Query 018742
Match_columns 351
No_of_seqs 233 out of 1091
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:21:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 1.8E-36 6.1E-41 274.4 12.3 134 187-322 47-182 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 1.5E-32 5.3E-37 252.9 13.5 129 194-327 16-145 (212)
3 3phx_A RNA-directed RNA polyme 100.0 3E-30 1E-34 233.4 13.4 126 198-327 31-165 (185)
4 3phu_A RNA-directed RNA polyme 100.0 9.4E-30 3.2E-34 235.8 13.7 127 198-328 31-166 (219)
5 1tff_A Ubiquitin thiolesterase 99.8 4.4E-21 1.5E-25 178.9 12.7 95 226-323 133-232 (234)
6 2zfy_A Ubiquitin thioesterase 99.8 2.8E-19 9.4E-24 166.6 14.1 93 226-321 136-234 (234)
7 4dhi_B Ubiquitin thioesterase 99.8 4E-18 1.4E-22 163.2 13.8 100 226-327 171-279 (284)
8 4ddg_A Ubiquitin-conjugating e 99.7 1E-17 3.5E-22 166.6 10.1 93 226-321 301-399 (399)
9 3dkb_A Tumor necrosis factor, 98.7 7.4E-08 2.5E-12 94.7 12.6 126 197-324 111-285 (390)
10 3zrh_A Ubiquitin thioesterase 98.5 2.5E-07 8.7E-12 92.3 9.7 128 197-325 188-352 (454)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=1.8e-36 Score=274.43 Aligned_cols=134 Identities=25% Similarity=0.485 Sum_probs=102.2
Q ss_pred HHHHHHh-hcCCeEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhhCcccccCcCCCcHHHHHHhhccCCCCC
Q 018742 187 QRLLERL-QVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWG 265 (351)
Q Consensus 187 ~rL~~~L-~~~GL~i~~VpGDGNCLFRAlS~qL~g~q~~H~~LRk~vV~yL~~npd~y~~fv~~~~~eYl~~M~k~g~WG 265 (351)
..+.++| +.+||++++|+|||||||||||+||+++++.|..||+.|++||++|++.|.+|++++|++||++|+++++||
T Consensus 47 ~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~WG 126 (185)
T 3pfy_A 47 HWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHG 126 (185)
T ss_dssp HHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-----------------C
T ss_pred HHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCCCccc
Confidence 3455555 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCcEEEEEccCCceEEEEcC-CCCCCCCeEEEEecCCCcceeeecC
Q 018742 266 DHVTLQAAADLYGVKIFVITSFKDTCYIEILP-NVERSIRVIYLSFWAEVHYNSIYPA 322 (351)
Q Consensus 266 g~iELqAlA~~y~v~I~V~ss~~~~~~iei~P-~~~~~~~~I~Lsy~~~~HYdSV~~~ 322 (351)
|++||+|||++|+++|+|++..... +.+++ ......++|+|+|++++|||||+..
T Consensus 127 g~iEL~AlS~~~~v~I~V~~~~~~~--i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p 182 (185)
T 3pfy_A 127 NHIEMQAMAEMYNRPVEVYQYSTEP--INTFHGIHQNEDEPIRVSYHRNIHYNSVVNP 182 (185)
T ss_dssp CHHHHHHHHHHHTSCEEEESSCSSC--SEEECTTSCCTTSCEEEEEETTTEEEEEECC
T ss_pred hHHHHHHHHHhhCCcEEEEECCCCC--eEEecCccCCCCCEEEEEECCCCCcccccCC
Confidence 9999999999999999999875432 33333 2345678999999999999999854
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.98 E-value=1.5e-32 Score=252.87 Aligned_cols=129 Identities=19% Similarity=0.268 Sum_probs=113.5
Q ss_pred hcCCeEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhhCccccc-CcCCCcHHHHHHhhccCCCCCchHHHHH
Q 018742 194 QVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYE-GYVPMAYGDYLEKMSESGEWGDHVTLQA 272 (351)
Q Consensus 194 ~~~GL~i~~VpGDGNCLFRAlS~qL~g~q~~H~~LRk~vV~yL~~npd~y~-~fv~~~~~eYl~~M~k~g~WGg~iELqA 272 (351)
...||.+++|||||||||||||+|| +++..|..||+.|++||++||+.|. .|++++|++||++|+++++|||++||+|
T Consensus 16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A 94 (212)
T 3by4_A 16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI 94 (212)
T ss_dssp CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence 4568999999999999999999999 9999999999999999999999997 4568999999999999999999999999
Q ss_pred HHHHhCCcEEEEEccCCceEEEEcCCCCCCCCeEEEEecCCCcceeeecCCCCCC
Q 018742 273 AADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGDVPT 327 (351)
Q Consensus 273 lA~~y~v~I~V~ss~~~~~~iei~P~~~~~~~~I~Lsy~~~~HYdSV~~~~d~p~ 327 (351)
||++|+++|.|++... ...+.|.+. . ..++|+|+|+ ++|||||++..+.+.
T Consensus 95 ls~~~~~~I~V~~~~~-~~~~~~~~~-~-~~~~I~L~Y~-g~HYdsl~~~~d~~~ 145 (212)
T 3by4_A 95 ISDALAVAIYVVDIDA-VKIEKFNED-K-FDNYILILFN-GIHYDSLTMNEFKTV 145 (212)
T ss_dssp HHHHHTCEEEEEETTT-TEEEEESTT-T-CSEEEEEEEC-SSCEEEEEETTTBCC
T ss_pred HHHHHCCCEEEEECCC-CCeEEeCCC-C-CCCeEEEEEc-CCcceEEecCCCccc
Confidence 9999999999999853 345555542 2 5679999997 899999999555443
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.97 E-value=3e-30 Score=233.41 Aligned_cols=126 Identities=18% Similarity=0.360 Sum_probs=108.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC-chh-----HHHHHHHHHHHHhhCcccccCcCCCcHHHHHHhhccCCCCCchHHHH
Q 018742 198 LVEHKVQGDGNCQFRALSDQIYRT-AEH-----HEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQ 271 (351)
Q Consensus 198 L~i~~VpGDGNCLFRAlS~qL~g~-q~~-----H~~LRk~vV~yL~~npd~y~~fv~~~~~eYl~~M~k~g~WGg~iELq 271 (351)
+.+.+|+|||||||||||+||+++ +.. |..||+.|++||++|++. .+++++|++||++|+++++|||++||+
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~ 108 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS 108 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHH
Confidence 778889999999999999999998 666 999999999999999999 356889999999999999999999999
Q ss_pred HHHHHhCCcEEEEEccCCc---eEEEEcCCCCCCCCeEEEEecCCCcceeeecCCCCCC
Q 018742 272 AAADLYGVKIFVITSFKDT---CYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGDVPT 327 (351)
Q Consensus 272 AlA~~y~v~I~V~ss~~~~---~~iei~P~~~~~~~~I~Lsy~~~~HYdSV~~~~d~p~ 327 (351)
|+|++|+++|.|++....+ ..+.+.+ ....++|+|+|++++|||+|++..+.+.
T Consensus 109 Als~~~~v~I~V~~~d~~~~~~~i~~f~~--~~~~~~I~L~Y~g~~HYdsl~~~~~~~~ 165 (185)
T 3phx_A 109 MLAKEMGITIIIWTVAASDEVEAGIKFGD--GDVFTAVNLLHSGQTHFDALRILPQFET 165 (185)
T ss_dssp HHHHHHCCCEEEEEC--CCBCCEEEEESS--CCTTTSEEEEEETTTEEEEEEECGGGC-
T ss_pred HHHHHHCCcEEEEEecCCCCceEEEEcCC--CCCCCEEEEEECCCcCchhceECCCCCC
Confidence 9999999999999876544 2345543 3347899999988899999999887543
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.96 E-value=9.4e-30 Score=235.80 Aligned_cols=127 Identities=18% Similarity=0.345 Sum_probs=110.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC-chh-----HHHHHHHHHHHHhhCcccccCcCCCcHHHHHHhhccCCCCCchHHHH
Q 018742 198 LVEHKVQGDGNCQFRALSDQIYRT-AEH-----HEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQ 271 (351)
Q Consensus 198 L~i~~VpGDGNCLFRAlS~qL~g~-q~~-----H~~LRk~vV~yL~~npd~y~~fv~~~~~eYl~~M~k~g~WGg~iELq 271 (351)
+.+++|+|||||||||||+||+++ +.. |..||+.|++||++|++. .+++++|++||++|+++++|||++||+
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~ 108 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS 108 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHH
Confidence 788899999999999999999998 566 999999999999999999 356889999999999999999999999
Q ss_pred HHHHHhCCcEEEEEccCC--c-eEEEEcCCCCCCCCeEEEEecCCCcceeeecCCCCCCc
Q 018742 272 AAADLYGVKIFVITSFKD--T-CYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGDVPTF 328 (351)
Q Consensus 272 AlA~~y~v~I~V~ss~~~--~-~~iei~P~~~~~~~~I~Lsy~~~~HYdSV~~~~d~p~~ 328 (351)
|+|++|+++|+|++.... . ..+.+.+ ....++|+|+|++++|||+|++..+.+..
T Consensus 109 AlS~~~~v~I~V~~~d~~g~~~~i~~fge--~~~~~~I~L~Y~g~~HYdSL~~~~d~~~~ 166 (219)
T 3phu_A 109 MLAKEMGITIIIWTVAASDEVEAGIKFGD--GDVFTAVNLLHSGQTHFDALRILPQFETD 166 (219)
T ss_dssp HHHHHTTCCEEEEEESSSSBEEEEEEESS--CCTTTSEEEEEETTTEEEEEEECTTTCCS
T ss_pred HHHHHhCCCEEEEEecCCCCceeEEEecC--CCCCCeEEEEECCCcCchhheECCCCCCC
Confidence 999999999999987654 2 2445544 33478999999988999999999886543
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.85 E-value=4.4e-21 Score=178.91 Aligned_cols=95 Identities=19% Similarity=0.370 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhCcccccCcCCC--cHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEccCCceEEE--EcCCCC
Q 018742 226 EFVRQQIVAQLKSNPDIYEGYVPM--AYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIE--ILPNVE 300 (351)
Q Consensus 226 ~~LRk~vV~yL~~npd~y~~fv~~--~~~eYl~-~M~k~g~WGg~iELqAlA~~y~v~I~V~ss~~~~~~ie--i~P~~~ 300 (351)
..||..+..||++|++.|.+|+++ ++++||+ .+..+++||||+||+|||+.++++|.|+...++...+. .+| .
T Consensus 133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~--~ 210 (234)
T 1tff_A 133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFP--E 210 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCC--C
T ss_pred HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCC--C
Confidence 468999999999999999999965 8999999 89999999999999999999999999998766542221 123 2
Q ss_pred CCCCeEEEEecCCCcceeeecCC
Q 018742 301 RSIRVIYLSFWAEVHYNSIYPAG 323 (351)
Q Consensus 301 ~~~~~I~Lsy~~~~HYdSV~~~~ 323 (351)
...+.|+|+|. ++|||+|++..
T Consensus 211 ~~~~~I~LlY~-pgHYdily~~~ 232 (234)
T 1tff_A 211 AATPSVYLLYK-TSHYNILYAAD 232 (234)
T ss_dssp CSSCSEEEEEE-TTEEEEEEECC
T ss_pred CCCCeEEEEEC-CCCceecccCC
Confidence 45678999996 56999999874
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.80 E-value=2.8e-19 Score=166.62 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhCcccccCcCCC--cHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEccCCc---eEEEEcCCC
Q 018742 226 EFVRQQIVAQLKSNPDIYEGYVPM--AYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKDT---CYIEILPNV 299 (351)
Q Consensus 226 ~~LRk~vV~yL~~npd~y~~fv~~--~~~eYl~-~M~k~g~WGg~iELqAlA~~y~v~I~V~ss~~~~---~~iei~P~~ 299 (351)
..+|..++.||++|++.|.+|+++ ++++||+ .+..+++||||++|+|||++|+++|.|+...+.. .....+|.
T Consensus 136 ~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~- 214 (234)
T 2zfy_A 136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE- 214 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST-
T ss_pred HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC-
Confidence 478999999999999999999975 8999997 6999999999999999999999999999876643 22223342
Q ss_pred CCCCCeEEEEecCCCcceeeec
Q 018742 300 ERSIRVIYLSFWAEVHYNSIYP 321 (351)
Q Consensus 300 ~~~~~~I~Lsy~~~~HYdSV~~ 321 (351)
...+.|+|+|. ++|||+|+|
T Consensus 215 -~~~p~I~LlY~-pgHYdiLy~ 234 (234)
T 2zfy_A 215 -GSEPKVYLLYR-PGHYDILYK 234 (234)
T ss_dssp -TCCCSEEEEEE-TTEEEEEEC
T ss_pred -CCCCeEEEEEC-CCCcccCCC
Confidence 34678999997 569999986
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.76 E-value=4e-18 Score=163.22 Aligned_cols=100 Identities=20% Similarity=0.293 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhCcccccCcCCC--cHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEccCC--c--eEEE-EcC
Q 018742 226 EFVRQQIVAQLKSNPDIYEGYVPM--AYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKD--T--CYIE-ILP 297 (351)
Q Consensus 226 ~~LRk~vV~yL~~npd~y~~fv~~--~~~eYl~-~M~k~g~WGg~iELqAlA~~y~v~I~V~ss~~~--~--~~ie-i~P 297 (351)
..||..+..||++|++.|.+|+.+ ++++||+ .+...++||||++|+|||++|+++|.|+...+. . .... + |
T Consensus 171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-p 249 (284)
T 4dhi_B 171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-P 249 (284)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-S
T ss_pred HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-C
Confidence 478999999999999999999964 8999998 899999999999999999999999999877552 1 1223 4 6
Q ss_pred CCCC-CCCeEEEEecCCCcceeeecCCCCCC
Q 018742 298 NVER-SIRVIYLSFWAEVHYNSIYPAGDVPT 327 (351)
Q Consensus 298 ~~~~-~~~~I~Lsy~~~~HYdSV~~~~d~p~ 327 (351)
.... ..+.|+|.| .++|||.||+....+.
T Consensus 250 ~~~~~~~p~I~LLY-rpgHYDILY~~~p~~~ 279 (284)
T 4dhi_B 250 SDDQQIAPEITLLY-RPGHYDVIYKKDSTEA 279 (284)
T ss_dssp CCCSCCCCSEEEEE-ETTEEEEEEECC----
T ss_pred CCCCCCCCEEEEee-cCCCccccccCCCCch
Confidence 4332 346799999 5799999999865443
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.72 E-value=1e-17 Score=166.59 Aligned_cols=93 Identities=19% Similarity=0.319 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhhCcccccCcCCC--cHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEccCCc---eEEEEcCCC
Q 018742 226 EFVRQQIVAQLKSNPDIYEGYVPM--AYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKDT---CYIEILPNV 299 (351)
Q Consensus 226 ~~LRk~vV~yL~~npd~y~~fv~~--~~~eYl~-~M~k~g~WGg~iELqAlA~~y~v~I~V~ss~~~~---~~iei~P~~ 299 (351)
..||..+..||++|++.|.+|+++ ++++||+ .|...++||||++|+|||+.|+++|.|+...+.. .....+|.
T Consensus 301 ~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~- 379 (399)
T 4ddg_A 301 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE- 379 (399)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTT-
T ss_pred HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCC-
Confidence 468999999999999999999965 7999999 9999999999999999999999999998765521 11122342
Q ss_pred CCCCCeEEEEecCCCcceeeec
Q 018742 300 ERSIRVIYLSFWAEVHYNSIYP 321 (351)
Q Consensus 300 ~~~~~~I~Lsy~~~~HYdSV~~ 321 (351)
...+.|+|.| ..+|||.||+
T Consensus 380 -~~~~~I~LLY-rPgHYDiLY~ 399 (399)
T 4ddg_A 380 -GSEPKVYLLY-RPGHYDILYK 399 (399)
T ss_dssp -TCCCCCEEEE-ETBEEEEEEC
T ss_pred -CCCCEEEEEE-cCCccccCCC
Confidence 3467899999 6789999986
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.73 E-value=7.4e-08 Score=94.75 Aligned_cols=126 Identities=20% Similarity=0.357 Sum_probs=88.6
Q ss_pred CeEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhhCcc-cc-----------cCcC-------C----CcHHH
Q 018742 197 DLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPD-IY-----------EGYV-------P----MAYGD 253 (351)
Q Consensus 197 GL~i~~VpGDGNCLFRAlS~qL~g~q~~H~~LRk~vV~yL~~npd-~y-----------~~fv-------~----~~~~e 253 (351)
-|....+.||||||.+|+|..++|..+....+|+.+.+-|++... .| ..|+ + .+|+.
T Consensus 111 rL~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~ 190 (390)
T 3dkb_A 111 KLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDN 190 (390)
T ss_dssp CEEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHH
T ss_pred ceEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHH
Confidence 467778999999999999999999999999999999999998642 11 1222 1 24555
Q ss_pred HHHhhccCCC----------CCchHHHHHHHHHhCCcEEEEEcc--CC---c-eE--E----EEc----CCCCCCCCeEE
Q 018742 254 YLEKMSESGE----------WGDHVTLQAAADLYGVKIFVITSF--KD---T-CY--I----EIL----PNVERSIRVIY 307 (351)
Q Consensus 254 Yl~~M~k~g~----------WGg~iELqAlA~~y~v~I~V~ss~--~~---~-~~--i----ei~----P~~~~~~~~I~ 307 (351)
-++ |..+.. -=-++.+.++|++++|||+|+... ++ + .+ + -+. |.....+.+|.
T Consensus 191 Iv~-~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~ 269 (390)
T 3dkb_A 191 LIK-MASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIV 269 (390)
T ss_dssp HHH-HTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEE
T ss_pred HHH-HhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceE
Confidence 444 333321 123688999999999999999532 11 1 11 1 122 23445677999
Q ss_pred EEecCCCcceeeecCCC
Q 018742 308 LSFWAEVHYNSIYPAGD 324 (351)
Q Consensus 308 Lsy~~~~HYdSV~~~~d 324 (351)
|+|. .+||.+|.++.+
T Consensus 270 LgY~-s~HFsaLV~me~ 285 (390)
T 3dkb_A 270 LGYD-SHHFVPLVTLKD 285 (390)
T ss_dssp EEEC-SSCEEEEEEBCS
T ss_pred EEec-cCceeeeeeccc
Confidence 9996 589999999874
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.52 E-value=2.5e-07 Score=92.31 Aligned_cols=128 Identities=13% Similarity=0.152 Sum_probs=93.7
Q ss_pred CeEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhhCcccc----------------cCcC--C----CcHHHH
Q 018742 197 DLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIY----------------EGYV--P----MAYGDY 254 (351)
Q Consensus 197 GL~i~~VpGDGNCLFRAlS~qL~g~q~~H~~LRk~vV~yL~~npd~y----------------~~fv--~----~~~~eY 254 (351)
.|......||||||.+|+|..++|.++....||+.+.+-|++....| -.|. + .+|+.-
T Consensus 188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i 267 (454)
T 3zrh_A 188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI 267 (454)
T ss_dssp CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence 46777899999999999999999999999999999999998753322 1232 2 245555
Q ss_pred HHhhccCCCCCchHHHHHHHHHhCCcEEEEEccCCceE-------E----EEcC----CCCCCCCeEEEEecCCCcceee
Q 018742 255 LEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCY-------I----EILP----NVERSIRVIYLSFWAEVHYNSI 319 (351)
Q Consensus 255 l~~M~k~g~WGg~iELqAlA~~y~v~I~V~ss~~~~~~-------i----ei~P----~~~~~~~~I~Lsy~~~~HYdSV 319 (351)
++..+.+|.-=-++.+.++|+++++||+|+...--..+ + -+.| .....+.||.|+|. ..||.++
T Consensus 268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~-~gHFsaL 346 (454)
T 3zrh_A 268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYT-RGHFSAL 346 (454)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEE-TTEEEEE
T ss_pred HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEec-ccceeee
Confidence 55556677666678899999999999999975221000 0 1223 23345679999996 5799999
Q ss_pred ecCCCC
Q 018742 320 YPAGDV 325 (351)
Q Consensus 320 ~~~~d~ 325 (351)
.+...-
T Consensus 347 V~~~~~ 352 (454)
T 3zrh_A 347 VAMEND 352 (454)
T ss_dssp EEBCCC
T ss_pred eecccc
Confidence 998763
Done!