Query 018742
Match_columns 351
No_of_seqs 233 out of 1091
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:39:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2605 OTU (ovarian tumor)-li 100.0 1.2E-36 2.6E-41 301.3 11.7 332 2-341 1-366 (371)
2 PF02338 OTU: OTU-like cystein 99.9 1.2E-25 2.5E-30 187.3 8.1 107 204-316 1-121 (121)
3 KOG2606 OTU (ovarian tumor)-li 99.9 1.8E-23 3.9E-28 200.3 10.7 140 181-323 142-299 (302)
4 KOG3288 OTU-like cysteine prot 99.6 4.3E-16 9.3E-21 147.4 7.0 124 197-323 109-234 (307)
5 PF10275 Peptidase_C65: Peptid 99.4 8.2E-13 1.8E-17 124.1 12.1 94 227-321 141-244 (244)
6 KOG3991 Uncharacterized conser 99.3 5.6E-12 1.2E-16 118.0 8.2 96 226-322 157-256 (256)
7 COG5539 Predicted cysteine pro 98.5 3.7E-08 8.1E-13 95.3 2.5 111 205-321 119-231 (306)
8 COG5539 Predicted cysteine pro 98.5 3.2E-08 7E-13 95.7 0.7 121 195-319 168-304 (306)
9 PF05415 Peptidase_C36: Beet n 80.7 4.9 0.00011 33.6 5.7 64 203-284 3-68 (104)
10 PF05412 Peptidase_C33: Equine 54.6 8.9 0.00019 32.8 2.0 84 203-323 4-87 (108)
11 PRK09784 hypothetical protein; 52.5 7.6 0.00016 38.1 1.4 24 193-216 195-218 (417)
12 PF05381 Peptidase_C21: Tymovi 31.3 2.4E+02 0.0052 24.1 7.0 90 206-318 2-94 (104)
13 COG5007 Predicted transcriptio 31.2 31 0.00067 28.1 1.6 54 187-240 4-61 (80)
14 KOG4634 Mitochondrial F1F0-ATP 30.8 47 0.001 28.2 2.7 24 55-78 53-76 (105)
15 TIGR02934 nifT_nitrog probable 23.1 9.6 0.00021 30.1 -2.5 33 237-269 6-40 (67)
16 PRK10963 hypothetical protein; 23.1 60 0.0013 30.5 2.2 17 230-246 6-22 (223)
17 KOG2605 OTU (ovarian tumor)-li 22.6 18 0.00038 37.2 -1.5 92 192-283 49-140 (371)
18 smart00718 DM4_12 DM4/DM12 fam 21.6 78 0.0017 26.0 2.4 72 185-268 9-81 (95)
19 TIGR01078 arcA arginine deimin 21.3 1.5E+02 0.0033 30.6 4.9 73 174-258 34-106 (405)
No 1
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=301.30 Aligned_cols=332 Identities=30% Similarity=0.365 Sum_probs=255.8
Q ss_pred ccccCCCCceecccccccCCCCCC----CCCCCcccCCCC-CCcccccccccccccccccccchHHHHHHHHHHHHHHhh
Q 018742 2 ITFEQDSDVLQWGLQLFESDPYLN----CGYTNTVTPDDE-SYYYGQHFKEDHYETESCDVESDELIAHALQEELSQLAV 76 (351)
Q Consensus 2 ~~~e~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~d~~ia~~~q~e~~~~~~ 76 (351)
+.++++|.+++|.|+.+..+.... .|-++.+.|.-. ++....+.+...+......|++|++||+++|++++.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~~g~~~~~~~~~r~~~v~~~~~~~~~~~d~~~~~e~ 80 (371)
T KOG2605|consen 1 TFREEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEPFGMGTDGYNNKRYGEVDRDFMIARGHQDEVLTVED 80 (371)
T ss_pred CCccccCchHHHHhhcCCCCcccccchhhhhccccccCCCCCcCCccceeccccCccccchhhhhhhhcccccccccccH
Confidence 357889999999999887555444 466767666555 777778888455566677899999999999999999999
Q ss_pred hhhcCCCCcccccccCccccCC-CCcCCCC---CccCCCCCC-----ccccC--------------CCCCCCCCCCCccc
Q 018742 77 SEASESPHETEENLQGPVFQHG-WVNHSVG---GYYSGQETG-----QEEAD--------------DTQPSSLCSSHEEV 133 (351)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~g~~~~-----~~~~~--------------~~~~~~~~s~~~~~ 133 (351)
+|.+...+.-.. ++..++ |..++-. +||+-+... .+..+ ...+.++.++++..
T Consensus 81 ~e~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~s~~~~~~~~~~~~~~~~~~~~~~sd~ 156 (371)
T KOG2605|consen 81 AEMAAICQSVLF----KVLYQERFKLPSDTPCNGENSPMCSFHSRRGNESFQAASFGGLEIDLEVERNSPEWLGQSPSDP 156 (371)
T ss_pred HHHhhHHhhhhh----hhhhhhcccCCCCCcccccCCCCCcccccccccccccccccccccchhhhccCchhcccccccc
Confidence 999988764433 444444 3332222 222111111 11100 01111112222211
Q ss_pred ccCCCCCccccccchh-hhhhhHHhhhhccCCCCCCCCCCCCCCCCCchhhHHHHHHHHHhhcCCeEEEEecCCCChHHH
Q 018742 134 SYCGEEWSYPQELTDE-YALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFR 212 (351)
Q Consensus 134 ~~~~~~~~~~~~~~d~-~~~d~~vgkrl~~~~p~p~~p~~ng~iP~~dea~~d~~rL~~~L~~~GL~i~~VpGDGNCLFR 212 (351)
.....+.+.... ...+.++|.++|++.|++++|.+++.+|+..+..++++++.+++..+|+.+++|.+||||+||
T Consensus 157 ----~~~~~~~~~~~~~~~~~~~~g~~in~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~e~~Kv~edGsC~fr 232 (371)
T KOG2605|consen 157 ----LRSVPSMEAIHARHPEAKEVGVRINDYNPKVLVPFINGLPPSEEEPQSAHERSAKRKKHFGFEYKKVVEDGSCLFR 232 (371)
T ss_pred ----ccccccccchhhccccchhhcccccCCCccccccccccCCCchHHHHHHHHHHHHHHHHhhhhhhhcccCCchhhh
Confidence 122233322221 256788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHhhCcccccCcCCCcHHHHHHhhccCCCCCchHHHHHHHH--HhCCcEEEEEccCCc
Q 018742 213 ALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAAD--LYGVKIFVITSFKDT 290 (351)
Q Consensus 213 AlS~qL~g~q~~H~~LRk~vV~yL~~npd~y~~fv~~~~~eYl~~M~k~g~WGg~iELqAlA~--~y~v~I~V~ss~~~~ 290 (351)
|+|+|+|++.+.|.++|+++++++++++++|+.|+++++.+|+++|++++.||+|+|+||+|. -+..++.++++.+.+
T Consensus 233 a~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t 312 (371)
T KOG2605|consen 233 ALADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDT 312 (371)
T ss_pred ccHHHhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999998 667788888889999
Q ss_pred eEEEEcCCCCCCCCeEEEEecCCCcceeeecC--CCCC-Cchhhhhhhhhhhcc
Q 018742 291 CYIEILPNVERSIRVIYLSFWAEVHYNSIYPA--GDVP-TFETKKKKRWRLFRN 341 (351)
Q Consensus 291 ~~iei~P~~~~~~~~I~Lsy~~~~HYdSV~~~--~d~p-~~~~~~~~~w~~~~~ 341 (351)
+++.+.|....+...+++.||...||+.++.- ...+ ....++++.||+|++
T Consensus 313 ~~~~~~~~~~~~~~~~~~n~~~~~h~~~~~~~~~~~~s~~~~~~~~r~~~~~~~ 366 (371)
T KOG2605|consen 313 CYIQTPPAIEESVKMEKYNFWVEVHYNTARHSGKSADSATLEEKTKRKSLRRGT 366 (371)
T ss_pred ceeccCcccccchhhhhhcccchhhhhhcccccccccccchhhccCCCchhhcc
Confidence 99988887778888899999999999999984 3333 444566777777765
No 2
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.92 E-value=1.2e-25 Score=187.26 Aligned_cols=107 Identities=36% Similarity=0.610 Sum_probs=92.3
Q ss_pred cCCCChHHHHHHHHHh----cCchhHHHHHHHHHHHHh-hCcccccCcCCCcHHHHHHhhccCCCCCchHHHHHHHHHhC
Q 018742 204 QGDGNCQFRALSDQIY----RTAEHHEFVRQQIVAQLK-SNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYG 278 (351)
Q Consensus 204 pGDGNCLFRAlS~qL~----g~q~~H~~LRk~vV~yL~-~npd~y~~fv~~~~~eYl~~M~k~g~WGg~iELqAlA~~y~ 278 (351)
||||||||||||+||+ +++..|.+||++|++||+ +|++.|..|+..+ +|+++|+|||++||+|+|++|+
T Consensus 1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~a~a~~~~ 74 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQALANVLN 74 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHHHHHHHhC
Confidence 7999999999999999 999999999999999999 9999998887544 8999999999999999999999
Q ss_pred CcEEEEEccCCce--EEEEcC--CCCCCCCeEEEEecC-----CCcc
Q 018742 279 VKIFVITSFKDTC--YIEILP--NVERSIRVIYLSFWA-----EVHY 316 (351)
Q Consensus 279 v~I~V~ss~~~~~--~iei~P--~~~~~~~~I~Lsy~~-----~~HY 316 (351)
++|+|++...... ++.+.+ ......++|+|+|.. ++||
T Consensus 75 ~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 75 RPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp SEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred CeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence 9999998865543 333433 124567899999998 9998
No 3
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.8e-23 Score=200.25 Aligned_cols=140 Identities=18% Similarity=0.346 Sum_probs=121.0
Q ss_pred hhhHHHHHHHHHhhcCCeEEEEecCCCChHHHHHHHHHhcC---chhHHHHHHHHHHHHhhCcccccCcCC---------
Q 018742 181 EATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRT---AEHHEFVRQQIVAQLKSNPDIYEGYVP--------- 248 (351)
Q Consensus 181 ea~~d~~rL~~~L~~~GL~i~~VpGDGNCLFRAlS~qL~g~---q~~H~~LRk~vV~yL~~npd~y~~fv~--------- 248 (351)
...++.+.|.+.|...||..++||.||+|||+||++||.-. .-....||.++++||++|.+.|.+|+.
T Consensus 142 ~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~ 221 (302)
T KOG2606|consen 142 AKSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLG 221 (302)
T ss_pred hhhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCC
Confidence 44677889999999999999999999999999999999643 246789999999999999999999873
Q ss_pred -CcHHHHHHhhccCCCCCchHHHHHHHHHhCCcEEEEEccCCceEEEEcCCCCCCCCeEEEEecC-----CCcceeeecC
Q 018742 249 -MAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWA-----EVHYNSIYPA 322 (351)
Q Consensus 249 -~~~~eYl~~M~k~g~WGg~iELqAlA~~y~v~I~V~ss~~~~~~iei~P~~~~~~~~I~Lsy~~-----~~HYdSV~~~ 322 (351)
.+|+.||+.|+.++.|||++||.|+|.+|++||.||...++ .+.+++...+ .++|.|+|+. |.||||+.+.
T Consensus 222 ~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p--~~~~geey~k-d~pL~lvY~rH~y~LGeHYNS~~~~ 298 (302)
T KOG2606|consen 222 PEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGP--ILEYGEEYGK-DKPLILVYHRHAYGLGEHYNSVTPL 298 (302)
T ss_pred HHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCC--ceeechhhCC-CCCeeeehHHhHHHHHhhhcccccc
Confidence 25999999999999999999999999999999999998754 3455543333 6899999985 6999999875
Q ss_pred C
Q 018742 323 G 323 (351)
Q Consensus 323 ~ 323 (351)
.
T Consensus 299 ~ 299 (302)
T KOG2606|consen 299 K 299 (302)
T ss_pred c
Confidence 4
No 4
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.3e-16 Score=147.35 Aligned_cols=124 Identities=23% Similarity=0.396 Sum_probs=103.7
Q ss_pred CeEEEEecCCCChHHHHHHHHHhcCchh-HHHHHHHHHHHHhhCcccccCc-CCCcHHHHHHhhccCCCCCchHHHHHHH
Q 018742 197 DLVEHKVQGDGNCQFRALSDQIYRTAEH-HEFVRQQIVAQLKSNPDIYEGY-VPMAYGDYLEKMSESGEWGDHVTLQAAA 274 (351)
Q Consensus 197 GL~i~~VpGDGNCLFRAlS~qL~g~q~~-H~~LRk~vV~yL~~npd~y~~f-v~~~~~eYl~~M~k~g~WGg~iELqAlA 274 (351)
-|.++.||.|+.|||+||++-+.+.-.. -.++|+.+.+.+.+||+.|+.. ++..-.+||.++.++..|||.|||..+|
T Consensus 109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS 188 (307)
T KOG3288|consen 109 VLSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILS 188 (307)
T ss_pred eeEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeeh
Confidence 4566789999999999999999876432 3599999999999999999875 5778899999999999999999999999
Q ss_pred HHhCCcEEEEEccCCceEEEEcCCCCCCCCeEEEEecCCCcceeeecCC
Q 018742 275 DLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAG 323 (351)
Q Consensus 275 ~~y~v~I~V~ss~~~~~~iei~P~~~~~~~~I~Lsy~~~~HYdSV~~~~ 323 (351)
+.|++.|++++... ..|..+....+....++|.| +|.|||++....
T Consensus 189 ~~ygveI~vvDiqt--~rid~fged~~~~~rv~lly-dGIHYD~l~m~~ 234 (307)
T KOG3288|consen 189 DYYGVEICVVDIQT--VRIDRFGEDKNFDNRVLLLY-DGIHYDPLAMNE 234 (307)
T ss_pred hhhceeEEEEecce--eeehhcCCCCCCCceEEEEe-cccccChhhhcc
Confidence 99999999998743 33444444455667788888 799999998655
No 5
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.44 E-value=8.2e-13 Score=124.06 Aligned_cols=94 Identities=31% Similarity=0.423 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhCcccccCcCC----CcHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEccCC---c--eEEEEc
Q 018742 227 FVRQQIVAQLKSNPDIYEGYVP----MAYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKD---T--CYIEIL 296 (351)
Q Consensus 227 ~LRk~vV~yL~~npd~y~~fv~----~~~~eYl~-~M~k~g~WGg~iELqAlA~~y~v~I~V~ss~~~---~--~~iei~ 296 (351)
.+|..+..||+.|++.|.+|++ .++++||. .+...+.=.||+.|.|||++++++|.|+...++ . ....+.
T Consensus 141 flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~ 220 (244)
T PF10275_consen 141 FLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFP 220 (244)
T ss_dssp HHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES
T ss_pred HHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCC
Confidence 6888999999999999999996 68999995 577778889999999999999999999988764 1 122332
Q ss_pred CCCCCCCCeEEEEecCCCcceeeec
Q 018742 297 PNVERSIRVIYLSFWAEVHYNSIYP 321 (351)
Q Consensus 297 P~~~~~~~~I~Lsy~~~~HYdSV~~ 321 (351)
|......+.|.|.| .++|||.++|
T Consensus 221 ~~~~~~~~~i~LLy-rpgHYdIly~ 244 (244)
T PF10275_consen 221 PDNESQEPQITLLY-RPGHYDILYP 244 (244)
T ss_dssp -SSTTSS-SEEEEE-ETBEEEEEEE
T ss_pred CccCCCCCEEEEEE-cCCccccccC
Confidence 22345678899999 5779999986
No 6
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=5.6e-12 Score=118.04 Aligned_cols=96 Identities=22% Similarity=0.335 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhCcccccCcCC--CcHHHHHHh-hccCCCCCchHHHHHHHHHhCCcEEEEEccCCce-EEEEcCCCCC
Q 018742 226 EFVRQQIVAQLKSNPDIYEGYVP--MAYGDYLEK-MSESGEWGDHVTLQAAADLYGVKIFVITSFKDTC-YIEILPNVER 301 (351)
Q Consensus 226 ~~LRk~vV~yL~~npd~y~~fv~--~~~~eYl~~-M~k~g~WGg~iELqAlA~~y~v~I~V~ss~~~~~-~iei~P~~~~ 301 (351)
..+|..+..+|++|+++|.+||+ ++.++||+. +.-...=.|||+|-||++.+++.|.|....++.. .+.-.+-...
T Consensus 157 ~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fpe~ 236 (256)
T KOG3991|consen 157 MYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFPEA 236 (256)
T ss_pred HHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCccc
Confidence 47899999999999999999996 589999974 4555566899999999999999999998877543 1111111245
Q ss_pred CCCeEEEEecCCCcceeeecC
Q 018742 302 SIRVIYLSFWAEVHYNSIYPA 322 (351)
Q Consensus 302 ~~~~I~Lsy~~~~HYdSV~~~ 322 (351)
+.+.|+|.| ...|||.||++
T Consensus 237 s~P~I~LLY-rpGHYdilY~~ 256 (256)
T KOG3991|consen 237 SAPEIYLLY-RPGHYDILYKK 256 (256)
T ss_pred cCceEEEEe-cCCccccccCC
Confidence 678899999 79999999974
No 7
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.7e-08 Score=95.27 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=92.3
Q ss_pred CCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhhCcccccCcCC-CcHHHHHHhhccCCCCC-chHHHHHHHHHhCCcEE
Q 018742 205 GDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVP-MAYGDYLEKMSESGEWG-DHVTLQAAADLYGVKIF 282 (351)
Q Consensus 205 GDGNCLFRAlS~qL~g~q~~H~~LRk~vV~yL~~npd~y~~fv~-~~~~eYl~~M~k~g~WG-g~iELqAlA~~y~v~I~ 282 (351)
.|..|+|+|.+..++.- .-.++|..+...+.+|||.|...+. -+--.|+.++.+...|| |+||+.++++.+++.|+
T Consensus 119 ~d~srl~q~~~~~l~~a--sv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~ 196 (306)
T COG5539 119 DDNSRLFQAERYSLRDA--SVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIH 196 (306)
T ss_pred CchHHHHHHHHhhhhhh--hHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeee
Confidence 67999999999998753 6689999999999999999999885 47789999999999999 99999999999999999
Q ss_pred EEEccCCceEEEEcCCCCCCCCeEEEEecCCCcceeeec
Q 018742 283 VITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYP 321 (351)
Q Consensus 283 V~ss~~~~~~iei~P~~~~~~~~I~Lsy~~~~HYdSV~~ 321 (351)
++....+.. .++.+ .+....|.+.| .+.|||...-
T Consensus 197 ~Vdv~~~~~-dr~~~--~~~~q~~~i~f-~g~hfD~~t~ 231 (306)
T COG5539 197 VVDVDKDSE-DRYNS--HPYVQRISILF-TGIHFDEETL 231 (306)
T ss_pred eeecchhHH-hhccC--Chhhhhhhhhh-cccccchhhh
Confidence 999876531 12332 33334577777 6899999873
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.2e-08 Score=95.72 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=86.7
Q ss_pred cCCeEEEEecCCCChHHHHHHHHHhcC-----chhHHHHHHHHHHHHhhCcccccCcCC-------CcHHHHHHhhccCC
Q 018742 195 VYDLVEHKVQGDGNCQFRALSDQIYRT-----AEHHEFVRQQIVAQLKSNPDIYEGYVP-------MAYGDYLEKMSESG 262 (351)
Q Consensus 195 ~~GL~i~~VpGDGNCLFRAlS~qL~g~-----q~~H~~LRk~vV~yL~~npd~y~~fv~-------~~~~eYl~~M~k~g 262 (351)
..+++-..+.|||+|+|-+||+||.-. -+.-+.+|-.=..|..++...|.++.- ..|++|++.|..+.
T Consensus 168 ~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~~~~a 247 (306)
T COG5539 168 ATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEVLFDA 247 (306)
T ss_pred HHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhhcccc
Confidence 345555689999999999999998532 122355565556666667777777641 37999999999999
Q ss_pred CCCchHHHHHHHHHhCCcEEEEEccCCceEEEEcCCCCCCCCeEEEEec----CCCcceee
Q 018742 263 EWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFW----AEVHYNSI 319 (351)
Q Consensus 263 ~WGg~iELqAlA~~y~v~I~V~ss~~~~~~iei~P~~~~~~~~I~Lsy~----~~~HYdSV 319 (351)
.||..+|+++||..|++|+.++...++ .+...+...+. +..+.|+ +-+|||++
T Consensus 248 ~~g~~~ei~qLas~lk~~~~~~nT~~~--~ik~n~c~~~~--~~e~~~~~Ha~a~GH~n~~ 304 (306)
T COG5539 248 SDGITIEIQQLASLLKNPHYYTNTASP--SIKCNICGTGF--VGEKDYYAHALATGHYNFG 304 (306)
T ss_pred cccchHHHHHHHHHhcCceEEeecCCc--eEEeecccccc--chhhHHHHHHHhhcCcccc
Confidence 999999999999999999999987654 45544432222 2333333 23499986
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=80.72 E-value=4.9 Score=33.61 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=43.8
Q ss_pred ecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhhCcccccCcCCCcHHHHHHhhc--cCCCCCchHHHHHHHHHhCCc
Q 018742 203 VQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMS--ESGEWGDHVTLQAAADLYGVK 280 (351)
Q Consensus 203 VpGDGNCLFRAlS~qL~g~q~~H~~LRk~vV~yL~~npd~y~~fv~~~~~eYl~~M~--k~g~WGg~iELqAlA~~y~v~ 280 (351)
+..|+|||.-|||..|.-+-+.-. .-|..|.. ..+.|+.+++ ++.+|-|- ..+|+.+++.
T Consensus 3 ~sR~NNCLVVAis~~L~~T~e~l~-------~~M~An~~--------~i~~y~~W~r~~~~STW~DC---~mFA~~LkVs 64 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLGVTLEKLD-------NLMQANVS--------TIKKYHTWLRKKRPSTWDDC---RMFADALKVS 64 (104)
T ss_pred ccCCCCeEeehHHHHhcchHHHHH-------HHHHhhHH--------HHHHHHHHHhcCCCCcHHHH---HHHHHhheeE
Confidence 567999999999999976533221 12222221 3677887665 56789664 4699999999
Q ss_pred EEEE
Q 018742 281 IFVI 284 (351)
Q Consensus 281 I~V~ 284 (351)
|.+-
T Consensus 65 m~vk 68 (104)
T PF05415_consen 65 MQVK 68 (104)
T ss_pred EEEE
Confidence 9873
No 10
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=54.58 E-value=8.9 Score=32.84 Aligned_cols=84 Identities=13% Similarity=0.242 Sum_probs=45.6
Q ss_pred ecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhhCcccccCcCCCcHHHHHHhhccCCCCCchHHHHHHHHHhCCcEE
Q 018742 203 VQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIF 282 (351)
Q Consensus 203 VpGDGNCLFRAlS~qL~g~q~~H~~LRk~vV~yL~~npd~y~~fv~~~~~eYl~~M~k~g~WGg~iELqAlA~~y~v~I~ 282 (351)
-|+||+|.+|+||..+++ |.. ..|.. .|-+.-+....|.++-.|.-+-..++.|+-
T Consensus 4 PP~DG~CG~H~i~aI~n~---------------m~~--~~~t~-------~l~~~~r~~d~W~~dedl~~~iq~l~lPat 59 (108)
T PF05412_consen 4 PPGDGSCGWHCIAAIMNH---------------MMG--GEFTT-------PLPQRNRPSDDWADDEDLYQVIQSLRLPAT 59 (108)
T ss_pred CCCCCchHHHHHHHHHHH---------------hhc--cCCCc-------cccccCCChHHccChHHHHHHHHHccCcee
Confidence 489999999999986643 211 01111 111122334568877666655555566655
Q ss_pred EEEccCCceEEEEcCCCCCCCCeEEEEecCCCcceeeecCC
Q 018742 283 VITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAG 323 (351)
Q Consensus 283 V~ss~~~~~~iei~P~~~~~~~~I~Lsy~~~~HYdSV~~~~ 323 (351)
+.. +..-....++.-..+.|+..-+..+
T Consensus 60 ~~~-------------~~~Cp~ArYv~~l~~qHW~V~~~~g 87 (108)
T PF05412_consen 60 LDR-------------NGACPHARYVLKLDGQHWEVSVRKG 87 (108)
T ss_pred ccC-------------CCCCCCCEEEEEecCceEEEEEcCC
Confidence 421 1122223344444678888777665
No 11
>PRK09784 hypothetical protein; Provisional
Probab=52.54 E-value=7.6 Score=38.14 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.0
Q ss_pred hhcCCeEEEEecCCCChHHHHHHH
Q 018742 193 LQVYDLVEHKVQGDGNCQFRALSD 216 (351)
Q Consensus 193 L~~~GL~i~~VpGDGNCLFRAlS~ 216 (351)
-+.+||+--+|.|||-||.|||--
T Consensus 195 n~~~glkyapvdgdgycllrailv 218 (417)
T PRK09784 195 NKTYGLKYAPVDGDGYCLLRAILV 218 (417)
T ss_pred hhhhCceecccCCCchhHHHHHHH
Confidence 456999999999999999999753
No 12
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=31.31 E-value=2.4e+02 Score=24.13 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=55.6
Q ss_pred CCChHHHHHHHHHhcCch-hHHHHHHHHHHHHhhCcccccCcCCCcHHHHHHhhccCCCCCchHHHHHHHHHhCCcEEEE
Q 018742 206 DGNCQFRALSDQIYRTAE-HHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVI 284 (351)
Q Consensus 206 DGNCLFRAlS~qL~g~q~-~H~~LRk~vV~yL~~npd~y~~fv~~~~~eYl~~M~k~g~WGg~iELqAlA~~y~v~I~V~ 284 (351)
.-+||--|||.|..-.++ -+..|...+=+=+..|++. ++-|--=| .+.|+|-.|+....|.
T Consensus 2 ~~~CLL~A~s~at~~~~~~LW~~L~~~lPDSlL~n~ei----------------~~~GLSTD--hltaLa~~~~~~~~~h 63 (104)
T PF05381_consen 2 ALDCLLVAISQATSISPETLWATLCEILPDSLLDNPEI----------------RTLGLSTD--HLTALAYRYHFQCTFH 63 (104)
T ss_pred CcceeHHhhhhhhCCCHHHHHHHHHHhCchhhcCchhh----------------hhcCCcHH--HHHHHHHHHheEEEEE
Confidence 358999999999865532 3444433333333333322 22232223 3569999999999999
Q ss_pred EccCCceEEEEcCCCCCCCCeEEEEecCC--Cccee
Q 018742 285 TSFKDTCYIEILPNVERSIRVIYLSFWAE--VHYNS 318 (351)
Q Consensus 285 ss~~~~~~iei~P~~~~~~~~I~Lsy~~~--~HYdS 318 (351)
+..+ .+.++. ......+.+.|..| .||..
T Consensus 64 s~~~---~~~~Gi--~~as~~~~I~ht~G~p~HFs~ 94 (104)
T PF05381_consen 64 SDHG---VLHYGI--KDASTVFTITHTPGPPGHFSL 94 (104)
T ss_pred cCCc---eEEeec--CCCceEEEEEeCCCCCCcccc
Confidence 8654 345553 44566788888754 79988
No 13
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=31.16 E-value=31 Score=28.13 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=37.8
Q ss_pred HHHHHHhh-cCCeEEEEecCCCChHHH-HHHHHHhcC--chhHHHHHHHHHHHHhhCc
Q 018742 187 QRLLERLQ-VYDLVEHKVQGDGNCQFR-ALSDQIYRT--AEHHEFVRQQIVAQLKSNP 240 (351)
Q Consensus 187 ~rL~~~L~-~~GL~i~~VpGDGNCLFR-AlS~qL~g~--q~~H~~LRk~vV~yL~~np 240 (351)
+.+.+.|. .+.+....|.|||+-+|- +||+.+-|- -..|+.|-.-+.+||.+|.
T Consensus 4 e~Ik~ll~~~L~~e~v~V~Gdg~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~ 61 (80)
T COG5007 4 EEIKSLLENALPLEEVEVEGDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNE 61 (80)
T ss_pred HHHHHHHHhcCCccEEEEecCCceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCc
Confidence 34444444 477888999999987764 466666543 2467788888889998764
No 14
>KOG4634 consensus Mitochondrial F1F0-ATP synthase, subunit Cf6 (coupling factor 6) [Energy production and conversion]
Probab=30.81 E-value=47 Score=28.18 Aligned_cols=24 Identities=38% Similarity=0.279 Sum_probs=21.4
Q ss_pred ccccchHHHHHHHHHHHHHHhhhh
Q 018742 55 CDVESDELIAHALQEELSQLAVSE 78 (351)
Q Consensus 55 ~~v~~d~~ia~~~q~e~~~~~~~~ 78 (351)
.-||.|..+-++|+|||-+||-+=
T Consensus 53 klvds~pe~e~eLk~el~rla~qf 76 (105)
T KOG4634|consen 53 KLVDSDPEYEQELKEELFRLAQQF 76 (105)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 369999999999999999998763
No 15
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=23.10 E-value=9.6 Score=30.08 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=25.2
Q ss_pred hhCccc-ccCcCC-CcHHHHHHhhccCCCCCchHH
Q 018742 237 KSNPDI-YEGYVP-MAYGDYLEKMSESGEWGDHVT 269 (351)
Q Consensus 237 ~~npd~-y~~fv~-~~~~eYl~~M~k~g~WGg~iE 269 (351)
+++.+- ++.||+ .|+++=+-.|.+++.|||.+.
T Consensus 6 R~~~~g~l~~YvpKKDLEE~Vv~~e~~~~WGG~v~ 40 (67)
T TIGR02934 6 RRNRAGELSAYVPKKDLEEVIVSVEKEELWGGWVT 40 (67)
T ss_pred EeCCCCCEEEEEECCcchhheeeeecCccccCEEE
Confidence 445543 677876 588888889999999999754
No 16
>PRK10963 hypothetical protein; Provisional
Probab=23.08 E-value=60 Score=30.52 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.5
Q ss_pred HHHHHHHhhCcccccCc
Q 018742 230 QQIVAQLKSNPDIYEGY 246 (351)
Q Consensus 230 k~vV~yL~~npd~y~~f 246 (351)
+.|++||++|||+|...
T Consensus 6 ~~V~~yL~~~PdFf~~h 22 (223)
T PRK10963 6 RAVVDYLLQNPDFFIRN 22 (223)
T ss_pred HHHHHHHHHCchHHhhC
Confidence 57899999999999753
No 17
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=22.60 E-value=18 Score=37.16 Aligned_cols=92 Identities=10% Similarity=-0.140 Sum_probs=73.2
Q ss_pred HhhcCCeEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhhCcccccCcCCCcHHHHHHhhccCCCCCchHHHH
Q 018742 192 RLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQ 271 (351)
Q Consensus 192 ~L~~~GL~i~~VpGDGNCLFRAlS~qL~g~q~~H~~LRk~vV~yL~~npd~y~~fv~~~~~eYl~~M~k~g~WGg~iELq 271 (351)
.+..++..+....-+++|.+|...+.+.+.++.+..-+..+|-|...+.+.|..=-+.....|+..|...+.|-|...++
T Consensus 49 ~~~~~~~~r~~~v~~~~~~~~~~~d~~~~~e~~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 128 (371)
T KOG2605|consen 49 GTDGYNNKRYGEVDRDFMIARGHQDEVLTVEDAEMAAICQSVLFKVLYQERFKLPSDTPCNGENSPMCSFHSRRGNESFQ 128 (371)
T ss_pred eeccccCccccchhhhhhhhcccccccccccHHHHhhHHhhhhhhhhhhhcccCCCCCcccccCCCCCcccccccccccc
Confidence 35566777777888999999999999999999999999999999999999887633445667777888888888888888
Q ss_pred HHHHHhCCcEEE
Q 018742 272 AAADLYGVKIFV 283 (351)
Q Consensus 272 AlA~~y~v~I~V 283 (351)
|++.--.+.+..
T Consensus 129 a~s~~~~~~~~~ 140 (371)
T KOG2605|consen 129 AASFGGLEIDLE 140 (371)
T ss_pred cccccccccchh
Confidence 777654444433
No 18
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=21.55 E-value=78 Score=26.05 Aligned_cols=72 Identities=21% Similarity=0.342 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcCCeEEEEecCCC-ChHHHHHHHHHhcCchhHHHHHHHHHHHHhhCcccccCcCCCcHHHHHHhhccCCC
Q 018742 185 DHQRLLERLQVYDLVEHKVQGDG-NCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGE 263 (351)
Q Consensus 185 d~~rL~~~L~~~GL~i~~VpGDG-NCLFRAlS~qL~g~q~~H~~LRk~vV~yL~~npd~y~~fv~~~~~eYl~~M~k~g~ 263 (351)
=++.|.+.|..+|+ || .|+.|||-+.--. ...|.-|=..++..|-+-++.-. ..--.+|...+ +.|.
T Consensus 9 lY~~lE~~l~~~G~-------~g~~ClLR~ICE~a~~-~~~~~Gll~ell~ilftps~~~~---~~~~~~Y~~A~-~~G~ 76 (95)
T smart00718 9 LYEALENLLDQLGF-------NGRACLLRAICESAQK-LDDHRGLLGELLRIVLTPPDELE---EVLDPDYREAY-RAGR 76 (95)
T ss_pred HHHHHHHHHHHcCC-------CchhhHHHHHHHcccc-cccccchHHHHHHHhhcCCcchh---hhchHHHHHHH-HcCC
Confidence 45677888888886 77 9999999886443 23333366667777766652111 11234676555 3454
Q ss_pred CCchH
Q 018742 264 WGDHV 268 (351)
Q Consensus 264 WGg~i 268 (351)
-|++.
T Consensus 77 ~g~dC 81 (95)
T smart00718 77 AGGDC 81 (95)
T ss_pred CCCCH
Confidence 45554
No 19
>TIGR01078 arcA arginine deiminase. Arginine deiminase is the first enzyme of the arginine deiminase pathway of arginine degradation.
Probab=21.28 E-value=1.5e+02 Score=30.58 Aligned_cols=73 Identities=15% Similarity=0.310 Sum_probs=48.3
Q ss_pred CCCCCCchhhHHHHHHHHHhhcCCeEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhhCcccccCcCCCcHHH
Q 018742 174 GEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGD 253 (351)
Q Consensus 174 g~iP~~dea~~d~~rL~~~L~~~GL~i~~VpGDGNCLFRAlS~qL~g~q~~H~~LRk~vV~yL~~npd~y~~fv~~~~~e 253 (351)
-.+|..+.|..+|..|.+.|+..|.++..+.. -++..|. +..+|+.+++........+..-......+
T Consensus 34 d~i~~~~~a~~EHd~f~~~Lr~~GveV~~l~d-------ll~e~l~-----~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 101 (405)
T TIGR01078 34 DDIPWVEDAQKEHDQFANTLRDNGIEVLYLED-------LLAETLD-----LPEAKEKFIDEFLSESEILGLGLKVELRD 101 (405)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHCCCEEEEhHH-------HHHHHhC-----CHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 36889999999999999999999999887542 2333331 23778877777766544433222234455
Q ss_pred HHHhh
Q 018742 254 YLEKM 258 (351)
Q Consensus 254 Yl~~M 258 (351)
|+..|
T Consensus 102 ~l~~~ 106 (405)
T TIGR01078 102 YLKSL 106 (405)
T ss_pred HHHhC
Confidence 55544
Done!