BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018742
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|C Chain C, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|E Chain E, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|G Chain G, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
Length = 184
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 13/154 (8%)
Query: 176 IPSIDEATLDHQRLLERLQVYD---LVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQI 232
I ++D AT++ Q + D + +++ DG C FRA++DQ+Y + HE VR+
Sbjct: 21 IEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHC 80
Query: 233 VAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCY 292
+ L N D + YV + Y+ + ++ G+H+ +QA A++Y + V T
Sbjct: 81 MDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSA 140
Query: 293 IE-------ILPNVERSIRVIYLSFWAEVHYNSI 319
+E I N + IRV S+ +HYNS+
Sbjct: 141 VEPINTFHGIHQNEDEPIRV---SYHRNIHYNSV 171
>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5
Length = 185
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 206 DGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWG 265
DG C FRA++DQ+Y + HE VR+ L N D + YV + Y+ + ++ G
Sbjct: 67 DGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYINRKRKNNCHG 126
Query: 266 DHVTLQAAADLYG--VKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSI 319
+H+ QA A+ Y V+++ ++ + I N + IRV S+ +HYNS+
Sbjct: 127 NHIEXQAXAEXYNRPVEVYQYSTEPINTFHGIHQNEDEPIRV---SYHRNIHYNSV 179
>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba
Length = 184
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 206 DGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWG 265
DG C FRA++DQ+Y + HE VR+ L N D + YV + Y+ + ++ G
Sbjct: 54 DGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYINRKRKNNCHG 113
Query: 266 DHVTLQAAADLYGVKIFVITSFKDTCYIE-------ILPNVERSIRVIYLSFWAEVHYNS 318
+H+ QA A+ Y + V T +E I N + IRV S+ +HYNS
Sbjct: 114 NHIEXQAXAEXYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRV---SYHRNIHYNS 170
Query: 319 I 319
+
Sbjct: 171 V 171
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 16/114 (14%)
Query: 199 VEHKVQGD-GNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPD----------IYEGYV 247
V+HK D G+ + + + A H++ +R IVAQL+ D EGY
Sbjct: 40 VQHKRSRDPGDSAEXXQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYY 99
Query: 248 PMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITS-----FKDTCYIEIL 296
A+ D L +++ G V ++AAA Y F + S F DT I+
Sbjct: 100 THAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSXDAII 153
>pdb|2VFJ|A Chain A, Structure Of The A20 Ovarian Tumour (Otu) Domain
pdb|2VFJ|B Chain B, Structure Of The A20 Ovarian Tumour (Otu) Domain
pdb|2VFJ|C Chain C, Structure Of The A20 Ovarian Tumour (Otu) Domain
pdb|2VFJ|D Chain D, Structure Of The A20 Ovarian Tumour (Otu) Domain
Length = 366
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 181 EATLDHQRLLERLQ-VYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLK 237
+ATL+ Q+ L + V LV K GDGNC A S ++ + +R+ + + LK
Sbjct: 74 QATLESQKKLNWCREVRKLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLK 131
>pdb|3DKB|A Chain A, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|B Chain B, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|C Chain C, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|D Chain D, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|E Chain E, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|F Chain F, Crystal Structure Of A20, 2.5 Angstrom
Length = 390
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 181 EATLDHQRLLERLQ-VYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLK 237
+ATL+ Q+ L + V LV K GDGNC A S ++ + +R+ + + LK
Sbjct: 94 QATLESQKKLNWCREVRKLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLK 151
>pdb|3C0R|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3C0R|C Chain C, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
Length = 212
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Query: 198 LVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIY-EGYVPMAYGDYLE 256
L H V D +C F A++ I++ + +R+ + ++ +NP + + + DY +
Sbjct: 20 LSVHPVLDDNSCLFHAIAYGIFKQDSVRD-LREXVSKEVLNNPVKFNDAILDKPNKDYAQ 78
Query: 257 KMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHY 316
+ + WG + + +D V I+V+ D ++I E L + +HY
Sbjct: 79 WILKXESWGGAIEIGIISDALAVAIYVV----DIDAVKIEKFNEDKFDNYILILFNGIHY 134
Query: 317 NSI 319
+S+
Sbjct: 135 DSL 137
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mg And Zn
pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp And Mn
pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mn And Zn
Length = 1041
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 219 YRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYG 278
Y A+ H +++ L++N I + VP+AY + ++ SG HVTL A +
Sbjct: 164 YSAAKKHGM---KVIYGLEAN--IVDDGVPIAYNETHRRLG-SGSGPFHVTLLAQNETGL 217
Query: 279 VKIFVITSFKDTCYIEILPNVERSIRV 305
+F + S Y +P + RS+ V
Sbjct: 218 KNLFKLVSLSHIQYFHRVPRIPRSVLV 244
>pdb|3BY4|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
Length = 212
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Query: 198 LVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIY-EGYVPMAYGDYLE 256
L H V D +C F A++ I++ + +R+ + ++ +NP + + + DY +
Sbjct: 20 LSVHPVLDDNSCLFHAIAYGIFKQDSVRD-LREMVSKEVLNNPVKFNDAILDKPNKDYAQ 78
Query: 257 KMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHY 316
+ + WG + + +D V I+V+ D ++I E L + +HY
Sbjct: 79 WILKMESWGGAIEIGIISDALAVAIYVV----DIDAVKIEKFNEDKFDNYILILFNGIHY 134
Query: 317 NSI 319
+S+
Sbjct: 135 DSL 137
>pdb|3PRP|A Chain A, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|C Chain C, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
Length = 178
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 192 RLQVYDLVEHKVQ-GDGNCQFRALSDQIY--RTAEHHEFVRQ--QIVAQLKSNPDIYEGY 246
R + D E Q GDGNC + ++++ +T + ++++ + A+ +
Sbjct: 22 RFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL 81
Query: 247 VPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVIT 285
V ++ DYL++M EWG + A G+ I + T
Sbjct: 82 VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWT 120
>pdb|3PSE|A Chain A, Structure Of A Viral Otu Domain Protease Bound To
Interferon- Stimulated Gene 15 (Isg15)
Length = 171
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 192 RLQVYDLVEHKVQ-GDGNCQFRALSDQIY--RTAEHHEFVRQ--QIVAQLKSNPDIYEGY 246
R + D E Q GDGNC + ++++ +T + ++++ + A+ +
Sbjct: 24 RFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL 83
Query: 247 VPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVIT 285
V ++ DYL++M EWG + A G+ I + T
Sbjct: 84 VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWT 122
>pdb|3PHW|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|C Chain C, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|E Chain E, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|G Chain G, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHX|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Isg15
Length = 185
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 192 RLQVYDLVEHKVQ-GDGNCQFRALSDQIY--RTAEHHEFVRQ--QIVAQLKSNPDIYEGY 246
R + D E Q GDGNC + ++++ +T + ++++ + A+ +
Sbjct: 24 RFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL 83
Query: 247 VPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVIT 285
V ++ DYL++M EWG + A G+ I + T
Sbjct: 84 VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWT 122
>pdb|3ZNH|A Chain A, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 183
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 192 RLQVYDLVEHKVQ-GDGNCQFRALSDQIY--RTAEHHEFVRQ--QIVAQLKSNPDIYEGY 246
R + D E Q GDGNC + ++++ +T + ++++ + A+ +
Sbjct: 22 RFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL 81
Query: 247 VPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVIT 285
V ++ DYL++M EWG + A G+ I + T
Sbjct: 82 VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWT 120
>pdb|1T7Q|A Chain A, Crystal Structure Of The F565a Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine And Coa
pdb|1T7Q|B Chain B, Crystal Structure Of The F565a Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine And Coa
Length = 618
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 138 EEWSYPQELTDEYALDGEVGKRLNQ 162
EEW++ ++L DE+ G VG+RL +
Sbjct: 53 EEWAHTKQLVDEFQTSGGVGERLQK 77
>pdb|2H3P|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Acetyl-Coa
pdb|2H3P|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Acetyl-Coa
pdb|2H3U|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Coa
pdb|2H3U|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Coa
Length = 599
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 138 EEWSYPQELTDEYALDGEVGKRLNQ 162
EEW++ ++L DE+ G VG+RL +
Sbjct: 35 EEWAHTKQLVDEFQTSGGVGERLQK 59
>pdb|1T7N|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Crat
pdb|1T7O|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine
Length = 618
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 138 EEWSYPQELTDEYALDGEVGKRLNQ 162
EEW++ ++L DE+ G VG+RL +
Sbjct: 53 EEWAHTKQLVDEFQTSGGVGERLQK 77
>pdb|1NM8|A Chain A, Structure Of Human Carnitine Acetyltransferase: Molecular
Basis For Fatty Acyl Transfer
pdb|1S5O|A Chain A, Structural And Mutational Characterization Of L-Carnitine
Binding To Human Carnitine Acetyltransferase
Length = 616
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 138 EEWSYPQELTDEYALDGEVGKRLNQ 162
EEW++ ++L DE+ G VG+RL +
Sbjct: 40 EEWAHTKQLVDEFQASGGVGERLQK 64
>pdb|2H3W|A Chain A, Crystal Structure Of The S554aM564G MUTANT OF MURINE
Carnitine Acetyltransferase In Complex With
Hexanoylcarnitine And Coa
pdb|2H3W|B Chain B, Crystal Structure Of The S554aM564G MUTANT OF MURINE
Carnitine Acetyltransferase In Complex With
Hexanoylcarnitine And Coa
Length = 599
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 138 EEWSYPQELTDEYALDGEVGKRLNQ 162
EEW++ ++L DE+ G VG+RL +
Sbjct: 35 EEWAHTKQLVDEFQTSGGVGERLQK 59
>pdb|1NDF|A Chain A, Carnitine Acetyltransferase In Complex With Carnitine
pdb|1NDF|B Chain B, Carnitine Acetyltransferase In Complex With Carnitine
pdb|1NDI|A Chain A, Carnitine Acetyltransferase In Complex With Coa
pdb|1NDI|B Chain B, Carnitine Acetyltransferase In Complex With Coa
Length = 596
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 138 EEWSYPQELTDEYALDGEVGKRLNQ 162
EEW++ ++L DE+ G VG+RL +
Sbjct: 32 EEWAHTKQLVDEFQTSGGVGERLQK 56
>pdb|1NDB|A Chain A, Crystal Structure Of Carnitine Acetyltransferase
pdb|1NDB|B Chain B, Crystal Structure Of Carnitine Acetyltransferase
Length = 596
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 138 EEWSYPQELTDEYALDGEVGKRLNQ 162
EEW++ ++L DE+ G VG+RL +
Sbjct: 32 EEWAHTKQLVDEFQTSGGVGERLQK 56
>pdb|1WYT|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYT|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYU|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYV|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
Length = 474
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 26/159 (16%)
Query: 141 SYPQELTDEYALDGEVGKRLNQMVP-----VP--HVPRINGEIPSIDEATL-DHQRLLER 192
S+P L E + G G +L + VP +P H+ + +P +DE TL H L R
Sbjct: 2 SFP--LIFERSRKGRRGLKLVKAVPKAEDLIPKEHLREVPPRLPEVDELTLVRHYTGLSR 59
Query: 193 LQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAY- 251
QV V+ G+C + Y H E R +P +G + + +
Sbjct: 60 RQVG--VDTTFYPLGSCTMK------YNPKLHEEAARLFADLHPYQDPRTAQGALRLMWE 111
Query: 252 -GDYLEKMSESGEWGDHVTLQAAADLYG--VKIFVITSF 287
G+YL+ ++ D +TL+ AA +G I +I ++
Sbjct: 112 LGEYLKALTGM----DAITLEPAAGAHGELTGILIIRAY 146
>pdb|2D6F|C Chain C, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
pdb|2D6F|D Chain D, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
Length = 619
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 44 HFKEDHYETESCDVESDELIAHALQEELSQLAVSEA 79
HF ++Y E+C VE+DE H L E ++AV+ A
Sbjct: 68 HFHYENYHEETCLVEADEEPPHPLNPEALEIAVTIA 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,818,002
Number of Sequences: 62578
Number of extensions: 517196
Number of successful extensions: 1051
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1038
Number of HSP's gapped (non-prelim): 28
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)