~i~~~LkpgG~li~~~ 285 (351)
....++||.++. .|+.+ -...++++.++||+||++++.-
T Consensus 140 ~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 134688999994 55432 3477899999999999999854
No 225
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.18 E-value=1.1e-05 Score=77.06 Aligned_cols=102 Identities=25% Similarity=0.422 Sum_probs=88.2
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccc
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~ 259 (351)
++|-+|||.-.+...+.+.|. ..++-+|+|+-.++....+.... .+...+...|+..+.|++++||+|+.-+.++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF-EDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC-CCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCccc
Confidence 899999999999999988874 58999999999998888765433 6789999999999999999999999999998
Q ss_pred cCCCh----------HHHHHHHHhcccCCcEEEEEee
Q 018740 260 CWSSP----------STGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 260 h~~d~----------~~~l~~i~~~LkpgG~li~~~~ 286 (351)
++-.. ...+.++.|+|++||+++..+.
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 87422 2557899999999999888777
No 226
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.15 E-value=2.8e-05 Score=79.98 Aligned_cols=123 Identities=15% Similarity=0.043 Sum_probs=85.1
Q ss_pred HHHHHHHHhccCC-CCCCeEEEEcCccCHHHHHHHHhC------------------------------------------
Q 018740 163 EKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSG------------------------------------------ 199 (351)
Q Consensus 163 ~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~------------------------------------------ 199 (351)
+.++..++..... .++..++|.+||+|.++...+...
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 4445555555443 457799999999999998876521
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC--CCceeeEEecccc-ccCCC---hHHHHHHHHh
Q 018740 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAAI-HCWSS---PSTGVAEISR 273 (351)
Q Consensus 200 ~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~vl-~h~~d---~~~~l~~i~~ 273 (351)
...+++|+|+++.+++.|++++... |. ...+.+.++|+.+++.+ .++||+|+++--. +.+.+ ...+.+++.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~-g~-~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRA-GV-AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGR 332 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHc-CC-CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHH
Confidence 0126999999999999999999887 33 34689999999887644 3579999998433 22222 2234344444
Q ss_pred cc---cCCcEEEEEeec
Q 018740 274 VL---RPGGVFVGTTYI 287 (351)
Q Consensus 274 ~L---kpgG~li~~~~~ 287 (351)
.| .+|+.+++.+..
T Consensus 333 ~lk~~~~g~~~~llt~~ 349 (702)
T PRK11783 333 RLKQQFGGWNAALFSSS 349 (702)
T ss_pred HHHHhCCCCeEEEEeCC
Confidence 44 488888887764
No 227
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=4.1e-05 Score=72.32 Aligned_cols=121 Identities=25% Similarity=0.274 Sum_probs=92.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.......+.+.++.+|||+.++.|.=+..+++...+ ..|+++|.++.-++..+++++.. +..++.....|...++
T Consensus 145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl---G~~nv~~~~~d~~~~~ 221 (355)
T COG0144 145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL---GVRNVIVVNKDARRLA 221 (355)
T ss_pred HHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc---CCCceEEEeccccccc
Confidence 345556788899999999999999988888887653 35799999999999999999887 3566788888876554
Q ss_pred ---CCCCceeeEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 ---FASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 ---~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
...+.||.|+.- +++..=|+ ...+|..+.+.|||||.|+.+|-...
T Consensus 222 ~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 222 ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 222359999942 44432222 23789999999999999999887653
No 228
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.13 E-value=1.3e-05 Score=72.60 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=76.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++..|||||+|.|.++..+.+.+. +++++|+++.+.+..++++.. .++++++.+|+..+
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTS
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhcc
Confidence 44567788888877889999999999999999999985 999999999999999987653 48999999999988
Q ss_pred CCCC---CceeeEEeccccccCCChHHHHHHHHh
Q 018740 243 PFAS---SSIDAVHAGAAIHCWSSPSTGVAEISR 273 (351)
Q Consensus 243 p~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~~ 273 (351)
.... .....|+++--. ++ -..++.++..
T Consensus 89 ~~~~~~~~~~~~vv~NlPy-~i--s~~il~~ll~ 119 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLPY-NI--SSPILRKLLE 119 (262)
T ss_dssp CGGGHCSSSEEEEEEEETG-TG--HHHHHHHHHH
T ss_pred ccHHhhcCCceEEEEEecc-cc--hHHHHHHHhh
Confidence 7554 345566654332 22 2345555555
No 229
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.13 E-value=3.7e-05 Score=70.57 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=100.3
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh---h-CCCCCCCeEEEEecCCCC-CCCCCceeeE
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---E-SNFPKENFLLVRADISRL-PFASSSIDAV 252 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~-~g~~~~~i~~~~~d~~~l-p~~~~~fD~V 252 (351)
..+||-+|.|.|..++.+.+.-...+++-+|++|.|++.+++.... + .....+++.++..|+.++ .-..+.||.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 4689999999999999998874356999999999999999843221 1 123357899999998774 3334589999
Q ss_pred EeccccccCCCh----------HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 253 HAGAAIHCWSSP----------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 253 ~~~~vl~h~~d~----------~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
+. .++|| ..+..-+++.|+++|.+++..-..- . . ...|+ .+..
T Consensus 370 IV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y--~--t---------------p~vfw---~i~a 422 (508)
T COG4262 370 IV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY--F--T---------------PRVFW---RIDA 422 (508)
T ss_pred EE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc--c--C---------------Cceee---eehh
Confidence 84 34555 2667788999999999998543210 0 0 11111 3556
Q ss_pred HHHHCCCeEEE----EEecCeEEEEEEecC
Q 018740 323 LCRACGLVDFK----CTRNRGFVMFTATKP 348 (351)
Q Consensus 323 ll~~aGf~~v~----~~~~g~~~~~~a~kp 348 (351)
-++++||.+.- +-++|.|-+..+.+.
T Consensus 423 Tik~AG~~~~Pyhv~VPTFGeWGf~l~~~~ 452 (508)
T COG4262 423 TIKSAGYRVWPYHVHVPTFGEWGFILAAPG 452 (508)
T ss_pred HHHhCcceeeeeEEecCcccccceeecccc
Confidence 77889997755 335677777666553
No 230
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.12 E-value=6e-05 Score=71.45 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=82.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CCCCceeeEEec
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHAG 255 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~ 255 (351)
+.+|||+.||+|..+..++.+.+ ..+|+++|+++.+++.++++++.+ ...++.+++.|+..+- .....||+|...
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N---~~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN---SVENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh---CCCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 35899999999999999998731 358999999999999999999876 1346889999987652 123579999874
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
- +..|..++..+.+.+++||++.++.-
T Consensus 122 P----fGs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 122 P----FGTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C----CCCcHHHHHHHHHhcccCCEEEEEec
Confidence 3 24667899999999999999999853
No 231
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=3.8e-06 Score=68.34 Aligned_cols=123 Identities=16% Similarity=0.077 Sum_probs=82.4
Q ss_pred HHHHHhccCCCCCCeEEEEcCc-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC--C
Q 018740 166 FELMKGYLKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--L 242 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~--l 242 (351)
.-.++.......+.+|||+|.| +|..+..++...+...|...|-++..++-.++....+.-....++..+.-+... .
T Consensus 18 a~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqs 97 (201)
T KOG3201|consen 18 AWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQS 97 (201)
T ss_pred HHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHH
Confidence 3344444444557799999999 477777778777888999999999999888775433210112222222222211 1
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
......||.|++...+-.-.--..+.+.|...|+|.|..++..|.+
T Consensus 98 q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 98 QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 2234589999998876443334678899999999999988877654
No 232
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.08 E-value=3.1e-06 Score=72.22 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=63.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC------C--C--C
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------P--F--A 245 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l------p--~--~ 245 (351)
.+.++||+||++|.|+..+.+++ +..+|+|+|+.+.. ...++..+++|+.+. . + .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------------~~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------------PLQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------------S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------------cccceeeeecccchhhHHHhhhhhcccc
Confidence 45899999999999999999987 44699999998750 135566666665332 1 1 1
Q ss_pred CCceeeEEeccccccCCC----h-------HHHHHHHHhcccCCcEEEEEeec
Q 018740 246 SSSIDAVHAGAAIHCWSS----P-------STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d----~-------~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.+.+|+|++-.+.....+ . ...+.-+...|+|||.+++-...
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 268999999774433222 1 24455556789999999987665
No 233
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.07 E-value=3.1e-05 Score=65.06 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=97.0
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHH----HHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENML----KQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~----~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
++.+....++.+|+|+-.|.|++++.+... ++...|+++=+.+... ...+.+.... .....|++.+-.+...++
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~-e~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAR-EPVYANVEVIGKPLVALG 118 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhh-hhhhhhhhhhCCcccccC
Confidence 455567788999999999999999999886 6666788776554311 1111111000 001345555555655555
Q ss_pred CCCCceeeEEeccccccC-------CChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCC
Q 018740 244 FASSSIDAVHAGAAIHCW-------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLS 316 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~-------~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 316 (351)
+.+..|+++....-|-+ ....++.+++++.|||||++++.+...+--..... ....++.+
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d------------t~~~~ri~ 185 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD------------TITLHRID 185 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh------------hhhhcccC
Confidence 44557777754332222 23358899999999999999998877642211111 12446789
Q ss_pred HHHHHHHHHHCCCeEEE
Q 018740 317 EREIEDLCRACGLVDFK 333 (351)
Q Consensus 317 ~~~l~~ll~~aGf~~v~ 333 (351)
...+.+..+.+||+..-
T Consensus 186 ~a~V~a~veaaGFkl~a 202 (238)
T COG4798 186 PAVVIAEVEAAGFKLEA 202 (238)
T ss_pred hHHHHHHHHhhcceeee
Confidence 99999999999998654
No 234
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.06 E-value=6.6e-06 Score=68.35 Aligned_cols=72 Identities=24% Similarity=0.290 Sum_probs=54.3
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCc-eeeEEec
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSS-IDAVHAG 255 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~-fD~V~~~ 255 (351)
.|+|+.||.|..+..+++.+. +|+++|+++..++.|+.++... |. ..+++++++|+.++. ..... +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vY-Gv-~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVY-GV-ADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHT-T--GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999987 9999999999999999998876 32 568999999987642 22222 8999974
No 235
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.06 E-value=1.6e-05 Score=75.11 Aligned_cols=74 Identities=26% Similarity=0.414 Sum_probs=57.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+.+.+.+.++++..++ .|||+-||.|.++..+++... +|+|+|+++.+++.|++++..+ +..|++|+.++++++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N---~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLN---GIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHT---T--SEEEEE--SHHC
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHc---CCCcceEEEeeccch
Confidence 4556777788887655 899999999999999999876 9999999999999999999987 358999998876543
No 236
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.01 E-value=2.2e-05 Score=66.33 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=78.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC----CCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----NFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
...+.|||||.|.++..|+..+|+..+.|++|-....++.++++...+ +....|+.+...+....- .+-|.---
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l--pn~f~kgq 138 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL--PNFFEKGQ 138 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc--cchhhhcc
Confidence 347999999999999999999999999999999999999999887653 122566777776665421 12222222
Q ss_pred eccccccCCCh-------------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 254 AGAAIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 254 ~~~vl~h~~d~-------------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
..-.+..++|| ...+.+..-+|++||.++..+-..
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 22233444554 266888899999999999876543
No 237
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.00 E-value=3.4e-05 Score=65.85 Aligned_cols=111 Identities=15% Similarity=0.296 Sum_probs=86.6
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PF 244 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~ 244 (351)
+.+++.+. .++++||.||-|-|.....+.++-| .+-+.++..++.++..++..-.. ..++..+.+-.++. .+
T Consensus 92 ha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~e----k~nViil~g~WeDvl~~L 165 (271)
T KOG1709|consen 92 HALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWRE----KENVIILEGRWEDVLNTL 165 (271)
T ss_pred HHHHHHHh-hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccccc----ccceEEEecchHhhhccc
Confidence 34444433 4688999999999998888887765 46678999999999998864444 57788887776553 25
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEE
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~ 283 (351)
+++.||.|+--..-+|..|...+.+.+.++|||+|++-.
T Consensus 166 ~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 166 PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 688999999766557778888899999999999998855
No 238
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=0.00013 Score=65.85 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=102.8
Q ss_pred HHHHHHHHhccCC----CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh--hhC-----------
Q 018740 163 EKEFELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ--QES----------- 225 (351)
Q Consensus 163 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~----------- 225 (351)
...++.+..+.+. ...-+||--|||.|+++..++..|+ .+-|=++|--|+-...=.+. +.+
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~ 209 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQ 209 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeec
Confidence 3445566655543 2345899999999999999999998 67777888777643332221 000
Q ss_pred ------------------------CCCCCCeEEEEecCCCC-C--CCCCceeeEEeccccccCCChHHHHHHHHhcccCC
Q 018740 226 ------------------------NFPKENFLLVRADISRL-P--FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG 278 (351)
Q Consensus 226 ------------------------g~~~~~i~~~~~d~~~l-p--~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg 278 (351)
+..........+|+.+. + -..+.||+|+.++.+..-.+....++.|..+||||
T Consensus 210 ~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 210 YSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred cccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCC
Confidence 00011222233454332 1 12347999999988888788889999999999999
Q ss_pred cEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 279 GVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 279 G~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
|+.+=..|-.-+....... ......-++.+++..+.+..||++++..
T Consensus 290 GvWiNlGPLlYHF~d~~g~----------~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 290 GVWINLGPLLYHFEDTHGV----------ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred cEEEeccceeeeccCCCCC----------cccccccccHHHHHHHHHhcCcEEEEee
Confidence 9988655543111110000 0112345688999999999999988743
No 239
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.97 E-value=7.9e-05 Score=68.72 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.++||+||++|.++..+.++|. .|++||..+ |...... .++|.....|......+.+.+|+++|-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~~L~~---------~~~V~h~~~d~fr~~p~~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQSLMD---------TGQVEHLRADGFKFRPPRKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCHhhhC---------CCCEEEEeccCcccCCCCCCCCEEEEe
Confidence 5688999999999999999999986 999999655 3322222 588999999987654336789999986
Q ss_pred cccccCCChHHHHHHHHhcccCC
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPG 278 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~Lkpg 278 (351)
.+ ..|.+.++-+.+.|..|
T Consensus 278 mv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 278 MV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred cc----cCHHHHHHHHHHHHhcC
Confidence 65 56888888888888766
No 240
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.97 E-value=0.0001 Score=60.27 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHH-----hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCcee
Q 018740 176 VLGGNIIDASCGSGLFSRIFAK-----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 250 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD 250 (351)
.+..+|+|+|||.|+++..++. . +..+|+|+|.++..++.+.++..........++.+..++....+. ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 5677999999999999999998 4 567999999999999999988776511112456666666554321 45577
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+++..++--.+. ..+|+...+ |+-.+++..|..
T Consensus 102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 102 ILVGLHACGDLS--DRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEEeecccchH--HHHHHHHHH---cCCCEEEEcCCc
Confidence 777655533221 233444433 666666655543
No 241
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=4.5e-06 Score=55.88 Aligned_cols=46 Identities=26% Similarity=0.480 Sum_probs=39.5
Q ss_pred cCCCceeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccC
Q 018740 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 121 (351)
.-+++++||.|+++|.... +.+.+.|+.|+..|++.+|++.++.+.
T Consensus 4 ~LLeiLaCP~~kg~L~~~~---------~~~~L~c~~~~~aYpI~dGIPvlL~~e 49 (60)
T COG2835 4 RLLEILACPVCKGPLVYDE---------EKQELICPRCKLAYPIRDGIPVLLPDE 49 (60)
T ss_pred hhheeeeccCcCCcceEec---------cCCEEEecccCceeecccCccccCchh
Confidence 4578999999999987764 346899999999999999999998753
No 242
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.91 E-value=8.7e-05 Score=67.93 Aligned_cols=119 Identities=24% Similarity=0.267 Sum_probs=91.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P- 243 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p- 243 (351)
......+.+.++..|||+.++.|.-+..+++... .+.+++.|+++.-++..++++... +..++.....|.... +
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~---g~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL---GVFNVIVINADARKLDPK 151 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT---T-SSEEEEESHHHHHHHH
T ss_pred ccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc---CCceEEEEeecccccccc
Confidence 3445567788899999999999998888888754 679999999999999999988876 357788887887665 1
Q ss_pred CCCCceeeEEec------cccccCCCh----------------HHHHHHHHhcc----cCCcEEEEEeecc
Q 018740 244 FASSSIDAVHAG------AAIHCWSSP----------------STGVAEISRVL----RPGGVFVGTTYIV 288 (351)
Q Consensus 244 ~~~~~fD~V~~~------~vl~h~~d~----------------~~~l~~i~~~L----kpgG~li~~~~~~ 288 (351)
.....||.|+.- +++..-++. .++|+.+.+.+ ||||+++.+|-..
T Consensus 152 ~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 152 KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 223469999952 334433331 37799999999 9999999988653
No 243
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.90 E-value=7.2e-05 Score=63.07 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=82.8
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...-..-.+++|||+|+|+|..+...++.|. ..|+..|+.+......+-+++.+ ..++.+...|.-. .+
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~an----gv~i~~~~~d~~g---~~ 140 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAAN----GVSILFTHADLIG---SP 140 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhc----cceeEEeeccccC---CC
Confidence 3444443445678999999999999999999884 58999999998888888887777 6788888888765 35
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCc-EEEEEeecc
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG-VFVGTTYIV 288 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG-~li~~~~~~ 288 (351)
..||+|+...++..=+.-.+++. ..+.|+..| .+++-+|.+
T Consensus 141 ~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 141 PAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred cceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 67999999998765444456666 555555555 455555543
No 244
>PRK11827 hypothetical protein; Provisional
Probab=97.88 E-value=7e-06 Score=55.62 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=37.7
Q ss_pred CCCceeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccC
Q 018740 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 68 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 121 (351)
-+++++||.|+++|.... ..+.+.|..|+..|++++|++.++.+.
T Consensus 5 LLeILaCP~ckg~L~~~~---------~~~~Lic~~~~laYPI~dgIPVlL~de 49 (60)
T PRK11827 5 LLEIIACPVCNGKLWYNQ---------EKQELICKLDNLAFPLRDGIPVLLETE 49 (60)
T ss_pred HHhheECCCCCCcCeEcC---------CCCeEECCccCeeccccCCccccCHHH
Confidence 467899999999997653 236799999999999999999987653
No 245
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=1.3e-06 Score=70.47 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=49.0
Q ss_pred CCeEEEEecCCCCCCCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeecc
Q 018740 230 ENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 230 ~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+.+.+++-.....+|.+++.|+|.+.++++|+.-. ..++++.++.|||||+|-+..|..
T Consensus 29 ~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 29 PEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 34555555556678999999999999999999643 488999999999999999998865
No 246
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.82 E-value=0.0011 Score=57.12 Aligned_cols=134 Identities=14% Similarity=0.047 Sum_probs=95.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
...++.+++. +.++.||||-.|++..++.+.++...+++.|+++..++.|.+++... +. .++++...+|....=-.
T Consensus 7 L~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~-~l-~~~i~vr~~dgl~~l~~ 82 (226)
T COG2384 7 LTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN-NL-SERIDVRLGDGLAVLEL 82 (226)
T ss_pred HHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc-CC-cceEEEeccCCccccCc
Confidence 3456666655 44599999999999999999998889999999999999999998886 22 67788888887332123
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+..+|+|+..++=-. -....|++-.+.|+.=-.+++. | .-...+++++|.
T Consensus 83 ~d~~d~ivIAGMGG~--lI~~ILee~~~~l~~~~rlILQ-P---------------------------n~~~~~LR~~L~ 132 (226)
T COG2384 83 EDEIDVIVIAGMGGT--LIREILEEGKEKLKGVERLILQ-P---------------------------NIHTYELREWLS 132 (226)
T ss_pred cCCcCEEEEeCCcHH--HHHHHHHHhhhhhcCcceEEEC-C---------------------------CCCHHHHHHHHH
Confidence 447999987654221 1234555555555533334431 1 114568999999
Q ss_pred HCCCeEEE
Q 018740 326 ACGLVDFK 333 (351)
Q Consensus 326 ~aGf~~v~ 333 (351)
..+|..+.
T Consensus 133 ~~~~~I~~ 140 (226)
T COG2384 133 ANSYEIKA 140 (226)
T ss_pred hCCceeee
Confidence 99998877
No 247
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.80 E-value=9.4e-05 Score=60.33 Aligned_cols=59 Identities=25% Similarity=0.274 Sum_probs=50.4
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
++||+|||.|.++..+++.++..+++++|+++.+.+.+++++..+ + ..++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n-~--~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN-N--LPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc-C--CCcEEEEEeeeeC
Confidence 489999999999999999988778999999999999999988765 2 3568888877654
No 248
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.79 E-value=0.00016 Score=66.31 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=73.5
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
-+.+.+.+.+...+++.++|.=+|.|..+..+++..+.++|+|+|.++.+++.+++++... ..++.++.+++.++.
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFANFF 82 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHHHH
Confidence 3456677778778888999999999999999998865589999999999999999988765 568999999987753
Q ss_pred -----CCCCceeeEEeccc
Q 018740 244 -----FASSSIDAVHAGAA 257 (351)
Q Consensus 244 -----~~~~~fD~V~~~~v 257 (351)
....++|.|++.-.
T Consensus 83 ~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 83 EHLDELLVTKIDGILVDLG 101 (305)
T ss_pred HHHHhcCCCcccEEEEecc
Confidence 12357999997543
No 249
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.74 E-value=0.00038 Score=62.87 Aligned_cols=108 Identities=14% Similarity=0.186 Sum_probs=66.3
Q ss_pred CCeEEEEcCccCHHH-HHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 178 GGNIIDASCGSGLFS-RIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~-~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
+.+|+=||||.=-++ ..+++. +....++++|+++.+++.+++.+....|. ..++.++.+|....+..-..||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-SKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH--SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-cCCeEEEecchhccccccccCCEEEEh
Confidence 459999999975544 444443 45568999999999999999877622121 578999999998776555689999976
Q ss_pred cccccC-CChHHHHHHHHhcccCCcEEEEEee
Q 018740 256 AAIHCW-SSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 256 ~vl~h~-~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
....-- .+..++|+.+.+.++||..+++-..
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 654422 3667999999999999999988633
No 250
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.0002 Score=68.78 Aligned_cols=76 Identities=14% Similarity=0.237 Sum_probs=65.1
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
.+.+...+.+++....+..+||+-||||.++..+++... .|+|+++++++++.|+.++..+ +..|.+|+++-+++
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~N---gisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQIN---GISNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhc---Cccceeeeecchhh
Confidence 344566777888888889999999999999999998865 9999999999999999998887 36899999996655
Q ss_pred C
Q 018740 242 L 242 (351)
Q Consensus 242 l 242 (351)
+
T Consensus 443 ~ 443 (534)
T KOG2187|consen 443 L 443 (534)
T ss_pred c
Confidence 3
No 251
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.0037 Score=53.18 Aligned_cols=147 Identities=11% Similarity=0.090 Sum_probs=97.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---CCCCcee
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSID 250 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~~fD 250 (351)
+..++.+||=+|..+|.....+++--....++++++|+.+.+..-..+... +|+--+..|+.... .--+..|
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhccccc
Confidence 466789999999999999999988755678999999998877666655543 78888888986532 1124588
Q ss_pred eEEeccccccCCChH---HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHC
Q 018740 251 AVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 327 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~---~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~a 327 (351)
+|+. .+..|. -+..++..-||+||.+++..-...-.....+ .. . -++-.+.|++.
T Consensus 148 viy~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp-~~----v------------f~~ev~kL~~~ 205 (231)
T COG1889 148 VIYQ-----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP-EE----V------------FKDEVEKLEEG 205 (231)
T ss_pred EEEE-----ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH-HH----H------------HHHHHHHHHhc
Confidence 8874 344443 4577888999999977775543321100111 00 0 01233466778
Q ss_pred CCeEEEEEecCe----EEEEEEec
Q 018740 328 GLVDFKCTRNRG----FVMFTATK 347 (351)
Q Consensus 328 Gf~~v~~~~~g~----~~~~~a~k 347 (351)
||++++...... +.++.+++
T Consensus 206 ~f~i~e~~~LePye~DH~~i~~~~ 229 (231)
T COG1889 206 GFEILEVVDLEPYEKDHALIVAKY 229 (231)
T ss_pred CceeeEEeccCCcccceEEEEEee
Confidence 999988665433 45555544
No 252
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.001 Score=58.15 Aligned_cols=147 Identities=16% Similarity=0.161 Sum_probs=94.9
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEE-EEecCCCCCCC-
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL-VRADISRLPFA- 245 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~-~~~d~~~lp~~- 245 (351)
.+..+--..++..+||||+.||.|+..+.++|. ..|+++|..-+.+..--+. .+++.. ...++..+...
T Consensus 70 ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN~r~l~~~~ 140 (245)
T COG1189 70 ALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRN--------DPRVIVLERTNVRYLTPED 140 (245)
T ss_pred HHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhc--------CCcEEEEecCChhhCCHHH
Confidence 333333344678999999999999999999974 5999999998777665543 455544 34555544311
Q ss_pred -CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh----ccCCccCCCHHHH
Q 018740 246 -SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ----ISGSYTFLSEREI 320 (351)
Q Consensus 246 -~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~l 320 (351)
.+..|++++--.+- ....+|-.+..+++|+|.++...- |.++.-+..... .....+..-...+
T Consensus 141 ~~~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvK---------PQFEagr~~v~kkGvv~d~~~~~~v~~~i 208 (245)
T COG1189 141 FTEKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLVK---------PQFEAGREQVGKKGVVRDPKLHAEVLSKI 208 (245)
T ss_pred cccCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEec---------chhhhhhhhcCcCceecCcchHHHHHHHH
Confidence 23678998866644 457789999999999998776321 222221111110 0011222245788
Q ss_pred HHHHHHCCCeEEEEE
Q 018740 321 EDLCRACGLVDFKCT 335 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~ 335 (351)
.++++..||++....
T Consensus 209 ~~~~~~~g~~~~gl~ 223 (245)
T COG1189 209 ENFAKELGFQVKGLI 223 (245)
T ss_pred HHHHhhcCcEEeeeE
Confidence 899999999987743
No 253
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.67 E-value=0.00092 Score=57.94 Aligned_cols=150 Identities=13% Similarity=0.148 Sum_probs=93.2
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---CCCCc
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS 248 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~~ 248 (351)
+...++.+||-+|.++|.....+++- ++.+.|+++++|+...+..-..++. .+|+--+..|+.... .--+.
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhccccc
Confidence 34567899999999999999999886 5577999999999665555543333 489988999987532 11347
Q ss_pred eeeEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHC
Q 018740 249 IDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 327 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~-~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~a 327 (351)
+|+|++.-+ -++. .-++.++...||+||.+++..-.........+- . --.+-.+.|++.
T Consensus 144 VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~-~----------------vf~~e~~~L~~~ 203 (229)
T PF01269_consen 144 VDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPE-E----------------VFAEEVKKLKEE 203 (229)
T ss_dssp EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHH-H----------------HHHHHHHHHHCT
T ss_pred ccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHH-H----------------HHHHHHHHHHHc
Confidence 999996433 1333 356778888999999999875432100000010 0 002334566778
Q ss_pred CCeEEEEEecC----eEEEEEEec
Q 018740 328 GLVDFKCTRNR----GFVMFTATK 347 (351)
Q Consensus 328 Gf~~v~~~~~g----~~~~~~a~k 347 (351)
||++++..... .+.++.++.
T Consensus 204 ~~~~~e~i~LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 204 GFKPLEQITLEPYERDHAMVVGRY 227 (229)
T ss_dssp TCEEEEEEE-TTTSTTEEEEEEEE
T ss_pred CCChheEeccCCCCCCcEEEEEEe
Confidence 99998876553 245555543
No 254
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.66 E-value=5.8e-05 Score=64.67 Aligned_cols=91 Identities=23% Similarity=0.261 Sum_probs=70.1
Q ss_pred cHHHHHHHHhccCCC-CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 162 PEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
++.....++...... ....|+|.-||.|..+..++..++ .|+++|++|.-+.-|+.+++-. |+.. ++.|+++|+.
T Consensus 78 pe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiY-GI~~-rItFI~GD~l 153 (263)
T KOG2730|consen 78 PEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVY-GVPD-RITFICGDFL 153 (263)
T ss_pred cHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceee-cCCc-eeEEEechHH
Confidence 455555555544221 456899999999999999999998 9999999999999999998877 6644 9999999986
Q ss_pred CC----CCCCCceeeEEecc
Q 018740 241 RL----PFASSSIDAVHAGA 256 (351)
Q Consensus 241 ~l----p~~~~~fD~V~~~~ 256 (351)
++ .+....+|+|+.+.
T Consensus 154 d~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 154 DLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred HHHHHHhhhhheeeeeecCC
Confidence 54 44445567777653
No 255
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.65 E-value=0.00072 Score=59.71 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=91.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+...+.+...++. ..+|+|||||.=-++..+....+...++|+|++..+++.....+... ..+.+....|+..-
T Consensus 93 d~fY~~if~~~~~--p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l----~~~~~~~v~Dl~~~ 166 (251)
T PF07091_consen 93 DEFYDEIFGRIPP--PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL----GVPHDARVRDLLSD 166 (251)
T ss_dssp HHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT----T-CEEEEEE-TTTS
T ss_pred HHHHHHHHhcCCC--CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh----CCCcceeEeeeecc
Confidence 3444444444333 67999999999998888887776779999999999999999988776 67888888898765
Q ss_pred CCCCCceeeEEeccccccCCChH-HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPS-TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~-~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
+ +....|+.+..=+++.+.... ..--++.+.+. .=.++++.|...- ..-...+.. + -...++
T Consensus 167 ~-~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL--------~gR~~gm~~---~----y~~~fe 229 (251)
T PF07091_consen 167 P-PKEPADLALLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPTRSL--------GGRNKGMEQ---T----YSAWFE 229 (251)
T ss_dssp H-TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES---------------TTHHH---C----HHHHHH
T ss_pred C-CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEecccccc--------ccCcccccc---C----HHHHHH
Confidence 4 357799999998888775332 11122222221 2266667665431 111111111 1 135788
Q ss_pred HHHHHCCCeEEEE
Q 018740 322 DLCRACGLVDFKC 334 (351)
Q Consensus 322 ~ll~~aGf~~v~~ 334 (351)
.++..-|+.+-+.
T Consensus 230 ~~~~~~~~~~~~~ 242 (251)
T PF07091_consen 230 ALAAERGWIVDRL 242 (251)
T ss_dssp HHCCTTCEEEEEE
T ss_pred HhcccCCceeeee
Confidence 8888888884443
No 256
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.62 E-value=0.00013 Score=61.02 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=75.9
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecccc
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 258 (351)
+.+.|+|.|+|.++...+.... +|++++.+|...+.|.+++... +..+++++.+|+....| ...|+|+|-..=
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~---g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVP---GDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCC---CCcceEEEecccccccc--cccceeHHHHhh
Confidence 5899999999999988888755 9999999999999999987554 25789999999999887 457999974321
Q ss_pred cc-CC-ChHHHHHHHHhcccCCcEEEE
Q 018740 259 HC-WS-SPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 259 ~h-~~-d~~~~l~~i~~~LkpgG~li~ 283 (351)
-- +. .....+..+...|+-++.++=
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCcccc
Confidence 11 11 223667777778888887763
No 257
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=97.57 E-value=3e-05 Score=54.84 Aligned_cols=47 Identities=30% Similarity=0.568 Sum_probs=32.1
Q ss_pred cCCCceeCCCCCCCcccccCCC-------------------cccccccCCccccccccccccccCc
Q 018740 67 TSKNVLACPICYKPLTWIGDSS-------------------LSIESAAGSSLQCNTCKKTYSGVGT 113 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~-------------------~~~~~~~~~~~~C~~C~~~~~~~~g 113 (351)
..+++|+||.|+++|.+..-.. .-..++..+.+.|++|++.|++.+|
T Consensus 3 ~llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 3 LLLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG 68 (68)
T ss_dssp GGCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred hHHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence 4578999999999881110000 0013477899999999999999876
No 258
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.0014 Score=54.91 Aligned_cols=101 Identities=17% Similarity=0.259 Sum_probs=69.2
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-cCCCC--------CC
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRL--------PF 244 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d~~~l--------p~ 244 (351)
..|+.+|||+||..|.++....++ +|.+-|.|+|+-.- .+.+++.++++ |+.+. .+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------------~p~~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------------EPPEGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------------cCCCCcccccccccCCHHHHHHHHHhC
Confidence 456899999999999999999887 48889999998431 01345666666 65442 14
Q ss_pred CCCceeeEEecccc--------ccCCCh---HHHHHHHHhcccCCcEEEEEeeccC
Q 018740 245 ASSSIDAVHAGAAI--------HCWSSP---STGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 245 ~~~~fD~V~~~~vl--------~h~~d~---~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
++...|+|++-..- .|.... ..+|.-....++|+|.+++-.+..+
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 57789999975432 222111 1344445567889999999888654
No 259
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.31 E-value=8.2e-05 Score=57.48 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=42.3
Q ss_pred EEEcCccCHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CCCCCceeeEEecc
Q 018740 182 IDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAGA 256 (351)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~~ 256 (351)
||||+..|..+..+++.... .+++++|+.+. .+..++.++.. + ...++.++.++..+. .++.+++|+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-~-~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-G-LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------G-G-G-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc-C-CCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 68999999988887765332 26999999984 22222222211 1 145799999998643 22357899999754
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
. |..+.....++.+.+.|+|||++++-+
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3 222334567889999999999998753
No 260
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.27 E-value=0.0087 Score=56.76 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=88.2
Q ss_pred CCeEEEEcCccCHHHHHHHH--------h-------CCCCeEEEEeCCHHHHHHHHHHHhhhCC--------C--CCCC-
Q 018740 178 GGNIIDASCGSGLFSRIFAK--------S-------GLFSLVVALDYSENMLKQCYEFVQQESN--------F--PKEN- 231 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~--------~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~g--------~--~~~~- 231 (351)
..+|+|+|||+|.++..+.. + .|+.+|..-|.-.+-....-+.+..... . ...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 56899999999977654432 1 1345777777653322222222211000 0 0011
Q ss_pred --eEEEEecCCCCCCCCCceeeEEeccccccCCC-hH-------------------------------------HHHHHH
Q 018740 232 --FLLVRADISRLPFASSSIDAVHAGAAIHCWSS-PS-------------------------------------TGVAEI 271 (351)
Q Consensus 232 --i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d-~~-------------------------------------~~l~~i 271 (351)
+..+.+.+..--||+++.+++++...+||+.. |. .+|+-=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223445444578999999999999999853 11 233334
Q ss_pred HhcccCCcEEEEEeeccCCCCCcc------hH---HHHHHHHH-----------hhccCCccCCCHHHHHHHHHHCCCeE
Q 018740 272 SRVLRPGGVFVGTTYIVDGPFNLI------PF---SRLLRQNM-----------MQISGSYTFLSEREIEDLCRACGLVD 331 (351)
Q Consensus 272 ~~~LkpgG~li~~~~~~~~~~~~~------~~---~~~~~~~~-----------~~~~~~~~~~s~~~l~~ll~~aGf~~ 331 (351)
++-|.|||.++++...+....... .+ +...+..+ ....-...+.+.+|+++..++.|.-.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 466889999999988764322110 01 11111111 11222445779999999999988755
Q ss_pred EE
Q 018740 332 FK 333 (351)
Q Consensus 332 v~ 333 (351)
++
T Consensus 304 I~ 305 (386)
T PLN02668 304 ID 305 (386)
T ss_pred ee
Confidence 55
No 261
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.25 E-value=0.013 Score=53.63 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=46.6
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-----CCCCCCceeeE
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----LPFASSSIDAV 252 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-----lp~~~~~fD~V 252 (351)
.-++||||+|....-..|..+..+++++|.|+++..++.|++++..+.+ ...+|.++...-.. +-..++.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~-L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPN-LESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T--TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccc-cccceEEEEcCCccccchhhhcccceeeEE
Confidence 3579999999875433332221245999999999999999999987622 36778887654221 22234689999
Q ss_pred EeccccccCC
Q 018740 253 HAGAAIHCWS 262 (351)
Q Consensus 253 ~~~~vl~h~~ 262 (351)
+|+--++.-.
T Consensus 182 mCNPPFy~s~ 191 (299)
T PF05971_consen 182 MCNPPFYSSQ 191 (299)
T ss_dssp EE-----SS-
T ss_pred ecCCccccCh
Confidence 9987776543
No 262
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.11 E-value=0.0029 Score=61.02 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=65.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCH----HHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE----NMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V 252 (351)
.-..|+|+..|.|.|+.+|.+.. |..+.+-+ +.+...-++ |+ +-...-=.+.++.-..+||+|
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIydR-----GL----IG~yhDWCE~fsTYPRTYDLl 431 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYDR-----GL----IGVYHDWCEAFSTYPRTYDLL 431 (506)
T ss_pred ceeeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhhc-----cc----chhccchhhccCCCCcchhhe
Confidence 34579999999999999998752 44444333 333333332 11 111111124455556899999
Q ss_pred EeccccccCC---ChHHHHHHHHhcccCCcEEEEEee
Q 018740 253 HAGAAIHCWS---SPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 253 ~~~~vl~h~~---d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+.+++.+.. +...+|-|+-|+|+|||.+++.+.
T Consensus 432 HA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 432 HADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred ehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 9999987765 456889999999999999998543
No 263
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.98 E-value=0.053 Score=49.03 Aligned_cols=164 Identities=10% Similarity=-0.036 Sum_probs=96.8
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-C----
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L---- 242 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-l---- 242 (351)
.+.+.+... ...|+.+|||-=.-...+.. .+...++=+|. |+.++.-++.+.+.......+..++.+|+.. +
T Consensus 73 ~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L 149 (260)
T TIGR00027 73 FLLAAVAAG-IRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAAL 149 (260)
T ss_pred HHHHHHhcC-CcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHH
Confidence 344444432 34799999997555544422 22234444554 5566666666664311125678899999852 1
Q ss_pred ---CCCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh--hccCCccCC
Q 018740 243 ---PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFL 315 (351)
Q Consensus 243 ---p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 315 (351)
.+..+.--++++-+++.+++.. ..+|+.+.+...||+.+++.....-................. ....-...+
T Consensus 150 ~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (260)
T TIGR00027 150 AAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGI 229 (260)
T ss_pred HhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCC
Confidence 1223345588888899998754 478999998888999998876543100000001111111111 112233467
Q ss_pred CHHHHHHHHHHCCCeEEEE
Q 018740 316 SEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 316 s~~~l~~ll~~aGf~~v~~ 334 (351)
+.+++.++|+..||+....
T Consensus 230 ~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 230 DRADVAEWLAERGWRASEH 248 (260)
T ss_pred ChhhHHHHHHHCCCeeecC
Confidence 8999999999999998764
No 264
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.98 E-value=0.035 Score=52.09 Aligned_cols=154 Identities=21% Similarity=0.126 Sum_probs=78.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--------C--------CCCeEEEEeCCHHHHHHHHHHHhhh----CCCCCCCeEEEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKS--------G--------LFSLVVALDYSENMLKQCYEFVQQE----SNFPKENFLLVR 236 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~--------~--------~~~~v~gvD~s~~~~~~a~~~~~~~----~g~~~~~i~~~~ 236 (351)
..-+|+|+||..|..+..+... . |..+|+--|+-.+-....-+.+... .....--+..+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 3458999999999988766542 1 2347888886433222221111111 000011233455
Q ss_pred ecCCCCCCCCCceeeEEeccccccCCC-h--------------------------------------HHHHHHHHhcccC
Q 018740 237 ADISRLPFASSSIDAVHAGAAIHCWSS-P--------------------------------------STGVAEISRVLRP 277 (351)
Q Consensus 237 ~d~~~lp~~~~~fD~V~~~~vl~h~~d-~--------------------------------------~~~l~~i~~~Lkp 277 (351)
+.+..--+|+++.|++++..++||+.. | ..+|+.=++-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 677665678999999999999999842 0 1234444567889
Q ss_pred CcEEEEEeeccCCCCCc-------chHHHHHHHHHhh-----------ccCCccCCCHHHHHHHHHHCCCe
Q 018740 278 GGVFVGTTYIVDGPFNL-------IPFSRLLRQNMMQ-----------ISGSYTFLSEREIEDLCRACGLV 330 (351)
Q Consensus 278 gG~li~~~~~~~~~~~~-------~~~~~~~~~~~~~-----------~~~~~~~~s~~~l~~ll~~aGf~ 330 (351)
||++++.....+..... ...+...+..+.. ..-...+.+.+++++.+++.|--
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF 246 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSF 246 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSE
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCE
Confidence 99999999887652211 1122222222211 12234577899999999887753
No 265
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.97 E-value=0.0018 Score=59.53 Aligned_cols=86 Identities=17% Similarity=0.319 Sum_probs=64.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (351)
.+.+.+.+.+.+++.++|.--|.|..+..+.+..++++++|+|.++.+++.+++++... ..++.++.+++.++.
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l~~~ 84 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNLDEY 84 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGHHHH
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHHHHH
Confidence 45566777788889999999999999999999877789999999999999999887765 689999999988763
Q ss_pred ---C-CCCceeeEEec
Q 018740 244 ---F-ASSSIDAVHAG 255 (351)
Q Consensus 244 ---~-~~~~fD~V~~~ 255 (351)
. .-..+|.|++-
T Consensus 85 l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 85 LKELNGINKVDGILFD 100 (310)
T ss_dssp HHHTTTTS-EEEEEEE
T ss_pred HHHccCCCccCEEEEc
Confidence 2 33578988864
No 266
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.96 E-value=0.0048 Score=49.84 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=57.1
Q ss_pred eEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCceeeEEecccc------ccCCChH---HHHHHH
Q 018740 203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAI------HCWSSPS---TGVAEI 271 (351)
Q Consensus 203 ~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl------~h~~d~~---~~l~~i 271 (351)
+|+|+|+-+++++..++++.+. +. ..++.++..+=+++. .+.+++|+++.+... ..+..+. .+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~-~~-~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA-GL-EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-T--GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhc-CC-CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999999887 22 357999988766654 223589999876432 1112233 778999
Q ss_pred HhcccCCcEEEEEeecc
Q 018740 272 SRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 272 ~~~LkpgG~li~~~~~~ 288 (351)
.++|+|||++.+..+..
T Consensus 79 l~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHEEEEEEEEEEE--S
T ss_pred HHhhccCCEEEEEEeCC
Confidence 99999999999987753
No 267
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.88 E-value=0.013 Score=55.38 Aligned_cols=112 Identities=23% Similarity=0.240 Sum_probs=82.5
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---CCCCc
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS 248 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~~ 248 (351)
+.++++.+|||+.+..|.=+.+++.. ...+.|++.|.+.+-++..+.++... +..+......|...+| ++. +
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl---Gv~ntiv~n~D~~ef~~~~~~~-~ 312 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL---GVTNTIVSNYDGREFPEKEFPG-S 312 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh---CCCceEEEccCcccccccccCc-c
Confidence 46788999999999998765555543 22348999999999999999998887 2567777778877665 333 8
Q ss_pred eeeEE----ecc--ccccC------C----------ChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 249 IDAVH----AGA--AIHCW------S----------SPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 249 fD~V~----~~~--vl~h~------~----------d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
||-|+ |++ ++.-- . =..++|.....++++||+|+.+|-..
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 99999 344 33111 1 02477888899999999999988654
No 268
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.86 E-value=0.00038 Score=53.34 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=45.6
Q ss_pred ceeeEEeccccccC----CC--hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 248 SIDAVHAGAAIHCW----SS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 248 ~fD~V~~~~vl~h~----~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
.||+|+|..|.-++ .| ...+++.+++.|+|||.+++......++.............+.. .-+.++.+.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~-----i~lrP~~F~ 75 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKS-----IKLRPDQFE 75 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH---------GGGHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhc-----eEEChHHHH
Confidence 48999999886543 12 34889999999999999999876544332222222223333322 124556788
Q ss_pred HHHHH--CCCeEEEE
Q 018740 322 DLCRA--CGLVDFKC 334 (351)
Q Consensus 322 ~ll~~--aGf~~v~~ 334 (351)
..|.+ .||..++.
T Consensus 76 ~~L~~~evGF~~~e~ 90 (110)
T PF06859_consen 76 DYLLEPEVGFSSVEE 90 (110)
T ss_dssp HHHTSTTT---EEEE
T ss_pred HHHHhcccceEEEEE
Confidence 87776 69988763
No 269
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.83 E-value=0.0023 Score=55.10 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=56.0
Q ss_pred CCeEEEEcCccCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----CC----
Q 018740 178 GGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FA---- 245 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----~~---- 245 (351)
+..|+|+|.-.|..+..++.. +...+|+|+|++........ .+.. ...++|+++++|..+.. ..
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~h--p~~~rI~~i~Gds~d~~~~~~v~~~~~ 108 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESH--PMSPRITFIQGDSIDPEIVDQVRELAS 108 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG------TTEEEEES-SSSTHHHHTSGSS--
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhc--cccCceEEEECCCCCHHHHHHHHHhhc
Confidence 469999999998877666542 35679999999643322111 1110 11379999999986542 11
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.....+|+ -.+-|.-.+..+.|+....++++|+++++.+...
T Consensus 109 ~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 109 PPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp --SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred cCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 12223333 3333444566788888999999999999976543
No 270
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.015 Score=46.93 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=80.4
Q ss_pred CcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
...+..+.++.++...+.++.+|+|+|.|+...+.++.+ -...+|+++++-.+.+++-+.-.. |. .....|..-|+-
T Consensus 56 AtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~-g~-~k~trf~Rkdlw 132 (199)
T KOG4058|consen 56 ATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRA-GC-AKSTRFRRKDLW 132 (199)
T ss_pred ccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHH-hc-ccchhhhhhhhh
Confidence 345667778888888888899999999999999988887 237899999999999888765444 22 567788888887
Q ss_pred CCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 241 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
+..+.+ |..|+.+.+-.-++|.+ .++..-|..+..++..-
T Consensus 133 K~dl~d--y~~vviFgaes~m~dLe---~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 133 KVDLRD--YRNVVIFGAESVMPDLE---DKLRTELPANTRVVACR 172 (199)
T ss_pred hccccc--cceEEEeehHHHHhhhH---HHHHhhCcCCCeEEEEe
Confidence 766544 44444434322233333 34444555666665543
No 271
>PRK10742 putative methyltransferase; Provisional
Probab=96.74 E-value=0.01 Score=52.64 Aligned_cols=92 Identities=14% Similarity=0.041 Sum_probs=66.8
Q ss_pred HHHHhccCCCCCC--eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-----CC-CCCCeEEEEec
Q 018740 167 ELMKGYLKPVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----NF-PKENFLLVRAD 238 (351)
Q Consensus 167 ~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----g~-~~~~i~~~~~d 238 (351)
+.+.+.++..++. +|||.-+|.|..+..++..|. +|+++|-++.+....++.+.... +. -..+++++.+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4566666666665 899999999999999999976 89999999999988888776620 00 01467888888
Q ss_pred CCCC-CCCCCceeeEEecccccc
Q 018740 239 ISRL-PFASSSIDAVHAGAAIHC 260 (351)
Q Consensus 239 ~~~l-p~~~~~fD~V~~~~vl~h 260 (351)
..+. .-...+||+|++-=.+.|
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 7543 212236899997555544
No 272
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.65 E-value=0.12 Score=45.61 Aligned_cols=101 Identities=18% Similarity=0.103 Sum_probs=58.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCC-CCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF-ASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~-~~~~fD~V~~ 254 (351)
.+++||-+|=.. ..+.+++..+...+|+.+|+++.+++..++.+.+. ..+++.+..|+.+ +|- -.++||+++.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~----gl~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEE----GLPIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH----T--EEEE---TTS---TTTSS-BSEEEE
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc----CCceEEEEecccccCCHHHhcCCCEEEe
Confidence 478999999433 34455555566779999999999999999988887 4559999999966 442 2478999996
Q ss_pred ccccccCCChHHHHHHHHhcccCCc-EEEE
Q 018740 255 GAAIHCWSSPSTGVAEISRVLRPGG-VFVG 283 (351)
Q Consensus 255 ~~vl~h~~d~~~~l~~i~~~LkpgG-~li~ 283 (351)
.-. +-..-..-++......||..| ..++
T Consensus 119 DPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 119 DPP-YTPEGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp ----SSHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred CCC-CCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 211 111112366788888888766 4343
No 273
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.64 E-value=0.03 Score=55.39 Aligned_cols=129 Identities=20% Similarity=0.165 Sum_probs=92.0
Q ss_pred CCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC----CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe
Q 018740 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL----FSLVVALDYSENMLKQCYEFVQQESNFPKENF 232 (351)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i 232 (351)
+.++.|....+.+...+.+.+..+|.|..||+|.+.....+... ...++|.|+++.....|+.++--+ |... .+
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh-gi~~-~~ 243 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH-GIEG-DA 243 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh-CCCc-cc
Confidence 56788999999999999887778999999999998776665421 257899999999999999987766 3322 34
Q ss_pred EEEEecCCCCC-C----CCCceeeEEeccccc---cCC---------------------Ch-HHHHHHHHhcccCCcEEE
Q 018740 233 LLVRADISRLP-F----ASSSIDAVHAGAAIH---CWS---------------------SP-STGVAEISRVLRPGGVFV 282 (351)
Q Consensus 233 ~~~~~d~~~lp-~----~~~~fD~V~~~~vl~---h~~---------------------d~-~~~l~~i~~~LkpgG~li 282 (351)
....+|-..-| . ..+.||.|+++--+. +.. .. ..+++.+...|+|||...
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 44555443333 2 336799998763221 110 01 477999999999999777
Q ss_pred EEeec
Q 018740 283 GTTYI 287 (351)
Q Consensus 283 ~~~~~ 287 (351)
+..+.
T Consensus 324 ivl~~ 328 (489)
T COG0286 324 IVLPD 328 (489)
T ss_pred EEecC
Confidence 66654
No 274
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.58 E-value=0.02 Score=51.89 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=72.2
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
-+.+.+.+.|.+.+++..+|.--|.|..+..+.+.++ ..+++|+|-++.+++.|++++... .+++.++...+.++
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F~~l 85 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNFANL 85 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcHHHH
Confidence 3456677888888899999999999999999999875 346999999999999999998886 68999999988765
Q ss_pred C-----CCCCceeeEEec
Q 018740 243 P-----FASSSIDAVHAG 255 (351)
Q Consensus 243 p-----~~~~~fD~V~~~ 255 (351)
. ..-+.+|.|+.-
T Consensus 86 ~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 86 AEALKELGIGKVDGILLD 103 (314)
T ss_pred HHHHHhcCCCceeEEEEe
Confidence 3 223578888754
No 275
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.01 Score=54.72 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=73.6
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC----CC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI----SR 241 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~----~~ 241 (351)
+.+......-...+|||+|.|.|..+.++..-.|. ..++.++.|+..-+......... ......+...|+ ..
T Consensus 103 ~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv---~t~~td~r~s~vt~dRl~ 179 (484)
T COG5459 103 DELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV---STEKTDWRASDVTEDRLS 179 (484)
T ss_pred HHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc---ccccCCCCCCccchhccC
Confidence 33444445555678999999999988777776652 35778888887666555432221 122222222232 23
Q ss_pred CCCCCCceeeEEeccccccCCCh---HHHHHHHHhcccCCcEEEEEeecc
Q 018740 242 LPFASSSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~h~~d~---~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+|. ...|++|+..+-|-|...+ ...++.+..++.|||.+++.++..
T Consensus 180 lp~-ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 180 LPA-ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred CCc-cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 332 3456776666555554433 257888999999999999988764
No 276
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.38 E-value=0.035 Score=51.73 Aligned_cols=98 Identities=18% Similarity=0.149 Sum_probs=67.7
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEec-CCCCCCCCCceee
Q 018740 174 KPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-ISRLPFASSSIDA 251 (351)
Q Consensus 174 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d-~~~lp~~~~~fD~ 251 (351)
...++.+|+=+|+| -|.++..+++.. ..+|+++|.|++-.+.|++.- .-.++... ......-.+.||+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lG---------Ad~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLG---------ADHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhC---------CcEEEEcCCchhhHHhHhhCcE
Confidence 45678899999987 356777778753 259999999999999998852 22233322 2222211234999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 252 V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
|+..-. ...+....+.|++||.+++.-...
T Consensus 233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 233 IIDTVG-------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred EEECCC-------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 985443 445788889999999999977653
No 277
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.27 E-value=0.0098 Score=51.58 Aligned_cols=97 Identities=23% Similarity=0.380 Sum_probs=70.3
Q ss_pred CeEEEEcCccCHHHHHHHHhCC---------CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC------
Q 018740 179 GNIIDASCGSGLFSRIFAKSGL---------FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------ 243 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp------ 243 (351)
.+++|+....|.++..+.++.. ...++++|+-+-+ +.+.+.-+++|+....
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------------PI~GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------------PIEGVIQLQGDITSASTAEAII 108 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------------ccCceEEeecccCCHhHHHHHH
Confidence 5899999999999999987621 1139999985521 2578888999997652
Q ss_pred --CCCCceeeEEeccc-----cccCCCh------HHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 --FASSSIDAVHAGAA-----IHCWSSP------STGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 --~~~~~fD~V~~~~v-----l~h~~d~------~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
|..+..|+|+|-++ +|.+.+- ..+|.-...+|+|||.|+.-.+..+
T Consensus 109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 55678999999765 3444321 2556677789999999987655443
No 278
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.18 E-value=0.066 Score=46.20 Aligned_cols=118 Identities=21% Similarity=0.236 Sum_probs=68.8
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHhhhC------------------
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQES------------------ 225 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~------------------ 225 (351)
+++...++....+-++.|-.||.|+++-.+.-.. .-..|+|.|+++.+++.|++++...+
T Consensus 40 ~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~ 119 (246)
T PF11599_consen 40 FQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQY 119 (246)
T ss_dssp HHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHc
Confidence 4444555555556799999999999887665432 12489999999999999999874322
Q ss_pred ---------------------CCCCCCeEEEEecCCCCC-----CCCCceeeEEecccc---ccCCC-----h-HHHHHH
Q 018740 226 ---------------------NFPKENFLLVRADISRLP-----FASSSIDAVHAGAAI---HCWSS-----P-STGVAE 270 (351)
Q Consensus 226 ---------------------g~~~~~i~~~~~d~~~lp-----~~~~~fD~V~~~~vl---~h~~d-----~-~~~l~~ 270 (351)
..........++|+.+.. ......|+|+.---. -+|.. | .++|..
T Consensus 120 ~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~ 199 (246)
T PF11599_consen 120 GKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNS 199 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHH
Confidence 112445778888887621 112336999864322 33333 2 388999
Q ss_pred HHhcccCCcEEEE
Q 018740 271 ISRVLRPGGVFVG 283 (351)
Q Consensus 271 i~~~LkpgG~li~ 283 (351)
++.+|.+++++.+
T Consensus 200 l~~vLp~~sVV~v 212 (246)
T PF11599_consen 200 LAPVLPERSVVAV 212 (246)
T ss_dssp HHCCS-TT-EEEE
T ss_pred HHhhCCCCcEEEE
Confidence 9999955566655
No 279
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.97 E-value=0.07 Score=47.50 Aligned_cols=111 Identities=14% Similarity=0.026 Sum_probs=69.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh---hCCCCCCCeEEEEecCCCC---CCCCCc-e
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ESNFPKENFLLVRADISRL---PFASSS-I 249 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~g~~~~~i~~~~~d~~~l---p~~~~~-f 249 (351)
....||++|+|+|.-+..++... ..+|+-.|+..-. ...+.+... .-+..+..+.....+-... .+.... +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 35579999999997777666643 3488888875432 222222111 1000112333333333222 122233 9
Q ss_pred eeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
|+|++..++.+-..+..++.-++..|..+|.+++.++-.+
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999999988889999999999999997777776543
No 280
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.90 E-value=0.028 Score=50.76 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=80.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CCCCCCCeEEEEecCCCC--CCCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL--PFASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g~~~~~i~~~~~d~~~l--p~~~~~fD~V~ 253 (351)
..+.+|-||.|.|...+...+.-...++.-+|++...++..++.+... .|...+++.+..+|-..+ ....++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 467999999999999998888744558899999999999999887653 355578899999986443 13368899999
Q ss_pred eccccccCCCh---------HHHHHHHHhcccCCcEEEEEe
Q 018740 254 AGAAIHCWSSP---------STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 254 ~~~vl~h~~d~---------~~~l~~i~~~LkpgG~li~~~ 285 (351)
.-. .|| ...+.-+.+.||+||++....
T Consensus 201 ~ds-----sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 201 TDS-----SDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred Eec-----CCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 532 232 356788999999999998865
No 281
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.81 E-value=0.24 Score=46.91 Aligned_cols=99 Identities=23% Similarity=0.257 Sum_probs=68.8
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC-C-----CCCCC-C
Q 018740 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS-R-----LPFAS-S 247 (351)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~-~-----lp~~~-~ 247 (351)
.++.+|+=+|||. |.++..+++.....+|+.+|.++.-++.|++.... ..+..... . ..... .
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------~~~~~~~~~~~~~~~~~~t~g~ 237 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------DVVVNPSEDDAGAEILELTGGR 237 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------eEeecCccccHHHHHHHHhCCC
Confidence 3345999999998 98888888876567999999999999999985322 11111111 0 01112 3
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.+|+++-.-. -..++..+.+.++|||.+.+......
T Consensus 238 g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 238 GADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 6999984333 23468899999999999988766543
No 282
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.79 E-value=0.045 Score=52.17 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=75.3
Q ss_pred CCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CCCCceeeEEec
Q 018740 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHAG 255 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~ 255 (351)
+.+|||.=+|+|.=+..++.. ....+|+.-|+|+++++..+++++.+ +.....+++...|+..+- .....||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N-~~~~~~~~v~~~DAn~ll~~~~~~fD~ID-- 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN-GLEDERIEVSNMDANVLLYSRQERFDVID-- 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC-T-SGCCEEEEES-HHHHHCHSTT-EEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc-cccCceEEEehhhHHHHhhhccccCCEEE--
Confidence 458999999999977777766 33458999999999999999998877 432335888888886542 2467899997
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
|.-+..|..+|..+.+.++.||.|.++.-.
T Consensus 127 --lDPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 127 --LDPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp --E--SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred --eCCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 355567889999999999999999997654
No 283
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.79 E-value=0.13 Score=50.89 Aligned_cols=101 Identities=23% Similarity=0.256 Sum_probs=69.0
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-----------C
Q 018740 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----------L 242 (351)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-----------l 242 (351)
..++.+|+=+|+|. |..+...++.. +..|+++|.+++.++.+++. ..+++..|..+ +
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl----------GA~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM----------GAEFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEEeccccccccccchhhhc
Confidence 34688999999997 77777777663 34899999999999988873 22222221111 0
Q ss_pred C----------CCC--CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 243 P----------FAS--SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 243 p----------~~~--~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
. +.+ ..+|+|+.......-+.|..+.+++.+.+||||+++....
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 011 3589999776654444565556999999999999887654
No 284
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.74 E-value=0.035 Score=49.93 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=36.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHhh
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQQ 223 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~~~~a~~~~~~ 223 (351)
..+|+|+|+|+|.++..+.+... ..+++-+|+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 46999999999999988877522 35899999999999888888765
No 285
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.73 E-value=0.13 Score=47.96 Aligned_cols=115 Identities=20% Similarity=0.193 Sum_probs=80.0
Q ss_pred ccCCCCCCeEEEEcCccCHHHHHHHHhCCC----CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----
Q 018740 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLF----SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---- 243 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---- 243 (351)
.|+..++.+|||+....|.=+..+.+.... ..|++=|.++.-+...+..+... ..+++.+...|+...|
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l---~~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL---PSPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc---CCcceeeecccceecccccc
Confidence 356678999999999999988888776542 27999999988777777666433 2455555555554433
Q ss_pred -----CCCCceeeEEec------cccccCCC-----------------hHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 -----FASSSIDAVHAG------AAIHCWSS-----------------PSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 -----~~~~~fD~V~~~------~vl~h~~d-----------------~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.....||-|++- .++.+-++ ...+|.+-.++||+||.++.+|-...
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 123469999863 22333222 12678889999999999999887653
No 286
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.71 E-value=0.015 Score=44.46 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=28.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCC
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 210 (351)
.+....+|||||+|.+...|...|. .-.|+|.-
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R 89 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR 89 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence 3456799999999999999999988 77899973
No 287
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=95.63 E-value=0.0053 Score=37.60 Aligned_cols=35 Identities=26% Similarity=0.733 Sum_probs=24.2
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
...||.|+..+...... + ......++|+.|++.+.
T Consensus 2 ~i~CP~C~~~f~v~~~~-l---~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDK-L---PAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EEECCCCCceEEcCHHH-c---ccCCcEEECCCCCcEee
Confidence 57899999977655411 0 02346899999998764
No 288
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.62 E-value=0.041 Score=48.49 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=53.0
Q ss_pred HHHhccCCCCC--CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCC------CCeEEEEecC
Q 018740 168 LMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK------ENFLLVRADI 239 (351)
Q Consensus 168 ~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~------~~i~~~~~d~ 239 (351)
.+.+..+..++ .+|||.-+|-|.-+..++..|. +|+++|-||-+....++-+........ .+++++.+|.
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 45555554444 4899999999999999888776 999999999776665543332210011 3799999998
Q ss_pred CC-CCCCCCceeeEEecccccc
Q 018740 240 SR-LPFASSSIDAVHAGAAIHC 260 (351)
Q Consensus 240 ~~-lp~~~~~fD~V~~~~vl~h 260 (351)
.+ ++.++.+||+|.+--.+.+
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 76 4555789999998666554
No 289
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.43 E-value=0.012 Score=48.38 Aligned_cols=100 Identities=15% Similarity=0.253 Sum_probs=62.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHH-HHHHHHhhhCCCCCCCeE-EEEecCC-CCCCCCCceeeEEe
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK-QCYEFVQQESNFPKENFL-LVRADIS-RLPFASSSIDAVHA 254 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~-~a~~~~~~~~g~~~~~i~-~~~~d~~-~lp~~~~~fD~V~~ 254 (351)
+++.+-+|+..-..=....+.| ..++.-+|.++--++ ..++ ++. +...|+. +..--.++||.+.|
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~~~~~d-----------r~ssi~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQEEFRD-----------RLSSILPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccCccccc-----------ccccccHHHHHHHHHHhhccchhhhe
Confidence 4577788887655544444555 347888887642111 1111 111 1112221 11112467999999
Q ss_pred ccccccCC-----Ch------HHHHHHHHhcccCCcEEEEEeeccC
Q 018740 255 GAAIHCWS-----SP------STGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 255 ~~vl~h~~-----d~------~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
..++||+. || .+.+.++.++|||||.+++..|...
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred echhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 99999982 33 3778899999999999999999864
No 290
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.23 Score=46.44 Aligned_cols=105 Identities=21% Similarity=0.229 Sum_probs=80.8
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC-CCceeeEEecc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGA 256 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~ 256 (351)
..+|||.=+|+|.=+..++...+..+|+.-|+||.+++.+++++..+ ...+...+..|+..+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---~~~~~~v~n~DAN~lm~~~~~~fd~ID--- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---SGEDAEVINKDANALLHELHRAFDVID--- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---CcccceeecchHHHHHHhcCCCccEEe---
Confidence 56999999999998888777765558999999999999999998876 234555666676544221 36688875
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
+.-+..|..++..+.+.++.||++-++.-...
T Consensus 127 -iDPFGSPaPFlDaA~~s~~~~G~l~vTATD~a 158 (380)
T COG1867 127 -IDPFGSPAPFLDAALRSVRRGGLLCVTATDTA 158 (380)
T ss_pred -cCCCCCCchHHHHHHHHhhcCCEEEEEecccc
Confidence 35556788999999999999999988765543
No 291
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.42 E-value=0.21 Score=47.76 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=69.7
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-----C-CC-
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----L-PF- 244 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-----l-p~- 244 (351)
....++.+||.+|+|. |..+..+++.....+++++|.++...+.+++.. ....+...-.+ + .+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~~ 250 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALRELT 250 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHHc
Confidence 3455678999999987 888888888753336999999999988888741 11222111110 1 11
Q ss_pred CCCceeeEEeccc-----------cccC----CChHHHHHHHHhcccCCcEEEEEee
Q 018740 245 ASSSIDAVHAGAA-----------IHCW----SSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 ~~~~fD~V~~~~v-----------l~h~----~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
....+|+|+-.-. +.|. .++...+.++.+.|+++|.++....
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 2236898886421 1222 4566788999999999999988653
No 292
>PRK11524 putative methyltransferase; Provisional
Probab=95.33 E-value=0.067 Score=49.03 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=50.0
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 223 (351)
|..+.+.+..... .+++.|||-=+|+|..+.+..+.+. +.+|+|++++.++.|++++..
T Consensus 194 P~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence 4666677666554 3588999999999999999998887 999999999999999999754
No 293
>PRK00420 hypothetical protein; Validated
Probab=95.22 E-value=0.011 Score=45.78 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=23.6
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
-.||.||.+|.... .+..+|+.||..+...
T Consensus 24 ~~CP~Cg~pLf~lk----------~g~~~Cp~Cg~~~~v~ 53 (112)
T PRK00420 24 KHCPVCGLPLFELK----------DGEVVCPVHGKVYIVK 53 (112)
T ss_pred CCCCCCCCcceecC----------CCceECCCCCCeeeec
Confidence 56999999987622 3789999999877654
No 294
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.17 E-value=0.1 Score=50.85 Aligned_cols=102 Identities=11% Similarity=0.172 Sum_probs=75.9
Q ss_pred CeEEEEcCccCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHH-HhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 179 GNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEF-VQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~-~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
.+|+-+|.|.|-+.....+. ....+++++|-+|+++...+.+ ...+ ..++.++..|+..++.+..+.|+++
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W----~~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW----DNRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh----cCeeEEEeccccccCCchhhccchH
Confidence 46899999999887665543 2345889999999998877663 3333 5789999999999986668899988
Q ss_pred eccccccCCCh---HHHHHHHHhcccCCcEEEEEe
Q 018740 254 AGAAIHCWSSP---STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 254 ~~~vl~h~~d~---~~~l~~i~~~LkpgG~li~~~ 285 (351)
+ ..|..+.|- ...|..+-+.|||+|+.|=..
T Consensus 445 S-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 445 S-ELLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred H-HhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 5 333444332 366899999999999876543
No 295
>PHA01634 hypothetical protein
Probab=95.14 E-value=0.17 Score=39.95 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=40.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
.+++|+|||.+-|..+..++-+|. ..|+++++++...+..++..+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhh
Confidence 467999999999999999998884 58999999999999998866543
No 296
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.05 E-value=0.12 Score=53.36 Aligned_cols=127 Identities=17% Similarity=0.073 Sum_probs=75.0
Q ss_pred CCeEEEEcCccCHHHHHHHHhC-------C-----CCeEEEEeCCH---HHHHHHH-----------HHHhhh----CCC
Q 018740 178 GGNIIDASCGSGLFSRIFAKSG-------L-----FSLVVALDYSE---NMLKQCY-----------EFVQQE----SNF 227 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~gvD~s~---~~~~~a~-----------~~~~~~----~g~ 227 (351)
.-+|+|+|=|+|.+.....+.. + ..+++++|..| ..+..+. +..+.. .|.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999665554322 2 24788999643 2222222 111111 010
Q ss_pred -------CCCCeEEEEecCCC-CCCCCCceeeEEecc-ccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcch
Q 018740 228 -------PKENFLLVRADISR-LPFASSSIDAVHAGA-AIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296 (351)
Q Consensus 228 -------~~~~i~~~~~d~~~-lp~~~~~fD~V~~~~-vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~ 296 (351)
..-.+++..+|+.+ ++--...+|+++.-. .-.+-|+. ..+++.++++++|||.+.-.+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t----------- 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT----------- 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee-----------
Confidence 01245566777754 232235699998643 22222222 488999999999999887321
Q ss_pred HHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 297 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
+...++.-|.++||.+.+.
T Consensus 207 -------------------~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 207 -------------------SAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred -------------------hHHHHHHHHHHcCCeeeec
Confidence 3346778888888887653
No 297
>PRK13699 putative methylase; Provisional
Probab=94.98 E-value=0.11 Score=45.84 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=50.9
Q ss_pred CCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
.-|..+.+.+..... .++..|||-=||+|..+.+..+.+. +.+|+|+++...+.+.+++...
T Consensus 147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHHH
Confidence 345666666665544 3588999999999999999988877 9999999999999999988664
No 298
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.95 E-value=0.078 Score=46.32 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=43.6
Q ss_pred CCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 018740 160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (351)
Q Consensus 160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 219 (351)
.-|..+++.+..... .++..|||.=||+|..+.+..+.+. +.+|+|+++..++.|++
T Consensus 175 ~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence 345667777776654 3588999999999999999999887 99999999999998874
No 299
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.65 E-value=0.17 Score=44.52 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=70.3
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---CCCCc
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS 248 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~~ 248 (351)
+...++.+||-+|.++|.......+- +|+.-|++++.|+..=+..-..++. ..||--+.-|+.... ..-+-
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----RtNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RTNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cCCceeeeccCCCchheeeeeee
Confidence 34567999999999999988888876 7888999999997544333332222 367777777875431 11234
Q ss_pred eeeEEeccccccCCChH---HHHHHHHhcccCCcEEEEEee
Q 018740 249 IDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~---~~l~~i~~~LkpgG~li~~~~ 286 (351)
.|+|++ .++.|+ .+.-+..-.||+||.++++.-
T Consensus 227 VDvIFa-----Dvaqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 227 VDVIFA-----DVAQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred EEEEec-----cCCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 666664 333343 334567788999999988654
No 300
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=94.59 E-value=0.017 Score=35.06 Aligned_cols=34 Identities=18% Similarity=0.681 Sum_probs=22.9
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
.+.||.|+..+...+.. + . .....++|++|++.+
T Consensus 2 ~i~Cp~C~~~y~i~d~~-i--p-~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEK-I--P-PKGRKVRCSKCGHVF 35 (36)
T ss_pred EEECCCCCCEEeCCHHH-C--C-CCCcEEECCCCCCEe
Confidence 57899999976655411 0 0 223468999999875
No 301
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.57 E-value=0.58 Score=43.13 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=99.7
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (351)
+.+...+... ...|+-+|||-=. +...-..+ ...|+-+|. |+.++.=++.+++..+.......++..|+.+-.
T Consensus 83 ~~~~~~~~~g-~~qvViLgaGLDT--RayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~ 158 (297)
T COG3315 83 DFVRAALDAG-IRQVVILGAGLDT--RAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWP 158 (297)
T ss_pred HHHHHHHHhc-ccEEEEecccccc--ceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchH
Confidence 3445555554 5689999998533 33322223 345666665 677777667777663333347999999997422
Q ss_pred -------CCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCC-CcchHHHHHHH-H-Hh-hccC
Q 018740 244 -------FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQ-N-MM-QISG 310 (351)
Q Consensus 244 -------~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~-~~~~~~~~~~~-~-~~-~~~~ 310 (351)
+..+.--++++-+++.+++.. .++|..|...+.||-.++.......... ........... . .. ....
T Consensus 159 ~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 238 (297)
T COG3315 159 QALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGEL 238 (297)
T ss_pred HHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccc
Confidence 234455688889999999754 4889999999999888887764211110 11000000000 0 00 0112
Q ss_pred CccCCCHHHHHHHHHHCCCeEEEE
Q 018740 311 SYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 311 ~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
.+...+..+++.++.+.||.....
T Consensus 239 ~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 239 VYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred eeccCCHHHHHHHHHhcCEEEEec
Confidence 344567899999999999987765
No 302
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=94.55 E-value=0.075 Score=51.01 Aligned_cols=112 Identities=20% Similarity=0.094 Sum_probs=69.7
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHH--hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-cC--CCCCCC-CC
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAK--SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DI--SRLPFA-SS 247 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d~--~~lp~~-~~ 247 (351)
.......++|+|.|.|.-..++.. ..-...++.||.|..|.......+..... .... ++.. -+ ..+|.. .+
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~--~g~~-~v~~~~~~r~~~pi~~~~ 273 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH--IGEP-IVRKLVFHRQRLPIDIKN 273 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh--cCch-hccccchhcccCCCCccc
Confidence 334456889999887654333332 23234789999999999998877654100 1111 1111 11 223433 45
Q ss_pred ceeeEEeccccccCCChH---HHHHHHH-hcccCCcEEEEEeecc
Q 018740 248 SIDAVHAGAAIHCWSSPS---TGVAEIS-RVLRPGGVFVGTTYIV 288 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~---~~l~~i~-~~LkpgG~li~~~~~~ 288 (351)
.||+|++.+.++++.++. ...+++. +..++|+.+++.....
T Consensus 274 ~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 274 GYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred ceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 599999999999998764 3344444 4667888888877653
No 303
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.52 E-value=0.3 Score=45.87 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=61.2
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCC-eEEEEecCCCCCCCCCceeeE
Q 018740 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISRLPFASSSIDAV 252 (351)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~-i~~~~~d~~~lp~~~~~fD~V 252 (351)
..++.+||=+|+|. |.++..+++.....+|+++|.+++-++.+++. | ... +.....++.++....+.+|+|
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-----G--a~~vi~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-----G--ADKLVNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-----C--CcEEecCCcccHHHHhccCCCCCEE
Confidence 33578899899874 66777777664223689999999988888763 1 111 111111122211112358888
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+- ....+ ..++...+.|++||.+++...
T Consensus 240 id-----~~G~~-~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 240 FE-----VSGHP-SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EE-----CCCCH-HHHHHHHHHhhcCCEEEEEcc
Confidence 73 33333 357788899999999988654
No 304
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.40 E-value=0.24 Score=42.01 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-------C
Q 018740 176 VLGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------F 244 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-------~ 244 (351)
..+..|+|+|.-.|..+..++. .|...+|+++|++-..+.-+... .+++.|++++-.+.. .
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~eqi~~~ 139 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIAEQIRRL 139 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHHHHHHHH
Confidence 3456999999998876666554 35456999999987654433322 589999999976642 1
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCC
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP 291 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~ 291 (351)
..+.--+.++...-||.....+.|+-..++|.-|-++++.+.+.++.
T Consensus 140 ~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 140 KNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred hcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCC
Confidence 22323344455565665555677788889999999999988877654
No 305
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.20 E-value=0.19 Score=43.92 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=61.0
Q ss_pred CCCcHHHHHHHHhccCC------CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe
Q 018740 159 FPGPEKEFELMKGYLKP------VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232 (351)
Q Consensus 159 ~~~~~~~~~~l~~~l~~------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i 232 (351)
.++....+..+.++|.. .+.-++||||.|.--.-..+--+-..++.+|.|+++..++.|+..+..+.+. ...+
T Consensus 54 vPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l-~~~I 132 (292)
T COG3129 54 VPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL-ERAI 132 (292)
T ss_pred CCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch-hhhe
Confidence 34445555566665532 2345789999876433222222222349999999999999999988776222 2334
Q ss_pred EEEEecC-CC----CCCCCCceeeEEecccccc
Q 018740 233 LLVRADI-SR----LPFASSSIDAVHAGAAIHC 260 (351)
Q Consensus 233 ~~~~~d~-~~----lp~~~~~fD~V~~~~vl~h 260 (351)
++....- .. +--.++.||+++|+--+|-
T Consensus 133 ~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 133 RLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred eEEeccCccccccccccccceeeeEecCCCcch
Confidence 4443322 11 1123678999999987764
No 306
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=94.15 E-value=0.02 Score=34.19 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=16.1
Q ss_pred eCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
-||.||+++..... +......+.|+.|+...
T Consensus 2 fC~~CG~~l~~~ip-----~gd~r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 2 FCPQCGGPLERRIP-----EGDDRERLVCPACGFIH 32 (34)
T ss_dssp B-TTT--B-EEE-------TT-SS-EEEETTTTEEE
T ss_pred ccccccChhhhhcC-----CCCCccceECCCCCCEE
Confidence 39999999876542 11234678899998653
No 307
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.13 E-value=1.3 Score=39.22 Aligned_cols=106 Identities=19% Similarity=0.281 Sum_probs=71.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC----CCCCCCc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSS 248 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~----lp~~~~~ 248 (351)
.+...+|+|+|+-.-++.+.+. +...+++.+|+|...++...+.+... .....+.-+++|.+. +| ..++
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~--y~~l~v~~l~~~~~~~La~~~-~~~~ 154 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE--YPGLEVNALCGDYELALAELP-RGGR 154 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh--CCCCeEeehhhhHHHHHhccc-CCCe
Confidence 4668999999998877666654 33468999999999888776655554 123345556677642 33 2222
Q ss_pred eeeEEeccccccCC-C-hHHHHHHHHhcccCCcEEEEEe
Q 018740 249 IDAVHAGAAIHCWS-S-PSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 249 fD~V~~~~vl~h~~-d-~~~~l~~i~~~LkpgG~li~~~ 285 (351)
==.++....|-.+. + -..+|..+...|+||-.+++-+
T Consensus 155 Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 155 RLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 22333445566553 2 3488999999999999988855
No 308
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=94.12 E-value=0.024 Score=44.84 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=21.3
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (351)
..||.||.||+... +.+.|+.|++.
T Consensus 29 ~hCp~Cg~PLF~Kd-----------G~v~CPvC~~~ 53 (131)
T COG1645 29 KHCPKCGTPLFRKD-----------GEVFCPVCGYR 53 (131)
T ss_pred hhCcccCCcceeeC-----------CeEECCCCCce
Confidence 56999999998854 89999999953
No 309
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.11 E-value=0.46 Score=43.72 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=70.2
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC--CCC------CC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRL------PF 244 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~--~~l------p~ 244 (351)
...++.+||-+|+|. |..+...++..--.+|+.+|+++.-++.|++. .. ..+....... ..+ -.
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga------~~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GA------TVTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CC------eEEeeccccccHHHHHHHHHhhc
Confidence 445688999999997 88888788875567999999999999999983 21 1121111111 110 12
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
....+|+.+-+..++ ..++.....+++||.+++..+..+
T Consensus 239 g~~~~d~~~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 239 GKKQPDVTFDCSGAE------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred cccCCCeEEEccCch------HHHHHHHHHhccCCEEEEeccCCC
Confidence 234588888665544 346667789999999888776543
No 310
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.09 E-value=0.084 Score=41.94 Aligned_cols=88 Identities=23% Similarity=0.276 Sum_probs=56.3
Q ss_pred CCeEEEEecCCC-CCCCCCceeeEEeccccccCCCh----HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHH
Q 018740 230 ENFLLVRADISR-LPFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN 304 (351)
Q Consensus 230 ~~i~~~~~d~~~-lp~~~~~fD~V~~~~vl~h~~d~----~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
..+.+..+|+.+ ++--...+|+|+... +---.+| ..++++++++++|||.+.- +.
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~T--ys----------------- 90 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLAT--YS----------------- 90 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEE--S------------------
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEE--ee-----------------
Confidence 456777788754 332237799999653 2222344 4889999999999997764 21
Q ss_pred HhhccCCccCCCHHHHHHHHHHCCCeEEEEEec-CeEEEEEEecC
Q 018740 305 MMQISGSYTFLSEREIEDLCRACGLVDFKCTRN-RGFVMFTATKP 348 (351)
Q Consensus 305 ~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~-g~~~~~~a~kp 348 (351)
+...++..|.++||.+.+.... +..-+..|.||
T Consensus 91 -----------~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 91 -----------SAGAVRRALQQAGFEVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp ------------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred -----------chHHHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence 2346889999999998875543 46677777775
No 311
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=93.85 E-value=0.07 Score=48.05 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=62.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-------HHhhhCCCCCCCeEEEEecCCCCCC-CCC-
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE-------FVQQESNFPKENFLLVRADISRLPF-ASS- 247 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~-------~~~~~~g~~~~~i~~~~~d~~~lp~-~~~- 247 (351)
.+++|||+|||.|.-...+...+. ..++..|++...++.-.- .+....+....-......++.+.-+ ..+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 478999999999998888777762 478888888776632110 0000000000111111121111111 123
Q ss_pred -ceeeEEeccccccCCChHHH-HHHHHhcccCCcEEEEE
Q 018740 248 -SIDAVHAGAAIHCWSSPSTG-VAEISRVLRPGGVFVGT 284 (351)
Q Consensus 248 -~fD~V~~~~vl~h~~d~~~~-l~~i~~~LkpgG~li~~ 284 (351)
.||+|.++..+.-....... +......++++|+++..
T Consensus 195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 78999998888776655555 55666788889987763
No 312
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=93.70 E-value=0.036 Score=35.16 Aligned_cols=29 Identities=21% Similarity=0.491 Sum_probs=19.9
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
+.||.|++...... ...+.+.|+.||.+.
T Consensus 1 m~Cp~Cg~~~~~~D--------~~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 1 MKCPNCGSKEIVFD--------PERGELVCPNCGLVL 29 (43)
T ss_dssp ESBTTTSSSEEEEE--------TTTTEEEETTT-BBE
T ss_pred CCCcCCcCCceEEc--------CCCCeEECCCCCCEe
Confidence 47999999753222 345788999998664
No 313
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=93.66 E-value=0.16 Score=48.37 Aligned_cols=73 Identities=16% Similarity=0.283 Sum_probs=53.8
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC-CCceeeEEe
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHA 254 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~~fD~V~~ 254 (351)
..|||||.|||.++....+.|. ..|++++.-..|.+.|++....+ |. .++|.++.---.++... ....|+++.
T Consensus 68 v~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kn-g~-SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKN-GM-SDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcC-CC-ccceeeeccccceeeecCcchhhhhhH
Confidence 3689999999999999999984 47999999999999999887765 33 67788776554443211 223555543
No 314
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.63 E-value=0.23 Score=45.31 Aligned_cols=68 Identities=24% Similarity=0.325 Sum_probs=52.2
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC--CCceeeEEeccc
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAA 257 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~v 257 (351)
+++|+-||.|.+...+.+.|. ..+.++|+++.+++..+.+. +.. .+.+|+.++... ...+|+++...-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~--------~~~-~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANF--------PNK-LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhC--------CCC-CccCccccCchhhcCCCCCEEEeCCC
Confidence 689999999999999998874 36789999999998888763 222 566787776432 356999997643
No 315
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=93.59 E-value=0.033 Score=34.22 Aligned_cols=35 Identities=23% Similarity=0.675 Sum_probs=22.4
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
.+.||.|+..+...... . . .....++|++|+..+.
T Consensus 2 ~~~CP~C~~~~~v~~~~-~--~-~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQ-L--G-ANGGKVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEEeCHHH-c--C-CCCCEEECCCCCCEEE
Confidence 47899999976554311 0 0 1123689999998653
No 316
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.56 E-value=0.35 Score=47.81 Aligned_cols=98 Identities=19% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-------------
Q 018740 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR------------- 241 (351)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~------------- 241 (351)
.++.++|=+|+|. |..+..+++.. +..|+.+|.++..++.+++. ..+++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l----------Ga~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----------GAEFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccccceeecC
Confidence 3568999999997 66666666552 34899999999988877752 12222222211
Q ss_pred ----------CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 242 ----------LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 242 ----------lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
++-.-..+|+|+..-.+.--+.|.-..+++.+.+|||++++-.
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 1111246999988776666566766788899999999987643
No 317
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.36 E-value=0.12 Score=47.65 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=63.1
Q ss_pred HhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHH-------HHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-------YEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a-------~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+......+|+.|+|-=-|||.++...+..|. -|+|.||+-.+++.. +.++++. |....-+.++.+|..+.
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQY-g~~~~fldvl~~D~sn~ 277 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQY-GSSSQFLDVLTADFSNP 277 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHh-CCcchhhheeeecccCc
Confidence 3444567799999999999999998888876 999999999888732 3455554 32234577889999888
Q ss_pred CCCC-CceeeEEec
Q 018740 243 PFAS-SSIDAVHAG 255 (351)
Q Consensus 243 p~~~-~~fD~V~~~ 255 (351)
|+.. ..||.|+|-
T Consensus 278 ~~rsn~~fDaIvcD 291 (421)
T KOG2671|consen 278 PLRSNLKFDAIVCD 291 (421)
T ss_pred chhhcceeeEEEeC
Confidence 7654 579999973
No 318
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=93.12 E-value=0.072 Score=37.76 Aligned_cols=50 Identities=14% Similarity=0.310 Sum_probs=34.6
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccc--cccccccccCceeeecccC
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~g~~~~~~~~ 121 (351)
++.||.||..-........+.. ......+|. .||+.|...+.+...+...
T Consensus 1 mm~CP~Cg~~a~irtSr~~s~~-~~~~Y~qC~N~eCg~tF~t~es~s~tis~p 52 (72)
T PRK09678 1 MFHCPLCQHAAHARTSRYITDT-TKERYHQCQNVNCSATFITYESVQRYIVKP 52 (72)
T ss_pred CccCCCCCCccEEEEChhcChh-hheeeeecCCCCCCCEEEEEEEEEEEEcCC
Confidence 4789999997644432223222 556677898 8999999887777776543
No 319
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.93 E-value=0.048 Score=38.58 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=26.3
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccccccccCce
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH 114 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~ 114 (351)
++.||+|+-.+....+..+ .+-.|+.|+-++..+...
T Consensus 1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDrGEL 37 (88)
T COG3809 1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDRGEL 37 (88)
T ss_pred CcccCcCCceeeeeeecCc-------eeeeCCccccEeecchhH
Confidence 3679999998876654322 455799999888776433
No 320
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.92 E-value=1.3 Score=45.70 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=64.5
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-HHhhhCCCCCCCeEEEEecC---CCCCCCCCceeeEEe
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE-FVQQESNFPKENFLLVRADI---SRLPFASSSIDAVHA 254 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~g~~~~~i~~~~~d~---~~lp~~~~~fD~V~~ 254 (351)
..+--.|.||=.....+.+.+|+.+++-+|-+...-+.+-+ .+... ......++.+.= ....|++=..=.|+.
T Consensus 484 ~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~---~~ge~dILiGTQmiaKG~~fp~vtLVgvl~ 560 (730)
T COG1198 484 EHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQF---ANGEADILIGTQMIAKGHDFPNVTLVGVLD 560 (730)
T ss_pred CeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHH---hCCCCCeeecchhhhcCCCcccceEEEEEe
Confidence 36888888998999999999999999999987655333222 22222 122334444431 223444444445566
Q ss_pred ccccccCCChH---HHHHHHHhcc---c---CCcEEEEEeeccCCC
Q 018740 255 GAAIHCWSSPS---TGVAEISRVL---R---PGGVFVGTTYIVDGP 291 (351)
Q Consensus 255 ~~vl~h~~d~~---~~l~~i~~~L---k---pgG~li~~~~~~~~~ 291 (351)
.+..-+.+|.. ++++-+..+. . ..|.+++.|...+.+
T Consensus 561 aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp 606 (730)
T COG1198 561 ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHP 606 (730)
T ss_pred chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcH
Confidence 66666677753 3333333332 1 346677788876643
No 321
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=92.90 E-value=0.29 Score=44.93 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=72.4
Q ss_pred CeEEEEcCccCHHHHHHHHhC--------------------CCCeEEEEeCCHH--HHHHHHHHHhhh------------
Q 018740 179 GNIIDASCGSGLFSRIFAKSG--------------------LFSLVVALDYSEN--MLKQCYEFVQQE------------ 224 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~--------------------~~~~v~gvD~s~~--~~~~a~~~~~~~------------ 224 (351)
.+||-||.|.|.=..+++... +...++.+|+.+- .+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999987554444332 1148999999863 333333332221
Q ss_pred --CCCCCCCeEEEEecCCCCCCCC-------CceeeEEecccccc-----CCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 225 --SNFPKENFLLVRADISRLPFAS-------SSIDAVHAGAAIHC-----WSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 225 --~g~~~~~i~~~~~d~~~lp~~~-------~~fD~V~~~~vl~h-----~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.....-++.|.+.|+..+..++ ...|+|+..+.+.- ++.-.++|..+...++||..|++.+...
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 0111346888999987765322 35788888877643 3445699999999999999998877544
No 322
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.81 E-value=0.92 Score=42.57 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=58.6
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeE
Q 018740 175 PVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252 (351)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V 252 (351)
..++.+||=+|+|. |.++..+++. ....+|+++|.++.-++.+++ +. .. ... .++. ....+|+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~--------~~-~~~---~~~~-~~~g~d~v 226 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD--------ET-YLI---DDIP-EDLAVDHA 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC--------ce-eeh---hhhh-hccCCcEE
Confidence 35688999999875 6666666654 223489999999887777764 11 11 111 1111 11248888
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+-.-.- ..-...+....+.|++||.+++...
T Consensus 227 iD~~G~---~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 227 FECVGG---RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred EECCCC---CccHHHHHHHHHhCcCCcEEEEEee
Confidence 732210 0123468888999999999987653
No 323
>PHA00626 hypothetical protein
Probab=92.79 E-value=0.064 Score=35.42 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=21.6
Q ss_pred eeCCCCCCC-cccccCCCcccccccCCccccccccccccc
Q 018740 72 LACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 72 l~CP~C~~~-l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
+.||.||+. ....+. -....+.+.|+.|+..|..
T Consensus 1 m~CP~CGS~~Ivrcg~-----cr~~snrYkCkdCGY~ft~ 35 (59)
T PHA00626 1 MSCPKCGSGNIAKEKT-----MRGWSDDYVCCDCGYNDSK 35 (59)
T ss_pred CCCCCCCCceeeeece-----ecccCcceEcCCCCCeech
Confidence 369999995 332220 0012578999999987753
No 324
>PRK13699 putative methylase; Provisional
Probab=92.78 E-value=0.23 Score=43.87 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=31.9
Q ss_pred EEEEecCCCC--CCCCCceeeEEeccc----ccc-CC----------ChHHHHHHHHhcccCCcEEEE
Q 018740 233 LLVRADISRL--PFASSSIDAVHAGAA----IHC-WS----------SPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 233 ~~~~~d~~~l--p~~~~~fD~V~~~~v----l~h-~~----------d~~~~l~~i~~~LkpgG~li~ 283 (351)
+++.+|..++ .++++++|+|+..-- ..+ .. -....+.+++|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3556666443 456777887776411 010 00 023678999999999998876
No 325
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=92.41 E-value=0.075 Score=35.39 Aligned_cols=33 Identities=18% Similarity=0.458 Sum_probs=23.9
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
.+.||.|+..+..... .....+.|+.||..+-.
T Consensus 2 ~~~CP~CG~~iev~~~-------~~GeiV~Cp~CGaeleV 34 (54)
T TIGR01206 2 QFECPDCGAEIELENP-------ELGELVICDECGAELEV 34 (54)
T ss_pred ccCCCCCCCEEecCCC-------ccCCEEeCCCCCCEEEE
Confidence 4689999998766541 12457899999987654
No 326
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=92.29 E-value=0.086 Score=29.44 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=18.1
Q ss_pred eCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
.||.|+..... ..-.|+.||+.|.
T Consensus 2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE-------------SAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence 59999986543 4578999998764
No 327
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.19 E-value=0.69 Score=36.47 Aligned_cols=86 Identities=27% Similarity=0.308 Sum_probs=58.1
Q ss_pred ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-----C-CCCCceeeEEecccccc
Q 018740 187 GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-FASSSIDAVHAGAAIHC 260 (351)
Q Consensus 187 G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-----p-~~~~~fD~V~~~~vl~h 260 (351)
|.|.++..+++... .+|+++|.++.-++.+++. .--.++..+-.++ . .....+|+|+- .
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~---------Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid-----~ 65 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL---------GADHVIDYSDDDFVEQIRELTGGRGVDVVID-----C 65 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT---------TESEEEETTTSSHHHHHHHHTTTSSEEEEEE-----S
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh---------cccccccccccccccccccccccccceEEEE-----e
Confidence 45777888887753 7999999999999888873 1111222222211 1 22357999984 3
Q ss_pred CCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 261 WSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 261 ~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
... ...++....+|+++|.+++.....
T Consensus 66 ~g~-~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 66 VGS-GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSS-HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cCc-HHHHHHHHHHhccCCEEEEEEccC
Confidence 333 457899999999999999977664
No 328
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=92.13 E-value=0.083 Score=38.40 Aligned_cols=32 Identities=22% Similarity=0.566 Sum_probs=23.8
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
+...||.|+.+- ..- +..++..|..|+..+..
T Consensus 34 ~~~~Cp~C~~~~-VkR--------~a~GIW~C~kCg~~fAG 65 (89)
T COG1997 34 AKHVCPFCGRTT-VKR--------IATGIWKCRKCGAKFAG 65 (89)
T ss_pred cCCcCCCCCCcc-eee--------eccCeEEcCCCCCeecc
Confidence 457899999973 222 45689999999987753
No 329
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.10 E-value=2.5 Score=39.07 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=62.0
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC------CCCC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------PFAS 246 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l------p~~~ 246 (351)
...++.+||..|+|. |..+..+++.. +.+|++++.++...+.+++. | +..+..+-... ....
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~-----g-----~~~~~~~~~~~~~~~~~~~~~ 230 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL-----G-----ADEVLNSLDDSPKDKKAAGLG 230 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh-----C-----CCEEEcCCCcCHHHHHHHhcC
Confidence 345577888888763 77777777764 34899999999888877652 1 11111111110 1234
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+.+|+|+.+.. ....++++.+.|+++|.++....
T Consensus 231 ~~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 231 GGFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 56898884321 13468889999999999987644
No 330
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.04 E-value=3.2 Score=36.75 Aligned_cols=96 Identities=24% Similarity=0.330 Sum_probs=59.9
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-----CCCCCce
Q 018740 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----PFASSSI 249 (351)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-----p~~~~~f 249 (351)
.++.+||..|+|. |.....+++.. +.++++++.++...+.+++. | .. .++...-... ....+.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~-----g--~~--~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKEL-----G--AD--HVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh-----C--Cc--eeccCCcCCHHHHHHHhcCCCC
Confidence 5678999999985 66666666653 35999999998877777543 1 01 1111110010 1123569
Q ss_pred eeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
|+|+.... .. ..+..+.+.|+++|.++.....
T Consensus 203 d~vi~~~~-----~~-~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 203 DVVIDAVG-----GP-ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CEEEECCC-----CH-HHHHHHHHhcccCCEEEEEccC
Confidence 99985322 21 4567788899999998876544
No 331
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=91.94 E-value=0.12 Score=33.15 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=22.6
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
..+.||.||..+..... ....+|+.||....
T Consensus 2 ~~y~C~~CG~~~~~~~~---------~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 2 AEYKCARCGREVELDEY---------GTGVRCPYCGYRIL 32 (46)
T ss_pred CEEECCCCCCEEEECCC---------CCceECCCCCCeEE
Confidence 35889999998766541 12789999997543
No 332
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.90 E-value=1.4 Score=41.50 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeC---CHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCcee
Q 018740 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDY---SENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 250 (351)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~---s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD 250 (351)
..++.+||=+|+|. |.++..+++.. ..+|++++. ++.-.+.+++. | ...+.....+..+.. ..+.+|
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~-----G--a~~v~~~~~~~~~~~-~~~~~d 240 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL-----G--ATYVNSSKTPVAEVK-LVGEFD 240 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc-----C--CEEecCCccchhhhh-hcCCCC
Confidence 34577999999875 77777776664 348999986 56666666542 1 111111011111101 124588
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+|+-. ...+ ..+.+..+.|+++|.+++...
T Consensus 241 ~vid~-----~g~~-~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 241 LIIEA-----TGVP-PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred EEEEC-----cCCH-HHHHHHHHHccCCcEEEEEec
Confidence 88843 2222 367888999999999877544
No 333
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=91.70 E-value=0.81 Score=42.85 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=38.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHh----CC----CCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 177 LGGNIIDASCGSGLFSRIFAKS----GL----FSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~----~~----~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
....++|+|.|+|.+...+.+. .| ..++.-+|+|++..+.-++.++..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3458999999999998877664 22 568999999999988888877664
No 334
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.70 E-value=0.094 Score=34.72 Aligned_cols=27 Identities=26% Similarity=0.619 Sum_probs=21.0
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
-.|+.|+.++...+ ..+.|+.|+..|-
T Consensus 6 ~~C~~Cg~~~~~~d-----------DiVvCp~CgapyH 32 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD-----------DIVVCPECGAPYH 32 (54)
T ss_pred ccChhhCCcccCCC-----------CEEECCCCCCccc
Confidence 46999999886554 6889999987664
No 335
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.56 E-value=0.078 Score=40.68 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=24.0
Q ss_pred ccCCccccccccccccccCceeeeccc
Q 018740 94 AAGSSLQCNTCKKTYSGVGTHFDMTAA 120 (351)
Q Consensus 94 ~~~~~~~C~~C~~~~~~~~g~~~~~~~ 120 (351)
+..+.+.|+.||+.|++.+|+++.+-.
T Consensus 94 v~EG~l~CpetG~vfpI~~GIPNMLL~ 120 (124)
T KOG1088|consen 94 VIEGELVCPETGRVFPISDGIPNMLLS 120 (124)
T ss_pred hccceEecCCCCcEeecccCCcccccC
Confidence 567899999999999999999998653
No 336
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.55 E-value=3.2 Score=34.73 Aligned_cols=128 Identities=20% Similarity=0.141 Sum_probs=77.1
Q ss_pred EcCccCHHHHHHHHhCC-CCeEEEEeC--CHHHHHHHH---HHHhhhCCCCCCCeE-EEEecCCCCC----CCCCceeeE
Q 018740 184 ASCGSGLFSRIFAKSGL-FSLVVALDY--SENMLKQCY---EFVQQESNFPKENFL-LVRADISRLP----FASSSIDAV 252 (351)
Q Consensus 184 iGcG~G~~~~~l~~~~~-~~~v~gvD~--s~~~~~~a~---~~~~~~~g~~~~~i~-~~~~d~~~lp----~~~~~fD~V 252 (351)
||=|.=.++..|++... ...+++.-. ..+..+... +++...+ ..++. ....|+.++. ...+.||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~---~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR---ELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh---hcCCccccCCCCCcccccccccCCcCCEE
Confidence 55556667777777744 456665444 333333222 2222221 12222 2445666653 356889999
Q ss_pred Eecccccc--CCC-----------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHH
Q 018740 253 HAGAAIHC--WSS-----------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE 319 (351)
Q Consensus 253 ~~~~vl~h--~~d-----------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 319 (351)
+.++-.-- ..+ ...+++.+..+|+++|.+.++--.... ++...
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p------------------------y~~W~ 135 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP------------------------YDSWN 135 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC------------------------Ccccc
Confidence 97754211 001 137789999999999999987554321 35557
Q ss_pred HHHHHHHCCCeEEEEEecC
Q 018740 320 IEDLCRACGLVDFKCTRNR 338 (351)
Q Consensus 320 l~~ll~~aGf~~v~~~~~g 338 (351)
+.++.+++||..++...+.
T Consensus 136 i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 136 IEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHhcCCEEEEEecCC
Confidence 7889999999998876554
No 337
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.47 E-value=0.26 Score=47.74 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=78.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-------CCCCCCce
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-------LPFASSSI 249 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-------lp~~~~~f 249 (351)
.+..+|-+|-|.|.+...+....+...+++++++|.|++.|++.+.-.. ..+..++..|... ..-.+..|
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCC
Confidence 3568899999999999999988888899999999999999998765431 1223333333211 11245679
Q ss_pred eeEEe----ccccccCCCh------HHHHHHHHhcccCCcEEEEEeeccCC
Q 018740 250 DAVHA----GAAIHCWSSP------STGVAEISRVLRPGGVFVGTTYIVDG 290 (351)
Q Consensus 250 D~V~~----~~vl~h~~d~------~~~l~~i~~~LkpgG~li~~~~~~~~ 290 (351)
|+++. .. .|-+..| ..+|..+...|.|.|.+++.....+.
T Consensus 372 dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 372 DVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred cEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 99884 22 3334333 37788999999999999997776654
No 338
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=91.24 E-value=1.7 Score=39.26 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=69.9
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC---CCceee
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDA 251 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~---~~~fD~ 251 (351)
...++.|+-+| -.-..+.+++-.+-..++..+|+++..+....+.+++. +..+++.+.-|+.+ |+| ...||+
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~---g~~~ie~~~~Dlr~-plpe~~~~kFDv 224 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL---GYNNIEAFVFDLRN-PLPEDLKRKFDV 224 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh---Cccchhheeehhcc-cChHHHHhhCCe
Confidence 33567899999 55566777776666679999999999999998887776 35679999999876 333 368999
Q ss_pred EEeccccccCCChHHH-------HHHHHhcccCC---cEEEEEee
Q 018740 252 VHAGAAIHCWSSPSTG-------VAEISRVLRPG---GVFVGTTY 286 (351)
Q Consensus 252 V~~~~vl~h~~d~~~~-------l~~i~~~Lkpg---G~li~~~~ 286 (351)
.+ .||... +..=...||.- |++.++.-
T Consensus 225 fi--------TDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 225 FI--------TDPPETIKALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred ee--------cCchhhHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence 88 466533 33333455554 66776543
No 339
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=91.24 E-value=0.11 Score=30.63 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=15.9
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
--||.||++..... .....+|+.|+..+
T Consensus 4 rfC~~CG~~t~~~~---------~g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 4 RFCGRCGAPTKPAP---------GGWARRCPSCGHEH 31 (32)
T ss_dssp SB-TTT--BEEE-S---------SSS-EEESSSS-EE
T ss_pred cccCcCCccccCCC---------CcCEeECCCCcCEe
Confidence 35999999876654 23678999998753
No 340
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=91.17 E-value=0.56 Score=41.96 Aligned_cols=116 Identities=19% Similarity=0.234 Sum_probs=61.7
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHH---h-C-CCCeEEEEeCCH--------------------------HHHHHH
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAK---S-G-LFSLVVALDYSE--------------------------NMLKQC 217 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~-~-~~~~v~gvD~s~--------------------------~~~~~a 217 (351)
+...+...-++.|+|.||-.|..+..++. . + ...++++.|--+ ..++..
T Consensus 66 ~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V 145 (248)
T PF05711_consen 66 VEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEV 145 (248)
T ss_dssp HHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHH
T ss_pred HHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHH
Confidence 33344344467999999999976654432 2 1 244788887522 123334
Q ss_pred HHHHhhhCCCCCCCeEEEEecCCC-CC-CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 218 YEFVQQESNFPKENFLLVRADISR-LP-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 218 ~~~~~~~~g~~~~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++++... |...+++.++.+.+.+ +| .+...+-++..-.-++ ..-...|+.++..|.|||++++-++.
T Consensus 146 ~~n~~~~-gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 146 RENFARY-GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp HHCCCCT-TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred HHHHHHc-CCCcccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 4444333 3335789999999854 44 1223333333211111 12358899999999999999996654
No 341
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=90.97 E-value=0.11 Score=30.11 Aligned_cols=26 Identities=31% Similarity=0.837 Sum_probs=14.2
Q ss_pred eCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
.||.|++.....+ ...+.|+.|++.+
T Consensus 4 ~Cp~C~se~~y~D----------~~~~vCp~C~~ew 29 (30)
T PF08274_consen 4 KCPLCGSEYTYED----------GELLVCPECGHEW 29 (30)
T ss_dssp --TTT-----EE-----------SSSEEETTTTEEE
T ss_pred CCCCCCCcceecc----------CCEEeCCcccccC
Confidence 6999999766543 4688999998754
No 342
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.81 E-value=3.3 Score=41.22 Aligned_cols=129 Identities=17% Similarity=0.147 Sum_probs=77.8
Q ss_pred CCCCcHHHHHHHHhccCCC--CCCeEEEEcCccCHHHHHHHHh---C-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCC
Q 018740 158 GFPGPEKEFELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKS---G-LFSLVVALDYSENMLKQCYEFVQQESNFPKEN 231 (351)
Q Consensus 158 ~~~~~~~~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~---~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~ 231 (351)
-++.+....+.+...+.+. ++..|.|.-||+|.++....+. + ....++|-+..+.+...++.++... +.....
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~-~~~~~t 274 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH-NIDYAN 274 (501)
T ss_pred eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc-CCCccc
Confidence 3566777777776666543 4568999999999988765432 1 1246899999999999999875443 211222
Q ss_pred eEEEEecCCC-CCC-CCCceeeEEecccc--------------------cc----CCCh-HHHHHHHHhcccCCcEEEEE
Q 018740 232 FLLVRADISR-LPF-ASSSIDAVHAGAAI--------------------HC----WSSP-STGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 232 i~~~~~d~~~-lp~-~~~~fD~V~~~~vl--------------------~h----~~d~-~~~l~~i~~~LkpgG~li~~ 284 (351)
.....+|-.. ..+ ....||.|+++--+ .| ..+. ..++..+..+|++||...+.
T Consensus 275 ~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 275 FNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred cCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 2222233211 111 13457776644211 12 1112 36788888999999987665
Q ss_pred eec
Q 018740 285 TYI 287 (351)
Q Consensus 285 ~~~ 287 (351)
-+.
T Consensus 355 ~~~ 357 (501)
T TIGR00497 355 CFP 357 (501)
T ss_pred ecC
Confidence 553
No 343
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=90.80 E-value=0.13 Score=42.31 Aligned_cols=40 Identities=25% Similarity=0.513 Sum_probs=22.6
Q ss_pred eeCCCCCCCcccccC-CCcccccccCCcccccccccccccc
Q 018740 72 LACPICYKPLTWIGD-SSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 72 l~CP~C~~~l~~~~~-~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
+.||-||++-..... ...+.+.......+|++||..|..-
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~ 41 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTF 41 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEe
Confidence 469999997522211 1111111222348899999988654
No 344
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.72 E-value=0.76 Score=43.16 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=34.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 219 (351)
.+-..++|+|.|.|++++.+.-.+ +..|.+||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 345689999999999999987654 4599999999777766654
No 345
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=90.63 E-value=0.11 Score=36.43 Aligned_cols=28 Identities=36% Similarity=1.018 Sum_probs=18.0
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
+.||.|+.+|.+.. +.+.|..|+..|..
T Consensus 2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~~~ 29 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-----------GHYHCEACQKDYKK 29 (70)
T ss_dssp -B-SSS-SBEEEET-----------TEEEETTT--EEEE
T ss_pred CcCCCCCCccEEeC-----------CEEECcccccccee
Confidence 57999999988765 67888888876543
No 346
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=90.54 E-value=0.11 Score=40.24 Aligned_cols=23 Identities=30% Similarity=0.844 Sum_probs=19.1
Q ss_pred CCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 74 CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
||+||+++.. ..+.|++|+....
T Consensus 1 CPvCg~~l~v-------------t~l~C~~C~t~i~ 23 (113)
T PF09862_consen 1 CPVCGGELVV-------------TRLKCPSCGTEIE 23 (113)
T ss_pred CCCCCCceEE-------------EEEEcCCCCCEEE
Confidence 9999999876 4699999987653
No 347
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.49 E-value=1.9 Score=39.86 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=55.6
Q ss_pred CCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
++.++|=+|+|. |.++..+++......++++|.++..++.+... . .+ |..+. ....+|+|+-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---------~---~i--~~~~~--~~~g~Dvvid~ 207 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---------E---VL--DPEKD--PRRDYRAIYDA 207 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---------c---cc--Chhhc--cCCCCCEEEEC
Confidence 466888889875 77877777764333477789888766655431 0 01 11110 12458988843
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...+ ..+..+.+.|+++|.+++...
T Consensus 208 -----~G~~-~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 208 -----SGDP-SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -----CCCH-HHHHHHHHhhhcCcEEEEEee
Confidence 3233 357888899999999987654
No 348
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.41 E-value=1.1 Score=41.16 Aligned_cols=101 Identities=21% Similarity=0.213 Sum_probs=74.3
Q ss_pred CCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
++.+|.-||.|. |.....++-- -.+.|+-+|+|..-+++....+ ..++.....+..++.-.-...|+|+..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f-------~~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLF-------GGRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhh-------CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 345788899886 6666655543 2569999999998888887653 345677776666554334578999976
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
-.+---..|.-..+++.+.+|||++++=..
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 666666788888999999999999887543
No 349
>PF14353 CpXC: CpXC protein
Probab=90.12 E-value=0.17 Score=40.48 Aligned_cols=40 Identities=18% Similarity=0.435 Sum_probs=24.3
Q ss_pred eeCCCCCCCcccccCCCccccc----------ccCCcccccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIES----------AAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~----------~~~~~~~C~~C~~~~~~~ 111 (351)
+.||.|+..+......+++.+. .....+.|++||+.+...
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 6799999965544333332111 122346899999987654
No 350
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=90.12 E-value=5.6 Score=38.01 Aligned_cols=121 Identities=15% Similarity=0.080 Sum_probs=70.8
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHH----HHHHHh---CCCCeEEEEeC----CHHHHHHHHHHHhhhCCCCCCCeEEE
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFS----RIFAKS---GLFSLVVALDY----SENMLKQCYEFVQQESNFPKENFLLV 235 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~----~~l~~~---~~~~~v~gvD~----s~~~~~~a~~~~~~~~g~~~~~i~~~ 235 (351)
..|.+.+.....-.|+|+|.|.|.-- ..|+.+ -|..++||++. +...++.+.+++.+.-...+-..+|.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 34555555556678999999999643 334433 24568999999 77778777776654310002334444
Q ss_pred Ee---cCCCC-----CCCCCceeeEEeccccccCCC-------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 236 RA---DISRL-----PFASSSIDAVHAGAAIHCWSS-------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 236 ~~---d~~~l-----p~~~~~fD~V~~~~vl~h~~d-------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.. +++.+ ...++..=+|-+...|||+.+ |...+-...+.|+|.-++ +.+...
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv-~~E~ea 246 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVV-LVEQEA 246 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEE-EEeecC
Confidence 42 23333 223344556667778899863 333344555678998544 444433
No 351
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=90.06 E-value=0.11 Score=42.76 Aligned_cols=39 Identities=21% Similarity=0.483 Sum_probs=23.8
Q ss_pred CceeCCCCCCCcccccCCCcc------cccccCCccccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLS------IESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~------~~~~~~~~~~C~~C~~~~ 108 (351)
..-.||.|+++|.....+... ........++|++||..|
T Consensus 96 e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiY 140 (165)
T COG1656 96 EFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIY 140 (165)
T ss_pred ccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccc
Confidence 467899999987655422110 111223356799999776
No 352
>PTZ00357 methyltransferase; Provisional
Probab=90.02 E-value=1.9 Score=43.85 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=63.9
Q ss_pred eEEEEcCccCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHh---hhCC---CCCCCeEEEEecCCCCCCCC---
Q 018740 180 NIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQ---QESN---FPKENFLLVRADISRLPFAS--- 246 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~---~~~g---~~~~~i~~~~~d~~~lp~~~--- 246 (351)
.|+-+|+|-|-+.....+. +-..++++||-++..+...+.+.. .+.+ .....|+++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999987665543 445689999999664444443321 2200 01245899999998874321
Q ss_pred --------CceeeEEeccccccCCCh---HHHHHHHHhcccC----CcE
Q 018740 247 --------SSIDAVHAGAAIHCWSSP---STGVAEISRVLRP----GGV 280 (351)
Q Consensus 247 --------~~fD~V~~~~vl~h~~d~---~~~l~~i~~~Lkp----gG~ 280 (351)
+.+|+|++ ..|-.+.|- ..-|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 37999996 233333332 2557777888876 776
No 353
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=90.01 E-value=0.17 Score=27.34 Aligned_cols=21 Identities=24% Similarity=0.620 Sum_probs=15.7
Q ss_pred CCCCCCCcccccCCCcccccccCCcccccccccc
Q 018740 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (351)
Q Consensus 74 CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (351)
||.||..+.. +.-.|+.||+.
T Consensus 2 Cp~CG~~~~~-------------~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIED-------------DAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCC-------------cCcchhhhCCc
Confidence 9999987653 45669999863
No 354
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.00 E-value=0.35 Score=46.88 Aligned_cols=107 Identities=22% Similarity=0.247 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC----CCCCCcee
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSID 250 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~~fD 250 (351)
.++.+|||.=|++|.-+..+++..+ ..+|++-|.+++.++..+++...+ + ....++....|+..+ +-....||
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N-~-v~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN-G-VEDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc-C-chhhcccccchHHHHHHhccccccccc
Confidence 3456899999999998888877643 357899999999999999887665 1 134455666676443 33356799
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+|- |.-+..+..+|..+.+.++.||+|.++.-..
T Consensus 186 vID----LDPyGs~s~FLDsAvqav~~gGLL~vT~TD~ 219 (525)
T KOG1253|consen 186 VID----LDPYGSPSPFLDSAVQAVRDGGLLCVTCTDM 219 (525)
T ss_pred eEe----cCCCCCccHHHHHHHHHhhcCCEEEEEecch
Confidence 887 3444567799999999999999999876543
No 355
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=89.91 E-value=0.16 Score=30.60 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=19.9
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
.-||.|+.-|...... .....|++|+..+++.
T Consensus 2 ~FCp~C~nlL~p~~~~--------~~~~~C~~C~Y~~~~~ 33 (35)
T PF02150_consen 2 RFCPECGNLLYPKEDK--------EKRVACRTCGYEEPIS 33 (35)
T ss_dssp -BETTTTSBEEEEEET--------TTTEEESSSS-EEE-S
T ss_pred eeCCCCCccceEcCCC--------ccCcCCCCCCCccCCC
Confidence 4599999977665421 1222899999887654
No 356
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=89.83 E-value=0.24 Score=31.51 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=22.2
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
.+.|..||..+.... ...++|+.||+...
T Consensus 2 ~Y~C~~Cg~~~~~~~----------~~~irC~~CG~rIl 30 (44)
T smart00659 2 IYICGECGRENEIKS----------KDVVRCRECGYRIL 30 (44)
T ss_pred EEECCCCCCEeecCC----------CCceECCCCCceEE
Confidence 478999999766542 46899999997644
No 357
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.78 E-value=5.6 Score=37.45 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=60.1
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-----C-CCC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-FAS 246 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-----p-~~~ 246 (351)
...++.+||=.|+|. |..+..+++.....+|+++|.++.-.+.+++. | .. .++...-.+. . ...
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-----G--a~--~~i~~~~~~~~~~i~~~~~~ 243 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-----G--AT--HTVNSSGTDPVEAIRALTGG 243 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-----C--Cc--eEEcCCCcCHHHHHHHHhCC
Confidence 445688999999864 66667677664222599999999888888653 1 11 1111111110 0 112
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..+|+|+- ....+ ..+....+.|++||.+++...
T Consensus 244 ~g~d~vid-----~~g~~-~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 244 FGADVVID-----AVGRP-ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCCEEEE-----CCCCH-HHHHHHHHHhccCCEEEEECC
Confidence 35888873 33333 356778889999999987654
No 358
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.73 E-value=9.6 Score=37.99 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=23.7
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCC
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 210 (351)
..+--.|.|+=.....+.+.+|+..|..+|-+
T Consensus 262 ~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d 293 (505)
T TIGR00595 262 EDLVYKGYGTEQVEEELAKLFPGARIARIDSD 293 (505)
T ss_pred CeeEeecccHHHHHHHHHhhCCCCcEEEEecc
Confidence 35666777887788888888777778887755
No 359
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=89.69 E-value=0.3 Score=32.13 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=22.9
Q ss_pred eCCCCCCCcccccCCCcccccccCCccccccccccccccCc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g 113 (351)
-||.||..+...... ....+.|+.|+..+.....
T Consensus 2 FCp~Cg~~l~~~~~~-------~~~~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 2 FCPKCGNMLIPKEGK-------EKRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCCCCCCccccccCC-------CCCEEECCcCCCeEECCCc
Confidence 499999977554311 1147889999987665533
No 360
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=89.62 E-value=0.35 Score=32.29 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=26.7
Q ss_pred ccCCCceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 66 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
......+.|-.|++...+.. ...++|..||+...
T Consensus 15 r~~~miYiCgdC~~en~lk~----------~D~irCReCG~RIl 48 (62)
T KOG3507|consen 15 RTATMIYICGDCGQENTLKR----------GDVIRCRECGYRIL 48 (62)
T ss_pred CcccEEEEeccccccccccC----------CCcEehhhcchHHH
Confidence 55668899999999876654 46899999997543
No 361
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=89.60 E-value=1.1 Score=42.35 Aligned_cols=121 Identities=9% Similarity=0.016 Sum_probs=80.1
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh------hCCCCCCCeEEEEecCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ESNFPKENFLLVRADIS 240 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~g~~~~~i~~~~~d~~ 240 (351)
..+.+.++..++....|+|+|.|.....++..+....-+|+++.....+.+..+... .-|.....++.+.+++.
T Consensus 182 ~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 182 RSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 344555677788899999999999999888876555678888775544444332221 11433456778888876
Q ss_pred CCCC---CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 241 RLPF---ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 241 ~lp~---~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.... -....++|+++++.-. ++...-+.++..-+++|-+++-..+..
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred CHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEecccccc
Confidence 5321 2345788888777432 233344668889999998888765543
No 362
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.47 E-value=2.6 Score=40.78 Aligned_cols=100 Identities=10% Similarity=0.027 Sum_probs=61.5
Q ss_pred HHHHHhccCC-CCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 166 FELMKGYLKP-VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 166 ~~~l~~~l~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.+.+.+..+. .++.+|+=+|+|. |......++.. +.+|+.+|.++.-...|+.. ..... +..+.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----------G~~~~--~~~e~- 254 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----------GYEVM--TMEEA- 254 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----------CCEEc--cHHHH-
Confidence 3444444332 4688999999997 77666555543 34899999999877777652 11211 11111
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
-...|+|+..- ..+..+-.+..+.+++||+++....
T Consensus 255 --v~~aDVVI~at-----G~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 255 --VKEGDIFVTTT-----GNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred --HcCCCEEEECC-----CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 12479988532 2333333345889999999987653
No 363
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=89.42 E-value=0.32 Score=44.16 Aligned_cols=99 Identities=20% Similarity=0.306 Sum_probs=68.2
Q ss_pred CCeEEEEcCccCHHHH-HHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 178 GGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~-~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
+..|+|+=.|.|+|+. .+...+ ...|+++|.+|..++..++.+..+ +. .++...+.+|-.. +-++...|-|...
T Consensus 195 ~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N-~V-~~r~~i~~gd~R~-~~~~~~AdrVnLG- 269 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEAN-NV-MDRCRITEGDNRN-PKPRLRADRVNLG- 269 (351)
T ss_pred cchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhc-ch-HHHHHhhhccccc-cCccccchheeec-
Confidence 4689999999999998 666666 368999999999999999987765 11 3444555566544 3356777877743
Q ss_pred ccccCCChHHHHHHHHhcccCCcE-EEEE
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGV-FVGT 284 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~-li~~ 284 (351)
-+|.-++-.--+.++|+|.|- ++-.
T Consensus 270 ---LlPSse~~W~~A~k~Lk~eggsilHI 295 (351)
T KOG1227|consen 270 ---LLPSSEQGWPTAIKALKPEGGSILHI 295 (351)
T ss_pred ---cccccccchHHHHHHhhhcCCcEEEE
Confidence 345555445556677887443 4443
No 364
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.35 E-value=1.7 Score=38.88 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++...+|+|...|.++..|.+++- .|+++|-.+ |.+..-. .+.++....|-.+........|..+|.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~-ma~sL~d---------tg~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGP-MAQSLMD---------TGQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce--EEEEeccch-hhhhhhc---------ccceeeeeccCcccccCCCCCceEEee
Confidence 4578999999999999999999976 999999755 4333322 578889999988775456679998886
Q ss_pred cccccCCChHHHHHHHHhcccC
Q 018740 256 AAIHCWSSPSTGVAEISRVLRP 277 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~Lkp 277 (351)
.| ..|.+.-+-|...|..
T Consensus 278 mV----EkP~rv~~li~~Wl~n 295 (358)
T COG2933 278 MV----EKPARVAALIAKWLVN 295 (358)
T ss_pred hh----cCcHHHHHHHHHHHHc
Confidence 55 6677776667776654
No 365
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=89.32 E-value=0.22 Score=32.70 Aligned_cols=27 Identities=22% Similarity=0.360 Sum_probs=19.2
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
-.||.|++.+... ..+.+.|..||..+
T Consensus 21 ~fCP~Cg~~~m~~----------~~~r~~C~~Cgyt~ 47 (50)
T PRK00432 21 KFCPRCGSGFMAE----------HLDRWHCGKCGYTE 47 (50)
T ss_pred CcCcCCCcchhec----------cCCcEECCCcCCEE
Confidence 4799999852222 13789999998765
No 366
>PRK14873 primosome assembly protein PriA; Provisional
Probab=89.17 E-value=4.1 Score=41.99 Aligned_cols=96 Identities=13% Similarity=0.005 Sum_probs=57.3
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc-
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA- 256 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~- 256 (351)
+..+.-.|-|+-.....+.+.+|+..|.-+|-+ .+++.. .....++.+.=...|...+.+.+|...+
T Consensus 430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d-~~l~~~-----------~~~~~IlVGTqgaepm~~g~~~lV~ilda 497 (665)
T PRK14873 430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGD-QVVDTV-----------DAGPALVVATPGAEPRVEGGYGAALLLDA 497 (665)
T ss_pred CCcceeeeccHHHHHHHHHHHCCCCCEEEEChH-HHHHhh-----------ccCCCEEEECCCCcccccCCceEEEEEcc
Confidence 345788888999999999999998889888854 222221 1245566676433333335677776443
Q ss_pred -ccccCCCh---HHHHHHHHhcc------cCCcEEEEEe
Q 018740 257 -AIHCWSSP---STGVAEISRVL------RPGGVFVGTT 285 (351)
Q Consensus 257 -vl~h~~d~---~~~l~~i~~~L------kpgG~li~~~ 285 (351)
.+-+.+|. +.+++.+.++. +++|.+++.+
T Consensus 498 D~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 498 WALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred hhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 23334443 34444444333 3468888764
No 367
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=89.16 E-value=0.11 Score=32.09 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=19.7
Q ss_pred eCCCCCCCccc-ccCCCcccccccCCccccccccccc
Q 018740 73 ACPICYKPLTW-IGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 73 ~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
.||.|+..-.. ......+.++...-.+.|.+|++.+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w 38 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW 38 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence 69999994211 1112333454556678899999865
No 368
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.92 E-value=6.8 Score=36.47 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=59.7
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceee
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 251 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~ 251 (351)
.+..++.+||=.|+|. |.++..+++.. +.+|++++.++.-.+.+++. | ... .+ +..+. ..+.+|+
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~-----G--a~~--vi--~~~~~--~~~~~d~ 226 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL-----G--AAS--AG--GAYDT--PPEPLDA 226 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh-----C--Cce--ec--ccccc--CcccceE
Confidence 4456688999999753 55666666653 34899999999888887764 1 111 11 11111 1235787
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 252 V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
++-... .+ ..+....+.|++||.+++...
T Consensus 227 ~i~~~~-----~~-~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAP-----AG-GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCC-----cH-HHHHHHHHhhCCCcEEEEEec
Confidence 653322 22 368888899999999987654
No 369
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=88.59 E-value=0.27 Score=37.92 Aligned_cols=31 Identities=16% Similarity=0.411 Sum_probs=23.9
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
.-+||.||..|.- .......|+.||..|+..
T Consensus 9 KR~Cp~CG~kFYD----------Lnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYD----------LNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhcc----------CCCCCccCCCCCCccCcc
Confidence 4679999997643 224678899999998765
No 370
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=88.57 E-value=0.35 Score=28.47 Aligned_cols=28 Identities=18% Similarity=0.484 Sum_probs=18.9
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
+.|..|+....... ...++|+.||+...
T Consensus 1 Y~C~~Cg~~~~~~~----------~~~irC~~CG~RIl 28 (32)
T PF03604_consen 1 YICGECGAEVELKP----------GDPIRCPECGHRIL 28 (32)
T ss_dssp EBESSSSSSE-BST----------SSTSSBSSSS-SEE
T ss_pred CCCCcCCCeeEcCC----------CCcEECCcCCCeEE
Confidence 46899998766443 35789999997643
No 371
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=88.00 E-value=6.4 Score=37.26 Aligned_cols=99 Identities=21% Similarity=0.176 Sum_probs=59.9
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-----CCCC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----PFAS 246 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-----p~~~ 246 (351)
....++.+||=.|+|. |.++..+++.....+|+++|.++.-++.+++. | .. .++..+-.++ ....
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-----G--a~--~~i~~~~~~~~~~i~~~~~ 257 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-----G--AT--ATVNAGDPNAVEQVRELTG 257 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-----C--Cc--eEeCCCchhHHHHHHHHhC
Confidence 3455678888899864 66666676664222699999999988888653 1 11 1111111110 0112
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+.+|+|+-. ...+ ..+....+.|+++|.++....
T Consensus 258 ~g~d~vid~-----~G~~-~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 258 GGVDYAFEM-----AGSV-PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCCEEEEC-----CCCh-HHHHHHHHHHhcCCEEEEEcc
Confidence 358888742 2222 457778889999999887543
No 372
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=87.97 E-value=0.28 Score=32.97 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=22.4
Q ss_pred cccCCCceeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
+......+.||.||......-..-. ...+.++|++||.
T Consensus 21 p~e~~v~F~CPnCGe~~I~Rc~~CR----k~g~~Y~Cp~CGF 58 (61)
T COG2888 21 PGETAVKFPCPNCGEVEIYRCAKCR----KLGNPYRCPKCGF 58 (61)
T ss_pred cCCceeEeeCCCCCceeeehhhhHH----HcCCceECCCcCc
Confidence 3444566889999965433221111 2346788888874
No 373
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.84 E-value=2.9 Score=37.93 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=58.6
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-c----CCCCCCCCCc
Q 018740 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-D----ISRLPFASSS 248 (351)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d----~~~lp~~~~~ 248 (351)
..++.+||=+|+|. |.++..+++......|+++|.++.-.+.+++. | .. .++.. + +..+. ....
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~-----G--a~--~~i~~~~~~~~~~~~~-~~~g 187 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF-----G--AT--ALAEPEVLAERQGGLQ-NGRG 187 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-----C--Cc--EecCchhhHHHHHHHh-CCCC
Confidence 34678999998864 66666666664222489999998888777763 1 11 11110 1 00111 1235
Q ss_pred eeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+|+|+- ....+ ..+....+.|+++|.+++...
T Consensus 188 ~d~vid-----~~G~~-~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 188 VDVALE-----FSGAT-AAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCEEEE-----CCCCh-HHHHHHHHHhcCCCEEEEecc
Confidence 888873 22222 457788899999999987654
No 374
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.82 E-value=1.2 Score=42.55 Aligned_cols=55 Identities=7% Similarity=-0.095 Sum_probs=41.3
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
.-.+.|+..++.+||-|.+|-...+..+.+ +| .+|++||+|+..+...+=+++..
T Consensus 26 vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~-~P-~~I~aVDlNp~Q~aLleLKlAai 80 (380)
T PF11899_consen 26 VDMEALNIGPDDRVLTITSAGCNALDYLLA-GP-KRIHAVDLNPAQNALLELKLAAI 80 (380)
T ss_pred HHHHHhCCCCCCeEEEEccCCchHHHHHhc-CC-ceEEEEeCCHHHHHHHHHHHHHH
Confidence 445667788899999999876666666554 43 59999999999888877665543
No 375
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=87.81 E-value=0.25 Score=29.93 Aligned_cols=28 Identities=18% Similarity=0.511 Sum_probs=20.8
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCcccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (351)
....|+.|++.+... ..+.+.|..||+.
T Consensus 7 ~~~~C~~C~~~~~~~----------~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 7 PNEPCPVCGSRWFYS----------DDGFYYCDRCGHQ 34 (36)
T ss_pred CCCcCCCCCCeEeEc----------cCCEEEhhhCceE
Confidence 346699999984332 3589999999975
No 376
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=87.77 E-value=0.24 Score=41.96 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=26.5
Q ss_pred ccccCCCceeCCCCCCCcccccCCCcccccccCCcccccccccc
Q 018740 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (351)
Q Consensus 64 ~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (351)
+.+.....+.||.|+..++... .....+.|+.||..
T Consensus 110 ~~e~~~~~Y~Cp~C~~rytf~e--------A~~~~F~Cp~Cg~~ 145 (178)
T PRK06266 110 EEEENNMFFFCPNCHIRFTFDE--------AMEYGFRCPQCGEM 145 (178)
T ss_pred hhccCCCEEECCCCCcEEeHHH--------HhhcCCcCCCCCCC
Confidence 3445557899999998766554 44568999999854
No 377
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=87.57 E-value=0.34 Score=30.29 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=18.4
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~ 105 (351)
-.||.|+.||.... .+...|..|+
T Consensus 18 ~~Cp~C~~PL~~~k----------~g~~~Cv~C~ 41 (41)
T PF06677_consen 18 EHCPDCGTPLMRDK----------DGKIYCVSCG 41 (41)
T ss_pred CccCCCCCeeEEec----------CCCEECCCCC
Confidence 46999999988733 3567899885
No 378
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=87.24 E-value=0.24 Score=41.12 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=26.1
Q ss_pred cccCCCceeCCCCCCCcccccCCCcccccccCCcccccccccc
Q 018740 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (351)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (351)
.+..-..+.||.|+..++... .....+.|+.||..
T Consensus 103 ~e~~~~~Y~Cp~c~~r~tf~e--------A~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 103 FETNNMFFICPNMCVRFTFNE--------AMELNFTCPRCGAM 137 (158)
T ss_pred hccCCCeEECCCCCcEeeHHH--------HHHcCCcCCCCCCE
Confidence 445567899999998766554 44467999999854
No 379
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=86.94 E-value=0.36 Score=26.86 Aligned_cols=22 Identities=23% Similarity=0.646 Sum_probs=16.5
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
..||.||..+. .+.-.|++||.
T Consensus 3 ~~Cp~Cg~~~~-------------~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEID-------------PDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCC-------------cccccChhhCC
Confidence 57999998532 25678999985
No 380
>PRK05580 primosome assembly protein PriA; Validated
Probab=86.87 E-value=14 Score=38.34 Aligned_cols=103 Identities=11% Similarity=0.064 Sum_probs=52.1
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHH----HHHHHHHHHhhhCCCCCCCeEEEEec-CC--CCCCCCCceee
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSEN----MLKQCYEFVQQESNFPKENFLLVRAD-IS--RLPFASSSIDA 251 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~----~~~~a~~~~~~~~g~~~~~i~~~~~d-~~--~lp~~~~~fD~ 251 (351)
..+-..|-|+=.....+.+.+|+..+.-+|-+.. ..+...+.+.. ..+.++.+. +- .+.++ .+++
T Consensus 430 ~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~------g~~~ILVgT~~iakG~d~p--~v~l 501 (679)
T PRK05580 430 TDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR------GEADILIGTQMLAKGHDFP--NVTL 501 (679)
T ss_pred CeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc------CCCCEEEEChhhccCCCCC--CcCE
Confidence 3566677777777777777777667777775432 22223233322 233333332 21 11222 2455
Q ss_pred EE--eccccccCCCh---HHHHHHHHhcc------cCCcEEEEEeeccC
Q 018740 252 VH--AGAAIHCWSSP---STGVAEISRVL------RPGGVFVGTTYIVD 289 (351)
Q Consensus 252 V~--~~~vl~h~~d~---~~~l~~i~~~L------kpgG~li~~~~~~~ 289 (351)
|+ .....-+.+|. +.+++.+..+. ..+|.+++.+...+
T Consensus 502 V~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 502 VGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred EEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 53 33334444542 33333333222 45789999887764
No 381
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=86.81 E-value=0.3 Score=30.41 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=22.0
Q ss_pred eCCCCCCCccc-ccCCCcccccccCCccccccccccc
Q 018740 73 ACPICYKPLTW-IGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 73 ~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
.||.|+..-.. -.....+.++-+.-.+.|.+|++.+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w 38 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRW 38 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEe
Confidence 69999984211 1112333444555678999999765
No 382
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=86.60 E-value=8.6 Score=30.42 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=54.8
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+.-.|+|+.++--+- .|....|-.+.+.|..+|.+.+.+|-.. ...+.++.++.+...
T Consensus 43 ddvvD~vllWwR~~D-gDL~D~LvDa~~~L~d~G~IWvltPK~g---------------------r~g~V~~~~I~eaA~ 100 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDD-GDLVDALVDARTNLADDGVIWVLTPKAG---------------------RPGHVEPSDIREAAP 100 (127)
T ss_pred cccccEEEEEEECCc-chHHHHHHHHHhhhcCCCEEEEEccCCC---------------------CCCCCCHHHHHHHHh
Confidence 456899988766433 2667888889999999999999988642 224568889999999
Q ss_pred HCCCeEEEEEecC
Q 018740 326 ACGLVDFKCTRNR 338 (351)
Q Consensus 326 ~aGf~~v~~~~~g 338 (351)
.+|+...+....+
T Consensus 101 taGL~~t~~~~v~ 113 (127)
T PF11253_consen 101 TAGLVQTKSCAVG 113 (127)
T ss_pred hcCCeeeeeeccC
Confidence 9999988866544
No 383
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=86.49 E-value=0.25 Score=31.96 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=25.6
Q ss_pred eCCCCCCCcccccCCCcccccccCCcccccc--ccccccccCce
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT--CKKTYSGVGTH 114 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~g~ 114 (351)
.||.||+.......... ......-..+|.+ ||+.|.....+
T Consensus 1 ~CP~Cg~~a~ir~S~~~-s~~~~~~Y~qC~N~~Cg~tfv~~~~~ 43 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQL-SPLTRELYCQCTNPECGHTFVANLEF 43 (47)
T ss_pred CcCCCCCeeEEEEchhh-CcceEEEEEEECCCcCCCEEEEEEEE
Confidence 49999996544432222 2223445678988 99988765443
No 384
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=86.48 E-value=0.25 Score=41.61 Aligned_cols=38 Identities=13% Similarity=0.289 Sum_probs=22.5
Q ss_pred CceeCCCCCCCccc-ccCCCcccccccCCcccccccccccccc
Q 018740 70 NVLACPICYKPLTW-IGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 70 ~~l~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
-.+.||.|++.-.. ..... ....-.++|.+||.+++..
T Consensus 5 iy~~Cp~Cg~eev~hEVik~----~g~~~lvrC~eCG~V~~~~ 43 (201)
T COG1326 5 IYIECPSCGSEEVSHEVIKE----RGREPLVRCEECGTVHPAI 43 (201)
T ss_pred EEEECCCCCcchhhHHHHHh----cCCceEEEccCCCcEeece
Confidence 35789999942211 11000 0122478999999999653
No 385
>PLN02740 Alcohol dehydrogenase-like
Probab=86.40 E-value=11 Score=35.98 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=59.9
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEec-----CCC-C-CC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-----ISR-L-PF 244 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d-----~~~-l-p~ 244 (351)
....++.+||=+|+|. |.++..+++.....+|+++|.+++-++.+++. | .. .++... ..+ + ..
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-----G--a~--~~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-----G--IT--DFINPKDSDKPVHERIREM 264 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-----C--Cc--EEEecccccchHHHHHHHH
Confidence 3456688999999875 66666677664222699999999888888652 1 11 122111 100 0 01
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
..+.+|+|+- ....+ ..+....+.+++| |.+++...
T Consensus 265 ~~~g~dvvid-----~~G~~-~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 265 TGGGVDYSFE-----CAGNV-EVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred hCCCCCEEEE-----CCCCh-HHHHHHHHhhhcCCCEEEEEcc
Confidence 1225898874 33333 4577777888886 88776543
No 386
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=86.30 E-value=0.13 Score=32.11 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=21.1
Q ss_pred eCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
.||.|+..+..... .......|++|+-.+...
T Consensus 1 ~CP~C~~~l~~~~~-------~~~~id~C~~C~G~W~d~ 32 (41)
T PF13453_consen 1 KCPRCGTELEPVRL-------GDVEIDVCPSCGGIWFDA 32 (41)
T ss_pred CcCCCCcccceEEE-------CCEEEEECCCCCeEEccH
Confidence 49999997654431 112456799998776554
No 387
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=86.11 E-value=7.5 Score=36.03 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=58.3
Q ss_pred CCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEec---CCCCCCCCCceeeE
Q 018740 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD---ISRLPFASSSIDAV 252 (351)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d---~~~lp~~~~~fD~V 252 (351)
++.+||-.|+|. |..+..+++......+++++.++...+.+++. | .. .++..+ +..+....+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-----g--~~--~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-----G--AD--ETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-----C--CC--EEEcCCchhhhhhhccCCCccEE
Confidence 678898888875 66766676664222689999998887766552 1 11 111111 11222122358998
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
+..... ...++++.+.|+++|.++...
T Consensus 236 ld~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 236 FEASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 854321 235788899999999988654
No 388
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=85.91 E-value=0.65 Score=28.13 Aligned_cols=31 Identities=16% Similarity=0.509 Sum_probs=18.9
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~ 105 (351)
+.||.|++......+. -+....+.++|..|+
T Consensus 6 v~CP~C~s~~~v~k~G---~~~~G~qryrC~~C~ 36 (36)
T PF03811_consen 6 VHCPRCQSTEGVKKNG---KSPSGHQRYRCKDCR 36 (36)
T ss_pred eeCCCCCCCCcceeCC---CCCCCCEeEecCcCC
Confidence 6799999965222211 111235678999885
No 389
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=85.53 E-value=8.9 Score=33.53 Aligned_cols=74 Identities=7% Similarity=0.124 Sum_probs=51.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
.++.+.+....+.....-|.+||.|.|..++.+.+.+. .+...++.++..+.-.+-..+.. ..+...+.+|+..
T Consensus 36 ~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L~EAa----~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 36 LRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQMLSEAA----PGKLRIHHGDVLR 109 (326)
T ss_pred hHHHHHHHHhccccccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHHhhcC----CcceEEeccccce
Confidence 34445566666655667899999999999999998874 47788888876665555443333 3466667777643
No 390
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=85.43 E-value=0.35 Score=39.62 Aligned_cols=41 Identities=20% Similarity=0.582 Sum_probs=25.1
Q ss_pred cccCCCceeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
.+..-..+.||.|+..+........ .+ ..+.+.|+.||..-
T Consensus 93 ~e~~~~~Y~Cp~C~~~y~~~ea~~~-~d--~~~~f~Cp~Cg~~l 133 (147)
T smart00531 93 DETNNAYYKCPNCQSKYTFLEANQL-LD--MDGTFTCPRCGEEL 133 (147)
T ss_pred cccCCcEEECcCCCCEeeHHHHHHh-cC--CCCcEECCCCCCEE
Confidence 3334567999999986654331111 11 24559999998643
No 391
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=85.34 E-value=0.64 Score=30.66 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=22.3
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
-+.||+||..-....+. +.....=.+.|+.|...-.+
T Consensus 4 Wi~CP~CgnKTR~kir~---DT~LkNfPlyCpKCK~EtlI 40 (55)
T PF14205_consen 4 WILCPICGNKTRLKIRE---DTVLKNFPLYCPKCKQETLI 40 (55)
T ss_pred EEECCCCCCccceeeec---CceeccccccCCCCCceEEE
Confidence 36799999854333221 12233335789999876554
No 392
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=85.21 E-value=0.42 Score=27.19 Aligned_cols=22 Identities=23% Similarity=0.656 Sum_probs=10.8
Q ss_pred eCCCCCCCcccccCCCcccccccCCcccccc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT 103 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~ 103 (351)
.||.|++++.... ..-.++|.+
T Consensus 1 ~CP~C~s~l~~~~---------~ev~~~C~N 22 (28)
T PF03119_consen 1 TCPVCGSKLVREE---------GEVDIRCPN 22 (28)
T ss_dssp B-TTT--BEEE-C---------CTTCEEE--
T ss_pred CcCCCCCEeEcCC---------CCEeEECCC
Confidence 4999999987553 234677754
No 393
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.15 E-value=1.6 Score=41.62 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=51.3
Q ss_pred CCCeEEEEecCCCCC--CCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccC
Q 018740 229 KENFLLVRADISRLP--FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 229 ~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.+++.++.+++.+.- .+++++|.++.....+++++. ...++++.+.++|||+++.-+....
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 589999999987642 457899999999999999754 4779999999999999999777654
No 394
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=85.01 E-value=0.58 Score=36.79 Aligned_cols=31 Identities=6% Similarity=-0.047 Sum_probs=23.6
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
.-.||.||..+.- .......|+.||..|+..
T Consensus 9 Kr~Cp~cg~kFYD----------Lnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYD----------LNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccc----------cCCCCccCCCcCCccCcc
Confidence 4679999997643 234788999999988654
No 395
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=84.78 E-value=4.3 Score=36.63 Aligned_cols=73 Identities=21% Similarity=0.173 Sum_probs=45.3
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
.+...--..+...++|+|||.|.++..+++.. ....++.||-...-.+.-+ ++... . ..+.+.=+..|+.++
T Consensus 9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~-~-~~~~~~R~riDI~dl 85 (259)
T PF05206_consen 9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKD-E-SEPKFERLRIDIKDL 85 (259)
T ss_pred HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhcc-C-CCCceEEEEEEeecc
Confidence 33333333456799999999999999999876 4458899998653332222 22222 0 013456667777665
Q ss_pred C
Q 018740 243 P 243 (351)
Q Consensus 243 p 243 (351)
.
T Consensus 86 ~ 86 (259)
T PF05206_consen 86 D 86 (259)
T ss_pred c
Confidence 4
No 396
>PRK11524 putative methyltransferase; Provisional
Probab=84.70 E-value=0.8 Score=41.95 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=37.5
Q ss_pred CCeEEEEecCCCC--CCCCCceeeEEeccccc----------cC------CChHHHHHHHHhcccCCcEEEEE
Q 018740 230 ENFLLVRADISRL--PFASSSIDAVHAGAAIH----------CW------SSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 230 ~~i~~~~~d~~~l--p~~~~~fD~V~~~~vl~----------h~------~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
.+..++++|..+. .+++++||+|++.=-.. .+ .-....+.++.++|||||.+++.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3456788887663 35678899999842110 00 01146889999999999999885
No 397
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.65 E-value=0.38 Score=37.44 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=26.2
Q ss_pred CCceeCCCCCCCcccccCC--CcccccccCCccccccccccccccC
Q 018740 69 KNVLACPICYKPLTWIGDS--SLSIESAAGSSLQCNTCKKTYSGVG 112 (351)
Q Consensus 69 ~~~l~CP~C~~~l~~~~~~--~~~~~~~~~~~~~C~~C~~~~~~~~ 112 (351)
..++.||+|..++.-+.+- -...+...+..-.|.+||+.||+.+
T Consensus 37 ati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwte 82 (160)
T COG4306 37 ATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTE 82 (160)
T ss_pred HHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHH
Confidence 3568999999865432210 1111112233457999999999853
No 398
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=84.64 E-value=0.63 Score=28.76 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=20.3
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
.+.||.||..+...... .......|+.||.
T Consensus 5 ~y~C~~Cg~~fe~~~~~------~~~~~~~CP~Cg~ 34 (41)
T smart00834 5 EYRCEDCGHTFEVLQKI------SDDPLATCPECGG 34 (41)
T ss_pred EEEcCCCCCEEEEEEec------CCCCCCCCCCCCC
Confidence 47899999966543311 1146788999987
No 399
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=84.63 E-value=13 Score=34.78 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=66.7
Q ss_pred HHHhccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe----cCCC-
Q 018740 168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA----DISR- 241 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~----d~~~- 241 (351)
.+.+..+..++.+|.-+|||. |.....-++.....+++++|+++.-++.|++. .-..++.. |+.+
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f---------GAT~~vn~~~~~~vv~~ 246 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF---------GATHFVNPKEVDDVVEA 246 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc---------CCceeecchhhhhHHHH
Confidence 344555677889999999985 66666555554456999999999999999884 22223322 1111
Q ss_pred -CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 242 -LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 242 -lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
....++..|.++ +..-+.. .++.....+.++|..++.-.
T Consensus 247 i~~~T~gG~d~~~-----e~~G~~~-~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 247 IVELTDGGADYAF-----ECVGNVE-VMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred HHHhcCCCCCEEE-----EccCCHH-HHHHHHHHHhcCCeEEEEec
Confidence 012233566654 4444444 67777888888998877554
No 400
>PRK10220 hypothetical protein; Provisional
Probab=84.53 E-value=0.74 Score=35.08 Aligned_cols=31 Identities=19% Similarity=0.583 Sum_probs=23.9
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
+-.||.|++...-.. ...+.|+.|++.+...
T Consensus 3 lP~CP~C~seytY~d----------~~~~vCpeC~hEW~~~ 33 (111)
T PRK10220 3 LPHCPKCNSEYTYED----------NGMYICPECAHEWNDA 33 (111)
T ss_pred CCcCCCCCCcceEcC----------CCeEECCcccCcCCcc
Confidence 356999999876544 3578999999988655
No 401
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=84.50 E-value=0.46 Score=35.34 Aligned_cols=37 Identities=22% Similarity=0.436 Sum_probs=27.5
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccccccccCce
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH 114 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~ 114 (351)
++-||.||..|...... . -..+.|+.|...+++...+
T Consensus 1 m~FCP~Cgn~Live~g~------~-~~rf~C~tCpY~~~I~~ei 37 (105)
T KOG2906|consen 1 MLFCPTCGNMLIVESGE------S-CNRFSCRTCPYVFPISREI 37 (105)
T ss_pred CcccCCCCCEEEEecCC------e-EeeEEcCCCCceeeEeeee
Confidence 36799999988776522 1 3678999999888876333
No 402
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=84.37 E-value=5.8 Score=37.66 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=74.4
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--------------
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------------- 243 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-------------- 243 (351)
+.+.||.+|+.+.....+++.++..+--|+++....+..+..+-... +.......+..+|....+
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~-~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNS-EHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCc-ccccccCceeccccccceeccccHHHHHhhcc
Confidence 45899999999999999999877667789999998888877653331 111223344444432111
Q ss_pred ---------------CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCC
Q 018740 244 ---------------FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP 291 (351)
Q Consensus 244 ---------------~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~ 291 (351)
++..++|. ..++-|+.+...++......++|+|.+++.......+
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~~p 319 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRGLP 319 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCcCC
Confidence 22334444 4456677777778888999999999999877765433
No 403
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=84.35 E-value=0.76 Score=27.25 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=22.6
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
...|+.|++...... ..+.+.|..|+..++
T Consensus 3 ~~~C~~C~~~~i~~~---------~~~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 3 LKKCSKCGGNGIVNK---------EDDYEVCIFCGSSFP 32 (33)
T ss_pred ceEcCCCCCCeEEEe---------cCCeEEcccCCcEee
Confidence 467999999876522 247889999998775
No 404
>PRK10458 DNA cytosine methylase; Provisional
Probab=84.34 E-value=37 Score=33.46 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=47.6
Q ss_pred HHHHHhccCCCC------CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC
Q 018740 166 FELMKGYLKPVL------GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239 (351)
Q Consensus 166 ~~~l~~~l~~~~------~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~ 239 (351)
...+...+...+ .-+++|+=||.|.+...+...|. .-|.++|+++.+.+.-+.+... .+.......|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~DI 143 (467)
T PRK10458 70 FAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYC-----DPATHRFNEDI 143 (467)
T ss_pred HHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCC-----CCccceeccCh
Confidence 445555553222 45899999999999999988875 3567899999888777765321 12334445566
Q ss_pred CCC
Q 018740 240 SRL 242 (351)
Q Consensus 240 ~~l 242 (351)
.++
T Consensus 144 ~~i 146 (467)
T PRK10458 144 RDI 146 (467)
T ss_pred hhC
Confidence 554
No 405
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=84.09 E-value=0.64 Score=35.38 Aligned_cols=30 Identities=27% Similarity=0.677 Sum_probs=23.3
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
-.||.|++...-.. ...+.|+.|++.+...
T Consensus 3 p~CP~C~seytY~d----------g~~~iCpeC~~EW~~~ 32 (109)
T TIGR00686 3 PPCPKCNSEYTYHD----------GTQLICPSCLYEWNEN 32 (109)
T ss_pred CcCCcCCCcceEec----------CCeeECcccccccccc
Confidence 46999999876544 3678999999887654
No 406
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=84.08 E-value=14 Score=34.57 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=79.5
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC---CCceeeEEec
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAVHAG 255 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~---~~~fD~V~~~ 255 (351)
.+++|+=||.|.+..-+...|. .-+.++|+++.+++.-+.+. +...+...|+..+... ...+|+++..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf-~~~~a~Eid~~a~~ty~~n~--------~~~~~~~~di~~~~~~~~~~~~~DvligG 74 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGF-EIVFANEIDPPAVATYKANF--------PHGDIILGDIKELDGEALRKSDVDVLIGG 74 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCC-eEEEEEecCHHHHHHHHHhC--------CCCceeechHhhcChhhccccCCCEEEeC
Confidence 4799999999999999999884 36789999999888887763 3245666777654321 1168999976
Q ss_pred cccccC---------CChH----HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 256 AAIHCW---------SSPS----TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 256 ~vl~h~---------~d~~----~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
.-.+.+ .|+. --+.++...++| .+++.+.... .+. + +.-..+.+.+
T Consensus 75 pPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g-------l~~-----------~-~~~~~~~i~~ 133 (328)
T COG0270 75 PPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG-------LLS-----------S-KGQTFDEIKK 133 (328)
T ss_pred CCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch-------HHh-----------c-CchHHHHHHH
Confidence 544433 3443 334556667778 3444333211 100 1 2235678999
Q ss_pred HHHHCCCe
Q 018740 323 LCRACGLV 330 (351)
Q Consensus 323 ll~~aGf~ 330 (351)
.|++.|+.
T Consensus 134 ~L~~~GY~ 141 (328)
T COG0270 134 ELEELGYG 141 (328)
T ss_pred HHHHcCCc
Confidence 99999996
No 407
>PRK12495 hypothetical protein; Provisional
Probab=83.82 E-value=0.6 Score=40.30 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=25.0
Q ss_pred CCCceeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 68 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
.+....|+.||.++... .+..+|+.|+..+-.
T Consensus 39 tmsa~hC~~CG~PIpa~-----------pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 39 TMTNAHCDECGDPIFRH-----------DGQEFCPTCQQPVTE 70 (226)
T ss_pred ccchhhcccccCcccCC-----------CCeeECCCCCCcccc
Confidence 44557899999998833 488999999977654
No 408
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=83.81 E-value=0.58 Score=40.57 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=70.4
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-- 242 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-- 242 (351)
+.+.+..++.+.++...+|.--|.|..+..+.+..++.+++++|.+|-+-+.|+....+. ..+.+..+.+.+..+
T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el---~~~~l~a~Lg~Fs~~~~ 107 (303)
T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL---MHPTLKAVLGNFSYIKS 107 (303)
T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh---cchhHHHHHhhhHHHHH
Confidence 356778888899999999999999999999999988889999999998888887765332 123333333444333
Q ss_pred -----CCCCCceeeEEeccccccC--CChH
Q 018740 243 -----PFASSSIDAVHAGAAIHCW--SSPS 265 (351)
Q Consensus 243 -----p~~~~~fD~V~~~~vl~h~--~d~~ 265 (351)
.+.+.++|.|++......+ .+|.
T Consensus 108 l~~~~gl~~~~vDGiLmDlGcSSMQ~d~pe 137 (303)
T KOG2782|consen 108 LIADTGLLDVGVDGILMDLGCSSMQVDNPE 137 (303)
T ss_pred HHHHhCCCcCCcceEEeecCccccccCCcc
Confidence 2557889999976554333 3454
No 409
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=83.81 E-value=0.56 Score=31.60 Aligned_cols=34 Identities=15% Similarity=0.425 Sum_probs=19.3
Q ss_pred CCceeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 69 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
...+.||.||..+...-..- ......++|++||.
T Consensus 23 ~~~F~CPnCG~~~I~RC~~C----Rk~~~~Y~CP~CGF 56 (59)
T PRK14890 23 AVKFLCPNCGEVIIYRCEKC----RKQSNPYTCPKCGF 56 (59)
T ss_pred cCEeeCCCCCCeeEeechhH----HhcCCceECCCCCC
Confidence 45688999988633221000 02235677888874
No 410
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=83.49 E-value=2.5 Score=38.68 Aligned_cols=67 Identities=16% Similarity=0.336 Sum_probs=44.0
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
.+.||+|+.....-|+-.|. +.++++|+|+|++.+... ...+-+.-...+ .+.+.++++
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf-----mvdLrKEq~~~F-----------~~kv~eLA~ 278 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF-----MVDLRKEQLQEF-----------VKKVKELAK 278 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh-----heeCCHHHHHHH-----------HHHHHHHHH
Confidence 46799999877666655554 677899999999987521 111111111111 357889999
Q ss_pred HCCCeEEE
Q 018740 326 ACGLVDFK 333 (351)
Q Consensus 326 ~aGf~~v~ 333 (351)
++||+.+.
T Consensus 279 ~aG~~p~~ 286 (289)
T PF14740_consen 279 AAGFKPVT 286 (289)
T ss_pred HCCCcccc
Confidence 99998654
No 411
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=83.48 E-value=0.72 Score=36.86 Aligned_cols=42 Identities=14% Similarity=0.314 Sum_probs=27.1
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCccccccccccccccCcee
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHF 115 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~ 115 (351)
....||.|++.. ...... .....+.++|+.|+..+....|+.
T Consensus 29 ~~~~cP~C~s~~-~~k~g~---~~~~~qRyrC~~C~~tf~~~~~~~ 70 (129)
T COG3677 29 TKVNCPRCKSSN-VVKIGG---IRRGHQRYKCKSCGSTFTVETGSP 70 (129)
T ss_pred ccCcCCCCCccc-eeeECC---ccccccccccCCcCcceeeeccCc
Confidence 347799999966 221111 112267899999999887765553
No 412
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=83.47 E-value=9.4 Score=36.06 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHH-HHHHHHhhhCCCCCCCeEEEE-ecCCCCCCCCCceeeE
Q 018740 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLK-QCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAV 252 (351)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~-~a~~~~~~~~g~~~~~i~~~~-~d~~~lp~~~~~fD~V 252 (351)
.++.+||-.|+|. |.++..+++.. ..++++++.++.... .+++. | .. .++. .+...+....+.+|+|
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~-----G--a~--~vi~~~~~~~~~~~~~~~D~v 251 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRL-----G--AD--SFLVSTDPEKMKAAIGTMDYI 251 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhC-----C--Cc--EEEcCCCHHHHHhhcCCCCEE
Confidence 4577888899875 77777777663 347888888765433 22221 1 11 1111 0100111011247887
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+- ....+ ..+.+..+.|++||.++....
T Consensus 252 id-----~~g~~-~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 252 ID-----TVSAV-HALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred EE-----CCCCH-HHHHHHHHHhcCCcEEEEeCC
Confidence 73 33332 357788899999999887643
No 413
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=83.00 E-value=18 Score=33.56 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=58.9
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEec---CCCC-C-CC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD---ISRL-P-FA 245 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d---~~~l-p-~~ 245 (351)
+...++.+||=+|+|. |.++..+++.. +.+ |+++|.+++..+.+++. | .. .++... ...+ . ..
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~-----g--a~--~~i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKAL-----G--AD--FVINSGQDDVQEIRELTS 228 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-----C--CC--EEEcCCcchHHHHHHHhC
Confidence 4455688998898764 66666666653 235 99999998888777653 1 11 111111 0011 0 12
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...+|+|+-. ...+ ..+....+.|+++|.+++...
T Consensus 229 ~~~~d~vid~-----~g~~-~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 229 GAGADVAIEC-----SGNT-AARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCCCCEEEEC-----CCCH-HHHHHHHHHhhcCCEEEEEcC
Confidence 2368988832 2222 345677889999999987554
No 414
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=82.89 E-value=8.6 Score=32.53 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=58.4
Q ss_pred eEEEEcCcc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh------CCCC--------CCCeEEEEecCCCCC
Q 018740 180 NIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SNFP--------KENFLLVRADISRLP 243 (351)
Q Consensus 180 ~vLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~g~~--------~~~i~~~~~d~~~lp 243 (351)
+|.=||+|+ |. ++..++..|. +|+.+|.+++.++.+++++... .|.. ..++. ...|++.+-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh
Confidence 356688876 43 4555566666 9999999999998888876541 0110 12333 334554432
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
..|+|+=.- .|.+.-...+++++.+.+.|+-+|.-.+..
T Consensus 78 ----~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 78 ----DADLVIEAI-PEDLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp ----TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred ----hhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 477777322 132223358899999999999988776554
No 415
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=82.79 E-value=0.72 Score=44.06 Aligned_cols=35 Identities=17% Similarity=0.432 Sum_probs=26.2
Q ss_pred cCCCceeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
.....=.||.||......+ .+.++|+.|+..++..
T Consensus 346 ~~~~~p~Cp~Cg~~m~S~G----------~~g~rC~kCg~~~~~~ 380 (421)
T COG1571 346 YERVNPVCPRCGGRMKSAG----------RNGFRCKKCGTRARET 380 (421)
T ss_pred eEEcCCCCCccCCchhhcC----------CCCcccccccccCCcc
Confidence 3444457999999876555 3489999999888765
No 416
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=82.76 E-value=3.3 Score=35.13 Aligned_cols=94 Identities=12% Similarity=0.150 Sum_probs=52.6
Q ss_pred HHHhccCCCCCC-eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---
Q 018740 168 LMKGYLKPVLGG-NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--- 243 (351)
Q Consensus 168 ~l~~~l~~~~~~-~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--- 243 (351)
.+...+...++. .|+.+|||-=.....+....+...++-+|. |++++.-++.+.........+..++.+|+.+..
T Consensus 68 ~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~ 146 (183)
T PF04072_consen 68 AVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWID 146 (183)
T ss_dssp HHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHH
T ss_pred HHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHH
Confidence 344555333344 899999998777777776544456667775 556666666555430000123457889987531
Q ss_pred ------CCCCceeeEEeccccccCC
Q 018740 244 ------FASSSIDAVHAGAAIHCWS 262 (351)
Q Consensus 244 ------~~~~~fD~V~~~~vl~h~~ 262 (351)
+..+..-++++-+++.+++
T Consensus 147 ~L~~~g~~~~~ptl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 147 ALPKAGFDPDRPTLFIAEGVLMYLS 171 (183)
T ss_dssp HHHHCTT-TTSEEEEEEESSGGGS-
T ss_pred HHHHhCCCCCCCeEEEEcchhhcCC
Confidence 3345566777788888875
No 417
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=82.36 E-value=0.83 Score=29.28 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=18.2
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
..||.||+.-.... .....++|..|++
T Consensus 19 ~~CP~Cg~~~~~~~--------~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGSTKHYRL--------KTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCeeeEEe--------CCCCeEECCCCCC
Confidence 77999998521111 1147899999975
No 418
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=81.89 E-value=0.72 Score=37.78 Aligned_cols=39 Identities=23% Similarity=0.517 Sum_probs=23.3
Q ss_pred ceeCCCCCCCcccccCCCcc------cccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLS------IESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~------~~~~~~~~~~C~~C~~~~~ 109 (351)
.-+||.|+++|......... .........+|+.||..|-
T Consensus 91 ~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW 135 (147)
T PF01927_consen 91 FSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYW 135 (147)
T ss_pred CCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEec
Confidence 56899999977554322110 0011123678999998774
No 419
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=81.83 E-value=0.73 Score=38.82 Aligned_cols=29 Identities=31% Similarity=0.608 Sum_probs=23.4
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
-.-.|+.|+++|.... ..+.|++|+..-.
T Consensus 148 I~A~CsrC~~~L~~~~-----------~~l~Cp~Cg~tEk 176 (188)
T COG1096 148 IYARCSRCRAPLVKKG-----------NMLKCPNCGNTEK 176 (188)
T ss_pred EEEEccCCCcceEEcC-----------cEEECCCCCCEEe
Confidence 3457999999998754 7899999997654
No 420
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=81.51 E-value=3.5 Score=37.11 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHH
Q 018740 191 FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAE 270 (351)
Q Consensus 191 ~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~ 270 (351)
++..|.+.++..+|+|+|.++..++.|++. | -+.-...+.+.+ ..+|+|+.+--+.. ...++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-----g----~~~~~~~~~~~~----~~~DlvvlavP~~~---~~~~l~~ 64 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL-----G----IIDEASTDIEAV----EDADLVVLAVPVSA---IEDVLEE 64 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT-----T----SSSEEESHHHHG----GCCSEEEE-S-HHH---HHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC-----C----CeeeccCCHhHh----cCCCEEEEcCCHHH---HHHHHHH
Confidence 456788888778999999999999888763 1 111122222222 23699986544332 2455666
Q ss_pred HHhcccCCcEEEEE
Q 018740 271 ISRVLRPGGVFVGT 284 (351)
Q Consensus 271 i~~~LkpgG~li~~ 284 (351)
+...+++|+++.=.
T Consensus 65 ~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 65 IAPYLKPGAIVTDV 78 (258)
T ss_dssp HHCGS-TTSEEEE-
T ss_pred hhhhcCCCcEEEEe
Confidence 66666666655443
No 421
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=81.47 E-value=3.4 Score=41.40 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC----CC----CC
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LP----FA 245 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~----lp----~~ 245 (351)
..++..|||++|..|.++....+..| ..-|+|+|+-|-- ..+++.-.+.|+.. .+ ..
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------------p~~~c~t~v~dIttd~cr~~l~k~l~ 107 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------------PIPNCDTLVEDITTDECRSKLRKILK 107 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------------cCCccchhhhhhhHHHHHHHHHHHHH
Confidence 44577899999999999999988754 4578999997621 13445445555432 11 11
Q ss_pred CCceeeEEecccc----ccCCCh-------HHHHHHHHhcccCCcEEEEEeeccC
Q 018740 246 SSSIDAVHAGAAI----HCWSSP-------STGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 246 ~~~fD~V~~~~vl----~h~~d~-------~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.-..|+|+.-++- .++.|. ...|+-....|+-||.++--.+...
T Consensus 108 t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~ 162 (780)
T KOG1098|consen 108 TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSE 162 (780)
T ss_pred hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCC
Confidence 2235777754331 111111 2456666778899999655444333
No 422
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=81.46 E-value=18 Score=34.76 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=60.2
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe---cCCC-CC--CCC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISR-LP--FAS 246 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~---d~~~-lp--~~~ 246 (351)
...++.+||=.|+|. |.++..+++......++.+|.++.-++.+++. | -. .+... +... +. ...
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-----G---a~-~v~~~~~~~~~~~v~~~~~~ 252 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-----G---CE-TVDLSKDATLPEQIEQILGE 252 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-----C---Ce-EEecCCcccHHHHHHHHcCC
Confidence 345677887788864 66666666653223466778888888888763 1 11 11111 1100 10 122
Q ss_pred CceeeEEecccccc--------CCChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHC--------WSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h--------~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..+|+|+-.-.-.. -.++...+++..+.+++||.+++...
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 35898884332110 01223578999999999999988654
No 423
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=81.34 E-value=0.89 Score=36.83 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=26.1
Q ss_pred eeCCCCCCCcccccCCCcc-cccccCCccccccccccccccCce
Q 018740 72 LACPICYKPLTWIGDSSLS-IESAAGSSLQCNTCKKTYSGVGTH 114 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~-~~~~~~~~~~C~~C~~~~~~~~g~ 114 (351)
+.||.|+.+-....++..+ ++......-.|.+|+..|..-+-+
T Consensus 1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyErv 44 (147)
T TIGR00244 1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFERA 44 (147)
T ss_pred CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeeec
Confidence 4699999965544433222 222334456799999988664433
No 424
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=81.21 E-value=0.87 Score=36.92 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=26.1
Q ss_pred eeCCCCCCCcccccCCCcc-cccccCCccccccccccccccCce
Q 018740 72 LACPICYKPLTWIGDSSLS-IESAAGSSLQCNTCKKTYSGVGTH 114 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~-~~~~~~~~~~C~~C~~~~~~~~g~ 114 (351)
+.||.|++.-+...++... ++......-.|++|+..|..-+-.
T Consensus 1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE~~ 44 (156)
T COG1327 1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFERA 44 (156)
T ss_pred CCCCCCCCCCCeeeecccccccchhhhhhcccccccccchhhee
Confidence 3699999965544433222 222334455699999988765433
No 425
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=81.19 E-value=1.5 Score=41.89 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=53.0
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
-+.+...++ +|..|-|+-||.|-+...+++.+. +|++-|.+++++++.+.+++.+ -....+++.+..|+.
T Consensus 240 herlsg~fk--~gevv~D~FaGvGPfa~Pa~kK~c--rV~aNDLNpesik~Lk~ni~lN-kv~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 240 HERLSGLFK--PGEVVCDVFAGVGPFALPAAKKGC--RVYANDLNPESIKWLKANIKLN-KVDPSAIEIFNMDAK 309 (495)
T ss_pred HHHHhhccC--CcchhhhhhcCcCccccchhhcCc--EEEecCCCHHHHHHHHHhcccc-ccchhheeeecccHH
Confidence 344555444 478999999999999999999875 9999999999999999987664 111233677666653
No 426
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=81.12 E-value=7.1 Score=35.63 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=49.9
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
+..+.+.+... ...++..|||.=+|+|..+......+. ..+|+|+++..++.+.+++...
T Consensus 208 P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 208 PLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR--RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred hHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHhh
Confidence 45555555555 455688999999999999999888877 8999999999999999998765
No 427
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=80.99 E-value=23 Score=32.62 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=59.2
Q ss_pred cCCCCCCeEEEEcCc-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CCCCcee
Q 018740 173 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSID 250 (351)
Q Consensus 173 l~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~~fD 250 (351)
....++.+||-.|+| .|..+..+++.. +.+|++++.++...+.+++. ... .++...-.... ...+.+|
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~--------g~~-~~~~~~~~~~~~~~~~~~d 227 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL--------GAD-EVVDSGAELDEQAAAGGAD 227 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh--------CCc-EEeccCCcchHHhccCCCC
Confidence 345567789999987 576666666653 34899999999888777542 111 11111100000 0124588
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+++.... . ...+.++.+.|+++|.++....
T Consensus 228 ~vi~~~~-----~-~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 228 VILVTVV-----S-GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred EEEECCC-----c-HHHHHHHHHhcccCCEEEEECC
Confidence 8874321 1 2357888899999999887643
No 428
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=80.96 E-value=30 Score=31.84 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=60.2
Q ss_pred ccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe----cCCC-C-C
Q 018740 172 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA----DISR-L-P 243 (351)
Q Consensus 172 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~----d~~~-l-p 243 (351)
.....++.+||=.|. |.|.++..+++.. +.++++++.+++..+.+++. | ... ++.. +... . .
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l-----G--a~~--vi~~~~~~~~~~~~~~ 202 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL-----G--FDV--AFNYKTVKSLEETLKK 202 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-----C--CCE--EEeccccccHHHHHHH
Confidence 344566889998884 4577877777763 34899999998877777652 1 111 1111 1111 0 0
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
...+.+|+|+- .+.. ..+....+.|+++|.++...
T Consensus 203 ~~~~gvdvv~d-----~~G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 203 ASPDGYDCYFD-----NVGG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred hCCCCeEEEEE-----CCCH--HHHHHHHHHhCcCcEEEEec
Confidence 11246898873 2222 24678889999999998754
No 429
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=80.72 E-value=24 Score=33.38 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=59.6
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCC-eEEEE--ecCCC-C-CCCC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVR--ADISR-L-PFAS 246 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~-i~~~~--~d~~~-l-p~~~ 246 (351)
....++.+||=.|+|. |.++..+++.....+|+++|.++...+.+++. | ... +.... .++.. + ....
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-----G--a~~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-----G--ATDCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-----C--CCeEEcccccchhHHHHHHHHhC
Confidence 3455688999999864 66777777764223799999999988888653 1 111 11000 00000 0 0112
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
+.+|+|+- ....+ ..+.+..+.++++ |.+++...
T Consensus 254 ~g~d~vid-----~~G~~-~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 254 GGVDYSFE-----CIGNV-NVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCCEEEE-----CCCCH-HHHHHHHHHhhcCCCeEEEEec
Confidence 35888873 33233 3567778899886 98876554
No 430
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=80.69 E-value=0.84 Score=41.45 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=23.1
Q ss_pred eCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
.||.||.++..... ...+.+.|+.|+...+-
T Consensus 237 pC~~Cg~~I~~~~~-------~gR~ty~Cp~CQ~~~~~ 267 (269)
T PRK14811 237 PCPRCGTPIEKIVV-------GGRGTHFCPQCQPLRPL 267 (269)
T ss_pred CCCcCCCeeEEEEE-------CCCCcEECCCCcCCCCC
Confidence 69999998765432 23578999999977653
No 431
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=80.51 E-value=3.9 Score=33.40 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=25.3
Q ss_pred EEcCccC--HHHHHHH--HhCCCCeEEEEeCCHHHHHHHHHH
Q 018740 183 DASCGSG--LFSRIFA--KSGLFSLVVALDYSENMLKQCYEF 220 (351)
Q Consensus 183 DiGcG~G--~~~~~l~--~~~~~~~v~gvD~s~~~~~~a~~~ 220 (351)
|||++.| .....+. ..++..+|+++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5544443 456677999999999999988888
No 432
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=80.35 E-value=25 Score=32.59 Aligned_cols=132 Identities=10% Similarity=0.063 Sum_probs=65.7
Q ss_pred HHHhccCCCCCCeEEEEcCcc-CHHHHHHHHh-CCCCeEEEEeCCHHHH-HHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENML-KQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~~-~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
.....++..++.+|+-+|+|. |......... + ..+|+.+|.++.-. +.+++. .. ..... .++.-
T Consensus 168 ~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~--------g~--~~~~~--~~~~~ 234 (311)
T cd05213 168 LAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKEL--------GG--NAVPL--DELLE 234 (311)
T ss_pred HHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHc--------CC--eEEeH--HHHHH
Confidence 333333444678999999975 5544333333 3 34899999997644 333331 11 22221 11111
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
.-...|+|+..-.-.+. ...+..+.+....+|.+++....+.+. .+... .-+....++.++++++.
T Consensus 235 ~l~~aDvVi~at~~~~~---~~~~~~~~~~~~~~~~~viDlavPrdi---~~~v~--------~l~~v~l~~vDdl~~~~ 300 (311)
T cd05213 235 LLNEADVVISATGAPHY---AKIVERAMKKRSGKPRLIVDLAVPRDI---EPEVG--------ELEGVRLYTIDDLEEVV 300 (311)
T ss_pred HHhcCCEEEECCCCCch---HHHHHHHHhhCCCCCeEEEEeCCCCCC---chhhc--------cCCCcEEEEHHHhHHHH
Confidence 11347999976554332 333444433333355666644443221 11100 01134567788887776
Q ss_pred HH
Q 018740 325 RA 326 (351)
Q Consensus 325 ~~ 326 (351)
++
T Consensus 301 ~~ 302 (311)
T cd05213 301 EE 302 (311)
T ss_pred HH
Confidence 64
No 433
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=80.31 E-value=1.3 Score=24.15 Aligned_cols=9 Identities=22% Similarity=0.840 Sum_probs=6.2
Q ss_pred Ccccccccc
Q 018740 97 SSLQCNTCK 105 (351)
Q Consensus 97 ~~~~C~~C~ 105 (351)
..+.|++||
T Consensus 15 v~f~CPnCG 23 (24)
T PF07754_consen 15 VPFPCPNCG 23 (24)
T ss_pred ceEeCCCCC
Confidence 566777776
No 434
>PLN02827 Alcohol dehydrogenase-like
Probab=80.11 E-value=19 Score=34.20 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=57.4
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-----cCCC-C-CCC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-----DISR-L-PFA 245 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-----d~~~-l-p~~ 245 (351)
+..++.+||-.|+|. |.++..+++......|+++|.++...+.+++. | .. .++.. +... + ...
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-----G--a~--~~i~~~~~~~~~~~~v~~~~ 260 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-----G--VT--DFINPNDLSEPIQQVIKRMT 260 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-----C--Cc--EEEcccccchHHHHHHHHHh
Confidence 445688999999865 66666666653223588999998887777653 1 11 11111 1100 0 011
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEe
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT 285 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~ 285 (351)
.+.+|+|+- ....+ ..+....+.|++| |.+++..
T Consensus 261 ~~g~d~vid-----~~G~~-~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 261 GGGADYSFE-----CVGDT-GIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCCEEEE-----CCCCh-HHHHHHHHhhccCCCEEEEEC
Confidence 225888873 22222 3467788889998 9987644
No 435
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=79.92 E-value=4.1 Score=38.83 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=54.5
Q ss_pred CCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
++.+|+=+|+|. |..+...++.. +.+|+.+|.++..++.+...+. ..+.....+...+.-.-..+|+|+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEEc
Confidence 456799999884 66555555543 2389999999876665544311 11111111111111011358999965
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
-.+.--..|.-+-+++.+.++||++++-...
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEec
Confidence 3221111232223556677899988775443
No 436
>PHA02998 RNA polymerase subunit; Provisional
Probab=79.87 E-value=0.88 Score=37.84 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=26.9
Q ss_pred ceeCCCCCCCc-ccccCCCcccccccCCcccccccccccccc
Q 018740 71 VLACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 71 ~l~CP~C~~~l-~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
...||.|+..- ..-.....+.++-+...+.|..|++.+.-+
T Consensus 143 ~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~wkpp 184 (195)
T PHA02998 143 NTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHFKPP 184 (195)
T ss_pred CCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCccCCc
Confidence 37899999932 111223344566667788999999887544
No 437
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=79.67 E-value=29 Score=32.52 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=60.5
Q ss_pred cCCCCCCeEEEEcC-c-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe----cCCC-C-CC
Q 018740 173 LKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA----DISR-L-PF 244 (351)
Q Consensus 173 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~----d~~~-l-p~ 244 (351)
....++.+||=.|+ | .|.++..+++.. +.+|++++.++.-.+.+++.+. .. .++.. ++.. + ..
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lG------a~--~vi~~~~~~~~~~~i~~~ 224 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLG------FD--EAFNYKEEPDLDAALKRY 224 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcC------CC--EEEECCCcccHHHHHHHH
Confidence 44566889999997 3 577877777764 3489999999887777663221 11 11111 1110 0 01
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..+.+|+|+-. .. ...+....+.|+++|.+++..
T Consensus 225 ~~~gvD~v~d~-----vG--~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 225 FPEGIDIYFDN-----VG--GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CCCCcEEEEEC-----CC--HHHHHHHHHHhccCCEEEEEC
Confidence 12358888842 22 236788899999999988754
No 438
>PRK07806 short chain dehydrogenase; Provisional
Probab=79.59 E-value=33 Score=29.95 Aligned_cols=102 Identities=17% Similarity=0.094 Sum_probs=56.4
Q ss_pred CCeEEEEcCccC--H-HHHHHHHhCCCCeEEEEeCCH-HHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC---------
Q 018740 178 GGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSE-NMLKQCYEFVQQESNFPKENFLLVRADISRLPF--------- 244 (351)
Q Consensus 178 ~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~gvD~s~-~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~--------- 244 (351)
++++|-.|+..| . +...+++.+. +|++++-+. ...+...+.+... ..++.++.+|+.+..-
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAA----GGRASAVGADLTDEESVAALMDTAR 79 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 568898886433 2 3344445555 888887653 2333333333332 3467788889876420
Q ss_pred -CCCceeeEEeccccccCC-------------ChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 -ASSSIDAVHAGAAIHCWS-------------SPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 -~~~~fD~V~~~~vl~h~~-------------d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.-+..|+|+.+....... -+..+++.+.+.++.+|.+++..
T Consensus 80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 80 EEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 013578877654321110 12356677777766667766544
No 439
>PRK10445 endonuclease VIII; Provisional
Probab=79.27 E-value=0.89 Score=41.15 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=20.6
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
-.||.||.++..... ...+.+.|++|+.
T Consensus 236 ~~Cp~Cg~~I~~~~~-------~gR~t~~CP~CQ~ 263 (263)
T PRK10445 236 EACERCGGIIEKTTL-------SSRPFYWCPGCQK 263 (263)
T ss_pred CCCCCCCCEeEEEEE-------CCCCcEECCCCcC
Confidence 569999998765432 2357899999963
No 440
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.19 E-value=5.2 Score=36.65 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=58.6
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC------CCCC--------CCeEEEEecCCCC
Q 018740 179 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NFPK--------ENFLLVRADISRL 242 (351)
Q Consensus 179 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------g~~~--------~~i~~~~~d~~~l 242 (351)
.+|-=||+|+ | .++..++..|. +|+.+|.+++.++.+++++...- |... .++. ...|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh
Confidence 3788899985 3 35666677776 99999999999988776643320 1000 1111 12233221
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcc-cCCcEEEEEee
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTTY 286 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~L-kpgG~li~~~~ 286 (351)
...|+|+-+ +.+...-...++.++.+++ +|+.++.-.+.
T Consensus 83 ----~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 83 ----ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred ----CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 346777733 2232222347788888888 67766655443
No 441
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=79.11 E-value=36 Score=31.23 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=59.8
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC----CCCC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFAS 246 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~ 246 (351)
....++.+||-+|+|. |..+..+++.. +.+ ++.++.+++..+.+++. | .. .++..+-... ....
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~-----g---~~-~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL-----G---AT-ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh-----C---Ce-EEecCCCCCHHHHHHhcC
Confidence 3455678999998653 56666666654 235 89999998887777542 1 11 1222111110 1123
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..+|+|+.... ....+.++.+.|+++|.++....
T Consensus 225 ~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 225 YGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 56899985321 13467888999999999887543
No 442
>PRK07109 short chain dehydrogenase; Provisional
Probab=79.05 E-value=29 Score=32.39 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=50.2
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC---------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--------- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~--------- 244 (351)
.+++||=.|++.|. +...+++.|. +|+.++.++..++...+.+... ..++.++.+|+.+..-
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~----g~~~~~v~~Dv~d~~~v~~~~~~~~ 80 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAA----GGEALAVVADVADAEAVQAAADRAE 80 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 35678888875543 3344556665 8999999887777666655543 4578888999866320
Q ss_pred -CCCceeeEEecccc
Q 018740 245 -ASSSIDAVHAGAAI 258 (351)
Q Consensus 245 -~~~~fD~V~~~~vl 258 (351)
.-+.+|+++.+...
T Consensus 81 ~~~g~iD~lInnAg~ 95 (334)
T PRK07109 81 EELGPIDTWVNNAMV 95 (334)
T ss_pred HHCCCCCEEEECCCc
Confidence 12468999876543
No 443
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=78.83 E-value=1.2 Score=34.81 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=23.3
Q ss_pred ccccCCCceeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 64 ~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
+.+..-....|+.|+..+.... ..+.||.||...
T Consensus 63 ~I~~vp~~~~C~~Cg~~~~~~~-----------~~~~CP~Cgs~~ 96 (113)
T PRK12380 63 HIVYKPAQAWCWDCSQVVEIHQ-----------HDAQCPHCHGER 96 (113)
T ss_pred EEEeeCcEEEcccCCCEEecCC-----------cCccCcCCCCCC
Confidence 3444456689999997655432 456799999653
No 444
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=78.79 E-value=3.3 Score=38.20 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=74.7
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---CCCCceeeEEecc
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVHAGA 256 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~~fD~V~~~~ 256 (351)
+++|+=||.|.+...+.+.|. ..+.++|+++.+.+.-+.+. + ....+|+.++. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEecc
Confidence 689999999999999999984 46789999999888888763 3 67889998764 333 599999654
Q ss_pred cccc---------CCChH----HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHH
Q 018740 257 AIHC---------WSSPS----TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323 (351)
Q Consensus 257 vl~h---------~~d~~----~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 323 (351)
-..- +.|+. ..+-++.+.++|.- ++.+.... ... ....-..+.+.+.
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~--~~~ENV~~----l~~--------------~~~~~~~~~i~~~ 129 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKY--FLLENVPG----LLS--------------SKNGEVFKEILEE 129 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SE--EEEEEEGG----GGT--------------GGGHHHHHHHHHH
T ss_pred CCceEeccccccccccccchhhHHHHHHHhhccceE--EEecccce----eec--------------ccccccccccccc
Confidence 3222 23333 22334445567743 33333221 000 0000123678888
Q ss_pred HHHCCCeEEE
Q 018740 324 CRACGLVDFK 333 (351)
Q Consensus 324 l~~aGf~~v~ 333 (351)
|++.|+.+..
T Consensus 130 l~~lGY~v~~ 139 (335)
T PF00145_consen 130 LEELGYNVQW 139 (335)
T ss_dssp HHHTTEEEEE
T ss_pred ccccceeehh
Confidence 8999997654
No 445
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=78.79 E-value=25 Score=32.76 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=57.6
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC---CCC--CCCCC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI---SRL--PFASS 247 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~---~~l--p~~~~ 247 (351)
...++.+||=.|+|. |.++..+++......|++++.+++-.+.+++. | .. .++..+- ..+ .....
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-----G--a~--~~i~~~~~~~~~~~~~~~~~ 227 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-----G--AM--QTFNSREMSAPQIQSVLREL 227 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-----C--Cc--eEecCcccCHHHHHHHhcCC
Confidence 345678999899865 66666666664222478999999887777542 1 11 1111110 000 01123
Q ss_pred cee-eEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 248 SID-AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 248 ~fD-~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+| +|+ +.... ...+.+..+.|++||.+++...
T Consensus 228 ~~d~~v~-----d~~G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 228 RFDQLIL-----ETAGV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCCeEEE-----ECCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 566 554 33333 2467888899999999887653
No 446
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=78.72 E-value=1.2 Score=34.03 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=20.9
Q ss_pred eCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
.||.||..|.... +.+.|+.|+..+..
T Consensus 2 fC~~Cg~~l~~~~-----------~~~~C~~C~~~~~~ 28 (104)
T TIGR01384 2 FCPKCGSLMTPKN-----------GVYVCPSCGYEKEK 28 (104)
T ss_pred CCcccCcccccCC-----------CeEECcCCCCcccc
Confidence 5999999885432 57999999977543
No 447
>PRK06701 short chain dehydrogenase; Provisional
Probab=78.60 E-value=22 Score=32.31 Aligned_cols=104 Identities=19% Similarity=0.210 Sum_probs=59.7
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCH-HHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----CC--
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSE-NMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA-- 245 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~-~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~-- 245 (351)
+++++|-.|++.|. ++..+++.+. +|+.++.+. ...+...+.+... ..++.++.+|+.+.. +.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~i 118 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE----GVKCLLIPGDVSDEAFCKDAVEET 118 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHHH
Confidence 35689999875543 4455556665 888888764 2333333333332 356788899986532 10
Q ss_pred ---CCceeeEEecccccc----CCC----------------hHHHHHHHHhcccCCcEEEEEee
Q 018740 246 ---SSSIDAVHAGAAIHC----WSS----------------PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 246 ---~~~fD~V~~~~vl~h----~~d----------------~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
-+.+|+|+.+....+ +.+ +..+++.+.+.++++|.++....
T Consensus 119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 119 VRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 135798886654321 111 12445566666677787776554
No 448
>PRK12939 short chain dehydrogenase; Provisional
Probab=78.43 E-value=17 Score=31.73 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=46.4
Q ss_pred CCeEEEEcCccCHHH----HHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----CC---
Q 018740 178 GGNIIDASCGSGLFS----RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA--- 245 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~----~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~--- 245 (351)
++++|=.|++ |..+ ..+.+.+. ++++++.++..++...+.+... ..++.++.+|+.+.. +.
T Consensus 7 ~~~vlItGa~-g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (250)
T PRK12939 7 GKRALVTGAA-RGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAA----GGRAHAIAADLADPASVQRFFDAAA 79 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 5678877763 3333 34445565 8999998877666555554433 357888999987532 10
Q ss_pred --CCceeeEEeccc
Q 018740 246 --SSSIDAVHAGAA 257 (351)
Q Consensus 246 --~~~fD~V~~~~v 257 (351)
-+..|+|+.+..
T Consensus 80 ~~~~~id~vi~~ag 93 (250)
T PRK12939 80 AALGGLDGLVNNAG 93 (250)
T ss_pred HHcCCCCEEEECCC
Confidence 146898887654
No 449
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=78.42 E-value=33 Score=31.41 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=60.1
Q ss_pred ccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-----CC
Q 018740 172 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----PF 244 (351)
Q Consensus 172 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-----p~ 244 (351)
.....++.+||=.|. |.|..+..+++.. +.+|++++-+++-.+.+++. | .. .++...-.++ ..
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~-----G--a~--~vi~~~~~~~~~~v~~~ 207 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKEL-----G--FD--AVFNYKTVSLEEALKEA 207 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-----C--CC--EEEeCCCccHHHHHHHH
Confidence 344566788988884 4577777777764 44899999988887777652 1 11 1121111111 01
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..+.+|+|+-. ... ..+.+..+.|+++|.++...
T Consensus 208 ~~~gvd~vld~-----~g~--~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 208 APDGIDCYFDN-----VGG--EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CCCCcEEEEEC-----CCH--HHHHHHHHhhccCCEEEEEc
Confidence 12458988842 222 45788899999999987653
No 450
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.08 E-value=4.8 Score=37.42 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=47.8
Q ss_pred EEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC-CCceeeEEecc
Q 018740 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGA 256 (351)
Q Consensus 181 vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~ 256 (351)
|+|+-||.|.+..-+.+.|. .-+.++|+++.+++.-+.+. +. .++.+|+.++... -..+|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~--------~~-~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANF--------GN-KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhC--------CC-CCCccChhhhhhhhCCCcCEEEecC
Confidence 68999999999999998885 24567999999888887753 22 3456777765421 13489988653
No 451
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=77.88 E-value=19 Score=27.52 Aligned_cols=86 Identities=19% Similarity=0.098 Sum_probs=53.2
Q ss_pred CccCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----CCCCceeeEEeccccc
Q 018740 186 CGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVHAGAAIH 259 (351)
Q Consensus 186 cG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~~fD~V~~~~vl~ 259 (351)
||.|.++..+++.. ....|+.+|.+++.++.+++. .+.++.+|..+.. ..-...|.|++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEccC--
Confidence 45566666555431 123899999999998888763 3778999987642 12246777775432
Q ss_pred cCCChH--HHHHHHHhcccCCcEEEEEee
Q 018740 260 CWSSPS--TGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 260 h~~d~~--~~l~~i~~~LkpgG~li~~~~ 286 (351)
+.. ..+....+.+.|...++....
T Consensus 72 ---~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 ---DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp ---SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred ---CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 332 334455666778877776543
No 452
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=77.45 E-value=1.4 Score=28.40 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=18.2
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
-.||.||.......+ ...+.|..||...
T Consensus 20 ~~CPrCG~gvfmA~H---------~dR~~CGkCgyTe 47 (51)
T COG1998 20 RFCPRCGPGVFMADH---------KDRWACGKCGYTE 47 (51)
T ss_pred ccCCCCCCcchhhhc---------CceeEeccccceE
Confidence 459999963333221 2578999998543
No 453
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.41 E-value=36 Score=31.70 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=58.9
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-----C-CCC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-FAS 246 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-----p-~~~ 246 (351)
...++.+||-.|+|. |..+..+++......++++|.++...+.+++. | .. .++..+-.++ . ...
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-----g--~~--~~v~~~~~~~~~~i~~~~~~ 233 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-----G--AT--DIVDYKNGDVVEQILKLTGG 233 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-----C--Cc--eEecCCCCCHHHHHHHHhCC
Confidence 445678888888763 66666667664333699999998877777652 1 11 1111111111 1 123
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..+|+|+... .. ...+.++.+.|+++|.++...
T Consensus 234 ~~~d~vld~~-----g~-~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 234 KGVDAVIIAG-----GG-QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCcEEEECC-----CC-HHHHHHHHHHhhcCCEEEEec
Confidence 4589888422 22 245788999999999988654
No 454
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=77.40 E-value=1.8 Score=27.37 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=10.1
Q ss_pred Cccccccccccccc
Q 018740 97 SSLQCNTCKKTYSG 110 (351)
Q Consensus 97 ~~~~C~~C~~~~~~ 110 (351)
..+.|++||..+..
T Consensus 31 p~~~C~~CGE~~~~ 44 (46)
T TIGR03831 31 PALVCPQCGEEYLD 44 (46)
T ss_pred CccccccCCCEeeC
Confidence 45679999977654
No 455
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=77.21 E-value=1.3 Score=30.99 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=21.0
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
.-.||.||...... .....+.|+.||..+
T Consensus 28 Sq~C~~CG~~~~~~---------~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 28 SQTCPRCGHRNKKR---------RSGRVFTCPNCGFEM 56 (69)
T ss_pred ccCccCcccccccc---------cccceEEcCCCCCEE
Confidence 46699999866541 234789999998653
No 456
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.16 E-value=1.1 Score=34.79 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=23.4
Q ss_pred cccCCCceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
+.+..-.-+||.||+.-..++ .-...-.|..||..|.
T Consensus 15 pi~~Gl~grCP~CGeGrLF~g--------FLK~~p~C~aCG~dyg 51 (126)
T COG5349 15 PIKRGLRGRCPRCGEGRLFRG--------FLKVVPACEACGLDYG 51 (126)
T ss_pred HHHHHhcCCCCCCCCchhhhh--------hcccCchhhhcccccc
Confidence 333444578999999533333 2234567999997664
No 457
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=76.39 E-value=31 Score=33.36 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=57.4
Q ss_pred HHHHHhccC-CCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 166 FELMKGYLK-PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 166 ~~~l~~~l~-~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.+.+....+ ...+++|+=+|+|. |......++.. +.+|+++|.++.....+.. ....+. ++++.
T Consensus 182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~----------~G~~v~--~leea- 247 (406)
T TIGR00936 182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM----------DGFRVM--TMEEA- 247 (406)
T ss_pred HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh----------cCCEeC--CHHHH-
Confidence 344444322 24588999999997 66655555543 4599999998865444432 112221 22221
Q ss_pred CCCCceeeEEeccccccCCChHHHHH-HHHhcccCCcEEEEEe
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVA-EISRVLRPGGVFVGTT 285 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~-~i~~~LkpgG~li~~~ 285 (351)
. ...|+|+..- .. ...+. +....+|+|++++...
T Consensus 248 l--~~aDVVItaT-----G~-~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 248 A--KIGDIFITAT-----GN-KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred H--hcCCEEEECC-----CC-HHHHHHHHHhcCCCCcEEEEEC
Confidence 1 2468887632 22 33344 5788999999888653
No 458
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=76.33 E-value=1.2 Score=40.51 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=20.2
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~ 105 (351)
..||.||.++..... .....+.|+.|+
T Consensus 245 ~pCprCG~~I~~~~~-------~gR~t~~CP~CQ 271 (272)
T PRK14810 245 EPCLNCKTPIRRVVV-------AGRSSHYCPHCQ 271 (272)
T ss_pred CcCCCCCCeeEEEEE-------CCCccEECcCCc
Confidence 479999998755432 235789999997
No 459
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=76.07 E-value=29 Score=32.09 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=56.9
Q ss_pred CCCCCeEEEEcCc-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC------CCCCC
Q 018740 175 PVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------PFASS 247 (351)
Q Consensus 175 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l------p~~~~ 247 (351)
..++.+||..|+| .|..+..+++......+++++.++...+.+++. . -..++...-..+ -...+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~--------g-~~~vi~~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA--------G-ATDIINPKNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh--------C-CcEEEcCCcchHHHHHHHHcCCC
Confidence 4457788887765 366666666664223788888887777666543 1 111111111110 01235
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.+|+|+.... ....+.++.+.|+++|.++...
T Consensus 236 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 236 GVDCVIEAVG------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCcEEEEccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 6898885322 1246888899999999988653
No 460
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=76.06 E-value=2.2 Score=32.36 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=22.6
Q ss_pred CCceeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 69 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
-.++.||.|+....... .+. ......|+.||..+..
T Consensus 19 pt~f~CP~Cge~~v~v~-----~~k-~~~h~~C~~CG~y~~~ 54 (99)
T PRK14892 19 PKIFECPRCGKVSISVK-----IKK-NIAIITCGNCGLYTEF 54 (99)
T ss_pred CcEeECCCCCCeEeeee-----cCC-CcceEECCCCCCccCE
Confidence 36789999996321111 011 2467889999987754
No 461
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=76.00 E-value=1.2 Score=32.91 Aligned_cols=31 Identities=26% Similarity=0.588 Sum_probs=22.3
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
..+.||.|+..-... ...++..|..|+..+-
T Consensus 34 ~ky~Cp~Cgk~~vkR---------~a~GIW~C~~C~~~~A 64 (90)
T PF01780_consen 34 AKYTCPFCGKTSVKR---------VATGIWKCKKCGKKFA 64 (90)
T ss_dssp S-BEESSSSSSEEEE---------EETTEEEETTTTEEEE
T ss_pred CCCcCCCCCCceeEE---------eeeEEeecCCCCCEEe
Confidence 448899999865332 3458899999987654
No 462
>PRK08265 short chain dehydrogenase; Provisional
Probab=76.00 E-value=29 Score=30.79 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=44.9
Q ss_pred CCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----C-----
Q 018740 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 244 (351)
Q Consensus 178 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----- 244 (351)
++++|-.|++.|. .+..+++.|. +|+.+|.++..++...+.+ ..++.++.+|+.+.. +
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 5688888865442 4455556666 9999998876544443321 245778889987642 0
Q ss_pred CCCceeeEEeccc
Q 018740 245 ASSSIDAVHAGAA 257 (351)
Q Consensus 245 ~~~~fD~V~~~~v 257 (351)
..+..|+++.+..
T Consensus 77 ~~g~id~lv~~ag 89 (261)
T PRK08265 77 RFGRVDILVNLAC 89 (261)
T ss_pred HhCCCCEEEECCC
Confidence 1246898887654
No 463
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=75.99 E-value=24 Score=35.30 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=60.3
Q ss_pred CCeEEEEcCccCHHHHHHHHh---CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----CCCCce
Q 018740 178 GGNIIDASCGSGLFSRIFAKS---GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FASSSI 249 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~~~~f 249 (351)
+++||--| |+|.++..+.++ ....+++-+|.++..+......+... .+...+.++-+|+.+.. +.+-+.
T Consensus 250 gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~--~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 250 GKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK--FPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred CCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh--CCCcceEEEecccccHHHHHHHHhcCCC
Confidence 56777776 456666655543 22468999999998888887777664 12467888999998753 445569
Q ss_pred eeEEeccccccCC
Q 018740 250 DAVHAGAAIHCWS 262 (351)
Q Consensus 250 D~V~~~~vl~h~~ 262 (351)
|+|+...++-|+|
T Consensus 327 d~VfHAAA~KHVP 339 (588)
T COG1086 327 DIVFHAAALKHVP 339 (588)
T ss_pred ceEEEhhhhccCc
Confidence 9999999999997
No 464
>PRK07576 short chain dehydrogenase; Provisional
Probab=75.96 E-value=30 Score=30.79 Aligned_cols=74 Identities=28% Similarity=0.367 Sum_probs=45.9
Q ss_pred CCCeEEEEcCccC--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----C----
Q 018740 177 LGGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~---- 244 (351)
+++++|-.|.+.| . +...+++.+. +|++++.+++.++...+.+... ..++.++..|+.+.. +
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQA----GPEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh----CCceEEEECCCCCHHHHHHHHHHHH
Confidence 3568888886433 2 3344555555 8999999887666554444433 345677888886532 0
Q ss_pred -CCCceeeEEecc
Q 018740 245 -ASSSIDAVHAGA 256 (351)
Q Consensus 245 -~~~~fD~V~~~~ 256 (351)
..+.+|+++.+.
T Consensus 82 ~~~~~iD~vi~~a 94 (264)
T PRK07576 82 DEFGPIDVLVSGA 94 (264)
T ss_pred HHcCCCCEEEECC
Confidence 123579998654
No 465
>PHA02768 hypothetical protein; Provisional
Probab=75.89 E-value=0.97 Score=30.17 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=26.4
Q ss_pred eeCCCCCCCcccccCCCcccccccC-CccccccccccccccCceeee
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAG-SSLQCNTCKKTYSGVGTHFDM 117 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~-~~~~C~~C~~~~~~~~g~~~~ 117 (351)
+.||.||..+..... ...-+... ..+.|..|+..+.....+++.
T Consensus 6 y~C~~CGK~Fs~~~~--L~~H~r~H~k~~kc~~C~k~f~~~s~l~~~ 50 (55)
T PHA02768 6 YECPICGEIYIKRKS--MITHLRKHNTNLKLSNCKRISLRTGEYIEI 50 (55)
T ss_pred cCcchhCCeeccHHH--HHHHHHhcCCcccCCcccceecccceeEEE
Confidence 689999996654321 11111112 377999999987755555443
No 466
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=75.86 E-value=1.2 Score=37.96 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=26.1
Q ss_pred cccCCCceeCCCCCCCccccc--CCCcccccccCCcccccccccccc
Q 018740 65 ASTSKNVLACPICYKPLTWIG--DSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~--~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
..-....+.||+||+.+.... ..-.-.+.+......|.+||..+.
T Consensus 8 ~~~~~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~~ 54 (201)
T COG1779 8 KEEFETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRST 54 (201)
T ss_pred ceeeeeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCccc
Confidence 334456688999999553321 011112334455678999986543
No 467
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=75.85 E-value=1.8 Score=27.16 Aligned_cols=30 Identities=13% Similarity=0.422 Sum_probs=19.8
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
-+.|+.||..+.....- .+.....|+.||.
T Consensus 5 ey~C~~Cg~~fe~~~~~------~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 5 EYRCEECGHEFEVLQSI------SEDDPVPCPECGS 34 (42)
T ss_pred EEEeCCCCCEEEEEEEc------CCCCCCcCCCCCC
Confidence 47899999865443210 1146788999986
No 468
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=75.65 E-value=11 Score=34.46 Aligned_cols=41 Identities=32% Similarity=0.501 Sum_probs=31.1
Q ss_pred CeEEEEcCcc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH
Q 018740 179 GNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFV 221 (351)
Q Consensus 179 ~~vLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 221 (351)
.+|.=||+|. |. ++..++..|. +|+.+|.+++.++.+++++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i 46 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELI 46 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHH
Confidence 3688889985 43 6666677776 8999999999988776543
No 469
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=75.53 E-value=1.1 Score=40.22 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=26.5
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
-...||.|+.-+.... ++.+...|++|++.+..
T Consensus 27 lw~KCp~c~~~~y~~e--------L~~n~~vcp~c~~h~ri 59 (294)
T COG0777 27 LWTKCPSCGEMLYRKE--------LESNLKVCPKCGHHMRI 59 (294)
T ss_pred ceeECCCccceeeHHH--------HHhhhhcccccCccccc
Confidence 4467999999776655 67788999999987765
No 470
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.38 E-value=71 Score=29.78 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=62.1
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-cCCCCC-------
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLP------- 243 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d~~~lp------- 243 (351)
.+..++.++.-+|+|. |.....-++..-.++++|+|++++-.+.|++. .-.+++.. |... |
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f---------GaTe~iNp~d~~~-~i~evi~E 257 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF---------GATEFINPKDLKK-PIQEVIIE 257 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc---------CcceecChhhccc-cHHHHHHH
Confidence 3556788999999886 66555555554457999999999999999874 22223321 3333 2
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
..++.+|.-+ +.+-++. .+++.....+.| |.-++.-.
T Consensus 258 mTdgGvDysf-----Ec~G~~~-~m~~al~s~h~GwG~sv~iGv 295 (375)
T KOG0022|consen 258 MTDGGVDYSF-----ECIGNVS-TMRAALESCHKGWGKSVVIGV 295 (375)
T ss_pred HhcCCceEEE-----EecCCHH-HHHHHHHHhhcCCCeEEEEEe
Confidence 2356677655 5554554 456666667777 77655443
No 471
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=75.38 E-value=37 Score=31.71 Aligned_cols=100 Identities=21% Similarity=0.251 Sum_probs=58.6
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCC-eEEEEecCCCC----C-C-
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISRL----P-F- 244 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~-i~~~~~d~~~l----p-~- 244 (351)
....++.+||-.|+|. |..+..+++.. +.+++++|.++..++.+++. | ... +.....+..++ . .
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~-----G--a~~~i~~~~~~~~~~~~~~~~~t 233 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGF-----G--ADLTLNPKDKSAREVKKLIKAFA 233 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh-----C--CceEecCccccHHHHHHHHHhhc
Confidence 3455688999999965 67766666664 34899999999888888653 1 111 11001000000 0 0
Q ss_pred CCCcee----eEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 245 ASSSID----AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 ~~~~fD----~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
....+| +|+ +....+ ..+....+.|++||.+++...
T Consensus 234 ~~~g~d~~~d~v~-----d~~g~~-~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 234 KARGLRSTGWKIF-----ECSGSK-PGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred ccCCCCCCcCEEE-----ECCCCh-HHHHHHHHHHhcCCeEEEECc
Confidence 112344 444 333333 356777889999999987654
No 472
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=75.38 E-value=2.2 Score=25.20 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=15.8
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
..|++||...... .....|+.|+.
T Consensus 2 ~~C~~CGy~y~~~-----------~~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGE-----------EAPWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCC-----------cCCCcCcCCCC
Confidence 5789998643221 14668999975
No 473
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=75.34 E-value=31 Score=32.43 Aligned_cols=96 Identities=15% Similarity=0.075 Sum_probs=54.0
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE-ecCCCCCCCCCceeeEE
Q 018740 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVH 253 (351)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~-~d~~~lp~~~~~fD~V~ 253 (351)
.++.+||-.|+|. |.++..+++.. ..+++.++.+++....+.+.+ | .. ..+. .+...+.-....+|+|+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~----G--a~--~~i~~~~~~~~~~~~~~~D~vi 249 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHL----G--AD--DYLVSSDAAEMQEAADSLDYII 249 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhc----C--Cc--EEecCCChHHHHHhcCCCcEEE
Confidence 4577888887754 66666666664 347888888876555544322 1 11 1111 11011100112478777
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
- .... ...+....+.|+++|.++....
T Consensus 250 d-----~~g~-~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 250 D-----TVPV-FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred E-----CCCc-hHHHHHHHHHhccCCEEEEECC
Confidence 3 2222 2357778899999999887543
No 474
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.14 E-value=1.3 Score=33.39 Aligned_cols=26 Identities=31% Similarity=0.848 Sum_probs=20.1
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
...||+|+..+.. ..++|++|+....
T Consensus 6 ~~~cPvcg~~~iV-------------TeL~c~~~etTVr 31 (122)
T COG3877 6 INRCPVCGRKLIV-------------TELKCSNCETTVR 31 (122)
T ss_pred CCCCCccccccee-------------EEEecCCCCceEe
Confidence 4679999987654 4689999986643
No 475
>PRK09072 short chain dehydrogenase; Provisional
Probab=75.10 E-value=40 Score=29.85 Aligned_cols=75 Identities=12% Similarity=0.167 Sum_probs=49.8
Q ss_pred CCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC---------C
Q 018740 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---------A 245 (351)
Q Consensus 178 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~---------~ 245 (351)
+.++|=.|++.|. ++..+++.|. +|++++.++..++.....+ .. ..++.++.+|+.+..- .
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-~~----~~~~~~~~~D~~d~~~~~~~~~~~~~ 77 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARL-PY----PGRHRWVVADLTSEAGREAVLARARE 77 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHH-hc----CCceEEEEccCCCHHHHHHHHHHHHh
Confidence 5578888876542 4555666676 8999999887776665544 22 3578888899876420 0
Q ss_pred CCceeeEEeccccc
Q 018740 246 SSSIDAVHAGAAIH 259 (351)
Q Consensus 246 ~~~fD~V~~~~vl~ 259 (351)
.+..|.++.+....
T Consensus 78 ~~~id~lv~~ag~~ 91 (263)
T PRK09072 78 MGGINVLINNAGVN 91 (263)
T ss_pred cCCCCEEEECCCCC
Confidence 24679998876543
No 476
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=75.04 E-value=49 Score=31.16 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=59.1
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-c----CCC-C-CC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-D----ISR-L-PF 244 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d----~~~-l-p~ 244 (351)
....++.+||=+|+|. |.++..+++......|+++|.+++-++.+++. | .. .++.. + +.. + ..
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-----G--a~--~~i~~~~~~~~~~~~v~~~ 252 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-----G--AT--DCVNPKDHDKPIQQVLVEM 252 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-----C--CC--EEEcccccchHHHHHHHHH
Confidence 3455688999888764 66666666664222699999999888877652 1 11 11111 1 100 0 01
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
..+.+|+|+- .... ...+....+.|+++ |.++....
T Consensus 253 ~~~g~d~vid-----~~g~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 253 TDGGVDYTFE-----CIGN-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred hCCCCcEEEE-----CCCC-hHHHHHHHHhhccCCCeEEEEcc
Confidence 1236888874 2222 24577788899987 98887543
No 477
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=74.92 E-value=1.4 Score=40.08 Aligned_cols=28 Identities=29% Similarity=0.639 Sum_probs=20.4
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
..||.||.++..... ...+.+.|+.|+.
T Consensus 246 ~pC~~Cg~~I~~~~~-------~gR~t~~CP~CQ~ 273 (274)
T PRK01103 246 EPCRRCGTPIEKIKQ-------GGRSTFFCPRCQK 273 (274)
T ss_pred CCCCCCCCeeEEEEE-------CCCCcEECcCCCC
Confidence 359999998755432 2357899999974
No 478
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=74.87 E-value=15 Score=35.00 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=53.6
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHH-HHHHHHHHhhhCCCCCCCeEEEEe-cCCCCCCCCCceeeE
Q 018740 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENM-LKQCYEFVQQESNFPKENFLLVRA-DISRLPFASSSIDAV 252 (351)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~-~~~a~~~~~~~~g~~~~~i~~~~~-d~~~lp~~~~~fD~V 252 (351)
.++.+||-.|+|. |.++..+++.. +.++++++.+++. .+.+++. | .. .++.. +...+.-..+.+|+|
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~l-----G--a~--~~i~~~~~~~v~~~~~~~D~v 246 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDRL-----G--AD--SFLVTTDSQKMKEAVGTMDFI 246 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHhC-----C--Cc--EEEcCcCHHHHHHhhCCCcEE
Confidence 3577888888864 66666676664 3479999887543 4444331 1 11 11110 100110001247888
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+-. ...+ ..+.+..+.|+++|.++....
T Consensus 247 id~-----~G~~-~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 247 IDT-----VSAE-HALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred EEC-----CCcH-HHHHHHHHhhcCCCEEEEEcc
Confidence 742 2222 357788899999999987643
No 479
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=74.82 E-value=1.4 Score=40.23 Aligned_cols=27 Identities=30% Similarity=0.581 Sum_probs=20.3
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~ 105 (351)
..||.||.++..... ...+.+.|+.|+
T Consensus 255 ~pC~~Cg~~I~~~~~-------~gR~t~~CP~CQ 281 (282)
T PRK13945 255 KPCRKCGTPIERIKL-------AGRSTHWCPNCQ 281 (282)
T ss_pred CCCCcCCCeeEEEEE-------CCCccEECCCCc
Confidence 479999998765432 235789999996
No 480
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=74.53 E-value=1.8 Score=34.88 Aligned_cols=42 Identities=24% Similarity=0.417 Sum_probs=22.7
Q ss_pred cCCCceeCCCCCCCccccc-CCCc-----c----cccccCCccccccccccc
Q 018740 67 TSKNVLACPICYKPLTWIG-DSSL-----S----IESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~-~~~~-----~----~~~~~~~~~~C~~C~~~~ 108 (351)
.......|+.||....... ..++ + .++.....++||.||+..
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~~ 117 (135)
T PRK03824 66 EEEAVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSRD 117 (135)
T ss_pred ecceEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCCC
Confidence 3346689999997544321 0000 0 001113457899999764
No 481
>PRK08324 short chain dehydrogenase; Validated
Probab=74.42 E-value=33 Score=35.56 Aligned_cols=103 Identities=21% Similarity=0.222 Sum_probs=62.5
Q ss_pred CCCeEEEEcCccC--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----C----
Q 018740 177 LGGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~---- 244 (351)
.+++||-.|++.| . +...+++.|. +|+.+|.++..++.+.+.+.. ..++.++.+|+.+.. +
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~-----~~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGG-----PDRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhc-----cCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4678998886433 3 3444555565 899999998776665544322 136788888886532 1
Q ss_pred -CCCceeeEEeccccccCCC-------------------hHHHHHHHHhcccC---CcEEEEEee
Q 018740 245 -ASSSIDAVHAGAAIHCWSS-------------------PSTGVAEISRVLRP---GGVFVGTTY 286 (351)
Q Consensus 245 -~~~~fD~V~~~~vl~h~~d-------------------~~~~l~~i~~~Lkp---gG~li~~~~ 286 (351)
..+.+|+|+.+...-.... ...+++.+.+.+++ +|.+++...
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 1246899987765322110 22445666777766 677776544
No 482
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.41 E-value=12 Score=34.10 Aligned_cols=95 Identities=13% Similarity=0.118 Sum_probs=54.9
Q ss_pred eEEEEcCcc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh------CCCC--------CCCeEEEEecCCCCC
Q 018740 180 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SNFP--------KENFLLVRADISRLP 243 (351)
Q Consensus 180 ~vLDiGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~g~~--------~~~i~~~~~d~~~lp 243 (351)
+|.=||+|. | .++..+++.+. +|+.+|.+++.++.+.++.... .+.. ..++.+ ..+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh-
Confidence 577888875 3 35566667776 8999999999998877543211 0000 011221 1222211
Q ss_pred CCCCceeeEEeccccccCCCh----HHHHHHHHhcccCCcEEEEEe
Q 018740 244 FASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~----~~~l~~i~~~LkpgG~li~~~ 285 (351)
-...|+|+. .+++. ..++.++.+.++|+.++...+
T Consensus 79 --~~~aD~Vi~-----avpe~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 79 --VADADLVIE-----AVPEKLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred --hcCCCEEEE-----eccCCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 134677774 33333 356778888888877665543
No 483
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=74.31 E-value=30 Score=30.81 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=58.2
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCcee
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 250 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD 250 (351)
....++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++. |. ...+ .... ... .....+|
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~-----g~-~~~~--~~~~-~~~-~~~~~~d 161 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEAL-----GP-ADPV--AADT-ADE-IGGRGAD 161 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHc-----CC-Cccc--cccc-hhh-hcCCCCC
Confidence 3455678888888765 66666666653 235 99999998887776653 10 0111 1000 001 1234689
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
+|+.... ....+.+..+.|+++|.++...
T Consensus 162 ~vl~~~~------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 162 VVIEASG------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEEccC------ChHHHHHHHHHhcCCcEEEEEe
Confidence 8884321 1235778889999999988654
No 484
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=74.20 E-value=30 Score=28.76 Aligned_cols=94 Identities=21% Similarity=0.140 Sum_probs=55.8
Q ss_pred CCCeEEEEcCccCHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC---CC-CCCCceee
Q 018740 177 LGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LP-FASSSIDA 251 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~---lp-~~~~~fD~ 251 (351)
.+.+|+-|||=+-... +.+ ..+..+++.+|++...... ..+ .|+.-|... +| .-.++||+
T Consensus 25 ~~~~iaclstPsl~~~--l~~~~~~~~~~~Lle~D~RF~~~------------~~~-~F~fyD~~~p~~~~~~l~~~~d~ 89 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEA--LKKESKPRIQSFLLEYDRRFEQF------------GGD-EFVFYDYNEPEELPEELKGKFDV 89 (162)
T ss_pred CCCEEEEEeCcHHHHH--HHhhcCCCccEEEEeecchHHhc------------CCc-ceEECCCCChhhhhhhcCCCceE
Confidence 3579999998764433 333 3345589999998754321 223 456666544 22 11578999
Q ss_pred EEeccccccCC-Ch-HHHHHHHHhcccCCcEEEEEeec
Q 018740 252 VHAGAAIHCWS-SP-STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 252 V~~~~vl~h~~-d~-~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
|++-=-+ +. +- .+..+.+..++++++.+++.+..
T Consensus 90 vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~Tg~ 125 (162)
T PF10237_consen 90 VVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCTGE 125 (162)
T ss_pred EEECCCC--CCHHHHHHHHHHHHHHhCccceEEEecHH
Confidence 9974333 11 11 24445555666888888886653
No 485
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=74.05 E-value=1.8 Score=28.09 Aligned_cols=32 Identities=13% Similarity=0.292 Sum_probs=23.1
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
..+.|-.||..+... .....++|+.||+....
T Consensus 5 ~~Y~C~~Cg~~~~~~---------~~~~~irCp~Cg~rIl~ 36 (49)
T COG1996 5 MEYKCARCGREVELD---------QETRGIRCPYCGSRILV 36 (49)
T ss_pred EEEEhhhcCCeeehh---------hccCceeCCCCCcEEEE
Confidence 458899999987432 23478999999976543
No 486
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=74.00 E-value=1.9 Score=33.67 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=22.6
Q ss_pred cccCCCceeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
.+.......|+.|+....... ..+.||.||...
T Consensus 64 I~~~p~~~~C~~Cg~~~~~~~-----------~~~~CP~Cgs~~ 96 (115)
T TIGR00100 64 IEDEPVECECEDCSEEVSPEI-----------DLYRCPKCHGIM 96 (115)
T ss_pred EEeeCcEEEcccCCCEEecCC-----------cCccCcCCcCCC
Confidence 333445689999997655432 357899999754
No 487
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=73.99 E-value=1.9 Score=40.04 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=21.9
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
...||.||++-.... ...+.+.|..||.+..
T Consensus 11 ~~~Cp~Cg~~~iv~d--------~~~Ge~vC~~CG~Vl~ 41 (310)
T PRK00423 11 KLVCPECGSDKLIYD--------YERGEIVCADCGLVIE 41 (310)
T ss_pred CCcCcCCCCCCeeEE--------CCCCeEeecccCCccc
Confidence 367999998432222 3568999999998654
No 488
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=73.98 E-value=14 Score=33.72 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=55.7
Q ss_pred CeEEEEcCcc--CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE-ecCCCCCCCCCceeeEEec
Q 018740 179 GNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 179 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~-~d~~~lp~~~~~fD~V~~~ 255 (351)
.+|+=+|.|- |.+.+.+.+.++...++|.|.+...++.+.+. ++.... .+.... .....|+|+.+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----------gv~d~~~~~~~~~--~~~~aD~Viva 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----------GVIDELTVAGLAE--AAAEADLVIVA 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----------Ccccccccchhhh--hcccCCEEEEe
Confidence 4678888874 56788888888877789999998888777652 111111 111011 13457888854
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEE
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~ 283 (351)
--+. ....+++++...|++|..+.=
T Consensus 72 vPi~---~~~~~l~~l~~~l~~g~iv~D 96 (279)
T COG0287 72 VPIE---ATEEVLKELAPHLKKGAIVTD 96 (279)
T ss_pred ccHH---HHHHHHHHhcccCCCCCEEEe
Confidence 3322 224667777777777765543
No 489
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=73.90 E-value=44 Score=31.43 Aligned_cols=101 Identities=20% Similarity=0.213 Sum_probs=58.3
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe-EEEEec--C-CCC-CCCC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF-LLVRAD--I-SRL-PFAS 246 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i-~~~~~d--~-~~l-p~~~ 246 (351)
....++.+||=+|+|. |..+..+++.....+|+++|.++.-.+.+++. | ...+ .....+ + ..+ ....
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-----g--a~~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-----G--ATDFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-----C--CCcEeccccccchHHHHHHHHhC
Confidence 3455678998888764 66666666664223799999998888877652 1 1111 100000 0 000 0112
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
+.+|+|+-. ... ...+.+..+.|+++ |.++....
T Consensus 253 ~g~d~vid~-----~g~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 253 GGVDYSFEC-----TGN-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCCEEEEC-----CCC-hHHHHHHHHhcccCCCEEEEEcC
Confidence 458888832 222 24577788899885 98877654
No 490
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=73.89 E-value=50 Score=30.13 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=57.0
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceee
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 251 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~ 251 (351)
....++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++. . ...+ .+.... ...+.+|+
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~~-g------~~~~----~~~~~~-~~~~~~d~ 217 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARRL-G------VETV----LPDEAE-SEGGGFDV 217 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHc-C------CcEE----eCcccc-ccCCCCCE
Confidence 3455678888887643 44444445443 34799999999888888762 1 1111 111111 23456999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 252 V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
|+... .. ...+..+.+.|+++|.++..
T Consensus 218 vid~~-----g~-~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 218 VVEAT-----GS-PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred EEECC-----CC-hHHHHHHHHHhhcCCEEEEE
Confidence 98532 11 34577888899999999873
No 491
>PRK05978 hypothetical protein; Provisional
Probab=73.78 E-value=2.4 Score=34.60 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=21.7
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
-...||.||..-.... .-.-.-+|+.||.-|...
T Consensus 32 l~grCP~CG~G~LF~g--------~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 32 FRGRCPACGEGKLFRA--------FLKPVDHCAACGEDFTHH 65 (148)
T ss_pred HcCcCCCCCCCccccc--------ccccCCCccccCCccccC
Confidence 4478999998433322 122355799999776543
No 492
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=73.40 E-value=3 Score=25.43 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=18.3
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
..||.|++.=.... .+....+...|.+|+.
T Consensus 4 ~pCP~CGG~DrFr~-----~d~~g~G~~~C~~Cg~ 33 (37)
T smart00778 4 GPCPNCGGSDRFRF-----DDKDGRGTWFCSVCGA 33 (37)
T ss_pred cCCCCCCCcccccc-----ccCCCCcCEEeCCCCC
Confidence 46999999322211 1113347889999964
No 493
>PLN02494 adenosylhomocysteinase
Probab=73.20 E-value=21 Score=35.18 Aligned_cols=100 Identities=9% Similarity=0.029 Sum_probs=59.0
Q ss_pred HHHHHHhccCC-CCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 165 EFELMKGYLKP-VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 165 ~~~~l~~~l~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
..+.+.+.-+. ..+++|+=+|+|. |......++.. +.+|+++|.++.....+... ...+. ++.+.
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~~----------G~~vv--~leEa 306 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALME----------GYQVL--TLEDV 306 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHhc----------CCeec--cHHHH
Confidence 34455444332 4578999999996 66555555433 44899999988654444331 11211 22221
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
-...|+|+....- ...+..+..+.+|+||+++...
T Consensus 307 ---l~~ADVVI~tTGt-----~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 307 ---VSEADIFVTTTGN-----KDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred ---HhhCCEEEECCCC-----ccchHHHHHhcCCCCCEEEEcC
Confidence 1247999863222 2223477788999999998754
No 494
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=73.16 E-value=2.5 Score=28.61 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=27.0
Q ss_pred cccCCCceeCCCCCCCcccccCCCcccccccCCccccccccccccccCc
Q 018740 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (351)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g 113 (351)
+++.-....||.|+.....-. .....+.|..|+..-..+.|
T Consensus 5 p~S~F~~VkCp~C~n~q~vFs--------ha~t~V~C~~Cg~~L~~PtG 45 (59)
T PRK00415 5 PRSRFLKVKCPDCGNEQVVFS--------HASTVVRCLVCGKTLAEPTG 45 (59)
T ss_pred CCCeEEEEECCCCCCeEEEEe--------cCCcEEECcccCCCcccCCC
Confidence 334445578999998544333 22467899999987765543
No 495
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=73.06 E-value=1.4 Score=37.12 Aligned_cols=36 Identities=25% Similarity=0.528 Sum_probs=27.1
Q ss_pred ccccCCCceeCCCCCCCcccccCCCcccccccCCcccccccccc
Q 018740 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (351)
Q Consensus 64 ~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (351)
+....-..+.||.|...++.+. .....+.|+.||..
T Consensus 106 e~~~~~~~y~C~~~~~r~sfde--------A~~~~F~Cp~Cg~~ 141 (176)
T COG1675 106 EKETENNYYVCPNCHVKYSFDE--------AMELGFTCPKCGED 141 (176)
T ss_pred HhhccCCceeCCCCCCcccHHH--------HHHhCCCCCCCCch
Confidence 4566778899999999877654 33445899999853
No 496
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=73.05 E-value=2.1 Score=33.55 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=23.0
Q ss_pred ccccCCCceeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 64 ~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
+.+.......|+.|+....... ....+||.||+..
T Consensus 64 ~Ie~vp~~~~C~~Cg~~~~~~~----------~~~~~CP~Cgs~~ 98 (117)
T PRK00564 64 DIVDEKVELECKDCSHVFKPNA----------LDYGVCEKCHSKN 98 (117)
T ss_pred EEEecCCEEEhhhCCCccccCC----------ccCCcCcCCCCCc
Confidence 3444446689999997654432 2345699999764
No 497
>PF12773 DZR: Double zinc ribbon
Probab=72.93 E-value=2.7 Score=27.21 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=20.7
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
+...||.||.+|.. .......|++|+....
T Consensus 11 ~~~fC~~CG~~l~~----------~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 11 DAKFCPHCGTPLPP----------PDQSKKICPNCGAENP 40 (50)
T ss_pred cccCChhhcCChhh----------ccCCCCCCcCCcCCCc
Confidence 45779999988771 1235678999987643
No 498
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=72.89 E-value=1.5 Score=34.11 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=24.6
Q ss_pred ceeCCCCCCCc-ccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l-~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
...||.||..- ........+.|+-+...++|..||+.+.
T Consensus 72 ~~~CpkCg~~ea~y~~~QtRsaDEp~T~Fy~C~~Cg~~wr 111 (113)
T COG1594 72 KEKCPKCGNKEAYYWQLQTRSADEPETRFYKCTRCGYRWR 111 (113)
T ss_pred cccCCCCCCceeEEEeeehhccCCCceEEEEecccCCEee
Confidence 46799999931 1111123335556667799999998764
No 499
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=72.86 E-value=73 Score=29.76 Aligned_cols=93 Identities=24% Similarity=0.333 Sum_probs=55.7
Q ss_pred CCCeEEEEcCcc-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC----------CCCCC
Q 018740 177 LGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI----------SRLPF 244 (351)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~----------~~lp~ 244 (351)
++.+||=.|+|. |..+..+++.. +. +|++++.++...+.+++. | ... ++..+- ..+.
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~-----g--~~~--vi~~~~~~~~~~~~~i~~~~- 245 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREF-----G--ADA--TIDIDELPDPQRRAIVRDIT- 245 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHc-----C--CCe--EEcCcccccHHHHHHHHHHh-
Confidence 577888888753 55666666664 34 899999888776666532 1 111 111110 0111
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
....+|+|+-... . ...+.+..+.|+++|.++....
T Consensus 246 ~~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 246 GGRGADVVIEASG-----H-PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred CCCCCcEEEECCC-----C-hHHHHHHHHHhccCCEEEEEcC
Confidence 1246898884321 1 2357788899999999986543
No 500
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=72.85 E-value=2.4 Score=35.31 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=19.3
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (351)
..+||+||....- ...-+||-|++.
T Consensus 134 ~~vC~vCGy~~~g------------e~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEG------------EAPEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccC------------CCCCcCCCCCCh
Confidence 7999999976533 257799999854
Done!